Cow genome map


           Conread name:
           Ss1.1-Mixg-0001c04.3
        

               Conread position:
               1-150
               

               Cow position:
               chr1:96482857-96482704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               121
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               31, 7
               

               Conread position:
               1-172
               

               Cow position:
               chr1:97986259-97986431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               124
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               1-184
               

               Cow position:
               chr1:11729356-11729181 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               144
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               1-184
               

               Cow position:
               chr1:101280552-101280728 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               1-185
               

               Cow position:
               chr1:6394742-6394562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               1-199
               

               Cow position:
               chr1:55357104-55357302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               147
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               69, 7
               

               Conread position:
               2-179
               

               Cow position:
               chr1:83606261-83606439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               137
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               2-183
               

               Cow position:
               chr1:10941913-10942087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               138
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               2-183
               

               Cow position:
               chr1:10964473-10964299 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               137
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               3-130
               

               Cow position:
               chr1:74304895-74305022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               128
               

               Alignm identity:
               101
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-131
               

               Cow position:
               chr1:716401-716528 (view UCSC Genome Browser custom track)
               

               Alignm length:
               129
               

               Alignm identity:
               99
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               3-135
               

               Cow position:
               chr1:31274803-31274935 (view UCSC Genome Browser custom track)
               

               Alignm length:
               133
               

               Alignm identity:
               101
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-143
               

               Cow position:
               chr1:78801792-78801932 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               103
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-147
               

               Cow position:
               chr1:76222535-76222681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               112
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               126, 0
               

               Conread position:
               3-150
               

               Cow position:
               chr1:3685773-3685634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               112
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               96, 0
               

               Conread position:
               3-155
               

               Cow position:
               chr1:31801736-31801885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               117
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               137, 34
               

               Conread position:
               3-164
               

               Cow position:
               chr1:22231835-22231674 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               128
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-168
               

               Cow position:
               chr1:23373045-23372881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               136
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               3-169
               

               Cow position:
               chr1:53402968-53402802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-171
               

               Cow position:
               chr1:32217422-32217261 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               129
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               3-175
               

               Cow position:
               chr1:40181437-40181610 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               133
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               135, 0
               

               Conread position:
               3-178
               

               Cow position:
               chr1:10824033-10824207 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               121
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               84, 0
               

               Conread position:
               3-178
               

               Cow position:
               chr1:54569885-54569710 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               137
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-178
               

               Cow position:
               chr1:101883207-101883382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               130
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-179
               

               Cow position:
               chr1:98619386-98619210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               123
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-182
               

               Cow position:
               chr1:10880895-10881074 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               126
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               107, 84
               

               Conread position:
               3-182
               

               Cow position:
               chr1:18697757-18697578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               125
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               73, 77
               

               Conread position:
               3-182
               

               Cow position:
               chr1:47790484-47790654 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               3-182
               

               Cow position:
               chr1:63595867-63596046 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               124
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-182
               

               Cow position:
               chr1:79846063-79846243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               126
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               3-182
               

               Cow position:
               chr1:91816584-91816763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               123
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-183
               

               Cow position:
               chr1:150739-150918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               130
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               3-183
               

               Cow position:
               chr1:648512-648332 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               123
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-183
               

               Cow position:
               chr1:874847-874661 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               140
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               3-183
               

               Cow position:
               chr1:2972104-2971923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               137
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               155, 0
               

               Conread position:
               3-183
               

               Cow position:
               chr1:4391084-4391272 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               132, 0
               

               Conread position:
               3-183
               

               Cow position:
               chr1:21954043-21954214 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               3-183
               

               Cow position:
               chr1:23186618-23186791 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               141
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               3-183
               

               Cow position:
               chr1:26895628-26895804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               136
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               3-183
               

               Cow position:
               chr1:29329730-29329548 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               136
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               3-183
               

               Cow position:
               chr1:30035408-30035231 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               136
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               101, 0
               

               Conread position:
               3-183
               

               Cow position:
               chr1:33409439-33409618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               128
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               84, 0
               

               Conread position:
               3-183
               

               Cow position:
               chr1:36080011-36079831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               123
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-183
               

               Cow position:
               chr1:42482383-42482209 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               137
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               3-183
               

               Cow position:
               chr1:44075541-44075710 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               132
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               3-183
               

               Cow position:
               chr1:51609562-51609383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               124
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               3-183
               

               Cow position:
               chr1:66898310-66898491 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               135
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               3-183
               

               Cow position:
               chr1:68688378-68688198 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               123
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-183
               

               Cow position:
               chr1:76518609-76518429 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               145
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-183
               

               Cow position:
               chr1:78092224-78092044 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               125
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-183
               

               Cow position:
               chr1:82336855-82336685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               3-183
               

               Cow position:
               chr1:84103874-84104054 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-183
               

               Cow position:
               chr1:91649231-91649410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               124
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               136, 0
               

               Conread position:
               3-183
               

               Cow position:
               chr1:91861113-91861292 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               127
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               157, 0
               

               Conread position:
               3-183
               

               Cow position:
               chr1:92524201-92524021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               134
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-183
               

               Cow position:
               chr1:92996702-92996884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               56, 84
               

               Conread position:
               3-183
               

               Cow position:
               chr1:96304788-96304962 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               3-184
               

               Cow position:
               chr1:15488986-15488806 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               124
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               3-184
               

               Cow position:
               chr1:52450950-52450777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               3-184
               

               Cow position:
               chr1:82337597-82337770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               133
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               3-185
               

               Cow position:
               chr1:60987176-60986993 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               163, 0
               

               Conread position:
               3-191
               

               Cow position:
               chr1:26178624-26178812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               131
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-191
               

               Cow position:
               chr1:36921205-36921017 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               131
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-191
               

               Cow position:
               chr1:52619014-52618828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               128
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               3-201
               

               Cow position:
               chr1:49082930-49082732 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               154
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-202
               

               Cow position:
               chr1:1085644-1085443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               136
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               195, 0
               

               Conread position:
               3-205
               

               Cow position:
               chr1:9637214-9637014 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               80, 0
               

               Conread position:
               4-191
               

               Cow position:
               chr1:12464484-12464665 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               5-142
               

               Cow position:
               chr1:99629344-99629212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               138
               

               Alignm identity:
               110
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               5-171
               

               Cow position:
               chr1:5010651-5010817 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               117
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               5-174
               

               Cow position:
               chr1:52509582-52509750 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               121
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               156, 22
               

               Conread position:
               5-177
               

               Cow position:
               chr1:64458154-64457978 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               135
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               5-180
               

               Cow position:
               chr1:25021896-25022065 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               5-180
               

               Cow position:
               chr1:96558664-96558839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               141
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               5-181
               

               Cow position:
               chr1:98090600-98090781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               137
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               44, 76
               

               Conread position:
               5-183
               

               Cow position:
               chr1:81228153-81228327 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               136
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               125, 45
               

               Conread position:
               5-203
               

               Cow position:
               chr1:56719522-56719327 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               146
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               144, 50
               

               Conread position:
               5-204
               

               Cow position:
               chr1:45099938-45099747 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               164, 50
               

               Conread position:
               7-120
               

               Cow position:
               chr1:66693718-66693831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               114
               

               Alignm identity:
               89
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               7-165
               

               Cow position:
               chr1:78784721-78784879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               113
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               7-168
               

               Cow position:
               chr1:78811218-78811060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               118
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               69, 54
               

               Conread position:
               7-175
               

               Cow position:
               chr1:95703984-95703820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               122
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               7-177
               

               Cow position:
               chr1:51446062-51445899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               125
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               7-181
               

               Cow position:
               chr1:81179167-81179339 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               113, 20
               

               Conread position:
               7-184
               

               Cow position:
               chr1:96081658-96081486 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               139
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               7-190
               

               Cow position:
               chr1:73545728-73545911 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               129
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               7-191
               

               Cow position:
               chr1:62997981-62997798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               62, 145
               

               Conread position:
               8-120
               

               Cow position:
               chr1:34767473-34767357 (view UCSC Genome Browser custom track)
               

               Alignm length:
               117
               

               Alignm identity:
               93
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               8-120
               

               Cow position:
               chr1:43340454-43340564 (view UCSC Genome Browser custom track)
               

               Alignm length:
               113
               

               Alignm identity:
               94
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               8-122
               

               Cow position:
               chr1:7962843-7962730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               115
               

               Alignm identity:
               96
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               8-126
               

               Cow position:
               chr1:64706081-64705963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               119
               

               Alignm identity:
               97
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               8-128
               

               Cow position:
               chr1:44814484-44814608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               125
               

               Alignm identity:
               103
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               8-128
               

               Cow position:
               chr1:92510168-92510288 (view UCSC Genome Browser custom track)
               

               Alignm length:
               125
               

               Alignm identity:
               102
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               64, 25
               

               Conread position:
               8-129
               

               Cow position:
               chr1:33080631-33080751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               122
               

               Alignm identity:
               95
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               8-130
               

               Cow position:
               chr1:15103063-15102943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               123
               

               Alignm identity:
               99
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               8-130
               

               Cow position:
               chr1:65160309-65160188 (view UCSC Genome Browser custom track)
               

               Alignm length:
               123
               

               Alignm identity:
               97
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               103, 0
               

               Conread position:
               8-131
               

               Cow position:
               chr1:36625697-36625574 (view UCSC Genome Browser custom track)
               

               Alignm length:
               124
               

               Alignm identity:
               97
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               8-131
               

               Cow position:
               chr1:69911291-69911162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               102
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               8-131
               

               Cow position:
               chr1:83246607-83246484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               124
               

               Alignm identity:
               101
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               8-135
               

               Cow position:
               chr1:80423553-80423677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               129
               

               Alignm identity:
               102
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               92, 47
               

               Conread position:
               8-138
               

               Cow position:
               chr1:99031797-99031927 (view UCSC Genome Browser custom track)
               

               Alignm length:
               133
               

               Alignm identity:
               104
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               41, 52
               

               Conread position:
               8-140
               

               Cow position:
               chr1:42592106-42592236 (view UCSC Genome Browser custom track)
               

               Alignm length:
               133
               

               Alignm identity:
               101
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               72, 0
               

               Conread position:
               8-141
               

               Cow position:
               chr1:47190813-47190946 (view UCSC Genome Browser custom track)
               

               Alignm length:
               134
               

               Alignm identity:
               104
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               8-142
               

               Cow position:
               chr1:89146693-89146827 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               103
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               8-142
               

               Cow position:
               chr1:90192599-90192464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               101
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               8-148
               

               Cow position:
               chr1:3130369-3130507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               111
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               8-148
               

               Cow position:
               chr1:7966026-7965888 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               104
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               8-148
               

               Cow position:
               chr1:25956075-25955937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               113
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               8-148
               

               Cow position:
               chr1:43379182-43379320 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               109
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               8-148
               

               Cow position:
               chr1:82538106-82537969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               108
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               109, 52
               

               Conread position:
               8-148
               

               Cow position:
               chr1:84787439-84787312 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               113
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               8-150
               

               Cow position:
               chr1:42797058-42796917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               116
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               8-153
               

               Cow position:
               chr1:69442336-69442481 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               111
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               8-154
               

               Cow position:
               chr1:41022595-41022455 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               121
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               8-154
               

               Cow position:
               chr1:69378419-69378563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               113
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               64, 47
               

               Conread position:
               8-154
               

               Cow position:
               chr1:89388522-89388380 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               112
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               8-155
               

               Cow position:
               chr1:42175907-42175762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               112
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               8-156
               

               Cow position:
               chr1:6941645-6941502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               116
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               8-156
               

               Cow position:
               chr1:79178810-79178662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               117
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               8-156
               

               Cow position:
               chr1:90820301-90820443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               112
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               8-159
               

               Cow position:
               chr1:43296535-43296688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               130
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               8-161
               

               Cow position:
               chr1:22448063-22448226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               125
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               8-161
               

               Cow position:
               chr1:100800590-100800740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               118
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               132, 47
               

               Conread position:
               8-163
               

               Cow position:
               chr1:79169971-79170126 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               120
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               8-164
               

               Cow position:
               chr1:92188138-92187983 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               116
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               49, 0
               

               Conread position:
               8-167
               

               Cow position:
               chr1:26984191-26984033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               117
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               152, 0
               

               Conread position:
               8-167
               

               Cow position:
               chr1:77404724-77404887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               121
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               8-168
               

               Cow position:
               chr1:46245557-46245716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               129
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               23, 107
               

               Conread position:
               8-169
               

               Cow position:
               chr1:70044523-70044378 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               128
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               8-169
               

               Cow position:
               chr1:74919796-74919958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               119
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               8-170
               

               Cow position:
               chr1:68817621-68817780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               125
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               139, 46
               

               Conread position:
               8-171
               

               Cow position:
               chr1:4361873-4362038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               119
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               8-171
               

               Cow position:
               chr1:31256051-31256207 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               123
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               17, 48
               

               Conread position:
               8-171
               

               Cow position:
               chr1:47966841-47967004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               121
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               8-171
               

               Cow position:
               chr1:77986237-77986400 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               114
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               8-172
               

               Cow position:
               chr1:628147-627984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               125
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               8-172
               

               Cow position:
               chr1:32035532-32035692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               128
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               8-172
               

               Cow position:
               chr1:62964447-62964284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               118
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               8-173
               

               Cow position:
               chr1:25383848-25383685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               121
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               8-173
               

               Cow position:
               chr1:53441936-53442095 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               122
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               71, 99
               

               Conread position:
               8-173
               

               Cow position:
               chr1:56748993-56748829 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               126
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               8-173
               

               Cow position:
               chr1:71228274-71228110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               117
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               139, 0
               

               Conread position:
               8-173
               

               Cow position:
               chr1:102423974-102423810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               123
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               8-174
               

               Cow position:
               chr1:1380180-1380013 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               131
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               8-174
               

               Cow position:
               chr1:83682992-83683155 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               125
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               8-175
               

               Cow position:
               chr1:81471530-81471368 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               149, 47
               

               Conread position:
               8-176
               

               Cow position:
               chr1:3942038-3942201 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               121
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               8-176
               

               Cow position:
               chr1:17196446-17196613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               120
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               8-176
               

               Cow position:
               chr1:19599181-19599347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               132
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               8-176
               

               Cow position:
               chr1:84815314-84815143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               126
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               8-177
               

               Cow position:
               chr1:59519090-59518929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               123
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               8-177
               

               Cow position:
               chr1:102500934-102501103 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               128
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               66, 86
               

               Conread position:
               8-178
               

               Cow position:
               chr1:7740122-7739960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               127
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               9, 48
               

               Conread position:
               8-178
               

               Cow position:
               chr1:15875838-15875672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               8-178
               

               Cow position:
               chr1:47242281-47242451 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               119
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               8-178
               

               Cow position:
               chr1:52912713-52912885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               26, 116
               

               Conread position:
               8-178
               

               Cow position:
               chr1:61134594-61134426 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               128
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               149, 0
               

               Conread position:
               8-178
               

               Cow position:
               chr1:62519545-62519375 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               123
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               8-178
               

               Cow position:
               chr1:73457915-73458087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               124
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               8-178
               

               Cow position:
               chr1:95156786-95156952 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               129
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               8-178
               

               Cow position:
               chr1:101866321-101866485 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               128
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               8-179
               

               Cow position:
               chr1:759233-759407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               134
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               8-179
               

               Cow position:
               chr1:31347755-31347923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               126
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               88, 45
               

               Conread position:
               8-179
               

               Cow position:
               chr1:32014370-32014207 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               143
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               8-179
               

               Cow position:
               chr1:33206695-33206870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               137
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               8-179
               

               Cow position:
               chr1:85818431-85818262 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               121
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               8-179
               

               Cow position:
               chr1:95558219-95558048 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               125
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               8-179
               

               Cow position:
               chr1:99609546-99609380 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               132
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               8-180
               

               Cow position:
               chr1:63461057-63460888 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               133
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               8-180
               

               Cow position:
               chr1:72092444-72092613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               129
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               75, 46
               

               Conread position:
               8-180
               

               Cow position:
               chr1:81638721-81638558 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               146
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               8-180
               

               Cow position:
               chr1:83677146-83677317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               127
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               154, 71
               

               Conread position:
               8-181
               

               Cow position:
               chr1:3815502-3815672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               134
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               48, 23
               

               Conread position:
               8-181
               

               Cow position:
               chr1:31934683-31934516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               127
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               8-181
               

               Cow position:
               chr1:58420377-58420212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               128
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               8-181
               

               Cow position:
               chr1:63434619-63434797 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               8-181
               

               Cow position:
               chr1:68710463-68710286 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               131
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               8-181
               

               Cow position:
               chr1:68730183-68730012 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               130
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               62, 140
               

               Conread position:
               8-181
               

               Cow position:
               chr1:71350545-71350718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               130
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               8-181
               

               Cow position:
               chr1:79718987-79718817 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               138
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               135, 88
               

               Conread position:
               8-181
               

               Cow position:
               chr1:81858722-81858892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               141
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               139, 46
               

               Conread position:
               8-181
               

               Cow position:
               chr1:85622711-85622538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               127
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               8-181
               

               Cow position:
               chr1:99637072-99637245 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               128
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               8-182
               

               Cow position:
               chr1:6731358-6731188 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               8-182
               

               Cow position:
               chr1:6959058-6958893 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               132
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               8-182
               

               Cow position:
               chr1:20950896-20950722 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               122
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               8-182
               

               Cow position:
               chr1:24777805-24777981 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               135
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               36, 117
               

               Conread position:
               8-182
               

               Cow position:
               chr1:30983313-30983484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               130
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               62, 143
               

               Conread position:
               8-182
               

               Cow position:
               chr1:42887101-42887269 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               128
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               8-182
               

               Cow position:
               chr1:45555544-45555374 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               134
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               8-182
               

               Cow position:
               chr1:47886301-47886471 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               142
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               8-182
               

               Cow position:
               chr1:49297830-49297659 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               8-182
               

               Cow position:
               chr1:55428774-55428949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               146
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               164, 0
               

               Conread position:
               8-182
               

               Cow position:
               chr1:61885091-61884921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               125
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               8-182
               

               Cow position:
               chr1:64572693-64572523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               127
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               8-182
               

               Cow position:
               chr1:65318756-65318583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               139
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               84, 0
               

               Conread position:
               8-182
               

               Cow position:
               chr1:66752453-66752621 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               129
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               8-182
               

               Cow position:
               chr1:69411516-69411690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               141
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               164, 19
               

               Conread position:
               8-182
               

               Cow position:
               chr1:71078783-71078952 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               127
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               8-182
               

               Cow position:
               chr1:78029847-78030024 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               8-182
               

               Cow position:
               chr1:81364442-81364268 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               8-182
               

               Cow position:
               chr1:86110563-86110729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               126
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               8-182
               

               Cow position:
               chr1:87149637-87149807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               8-182
               

               Cow position:
               chr1:89381453-89381283 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               123
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               8-182
               

               Cow position:
               chr1:89777820-89777993 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               123
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               8-182
               

               Cow position:
               chr1:90621327-90621498 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               124
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               124, 29
               

               Conread position:
               8-182
               

               Cow position:
               chr1:99605010-99605179 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               125
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               8-182
               

               Cow position:
               chr1:100474418-100474242 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               137
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               8-182
               

               Cow position:
               chr1:102266091-102266260 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               134
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               8-183
               

               Cow position:
               chr1:484284-484460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               131
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               8-183
               

               Cow position:
               chr1:6031807-6031631 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               8-183
               

               Cow position:
               chr1:6440367-6440542 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               121
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               8-183
               

               Cow position:
               chr1:7443161-7442983 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               137
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               8-183
               

               Cow position:
               chr1:11853507-11853678 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               124
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               8-183
               

               Cow position:
               chr1:16766907-16767077 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               132
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               8-183
               

               Cow position:
               chr1:17056169-17056001 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               8-183
               

               Cow position:
               chr1:20537381-20537212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               137
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               8-183
               

               Cow position:
               chr1:21577989-21577816 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               133
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               10, 71
               

               Conread position:
               8-183
               

               Cow position:
               chr1:22824088-22823912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               145
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               8-183
               

               Cow position:
               chr1:25735047-25734875 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               135
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               70, 15
               

               Conread position:
               8-183
               

               Cow position:
               chr1:29626731-29626905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               122
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               100, 0
               

               Conread position:
               8-183
               

               Cow position:
               chr1:31607709-31607881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               130
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               8, 0
               

               Conread position:
               8-183
               

               Cow position:
               chr1:31819282-31819118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               130
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               8-183
               

               Cow position:
               chr1:33846391-33846562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               123
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               8-183
               

               Cow position:
               chr1:34856446-34856621 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               134
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               8-183
               

               Cow position:
               chr1:37726235-37726413 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               135
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               8-183
               

               Cow position:
               chr1:38754096-38753930 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               130
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               8-183
               

               Cow position:
               chr1:40303727-40303558 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               134
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               8-183
               

               Cow position:
               chr1:43148355-43148538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               143
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               8-183
               

               Cow position:
               chr1:50765793-50765619 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               133
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               149, 0
               

               Conread position:
               8-183
               

               Cow position:
               chr1:52139449-52139625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               128
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               163, 19
               

               Conread position:
               8-183
               

               Cow position:
               chr1:57089499-57089672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               138
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               99, 0
               

               Conread position:
               8-183
               

               Cow position:
               chr1:63994376-63994548 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               140
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               8-183
               

               Cow position:
               chr1:67585730-67585567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               133
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               8-183
               

               Cow position:
               chr1:69691533-69691708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               136
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               8-183
               

               Cow position:
               chr1:70297461-70297285 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               123
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               8-183
               

               Cow position:
               chr1:71664715-71664889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               134
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               154, 162
               

               Conread position:
               8-183
               

               Cow position:
               chr1:71789969-71790141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               131
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               8-183
               

               Cow position:
               chr1:73020480-73020655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               63, 73
               

               Conread position:
               8-183
               

               Cow position:
               chr1:74751449-74751628 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               125
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               164, 0
               

               Conread position:
               8-183
               

               Cow position:
               chr1:76037333-76037509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               124
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               8-183
               

               Cow position:
               chr1:79660219-79660395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               128
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               8-183
               

               Cow position:
               chr1:81473337-81473162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               131
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               8-183
               

               Cow position:
               chr1:81515418-81515240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               136
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               8-183
               

               Cow position:
               chr1:86340279-86340457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               139
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               47, 155
               

               Conread position:
               8-183
               

               Cow position:
               chr1:90267903-90267728 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               138
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               70, 170
               

               Conread position:
               8-183
               

               Cow position:
               chr1:96019410-96019237 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               149, 0
               

               Conread position:
               8-183
               

               Cow position:
               chr1:97540818-97540642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               125
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               72, 0
               

               Conread position:
               8-183
               

               Cow position:
               chr1:97717397-97717565 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               129
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               8-183
               

               Cow position:
               chr1:99322388-99322555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               133
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               8-184
               

               Cow position:
               chr1:242731-242563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               137
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               8-184
               

               Cow position:
               chr1:4294524-4294350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               133
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               8-184
               

               Cow position:
               chr1:5872595-5872771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               134
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               64, 169
               

               Conread position:
               8-184
               

               Cow position:
               chr1:8287451-8287624 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               146
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               8-184
               

               Cow position:
               chr1:15547644-15547477 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               131
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               8-184
               

               Cow position:
               chr1:20871377-20871553 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               127
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               8-184
               

               Cow position:
               chr1:28563382-28563560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               43, 147
               

               Conread position:
               8-184
               

               Cow position:
               chr1:36998361-36998191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               137
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               8-184
               

               Cow position:
               chr1:42541771-42541604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               8-184
               

               Cow position:
               chr1:43311589-43311766 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               137
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               103, 0
               

               Conread position:
               8-184
               

               Cow position:
               chr1:44507147-44506979 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               134
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               8-184
               

               Cow position:
               chr1:45019627-45019795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               133
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               92, 40
               

               Conread position:
               8-184
               

               Cow position:
               chr1:48444012-48444188 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               124
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               8-184
               

               Cow position:
               chr1:48447649-48447479 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               40, 111
               

               Conread position:
               8-184
               

               Cow position:
               chr1:49980887-49980716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               138
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               8-184
               

               Cow position:
               chr1:53374609-53374439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               131
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               8-184
               

               Cow position:
               chr1:54156555-54156728 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               82, 47
               

               Conread position:
               8-184
               

               Cow position:
               chr1:54258748-54258573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               113, 0
               

               Conread position:
               8-184
               

               Cow position:
               chr1:63530738-63530564 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               132
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               8-184
               

               Cow position:
               chr1:65639102-65638920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               48, 95
               

               Conread position:
               8-184
               

               Cow position:
               chr1:67919307-67919141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               129
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               8-184
               

               Cow position:
               chr1:71665755-71665926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               133
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               91, 0
               

               Conread position:
               8-184
               

               Cow position:
               chr1:72068652-72068829 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               140
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               96, 0
               

               Conread position:
               8-184
               

               Cow position:
               chr1:72422227-72422402 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               120, 0
               

               Conread position:
               8-184
               

               Cow position:
               chr1:72813796-72813622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               144
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               8-184
               

               Cow position:
               chr1:76735297-76735472 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               135
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               64, 29
               

               Conread position:
               8-184
               

               Cow position:
               chr1:76739735-76739904 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               135
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               8-184
               

               Cow position:
               chr1:78793824-78793997 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               137
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               125, 47
               

               Conread position:
               8-184
               

               Cow position:
               chr1:78794057-78794225 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               133
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               8-184
               

               Cow position:
               chr1:88360064-88359884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               144
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               8-184
               

               Cow position:
               chr1:91065978-91066145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               137
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               8-184
               

               Cow position:
               chr1:92684502-92684689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               135
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               8-184
               

               Cow position:
               chr1:93528873-93528705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               137
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               129, 48
               

               Conread position:
               8-184
               

               Cow position:
               chr1:94226365-94226548 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               136
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               42, 169
               

               Conread position:
               8-184
               

               Cow position:
               chr1:95153053-95152877 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               8-184
               

               Cow position:
               chr1:95618820-95618648 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               140
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               8-184
               

               Cow position:
               chr1:95835616-95835792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               142
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               8-184
               

               Cow position:
               chr1:102730578-102730756 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               127
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               8-185
               

               Cow position:
               chr1:3324053-3323873 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               68, 86
               

               Conread position:
               8-185
               

               Cow position:
               chr1:16060829-16060999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               138
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               8-185
               

               Cow position:
               chr1:51860385-51860556 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               140
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               8-185
               

               Cow position:
               chr1:60045166-60044993 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               8-185
               

               Cow position:
               chr1:100823219-100823043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               135
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               163, 0
               

               Conread position:
               8-186
               

               Cow position:
               chr1:20125974-20125797 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               135
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               62, 98
               

               Conread position:
               8-186
               

               Cow position:
               chr1:70416581-70416755 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               145
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               8-191
               

               Cow position:
               chr1:196827-197006 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               134
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               8-191
               

               Cow position:
               chr1:852352-852169 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               138
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               8-191
               

               Cow position:
               chr1:6826113-6826297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               42, 21
               

               Conread position:
               8-191
               

               Cow position:
               chr1:22192949-22192768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               55, 42
               

               Conread position:
               8-191
               

               Cow position:
               chr1:35162584-35162409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               134
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               8-191
               

               Cow position:
               chr1:43855468-43855300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               137
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               8-191
               

               Cow position:
               chr1:55230152-55229975 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               8-191
               

               Cow position:
               chr1:71119700-71119520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               142
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               8-191
               

               Cow position:
               chr1:73551323-73551511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               148
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               45, 64
               

               Conread position:
               8-191
               

               Cow position:
               chr1:81568850-81569029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               8-191
               

               Cow position:
               chr1:84811762-84811940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               131
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               8-191
               

               Cow position:
               chr1:90879561-90879738 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               133
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               164, 61
               

               Conread position:
               8-191
               

               Cow position:
               chr1:99642190-99642368 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               8-191
               

               Cow position:
               chr1:101507529-101507359 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               138
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               8-191
               

               Cow position:
               chr1:102648459-102648277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               141
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               8-192
               

               Cow position:
               chr1:56477764-56477590 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               139
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               8-192
               

               Cow position:
               chr1:61005381-61005564 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               135
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               127, 0
               

               Conread position:
               8-192
               

               Cow position:
               chr1:73719650-73719459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               143
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               8-193
               

               Cow position:
               chr1:51394597-51394415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               132
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               8-193
               

               Cow position:
               chr1:102754030-102753855 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               137
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               172, 39
               

               Conread position:
               8-194
               

               Cow position:
               chr1:102756256-102756437 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               8-198
               

               Cow position:
               chr1:92792234-92792044 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               60, 130
               

               Conread position:
               8-200
               

               Cow position:
               chr1:43872130-43872329 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               146
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               53, 135
               

               Conread position:
               8-201
               

               Cow position:
               chr1:22526053-22525868 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               137
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               8-203
               

               Cow position:
               chr1:65103808-65103609 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               43, 114
               

               Conread position:
               8-206
               

               Cow position:
               chr1:1802349-1802147 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               149, 0
               

               Conread position:
               8-208
               

               Cow position:
               chr1:500355-500159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               143
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               8-210
               

               Cow position:
               chr1:92075659-92075469 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               146
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               8-232
               

               Cow position:
               chr1:101525741-101525969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               59, 202
               

               Conread position:
               9-130
               

               Cow position:
               chr1:81611503-81611379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               126
               

               Alignm identity:
               101
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               97, 59
               

               Conread position:
               9-148
               

               Cow position:
               chr1:67674430-67674561 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               110
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               9-170
               

               Cow position:
               chr1:102797817-102797978 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               125
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               9-181
               

               Cow position:
               chr1:4512156-4511994 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               126
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               9-181
               

               Cow position:
               chr1:24656434-24656254 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               141
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               44, 87
               

               Conread position:
               9-182
               

               Cow position:
               chr1:53623132-53622966 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               130
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               9-183
               

               Cow position:
               chr1:46693473-46693647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               123
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               70, 94
               

               Conread position:
               9-184
               

               Cow position:
               chr1:43352475-43352648 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               144
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               150, 0
               

               Conread position:
               9-184
               

               Cow position:
               chr1:88391282-88391109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               135
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               9, 70
               

               Conread position:
               9-189
               

               Cow position:
               chr1:69940646-69940822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               51, 60
               

               Conread position:
               9-191
               

               Cow position:
               chr1:3923626-3923801 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               9-191
               

               Cow position:
               chr1:24132885-24133061 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               10-140
               

               Cow position:
               chr1:54645609-54645477 (view UCSC Genome Browser custom track)
               

               Alignm length:
               133
               

               Alignm identity:
               108
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               49, 0
               

               Conread position:
               10-148
               

               Cow position:
               chr1:63212080-63212217 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               111
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               47, 96
               

               Conread position:
               10-148
               

               Cow position:
               chr1:91743286-91743420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               104
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               10-155
               

               Cow position:
               chr1:362935-362786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               121
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               46, 34
               

               Conread position:
               10-177
               

               Cow position:
               chr1:101267824-101267990 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               130
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               140, 0
               

               Conread position:
               10-179
               

               Cow position:
               chr1:1347456-1347624 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               120
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               10-179
               

               Cow position:
               chr1:56225959-56225796 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               127
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               10-181
               

               Cow position:
               chr1:15628456-15628291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               127
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               10-181
               

               Cow position:
               chr1:30862235-30862400 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               129
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               55, 127
               

               Conread position:
               10-182
               

               Cow position:
               chr1:5821693-5821521 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               122
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               10-183
               

               Cow position:
               chr1:4524334-4524161 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               128
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               67, 31
               

               Conread position:
               10-183
               

               Cow position:
               chr1:21561197-21561019 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               131
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               10-183
               

               Cow position:
               chr1:31794829-31794998 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               126
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               139, 0
               

               Conread position:
               10-184
               

               Cow position:
               chr1:4444662-4444836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               122
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               10-184
               

               Cow position:
               chr1:11488979-11489155 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               134
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               152, 0
               

               Conread position:
               10-184
               

               Cow position:
               chr1:61011352-61011187 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               140
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               10-184
               

               Cow position:
               chr1:98897511-98897688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               10-191
               

               Cow position:
               chr1:20667571-20667743 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               10-192
               

               Cow position:
               chr1:70344224-70344038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               130
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               10-202
               

               Cow position:
               chr1:96201138-96201330 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               149
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               174, 97
               

               Conread position:
               10-207
               

               Cow position:
               chr1:23968888-23969074 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               144
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               185, 35
               

               Conread position:
               11-131
               

               Cow position:
               chr1:73397895-73398015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               121
               

               Alignm identity:
               100
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               11-133
               

               Cow position:
               chr1:83222164-83222041 (view UCSC Genome Browser custom track)
               

               Alignm length:
               125
               

               Alignm identity:
               105
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               59, 8
               

               Conread position:
               11-133
               

               Cow position:
               chr1:95809731-95809606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               126
               

               Alignm identity:
               99
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               11-139
               

               Cow position:
               chr1:22394497-22394624 (view UCSC Genome Browser custom track)
               

               Alignm length:
               129
               

               Alignm identity:
               102
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               11-145
               

               Cow position:
               chr1:45505758-45505882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               106
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               11-155
               

               Cow position:
               chr1:3154851-3154999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               114
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               104, 0
               

               Conread position:
               11-158
               

               Cow position:
               chr1:44321421-44321566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               113
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               11-161
               

               Cow position:
               chr1:40077966-40077823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               113
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               11-161
               

               Cow position:
               chr1:94712987-94713136 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               112
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               11-167
               

               Cow position:
               chr1:60403945-60403791 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               117
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               146, 0
               

               Conread position:
               11-167
               

               Cow position:
               chr1:100513073-100512920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               121
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               85, 0
               

               Conread position:
               11-168
               

               Cow position:
               chr1:3244390-3244233 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               115
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               11-173
               

               Cow position:
               chr1:70146732-70146894 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               127
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               11-173
               

               Cow position:
               chr1:78034729-78034885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               124
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               11-173
               

               Cow position:
               chr1:90904581-90904739 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               119
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               11-175
               

               Cow position:
               chr1:4573901-4573739 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               127
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               11-175
               

               Cow position:
               chr1:46939701-46939870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               11-175
               

               Cow position:
               chr1:63905088-63905244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               127
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               11-176
               

               Cow position:
               chr1:85339553-85339401 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               123
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               11-177
               

               Cow position:
               chr1:36018607-36018764 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               127
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               11-178
               

               Cow position:
               chr1:6398953-6398786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               116
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               11-178
               

               Cow position:
               chr1:69532350-69532511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               126
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               11-178
               

               Cow position:
               chr1:75411660-75411827 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               118
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               11-179
               

               Cow position:
               chr1:45315455-45315625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               131
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               11-179
               

               Cow position:
               chr1:75250288-75250124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               127
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               11-179
               

               Cow position:
               chr1:98467978-98467813 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               14, 140
               

               Conread position:
               11-180
               

               Cow position:
               chr1:5200238-5200407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               118
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               11-180
               

               Cow position:
               chr1:86486855-86486686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               117
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               11-181
               

               Cow position:
               chr1:31340592-31340762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               130
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               11-181
               

               Cow position:
               chr1:39683966-39684136 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               50, 94
               

               Conread position:
               11-181
               

               Cow position:
               chr1:56913356-56913520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               11-181
               

               Cow position:
               chr1:68855342-68855176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               124
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               11-181
               

               Cow position:
               chr1:73534463-73534632 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               132
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               72, 0
               

               Conread position:
               11-181
               

               Cow position:
               chr1:78782162-78781984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               138
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               80, 168
               

               Conread position:
               11-181
               

               Cow position:
               chr1:89297932-89298101 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               132
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               105, 0
               

               Conread position:
               11-181
               

               Cow position:
               chr1:89301541-89301710 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               132
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               105, 0
               

               Conread position:
               11-182
               

               Cow position:
               chr1:13637489-13637655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               125
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               11-182
               

               Cow position:
               chr1:41027248-41027083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               130
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               68, 44
               

               Conread position:
               11-182
               

               Cow position:
               chr1:48618071-48618236 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               11-182
               

               Cow position:
               chr1:49824889-49825058 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               128
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               145, 44
               

               Conread position:
               11-182
               

               Cow position:
               chr1:50930804-50930967 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               130
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               11-182
               

               Cow position:
               chr1:60603394-60603569 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               11-182
               

               Cow position:
               chr1:78857150-78857321 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               126
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               11-182
               

               Cow position:
               chr1:81481209-81481374 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               11-182
               

               Cow position:
               chr1:87197996-87197828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               131
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               11-182
               

               Cow position:
               chr1:89449074-89448908 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               123
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               11-183
               

               Cow position:
               chr1:1496351-1496525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               40, 63
               

               Conread position:
               11-183
               

               Cow position:
               chr1:1499514-1499686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               125
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               11-183
               

               Cow position:
               chr1:2975813-2975989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               135
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               11-183
               

               Cow position:
               chr1:6590213-6590040 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               136
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               11-183
               

               Cow position:
               chr1:14567466-14567628 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               128
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               11-183
               

               Cow position:
               chr1:21681358-21681530 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               120
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               11-183
               

               Cow position:
               chr1:34001219-34001054 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               132
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               115, 44
               

               Conread position:
               11-183
               

               Cow position:
               chr1:47658524-47658352 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               131
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               11-183
               

               Cow position:
               chr1:50708329-50708157 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               121
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               11-183
               

               Cow position:
               chr1:63992156-63992329 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               132
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               44, 105
               

               Conread position:
               11-183
               

               Cow position:
               chr1:69227273-69227434 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               128
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               11-183
               

               Cow position:
               chr1:81391098-81390929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               135
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               73, 95
               

               Conread position:
               11-183
               

               Cow position:
               chr1:86056902-86057065 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               127
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               11-183
               

               Cow position:
               chr1:96518878-96518700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               133
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               48, 150
               

               Conread position:
               11-183
               

               Cow position:
               chr1:96964495-96964325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               130
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               147, 0
               

               Conread position:
               11-183
               

               Cow position:
               chr1:101791941-101792112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               129
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               64, 88
               

               Conread position:
               11-184
               

               Cow position:
               chr1:22035784-22035617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               133
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               11-184
               

               Cow position:
               chr1:31630107-31630281 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               11-184
               

               Cow position:
               chr1:34160004-34159841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               136
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               117, 42
               

               Conread position:
               11-184
               

               Cow position:
               chr1:45223752-45223587 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               11-184
               

               Cow position:
               chr1:60564549-60564371 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               125
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               11-184
               

               Cow position:
               chr1:89437552-89437708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               133
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               11-184
               

               Cow position:
               chr1:101177698-101177521 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               130
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               11-185
               

               Cow position:
               chr1:18936661-18936829 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               132
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               11-187
               

               Cow position:
               chr1:71945904-71946081 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               128
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               59, 9
               

               Conread position:
               11-187
               

               Cow position:
               chr1:77685802-77685979 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               137
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               168, 0
               

               Conread position:
               11-187
               

               Cow position:
               chr1:97144295-97144461 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               140
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               127, 39
               

               Conread position:
               11-188
               

               Cow position:
               chr1:76612956-76613133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               141
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               11-189
               

               Cow position:
               chr1:1605955-1606133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               131
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               59, 131
               

               Conread position:
               12-120
               

               Cow position:
               chr1:84925767-84925659 (view UCSC Genome Browser custom track)
               

               Alignm length:
               109
               

               Alignm identity:
               89
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               12-131
               

               Cow position:
               chr1:67743563-67743677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               120
               

               Alignm identity:
               99
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               12-146
               

               Cow position:
               chr1:3271324-3271191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               106
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               65, 126
               

               Conread position:
               12-146
               

               Cow position:
               chr1:10523877-10523744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               103
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               12-150
               

               Cow position:
               chr1:709725-709860 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               112
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               39, 103
               

               Conread position:
               12-154
               

               Cow position:
               chr1:33720279-33720137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               109
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               12-155
               

               Cow position:
               chr1:3666853-3666996 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               118
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               12-168
               

               Cow position:
               chr1:56225644-56225491 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               115
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               68, 43
               

               Conread position:
               12-170
               

               Cow position:
               chr1:88926204-88926362 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               114
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               12-171
               

               Cow position:
               chr1:76415701-76415859 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               113
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               12-175
               

               Cow position:
               chr1:88397667-88397830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               115
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               12-176
               

               Cow position:
               chr1:29671044-29671210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               119
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               12-179
               

               Cow position:
               chr1:6790949-6790784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               127
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               120, 0
               

               Conread position:
               12-179
               

               Cow position:
               chr1:81668637-81668806 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               43, 68
               

               Conread position:
               12-179
               

               Cow position:
               chr1:98583923-98583763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               130
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               150, 43
               

               Conread position:
               12-180
               

               Cow position:
               chr1:22943853-22944014 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               124
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               12-180
               

               Cow position:
               chr1:98413954-98413782 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               128
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               12-181
               

               Cow position:
               chr1:4582728-4582560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               126
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               128, 0
               

               Conread position:
               12-181
               

               Cow position:
               chr1:50432306-50432475 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               117
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               12-181
               

               Cow position:
               chr1:72105578-72105419 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               135
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               12-181
               

               Cow position:
               chr1:98556943-98557110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               145
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               12-182
               

               Cow position:
               chr1:8793-8623 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               132
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               12-182
               

               Cow position:
               chr1:49334214-49334384 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               138
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               76, 52
               

               Conread position:
               12-182
               

               Cow position:
               chr1:88913495-88913328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               128
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               12-182
               

               Cow position:
               chr1:98380120-98380289 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               120
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               12-183
               

               Cow position:
               chr1:7306144-7305975 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               124
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               12-183
               

               Cow position:
               chr1:16961819-16962003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               142
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               12-183
               

               Cow position:
               chr1:19515442-19515612 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               138
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               47, 18
               

               Conread position:
               12-183
               

               Cow position:
               chr1:38277851-38278021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               136
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               12-183
               

               Cow position:
               chr1:51435957-51435786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               121
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               12-183
               

               Cow position:
               chr1:64803922-64804095 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               133
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               12-183
               

               Cow position:
               chr1:74084013-74084181 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               142, 0
               

               Conread position:
               12-183
               

               Cow position:
               chr1:86579147-86578972 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               47, 145
               

               Conread position:
               12-183
               

               Cow position:
               chr1:87083807-87083636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               124
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               12-183
               

               Cow position:
               chr1:87095036-87095207 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               140
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               12-183
               

               Cow position:
               chr1:99512087-99512258 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               129
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               22, 67
               

               Conread position:
               12-184
               

               Cow position:
               chr1:731792-731970 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               143
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               12-184
               

               Cow position:
               chr1:21955197-21955367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               12-184
               

               Cow position:
               chr1:23633752-23633926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               144, 0
               

               Conread position:
               12-184
               

               Cow position:
               chr1:34771321-34771497 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               134
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               12-184
               

               Cow position:
               chr1:49433086-49433258 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               132
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               12-184
               

               Cow position:
               chr1:73721539-73721366 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               139
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               87, 75
               

               Conread position:
               12-184
               

               Cow position:
               chr1:84595066-84594894 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               130
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               12-184
               

               Cow position:
               chr1:93590412-93590580 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               125
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               12-184
               

               Cow position:
               chr1:102768353-102768187 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               137
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               12-187
               

               Cow position:
               chr1:70483160-70483331 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               132
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               12-191
               

               Cow position:
               chr1:15334063-15333894 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               138
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               12-197
               

               Cow position:
               chr1:101692050-101691871 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               138
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               173, 43
               

               Conread position:
               13-149
               

               Cow position:
               chr1:75227151-75227279 (view UCSC Genome Browser custom track)
               

               Alignm length:
               137
               

               Alignm identity:
               106
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               13-156
               

               Cow position:
               chr1:49358225-49358082 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               113
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               21, 11
               

               Conread position:
               13-160
               

               Cow position:
               chr1:48206363-48206506 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               110
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               13-181
               

               Cow position:
               chr1:31348261-31348428 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               129
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               13-183
               

               Cow position:
               chr1:52496947-52496778 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               129
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               122, 0
               

               Conread position:
               13-184
               

               Cow position:
               chr1:96272843-96273017 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               131
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               37, 95
               

               Conread position:
               13-185
               

               Cow position:
               chr1:72011648-72011808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               128
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               13-203
               

               Cow position:
               chr1:73494417-73494610 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               141
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               14-141
               

               Cow position:
               chr1:100152457-100152327 (view UCSC Genome Browser custom track)
               

               Alignm length:
               132
               

               Alignm identity:
               102
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               47, 113
               

               Conread position:
               14-153
               

               Cow position:
               chr1:96362262-96362389 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               111
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               14-156
               

               Cow position:
               chr1:42404322-42404169 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               122
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               14-156
               

               Cow position:
               chr1:80385312-80385453 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               105
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               14-159
               

               Cow position:
               chr1:46795931-46795789 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               112
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               14-163
               

               Cow position:
               chr1:61247540-61247391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               110
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               14-172
               

               Cow position:
               chr1:75745036-75744880 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               119
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               14-177
               

               Cow position:
               chr1:1053755-1053594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               122
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               112, 0
               

               Conread position:
               14-179
               

               Cow position:
               chr1:10674326-10674162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               122
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               128, 27
               

               Conread position:
               14-180
               

               Cow position:
               chr1:21093292-21093127 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               123
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               86, 0
               

               Conread position:
               14-180
               

               Cow position:
               chr1:42256330-42256492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               120
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               14-181
               

               Cow position:
               chr1:100552139-100551981 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               129
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               141, 41
               

               Conread position:
               14-182
               

               Cow position:
               chr1:1956161-1956325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               130
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               14-182
               

               Cow position:
               chr1:5751488-5751321 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               130
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               14-182
               

               Cow position:
               chr1:12090519-12090358 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               9, 0
               
14-182UCSC Genome Browser

               Conread position:
               
               

               Cow position:
               chr1:52435448-52435280 (view  custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               132
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               0, 0
               
14-182UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:chr1:68618762-68618924 (view  custom track)

               
               
               
Alignm length:170

               
               
               
Alignm identity:124

               
               
               
Alignm E-value:3e-21

               
               
               
Alignm gaps (pig, cow):144, 39
14-182UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:chr1:95049690-95049856 (view  custom track)

               
               
               
Alignm length:169

               
               
               
Alignm identity:131

               
               
               
Alignm E-value:3e-33

               
               
               
Alignm gaps (pig, cow):145, 0

               
               
               Conread position:14-182
               
               
               Cow position:chr1:98512114-98511935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):45, 95

               
               
               Conread position:14-182
               
               
               Cow position:chr1:100852880-100852717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:14-183
               
               
               Cow position:chr1:7748391-7748220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:14-183
               
               
               Cow position:chr1:7752555-7752386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-183
               
               
               Cow position:chr1:12222431-12222600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):69, 80

               
               
               Conread position:14-183
               
               
               Cow position:chr1:22461066-22461231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:14-183
               
               
               Cow position:chr1:46031136-46030967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):53, 67

               
               
               Conread position:14-183
               
               
               Cow position:chr1:89076448-89076626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:14-184
               
               
               Cow position:chr1:49317328-49317490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:14-184
               
               
               Cow position:chr1:53370259-53370091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):146, 0

               
               
               Conread position:14-184
               
               
               Cow position:chr1:67529229-67529061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:14-184
               
               
               Cow position:chr1:78079896-78079725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):84, 41

               
               
               Conread position:14-185
               
               
               Cow position:chr1:13828412-13828581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):35, 60

               
               
               Conread position:14-185
               
               
               Cow position:chr1:86113223-86113395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:14-186
               
               
               Cow position:chr1:38419201-38419027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:14-188
               
               
               Cow position:chr1:38055331-38055498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:14-191
               
               
               Cow position:chr1:72034753-72034925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:15-177
               
               
               Cow position:chr1:94823217-94823379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:15-181
               
               
               Cow position:chr1:65030242-65030076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:15-184
               
               
               Cow position:chr1:6381948-6381778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):54, 97

               
               
               Conread position:16-149
               
               
               Cow position:chr1:93385247-93385116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:16-149
               
               
               Cow position:chr1:95057214-95057084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):115, 11

               
               
               Conread position:18-148
               
               
               Cow position:chr1:41953830-41953960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:18-169
               
               
               Cow position:chr1:48301281-48301430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:18-179
               
               
               Cow position:chr1:63079171-63079021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:18-183
               
               
               Cow position:chr1:1878192-1878027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:18-183
               
               
               Cow position:chr1:38706683-38706847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:18-183
               
               
               Cow position:chr1:54694793-54694627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:18-184
               
               
               Cow position:chr1:15206705-15206866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:18-184
               
               
               Cow position:chr1:100421990-100421831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:18-185
               
               
               Cow position:chr1:77739893-77739727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:18-191
               
               
               Cow position:chr1:64302080-64302245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):117, 37

               
               
               Conread position:19-138
               
               
               Cow position:chr1:59675771-59675655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-144
               
               
               Cow position:chr1:31807030-31806907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:19-147
               
               
               Cow position:chr1:50843680-50843809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:19-149
               
               
               Cow position:chr1:42292094-42291966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:100
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-149
               
               
               Cow position:chr1:91810913-91810787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-154
               
               
               Cow position:chr1:82917306-82917439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-155
               
               
               Cow position:chr1:61636599-61636734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:19-174
               
               
               Cow position:chr1:46004446-46004297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-180
               
               
               Cow position:chr1:22828405-22828564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):138, 36

               
               
               Conread position:19-180
               
               
               Cow position:chr1:52662006-52662163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:19-182
               
               
               Cow position:chr1:10778726-10778571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-183
               
               
               Cow position:chr1:2075182-2075343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:19-183
               
               
               Cow position:chr1:36688208-36688371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:19-184
               
               
               Cow position:chr1:53521082-53520917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):88, 34

               
               
               Conread position:19-184
               
               
               Cow position:chr1:96183815-96183983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):147, 48

               
               
               Conread position:19-191
               
               
               Cow position:chr1:24534093-24534255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:19-201
               
               
               Cow position:chr1:69694830-69695002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):159, 33

               
               
               Conread position:20-138
               
               
               Cow position:chr1:40160547-40160663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:93
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:20-154
               
               
               Cow position:chr1:79001674-79001812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):34, 15

               
               
               Conread position:20-160
               
               
               Cow position:chr1:91811949-91811807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:20-168
               
               
               Cow position:chr1:91023299-91023445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:20-182
               
               
               Cow position:chr1:53458865-53458706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):54, 17

               
               
               Conread position:20-182
               
               
               Cow position:chr1:87220618-87220468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:20-183
               
               
               Cow position:chr1:48581297-48581136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:20-183
               
               
               Cow position:chr1:50963960-50964123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):49, 34

               
               
               Conread position:20-183
               
               
               Cow position:chr1:70422474-70422311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:20-184
               
               
               Cow position:chr1:42868779-42868930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:20-191
               
               
               Cow position:chr1:186105-186275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):44, 115

               
               
               Conread position:20-191
               
               
               Cow position:chr1:61741796-61741968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):44, 134

               
               
               Conread position:20-201
               
               
               Cow position:chr1:22730900-22730724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:21-184
               
               
               Cow position:chr1:90975910-90976082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):40, 81

               
               
               Conread position:22-183
               
               
               Cow position:chr1:52487813-52487973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:22-191
               
               
               Cow position:chr1:3605718-3605887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):96, 56

               
               
               Conread position:25-149
               
               
               Cow position:chr1:100375985-100375863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:97
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:26-177
               
               
               Cow position:chr1:11913713-11913866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:26-180
               
               
               Cow position:chr1:78810045-78809886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:26-182
               
               
               Cow position:chr1:52039794-52039646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:26-184
               
               
               Cow position:chr1:2462537-2462389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:27-148
               
               
               Cow position:chr1:3965996-3965875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:94
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:27-182
               
               
               Cow position:chr1:81613553-81613397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):20, 37

               
               
               Conread position:27-183
               
               
               Cow position:chr1:29474188-29474340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:27-183
               
               
               Cow position:chr1:61846312-61846151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:27-183
               
               
               Cow position:chr1:97232133-97231967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:27-184
               
               
               Cow position:chr1:9679322-9679172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):86, 37

               
               
               Conread position:28-181
               
               
               Cow position:chr1:46172768-46172614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:29-187
               
               
               Cow position:chr1:67539720-67539561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):133, 118

               
               
               Conread position:30-184
               
               
               Cow position:chr1:84203668-84203520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:30-207
               
               
               Cow position:chr1:86073750-86073581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:31-183
               
               
               Cow position:chr1:102468458-102468610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:34-161
               
               
               Cow position:chr1:37543630-37543757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:34-177
               
               
               Cow position:chr1:32001169-32001306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:34-179
               
               
               Cow position:chr1:40530948-40531091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):43, 30

               
               
               Conread position:35-149
               
               
               Cow position:chr1:74011069-74010953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:35-181
               
               
               Cow position:chr1:79409603-79409460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:35-191
               
               
               Cow position:chr1:93554989-93554835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:36-184
               
               
               Cow position:chr1:24570793-24570941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:37-148
               
               
               Cow position:chr1:30194703-30194592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:90
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:37-182
               
               
               Cow position:chr1:7971566-7971419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):18, 5

               
               
               Conread position:38-154
               
               
               Cow position:chr1:89341832-89341944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:39-179
               
               
               Cow position:chr1:1242032-1242166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:41-183
               
               
               Cow position:chr1:8353528-8353386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:41-183
               
               
               Cow position:chr1:57359611-57359471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:41-184
               
               
               Cow position:chr1:28470979-28470832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:41-184
               
               
               Cow position:chr1:77880582-77880724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):29, 113

               
               
               Conread position:41-185
               
               
               Cow position:chr1:78067923-78068064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:42-147
               
               
               Cow position:chr1:95962884-95962777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:89
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:42-184
               
               
               Cow position:chr1:24406748-24406891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):19, 13

               
               
               Conread position:42-184
               
               
               Cow position:chr1:74081835-74081975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:42-191
               
               
               Cow position:chr1:43311885-43312032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:42-191
               
               
               Cow position:chr1:45873922-45874079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:42-201
               
               
               Cow position:chr1:38205622-38205464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):35, 13

               
               
               Conread position:43-185
               
               
               Cow position:chr1:19997829-19997967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:44-214
               
               
               Cow position:chr1:87934127-87934294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:45-182
               
               
               Cow position:chr1:36875171-36875036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:45-184
               
               
               Cow position:chr1:8624305-8624443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:46-184
               
               
               Cow position:chr1:92603163-92603025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:47-183
               
               
               Cow position:chr1:4032773-4032639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:47-258
               
               
               Cow position:chr1:90817135-90816923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):30, 137

               
               
               Conread position:48-149
               
               
               Cow position:chr1:60478570-60478670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:84
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:48-173
               
               
               Cow position:chr1:99024089-99024214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-179
               
               
               Cow position:chr1:81580319-81580189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:48-179
               
               
               Cow position:chr1:85549936-85550067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):15, 29

               
               
               Conread position:48-180
               
               
               Cow position:chr1:6894353-6894486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:102
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):22, 33

               
               
               Conread position:48-182
               
               
               Cow position:chr1:44835643-44835784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:48-182
               
               
               Cow position:chr1:95153364-95153231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:48-183
               
               
               Cow position:chr1:67918899-67918764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr1:64019381-64019515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr1:99221214-99221345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:48-189
               
               
               Cow position:chr1:23055189-23055047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:48-190
               
               
               Cow position:chr1:65909652-65909509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):137, 39

               
               
               Conread position:48-191
               
               
               Cow position:chr1:8347265-8347122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-191
               
               
               Cow position:chr1:46100698-46100843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:48-191
               
               
               Cow position:chr1:68127049-68127191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:48-191
               
               
               Cow position:chr1:68672460-68672598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:48-225
               
               
               Cow position:chr1:19304712-19304539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:49-154
               
               
               Cow position:chr1:17029088-17029193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:87
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:49-182
               
               
               Cow position:chr1:48769944-48769810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:49-182
               
               
               Cow position:chr1:95388609-95388475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):22, 14

               
               
               Conread position:49-205
               
               
               Cow position:chr1:80336109-80336264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:50-184
               
               
               Cow position:chr1:77683487-77683358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:51-170
               
               
               Cow position:chr1:86383667-86383786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:92
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:51-184
               
               
               Cow position:chr1:45478724-45478853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:51-184
               
               
               Cow position:chr1:71915979-71916113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):10, 117

               
               
               Conread position:51-184
               
               
               Cow position:chr1:97696884-97696753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):10, 100

               
               
               Conread position:52-183
               
               
               Cow position:chr1:19855290-19855164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:52-184
               
               
               Cow position:chr1:46765013-46764882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):25, 10

               
               
               Conread position:53-182
               
               
               Cow position:chr1:56711464-56711591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):23, 105

               
               
               Conread position:53-184
               
               
               Cow position:chr1:80422409-80422282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:55-168
               
               
               Cow position:chr1:98594700-98594587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:55-184
               
               
               Cow position:chr1:7908172-7908043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:97
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:55-184
               
               
               Cow position:chr1:55194112-55194240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:55-184
               
               
               Cow position:chr1:84768744-84768873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:55-187
               
               
               Cow position:chr1:47883481-47883612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:102
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):9, 81

               
               
               Conread position:56-177
               
               
               Cow position:chr1:22467451-22467572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):21, 66

               
               
               Conread position:56-178
               
               
               Cow position:chr1:42822404-42822283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:56-178
               
               
               Cow position:chr1:97779125-97779004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:56-179
               
               
               Cow position:chr1:12989415-12989290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:56-181
               
               
               Cow position:chr1:78697637-78697763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:56-183
               
               
               Cow position:chr1:26912655-26912780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:98
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:56-183
               
               
               Cow position:chr1:74928020-74927891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr1:48730699-48730823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr1:65881939-65881813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr1:77892270-77892144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):13, 95

               
               
               Conread position:56-184
               
               
               Cow position:chr1:82942418-82942287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr1:82944140-82944271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr1:98576181-98576053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:108
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-191
               
               
               Cow position:chr1:23512527-23512660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:56-201
               
               
               Cow position:chr1:69445466-69445318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:56-201
               
               
               Cow position:chr1:100569290-100569145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:57-161
               
               
               Cow position:chr1:76080938-76080836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:57-174
               
               
               Cow position:chr1:1875520-1875404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:57-183
               
               
               Cow position:chr1:89741862-89741993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:57-184
               
               
               Cow position:chr1:6972658-6972532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:57-187
               
               
               Cow position:chr1:49839617-49839488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:58-184
               
               
               Cow position:chr1:76436612-76436486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:59-161
               
               
               Cow position:chr1:13752316-13752418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:84
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:59-179
               
               
               Cow position:chr1:45673885-45673765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:59-183
               
               
               Cow position:chr1:35165337-35165212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:60-183
               
               
               Cow position:chr1:56229369-56229245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:61-183
               
               
               Cow position:chr1:7793393-7793514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:63-181
               
               
               Cow position:chr1:3776209-3776326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:93
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:64-171
               
               
               Cow position:chr1:30417922-30418029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:87
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-177
               
               
               Cow position:chr1:54157422-54157309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-182
               
               
               Cow position:chr1:95974525-95974408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:64-184
               
               
               Cow position:chr1:101632210-101632331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:64-188
               
               
               Cow position:chr1:94261661-94261538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:64-191
               
               
               Cow position:chr1:3914793-3914919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:64-197
               
               
               Cow position:chr1:97939083-97938950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-208
               
               
               Cow position:chr1:39417989-39418128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:65-182
               
               
               Cow position:chr1:49299787-49299666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:97
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:65-184
               
               
               Cow position:chr1:5636932-5637053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:65-184
               
               
               Cow position:chr1:58037143-58037025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:65-184
               
               
               Cow position:chr1:69264933-69264816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:65-184
               
               
               Cow position:chr1:82880769-82880652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:65-185
               
               
               Cow position:chr1:28985441-28985567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:66-187
               
               
               Cow position:chr1:68676486-68676364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:99
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):15, 94

               
               
               Conread position:67-179
               
               
               Cow position:chr1:84288526-84288414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:94
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:67-184
               
               
               Cow position:chr1:42360411-42360292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:67-184
               
               
               Cow position:chr1:64706615-64706499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:67-191
               
               
               Cow position:chr1:42178868-42178744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:68-177
               
               
               Cow position:chr1:32787832-32787941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:94
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):46, 78

               
               
               Conread position:70-182
               
               
               Cow position:chr1:33812335-33812224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:92
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:70-184
               
               
               Cow position:chr1:81809019-81809132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:92
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:71-184
               
               
               Cow position:chr1:85712558-85712446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:74-183
               
               
               Cow position:chr1:22153809-22153701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:74-184
               
               
               Cow position:chr1:66430407-66430299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:89
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:74-201
               
               
               Cow position:chr1:72285952-72286078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:98
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:75-191
               
               
               Cow position:chr1:95215075-95215191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:91
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-148
               
               
               Cow position:chr10:21422006-21422147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:1-181
               
               
               Cow position:chr10:38799998-38799823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):9, 149

               
               
               Conread position:1-182
               
               
               Cow position:chr10:46327845-46327669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:1-183
               
               
               Cow position:chr10:2973929-2974111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):68, 29

               
               
               Conread position:1-183
               
               
               Cow position:chr10:21923362-21923543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:2-182
               
               
               Cow position:chr10:25980-25802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):9, 54

               
               
               Conread position:2-182
               
               
               Cow position:chr10:63675077-63675257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-183
               
               
               Cow position:chr10:41198049-41197868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-184
               
               
               Cow position:chr10:6664190-6664010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):17, 54

               
               
               Conread position:3-140
               
               
               Cow position:chr10:47673152-47673297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:3-143
               
               
               Cow position:chr10:56996557-56996691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:3-154
               
               
               Cow position:chr10:8281421-8281270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-155
               
               
               Cow position:chr10:7309295-7309447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-156
               
               
               Cow position:chr10:8870972-8870819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-171
               
               
               Cow position:chr10:19709538-19709368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):56, 161

               
               
               Conread position:3-171
               
               
               Cow position:chr10:43487870-43487705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:3-173
               
               
               Cow position:chr10:35486281-35486450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):167, 0

               
               
               Conread position:3-174
               
               
               Cow position:chr10:46319133-46318963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:3-178
               
               
               Cow position:chr10:11282007-11282186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:3-178
               
               
               Cow position:chr10:28721932-28721768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:3-179
               
               
               Cow position:chr10:14622537-14622358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):80, 161

               
               
               Conread position:3-182
               
               
               Cow position:chr10:3708290-3708102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:3-182
               
               
               Cow position:chr10:44863802-44863623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):31, 38

               
               
               Conread position:3-183
               
               
               Cow position:chr10:10219801-10219616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr10:11059911-11059733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr10:24004309-24004489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr10:35637988-35638162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr10:43676317-43676509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):52, 20

               
               
               Conread position:3-183
               
               
               Cow position:chr10:46151022-46150848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr10:46575660-46575488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr10:51284142-51283962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr10:52569749-52569569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-184
               
               
               Cow position:chr10:15241137-15241317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:3-184
               
               
               Cow position:chr10:16645033-16645210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:3-184
               
               
               Cow position:chr10:24312738-24312910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:3-184
               
               
               Cow position:chr10:31528121-31527951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:3-185
               
               
               Cow position:chr10:13368511-13368327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:3-185
               
               
               Cow position:chr10:44834329-44834147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-185
               
               
               Cow position:chr10:62219993-62219808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:3-188
               
               
               Cow position:chr10:64140144-64140327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):104, 84

               
               
               Conread position:3-191
               
               
               Cow position:chr10:45337837-45337649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-194
               
               
               Cow position:chr10:50051918-50052109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):170, 149

               
               
               Conread position:3-206
               
               
               Cow position:chr10:33185478-33185275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-231
               
               
               Cow position:chr10:58642154-58642377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):157, 0

               
               
               Conread position:5-148
               
               
               Cow position:chr10:34903625-34903488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:5-182
               
               
               Cow position:chr10:37295519-37295694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:5-182
               
               
               Cow position:chr10:45371209-45371035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:5-184
               
               
               Cow position:chr10:29328246-29328416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:7-154
               
               
               Cow position:chr10:17797568-17797719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:7-164
               
               
               Cow position:chr10:23912362-23912514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:7-173
               
               
               Cow position:chr10:37708876-37709029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:7-174
               
               
               Cow position:chr10:12253279-12253443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):113, 40

               
               
               Conread position:7-177
               
               
               Cow position:chr10:11463510-11463683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:7-183
               
               
               Cow position:chr10:66004027-66003851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:7-192
               
               
               Cow position:chr10:64285650-64285826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-115
               
               
               Cow position:chr10:17984033-17983926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:88
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-127
               
               
               Cow position:chr10:36945650-36945767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:8-130
               
               
               Cow position:chr10:847079-847205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:101
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-131
               
               
               Cow position:chr10:1255304-1255427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:103
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):9, 28

               
               
               Conread position:8-134
               
               
               Cow position:chr10:55235462-55235588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-135
               
               
               Cow position:chr10:24035870-24035995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-141
               
               
               Cow position:chr10:61146700-61146564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-144
               
               
               Cow position:chr10:25475681-25475549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-145
               
               
               Cow position:chr10:18849672-18849538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:8-147
               
               
               Cow position:chr10:9575900-9576035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr10:6852413-6852275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):72, 53

               
               
               Conread position:8-148
               
               
               Cow position:chr10:17691088-17691225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):59, 7

               
               
               Conread position:8-148
               
               
               Cow position:chr10:22594072-22593934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr10:29166429-29166285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr10:35731379-35731515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr10:60697480-60697614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-149
               
               
               Cow position:chr10:17518696-17518836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:8-149
               
               
               Cow position:chr10:29713299-29713156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):62, 133

               
               
               Conread position:8-149
               
               
               Cow position:chr10:32799108-32799247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:8-154
               
               
               Cow position:chr10:40933913-40933764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:8-155
               
               
               Cow position:chr10:4170537-4170687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):46, 83

               
               
               Conread position:8-155
               
               
               Cow position:chr10:39124284-39124138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:8-155
               
               
               Cow position:chr10:58043978-58044123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:8-156
               
               
               Cow position:chr10:41618331-41618477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:8-156
               
               
               Cow position:chr10:52168966-52169123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:8-160
               
               
               Cow position:chr10:11966695-11966848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):11, 77

               
               
               Conread position:8-161
               
               
               Cow position:chr10:5608104-5607950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):109, 36

               
               
               Conread position:8-161
               
               
               Cow position:chr10:30836883-30837037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:8-163
               
               
               Cow position:chr10:8161655-8161501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:8-164
               
               
               Cow position:chr10:6268826-6268675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):143, 42

               
               
               Conread position:8-164
               
               
               Cow position:chr10:27544601-27544449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-167
               
               
               Cow position:chr10:9959367-9959209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:8-168
               
               
               Cow position:chr10:27136536-27136696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-168
               
               
               Cow position:chr10:28843509-28843350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:8-170
               
               
               Cow position:chr10:3986039-3985880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:8-170
               
               
               Cow position:chr10:19394417-19394580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):62, 146

               
               
               Conread position:8-170
               
               
               Cow position:chr10:37512088-37512248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):75, 46

               
               
               Conread position:8-172
               
               
               Cow position:chr10:10634363-10634207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-172
               
               
               Cow position:chr10:15383479-15383315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-172
               
               
               Cow position:chr10:32649100-32649255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:8-173
               
               
               Cow position:chr10:44730325-44730492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:8-173
               
               
               Cow position:chr10:49142357-49142520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:8-174
               
               
               Cow position:chr10:58807600-58807757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:8-175
               
               
               Cow position:chr10:44764342-44764510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):51, 77

               
               
               Conread position:8-176
               
               
               Cow position:chr10:5784103-5784270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:8-176
               
               
               Cow position:chr10:19679254-19679082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-176
               
               
               Cow position:chr10:37425986-37426149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):11, 49

               
               
               Conread position:8-176
               
               
               Cow position:chr10:37508003-37508163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-177
               
               
               Cow position:chr10:14817012-14817178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):154, 105

               
               
               Conread position:8-178
               
               
               Cow position:chr10:10048826-10048654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):53, 86

               
               
               Conread position:8-178
               
               
               Cow position:chr10:31534887-31534715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):69, 47

               
               
               Conread position:8-178
               
               
               Cow position:chr10:35867868-35868033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:8-178
               
               
               Cow position:chr10:49942621-49942451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr10:17077592-17077756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr10:20133722-20133893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):5, 43

               
               
               Conread position:8-179
               
               
               Cow position:chr10:20391285-20391459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):56, 159

               
               
               Conread position:8-179
               
               
               Cow position:chr10:24096220-24096391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr10:29102193-29102364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):18, 69

               
               
               Conread position:8-179
               
               
               Cow position:chr10:33665991-33665824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr10:52881465-52881637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr10:66194153-66194323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:8-180
               
               
               Cow position:chr10:38241229-38241063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:8-180
               
               
               Cow position:chr10:38942584-38942412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-180
               
               
               Cow position:chr10:58149021-58149189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:143
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr10:10148799-10148628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr10:10575458-10575296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr10:24915570-24915739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr10:35017887-35017702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr10:35248992-35249155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr10:36531576-36531750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr10:37795733-37795919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):26, 12

               
               
               Conread position:8-181
               
               
               Cow position:chr10:40738139-40737974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr10:69564755-69564580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):27, 51

               
               
               Conread position:8-182
               
               
               Cow position:chr10:14093098-14093264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr10:15319052-15318863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr10:17073218-17073386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr10:23500078-23500252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr10:24560840-24561009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr10:28223365-28223192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr10:30929736-30929909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):149, 39

               
               
               Conread position:8-182
               
               
               Cow position:chr10:38195825-38195994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr10:44513112-44513284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):11, 46

               
               
               Conread position:8-182
               
               
               Cow position:chr10:47690546-47690366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):45, 10

               
               
               Conread position:8-182
               
               
               Cow position:chr10:48407285-48407116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr10:52296645-52296476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr10:54848926-54848760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr10:62286714-62286535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr10:65904393-65904224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr10:1423981-1423808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr10:5889610-5889785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):64, 36

               
               
               Conread position:8-183
               
               
               Cow position:chr10:9656376-9656545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr10:10027723-10027552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):65, 85

               
               
               Conread position:8-183
               
               
               Cow position:chr10:16830235-16830409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr10:21564898-21564726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr10:23071593-23071767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):162, 152

               
               
               Conread position:8-183
               
               
               Cow position:chr10:26671033-26670871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):62, 42

               
               
               Conread position:8-183
               
               
               Cow position:chr10:31718232-31718406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr10:33195194-33195019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr10:35981741-35981567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr10:38370303-38370477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr10:38430418-38430587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):75, 48

               
               
               Conread position:8-183
               
               
               Cow position:chr10:38944408-38944233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):163, 71

               
               
               Conread position:8-183
               
               
               Cow position:chr10:41408415-41408252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr10:45871667-45871492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr10:46043143-46042971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr10:47182417-47182591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr10:48619865-48620034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr10:55319642-55319473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr10:56080012-56080194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):45, 112

               
               
               Conread position:8-184
               
               
               Cow position:chr10:704838-705019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr10:1976168-1976337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr10:4109727-4109565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr10:5543100-5543272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr10:6516852-6516674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):51, 142

               
               
               Conread position:8-184
               
               
               Cow position:chr10:10138009-10137841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr10:11009568-11009386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr10:16986484-16986308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:145
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr10:17389004-17388816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):55, 100

               
               
               Conread position:8-184
               
               
               Cow position:chr10:17844914-17844743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):31, 53

               
               
               Conread position:8-184
               
               
               Cow position:chr10:23127833-23128010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:148
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):49, 29

               
               
               Conread position:8-184
               
               
               Cow position:chr10:23576689-23576523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr10:24871320-24871141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr10:25150035-25149875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr10:37014785-37014610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:147
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr10:39387597-39387432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr10:40107252-40107081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):50, 55

               
               
               Conread position:8-184
               
               
               Cow position:chr10:42313056-42312879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr10:45658288-45658122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr10:48257127-48257296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr10:48316795-48316970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:145
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):148, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr10:49923217-49923397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr10:50182905-50183067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr10:51289393-51289228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr10:55122958-55122783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:143
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr10:59004510-59004324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr10:62454218-62454393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr10:64042233-64042061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:8-185
               
               
               Cow position:chr10:20485411-20485584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:8-185
               
               
               Cow position:chr10:35862082-35862252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-185
               
               
               Cow position:chr10:44758957-44758784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:8-185
               
               
               Cow position:chr10:55382466-55382290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:8-187
               
               
               Cow position:chr10:60236951-60237120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:8-188
               
               
               Cow position:chr10:64394231-64394050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):175, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr10:10751838-10752019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):149, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr10:32127930-32127732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr10:59009990-59010166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr10:61509798-61509974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr10:63940920-63940743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):58, 72

               
               
               Conread position:8-191
               
               
               Cow position:chr10:65071471-65071281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:8-201
               
               
               Cow position:chr10:21082521-21082341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:8-201
               
               
               Cow position:chr10:25699810-25699610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):57, 47

               
               
               Conread position:8-204
               
               
               Cow position:chr10:15899928-15899735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):162, 47

               
               
               Conread position:8-206
               
               
               Cow position:chr10:49862612-49862422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):181, 47

               
               
               Conread position:8-210
               
               
               Cow position:chr10:57877624-57877421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):20, 176

               
               
               Conread position:9-148
               
               
               Cow position:chr10:15817647-15817781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:9-175
               
               
               Cow position:chr10:2260305-2260130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):47, 28

               
               
               Conread position:9-183
               
               
               Cow position:chr10:56733176-56733011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:9-184
               
               
               Cow position:chr10:52061977-52061797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):46, 30

               
               
               Conread position:9-191
               
               
               Cow position:chr10:19895542-19895368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:9-192
               
               
               Cow position:chr10:30121561-30121374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:9-201
               
               
               Cow position:chr10:1488976-1488792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:10-168
               
               
               Cow position:chr10:15602031-15602189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:10-171
               
               
               Cow position:chr10:2328338-2328178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):57, 22

               
               
               Conread position:10-181
               
               
               Cow position:chr10:22341721-22341555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):156, 53

               
               
               Conread position:10-182
               
               
               Cow position:chr10:49634212-49634045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:10-182
               
               
               Cow position:chr10:55395832-55395998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:10-184
               
               
               Cow position:chr10:30261459-30261626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:10-184
               
               
               Cow position:chr10:35715440-35715622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):106, 57

               
               
               Conread position:10-184
               
               
               Cow position:chr10:57461500-57461333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:10-185
               
               
               Cow position:chr10:41132409-41132240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:147
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:11-126
               
               
               Cow position:chr10:24422026-24422141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-130
               
               
               Cow position:chr10:24862957-24863077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:11-149
               
               
               Cow position:chr10:60353906-60354035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:11-154
               
               
               Cow position:chr10:4329847-4329991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:11-155
               
               
               Cow position:chr10:37375599-37375743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-158
               
               
               Cow position:chr10:16641784-16641929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):97, 50

               
               
               Conread position:11-164
               
               
               Cow position:chr10:52152943-52152791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:11-168
               
               
               Cow position:chr10:19503134-19503291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):82, 39

               
               
               Conread position:11-169
               
               
               Cow position:chr10:18751330-18751484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:11-169
               
               
               Cow position:chr10:53698556-53698398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-171
               
               
               Cow position:chr10:56136651-56136491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-174
               
               
               Cow position:chr10:36855981-36856145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:11-177
               
               
               Cow position:chr10:14188466-14188628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):163, 44

               
               
               Conread position:11-177
               
               
               Cow position:chr10:30787479-30787644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:11-179
               
               
               Cow position:chr10:48353796-48353953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:11-180
               
               
               Cow position:chr10:14542018-14541851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:11-180
               
               
               Cow position:chr10:35795496-35795322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):44, 158

               
               
               Conread position:11-181
               
               
               Cow position:chr10:22980834-22980999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-181
               
               
               Cow position:chr10:39258345-39258515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):80, 95

               
               
               Conread position:11-181
               
               
               Cow position:chr10:47670715-47670545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-181
               
               
               Cow position:chr10:54548648-54548492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:11-181
               
               
               Cow position:chr10:57059128-57059303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr10:22390742-22390575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr10:28395160-28395323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr10:38995381-38995207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr10:56828174-56828339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):69, 44

               
               
               Conread position:11-183
               
               
               Cow position:chr10:8853696-8853529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr10:10153151-10152987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr10:35090198-35090026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr10:40999003-40998833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):117, 44

               
               
               Conread position:11-183
               
               
               Cow position:chr10:42123443-42123616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):147, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr10:44771793-44771627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr10:45294993-45295165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr10:46850013-46849841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr10:47559412-47559573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr10:51727280-51727442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr10:51803901-51804071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr10:63484783-63484618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr10:66365450-66365272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr10:6436203-6436036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr10:24830924-24831107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr10:32080413-32080251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr10:32929132-32928952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr10:54699559-54699729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):126, 44

               
               
               Conread position:11-185
               
               
               Cow position:chr10:34674160-34673993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:11-191
               
               
               Cow position:chr10:2857192-2857017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):160, 51

               
               
               Conread position:11-191
               
               
               Cow position:chr10:17567958-17568132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):145, 44

               
               
               Conread position:11-191
               
               
               Cow position:chr10:48512932-48513112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-191
               
               
               Cow position:chr10:50332742-50332563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):159, 76

               
               
               Conread position:11-192
               
               
               Cow position:chr10:12392458-12392640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):59, 76

               
               
               Conread position:11-192
               
               
               Cow position:chr10:32503577-32503395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:11-195
               
               
               Cow position:chr10:15248893-15249081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):161, 0

               
               
               Conread position:11-199
               
               
               Cow position:chr10:11060386-11060565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-203
               
               
               Cow position:chr10:55043494-55043682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):104, 49

               
               
               Conread position:12-127
               
               
               Cow position:chr10:14396509-14396623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:94
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:12-148
               
               
               Cow position:chr10:28571547-28571411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-149
               
               
               Cow position:chr10:19403058-19402920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:12-161
               
               
               Cow position:chr10:21528940-21528787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:12-161
               
               
               Cow position:chr10:21546314-21546161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:12-167
               
               
               Cow position:chr10:57095057-57095207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-168
               
               
               Cow position:chr10:13765019-13765172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):68, 43

               
               
               Conread position:12-171
               
               
               Cow position:chr10:36399903-36400061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:12-171
               
               
               Cow position:chr10:36400938-36401096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:12-173
               
               
               Cow position:chr10:52278869-52278711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):123, 50

               
               
               Conread position:12-174
               
               
               Cow position:chr10:34705424-34705263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:12-177
               
               
               Cow position:chr10:7786918-7786756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):158, 143

               
               
               Conread position:12-178
               
               
               Cow position:chr10:16598836-16598671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:12-178
               
               
               Cow position:chr10:17448061-17448216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:12-178
               
               
               Cow position:chr10:53971958-53972121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):51, 146

               
               
               Conread position:12-179
               
               
               Cow position:chr10:6719122-6718955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-179
               
               
               Cow position:chr10:37174305-37174471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:12-181
               
               
               Cow position:chr10:50109753-50109924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr10:5151497-5151325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):52, 123

               
               
               Conread position:12-182
               
               
               Cow position:chr10:10720527-10720694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr10:20553327-20553162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):136, 41

               
               
               Conread position:12-182
               
               
               Cow position:chr10:33914923-33915087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr10:29188207-29188378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr10:41737437-41737268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr10:45378856-45379027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr10:45965640-45965477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr10:46934633-46934804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr10:49846923-49846752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr10:2709016-2708847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):167, 43

               
               
               Conread position:12-184
               
               
               Cow position:chr10:4184348-4184172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:144
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr10:15868400-15868228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:140
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr10:31004870-31005039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):52, 102

               
               
               Conread position:12-184
               
               
               Cow position:chr10:35605192-35605026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr10:48377250-48377421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr10:52125547-52125708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-185
               
               
               Cow position:chr10:60961091-60960910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:12-185
               
               
               Cow position:chr10:63884090-63883917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):36, 148

               
               
               Conread position:12-191
               
               
               Cow position:chr10:41116045-41115874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:12-191
               
               
               Cow position:chr10:51306481-51306312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:12-201
               
               
               Cow position:chr10:18042330-18042140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):43, 183

               
               
               Conread position:13-130
               
               
               Cow position:chr10:47785137-47785254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:91
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:13-155
               
               
               Cow position:chr10:46236965-46237102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:13-161
               
               
               Cow position:chr10:22972860-22973006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:13-174
               
               
               Cow position:chr10:39410947-39410793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):78, 47

               
               
               Conread position:13-181
               
               
               Cow position:chr10:58638154-58637993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:13-183
               
               
               Cow position:chr10:63276538-63276371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:13-201
               
               
               Cow position:chr10:49168884-49169075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):54, 27

               
               
               Conread position:14-176
               
               
               Cow position:chr10:44122248-44122090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:14-180
               
               
               Cow position:chr10:42746055-42745898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:14-181
               
               
               Cow position:chr10:58718798-58718630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):44, 55

               
               
               Conread position:14-183
               
               
               Cow position:chr10:48814283-48814450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:14-183
               
               
               Cow position:chr10:54776692-54776523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-183
               
               
               Cow position:chr10:64877564-64877734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):161, 0

               
               
               Conread position:14-184
               
               
               Cow position:chr10:19372192-19372360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:14-184
               
               
               Cow position:chr10:50042761-50042584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):51, 155

               
               
               Conread position:14-191
               
               
               Cow position:chr10:46262327-46262157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:14-213
               
               
               Cow position:chr10:68910999-68911189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:15-149
               
               
               Cow position:chr10:60250929-60251067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:15-181
               
               
               Cow position:chr10:17837096-17836931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:15-183
               
               
               Cow position:chr10:69934639-69934799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:15-191
               
               
               Cow position:chr10:61982532-61982354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:16-147
               
               
               Cow position:chr10:17652258-17652396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:112
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):39, 16

               
               
               Conread position:16-184
               
               
               Cow position:chr10:46492841-46493018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:17-166
               
               
               Cow position:chr10:35454802-35454946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:17-184
               
               
               Cow position:chr10:6932340-6932507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:18-152
               
               
               Cow position:chr10:58066047-58066181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:18-158
               
               
               Cow position:chr10:61588118-61588258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:18-160
               
               
               Cow position:chr10:24861454-24861311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):39, 51

               
               
               Conread position:18-183
               
               
               Cow position:chr10:13197685-13197854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:18-184
               
               
               Cow position:chr10:65345325-65345498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:19-148
               
               
               Cow position:chr10:46683541-46683412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):50, 113

               
               
               Conread position:19-149
               
               
               Cow position:chr10:15570347-15570220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-149
               
               
               Cow position:chr10:36775215-36775343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-149
               
               
               Cow position:chr10:41162840-41162968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:99
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:19-154
               
               
               Cow position:chr10:9797770-9797904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:19-154
               
               
               Cow position:chr10:10476557-10476690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-155
               
               
               Cow position:chr10:61171398-61171263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:19-160
               
               
               Cow position:chr10:27258991-27259131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):136, 36

               
               
               Conread position:19-161
               
               
               Cow position:chr10:16417462-16417601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):129, 26

               
               
               Conread position:19-172
               
               
               Cow position:chr10:37971905-37971761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:19-180
               
               
               Cow position:chr10:42637373-42637213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:19-182
               
               
               Cow position:chr10:30522926-30523084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-182
               
               
               Cow position:chr10:46228831-46228667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:19-183
               
               
               Cow position:chr10:62114830-62114665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):155, 0

               
               
               Conread position:19-184
               
               
               Cow position:chr10:13927872-13927710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):13, 35

               
               
               Conread position:19-184
               
               
               Cow position:chr10:21515722-21515893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):34, 111

               
               
               Conread position:19-184
               
               
               Cow position:chr10:23478793-23478959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):125, 34

               
               
               Conread position:19-184
               
               
               Cow position:chr10:26631539-26631385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-184
               
               
               Cow position:chr10:41626734-41626572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:19-184
               
               
               Cow position:chr10:43272901-43273068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:19-184
               
               
               Cow position:chr10:50050040-50049886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-185
               
               
               Cow position:chr10:16944602-16944447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):140, 35

               
               
               Conread position:19-191
               
               
               Cow position:chr10:13586850-13586673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:19-191
               
               
               Cow position:chr10:47159350-47159184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-197
               
               
               Cow position:chr10:47543217-47543040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):167, 0

               
               
               Conread position:19-217
               
               
               Cow position:chr10:37785215-37785420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):33, 81

               
               
               Conread position:20-149
               
               
               Cow position:chr10:51740633-51740506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:20-176
               
               
               Cow position:chr10:25968306-25968152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:20-181
               
               
               Cow position:chr10:64182584-64182427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:20-183
               
               
               Cow position:chr10:19539680-19539845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:20-184
               
               
               Cow position:chr10:33084299-33084460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):48, 137

               
               
               Conread position:21-171
               
               
               Cow position:chr10:63932334-63932482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:21-172
               
               
               Cow position:chr10:282343-282195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:22-181
               
               
               Cow position:chr10:65461171-65461014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:26-144
               
               
               Cow position:chr10:35650512-35650396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:95
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):34, 71

               
               
               Conread position:26-191
               
               
               Cow position:chr10:12651967-12651801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):37, 59

               
               
               Conread position:27-182
               
               
               Cow position:chr10:55600022-55600178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):27, 70

               
               
               Conread position:29-177
               
               
               Cow position:chr10:7291679-7291824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:30-191
               
               
               Cow position:chr10:63628314-63628158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:31-183
               
               
               Cow position:chr10:23379263-23379111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:31-184
               
               
               Cow position:chr10:50533744-50533888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:35-160
               
               
               Cow position:chr10:46171916-46172040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:35-173
               
               
               Cow position:chr10:45370363-45370498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:35-182
               
               
               Cow position:chr10:23886334-23886481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):33, 14

               
               
               Conread position:35-183
               
               
               Cow position:chr10:25466192-25466044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:36-187
               
               
               Cow position:chr10:37400540-37400395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:41-176
               
               
               Cow position:chr10:57457748-57457615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:41-183
               
               
               Cow position:chr10:33371505-33371362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:41-184
               
               
               Cow position:chr10:30455711-30455857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:41-184
               
               
               Cow position:chr10:59839173-59839310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:42-184
               
               
               Cow position:chr10:36002316-36002176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:42-187
               
               
               Cow position:chr10:56475590-56475439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:43-179
               
               
               Cow position:chr10:39140436-39140301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:43-184
               
               
               Cow position:chr10:59151745-59151888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:44-183
               
               
               Cow position:chr10:24753259-24753124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:45-184
               
               
               Cow position:chr10:40744228-40744092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:47-179
               
               
               Cow position:chr10:62277215-62277348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:48-166
               
               
               Cow position:chr10:48742414-48742533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:97
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:48-167
               
               
               Cow position:chr10:37442656-37442536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:48-168
               
               
               Cow position:chr10:32986059-32986174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:48-172
               
               
               Cow position:chr10:20505878-20505758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:97
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:48-178
               
               
               Cow position:chr10:22810945-22811075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-179
               
               
               Cow position:chr10:13158226-13158094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:48-181
               
               
               Cow position:chr10:37822497-37822630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:99
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-182
               
               
               Cow position:chr10:52120848-52120715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:48-183
               
               
               Cow position:chr10:23923121-23922986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):78, 82

               
               
               Conread position:48-183
               
               
               Cow position:chr10:32573842-32573705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):118, 29

               
               
               Conread position:48-184
               
               
               Cow position:chr10:24375656-24375525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr10:35893794-35893929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr10:59214369-59214510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:48-191
               
               
               Cow position:chr10:15115727-15115583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:48-191
               
               
               Cow position:chr10:22472437-22472294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:107
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-191
               
               
               Cow position:chr10:28429390-28429534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:48-191
               
               
               Cow position:chr10:67581397-67581254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-206
               
               
               Cow position:chr10:13316053-13315894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):20, 147

               
               
               Conread position:49-182
               
               
               Cow position:chr10:24902873-24903006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:49-182
               
               
               Cow position:chr10:56180676-56180542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:49-184
               
               
               Cow position:chr10:26209136-26209271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:49-185
               
               
               Cow position:chr10:7493489-7493625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:49-198
               
               
               Cow position:chr10:31373979-31374125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):83, 47

               
               
               Conread position:50-184
               
               
               Cow position:chr10:20132418-20132552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:51-161
               
               
               Cow position:chr10:43509109-43508999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:88
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:51-167
               
               
               Cow position:chr10:2191002-2191118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:51-181
               
               
               Cow position:chr10:41760212-41760339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:51-182
               
               
               Cow position:chr10:31265945-31266068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:51-182
               
               
               Cow position:chr10:33462280-33462407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:51-183
               
               
               Cow position:chr10:25529081-25529216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:51-191
               
               
               Cow position:chr10:50015889-50016028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:53-191
               
               
               Cow position:chr10:17991047-17990911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:53-192
               
               
               Cow position:chr10:24732410-24732276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:55-183
               
               
               Cow position:chr10:59675147-59675277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:55-184
               
               
               Cow position:chr10:15293371-15293242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:55-184
               
               
               Cow position:chr10:17925968-17926102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:55-184
               
               
               Cow position:chr10:28670713-28670841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:55-184
               
               
               Cow position:chr10:31791153-31791282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):15, 121

               
               
               Conread position:55-184
               
               
               Cow position:chr10:48898771-48898642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:55-184
               
               
               Cow position:chr10:52167281-52167155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):103, 21

               
               
               Conread position:55-191
               
               
               Cow position:chr10:17765864-17766003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):62, 101

               
               
               Conread position:56-158
               
               
               Cow position:chr10:15426977-15427078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:56-161
               
               
               Cow position:chr10:19071961-19071856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:89
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-183
               
               
               Cow position:chr10:52309162-52309036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):34, 42

               
               
               Conread position:56-184
               
               
               Cow position:chr10:22139675-22139802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr10:53247899-53248024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):22, 38

               
               
               Conread position:56-191
               
               
               Cow position:chr10:51223025-51223160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-212
               
               
               Cow position:chr10:38241878-38242034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):128, 21

               
               
               Conread position:58-178
               
               
               Cow position:chr10:9578856-9578977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:95
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:58-184
               
               
               Cow position:chr10:22120020-22120146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:58-215
               
               
               Cow position:chr10:7089449-7089288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):98, 127

               
               
               Conread position:59-184
               
               
               Cow position:chr10:34430124-34430249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:61-184
               
               
               Cow position:chr10:2849448-2849326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:99
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:64-183
               
               
               Cow position:chr10:59843812-59843937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:100
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:64-184
               
               
               Cow position:chr10:34660146-34660266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-185
               
               
               Cow position:chr10:15871776-15871900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:64-191
               
               
               Cow position:chr10:4164366-4164239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:97
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-191
               
               
               Cow position:chr10:24132727-24132850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:65-184
               
               
               Cow position:chr10:4311268-4311149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:65-187
               
               
               Cow position:chr10:19549393-19549514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:65-191
               
               
               Cow position:chr10:15425145-15425023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:65-201
               
               
               Cow position:chr10:35752865-35753001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):7, 73

               
               
               Conread position:66-182
               
               
               Cow position:chr10:8847254-8847137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:92
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:67-154
               
               
               Cow position:chr10:58736872-58736959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:88
               
               
               Alignm identity:78
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:68-183
               
               
               Cow position:chr10:30440954-30441069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:92
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:69-183
               
               
               Cow position:chr10:22480377-22480263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:69-183
               
               
               Cow position:chr10:68829192-68829307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:91
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:70-182
               
               
               Cow position:chr10:890053-889941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:71-179
               
               
               Cow position:chr10:38322200-38322309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:91
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:72-184
               
               
               Cow position:chr10:29349702-29349588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:94
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:76-191
               
               
               Cow position:chr10:17293347-17293462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:90
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:79-183
               
               
               Cow position:chr10:34700712-34700608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:79-184
               
               
               Cow position:chr10:10026431-10026326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:85
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:79-184
               
               
               Cow position:chr10:38223477-38223582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:86
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:91-184
               
               
               Cow position:chr10:48500457-48500365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:94
               
               
               Alignm identity:81
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:1-155
               
               
               Cow position:chr11:83043204-83043351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:1-174
               
               
               Cow position:chr11:36917602-36917784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):57, 7

               
               
               Conread position:1-182
               
               
               Cow position:chr11:19578108-19577926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):19, 155

               
               
               Conread position:2-131
               
               
               Cow position:chr11:30597203-30597063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:2-142
               
               
               Cow position:chr11:62102282-62102423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:2-182
               
               
               Cow position:chr11:56500002-56499822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):8, 22

               
               
               Conread position:2-184
               
               
               Cow position:chr11:32693321-32693496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):9, 63

               
               
               Conread position:2-185
               
               
               Cow position:chr11:48776150-48776335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:3-115
               
               
               Cow position:chr11:80503999-80504111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):64, 52

               
               
               Conread position:3-121
               
               
               Cow position:chr11:70634856-70634732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:3-127
               
               
               Cow position:chr11:68592181-68592057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-135
               
               
               Cow position:chr11:18574692-18574824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-148
               
               
               Cow position:chr11:76896211-76896356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-153
               
               
               Cow position:chr11:32800789-32800639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-160
               
               
               Cow position:chr11:35922034-35922192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):134, 127

               
               
               Conread position:3-161
               
               
               Cow position:chr11:70600665-70600823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-169
               
               
               Cow position:chr11:66041434-66041276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:3-170
               
               
               Cow position:chr11:4363751-4363915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:3-172
               
               
               Cow position:chr11:21173275-21173443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:3-175
               
               
               Cow position:chr11:32881307-32881135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-175
               
               
               Cow position:chr11:48672876-48672704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-176
               
               
               Cow position:chr11:1485072-1485236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):89, 49

               
               
               Conread position:3-178
               
               
               Cow position:chr11:6094242-6094414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:3-178
               
               
               Cow position:chr11:47412004-47411830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):157, 0

               
               
               Conread position:3-179
               
               
               Cow position:chr11:8496195-8496020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:3-180
               
               
               Cow position:chr11:35182825-35183002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-181
               
               
               Cow position:chr11:60486254-60486433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):53, 20

               
               
               Conread position:3-182
               
               
               Cow position:chr11:34616423-34616243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:3-182
               
               
               Cow position:chr11:35140072-35139892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):165, 0

               
               
               Conread position:3-182
               
               
               Cow position:chr11:67614764-67614937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr11:3780253-3780434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):63, 24

               
               
               Conread position:3-183
               
               
               Cow position:chr11:6245483-6245302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):61, 157

               
               
               Conread position:3-183
               
               
               Cow position:chr11:16315036-16314856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr11:21508173-21507986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr11:25968691-25968867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr11:32710678-32710498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr11:36940432-36940612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr11:37514719-37514539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):33, 42

               
               
               Conread position:3-183
               
               
               Cow position:chr11:37804390-37804570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr11:46884537-46884357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr11:51846459-51846281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr11:55744631-55744451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr11:62811458-62811281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr11:63975293-63975113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr11:70458206-70458025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):74, 91

               
               
               Conread position:3-184
               
               
               Cow position:chr11:20194262-20194443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-184
               
               
               Cow position:chr11:22319409-22319224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:3-184
               
               
               Cow position:chr11:29308744-29308563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-184
               
               
               Cow position:chr11:35791658-35791839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):73, 100

               
               
               Conread position:3-184
               
               
               Cow position:chr11:45872148-45872328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:3-184
               
               
               Cow position:chr11:54428782-54428602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):157, 0

               
               
               Conread position:3-184
               
               
               Cow position:chr11:60516371-60516550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:3-184
               
               
               Cow position:chr11:71111060-71110874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):59, 17

               
               
               Conread position:3-185
               
               
               Cow position:chr11:5075068-5075246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:3-187
               
               
               Cow position:chr11:3920141-3920324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:3-188
               
               
               Cow position:chr11:6296916-6297100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):181, 0

               
               
               Conread position:3-188
               
               
               Cow position:chr11:55972768-55972952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):180, 0

               
               
               Conread position:3-191
               
               
               Cow position:chr11:4436494-4436295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):111, 13

               
               
               Conread position:3-191
               
               
               Cow position:chr11:22874632-22874444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-191
               
               
               Cow position:chr11:27913449-27913260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):7, 58

               
               
               Conread position:3-191
               
               
               Cow position:chr11:41438023-41438211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-205
               
               
               Cow position:chr11:3720417-3720217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):149, 0

               
               
               Conread position:4-181
               
               
               Cow position:chr11:17807800-17807978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):166, 0

               
               
               Conread position:5-161
               
               
               Cow position:chr11:74152589-74152749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:5-172
               
               
               Cow position:chr11:259016-259177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:5-181
               
               
               Cow position:chr11:26632852-26633028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:5-182
               
               
               Cow position:chr11:15366818-15366988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:5-182
               
               
               Cow position:chr11:68326702-68326879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:5-183
               
               
               Cow position:chr11:8683917-8684096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:6-185
               
               
               Cow position:chr11:48660089-48659916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:7-183
               
               
               Cow position:chr11:55334077-55333893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:7-195
               
               
               Cow position:chr11:17083156-17083338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):12, 49

               
               
               Conread position:8-128
               
               
               Cow position:chr11:38657025-38657145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-131
               
               
               Cow position:chr11:1265385-1265508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:94
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-131
               
               
               Cow position:chr11:17369683-17369566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-131
               
               
               Cow position:chr11:24551548-24551426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):80, 110

               
               
               Conread position:8-131
               
               
               Cow position:chr11:33271586-33271466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:8-133
               
               
               Cow position:chr11:11994555-11994679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):73, 47

               
               
               Conread position:8-137
               
               
               Cow position:chr11:38879443-38879304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):42, 114

               
               
               Conread position:8-138
               
               
               Cow position:chr11:51683373-51683244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:8-144
               
               
               Cow position:chr11:44176750-44176618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:8-144
               
               
               Cow position:chr11:64101931-64101794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:8-145
               
               
               Cow position:chr11:46314170-46314032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:8-146
               
               
               Cow position:chr11:63695682-63695825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:8-147
               
               
               Cow position:chr11:38974-38831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:8-147
               
               
               Cow position:chr11:69421548-69421693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):47, 122

               
               
               Conread position:8-148
               
               
               Cow position:chr11:30986793-30986657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr11:62081815-62081949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr11:81175755-81175615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):113, 63

               
               
               Conread position:8-149
               
               
               Cow position:chr11:33369309-33369168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-149
               
               
               Cow position:chr11:54872604-54872742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):98, 47

               
               
               Conread position:8-149
               
               
               Cow position:chr11:63475514-63475655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-149
               
               
               Cow position:chr11:67183805-67183665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):40, 57

               
               
               Conread position:8-153
               
               
               Cow position:chr11:35732926-35733070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-154
               
               
               Cow position:chr11:26057490-26057638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:8-154
               
               
               Cow position:chr11:63407851-63407708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:8-156
               
               
               Cow position:chr11:38223636-38223777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-156
               
               
               Cow position:chr11:68570224-68570370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:8-161
               
               
               Cow position:chr11:13940344-13940191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):71, 30

               
               
               Conread position:8-161
               
               
               Cow position:chr11:26343259-26343107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:8-161
               
               
               Cow position:chr11:83066649-83066493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:8-162
               
               
               Cow position:chr11:4621278-4621426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-164
               
               
               Cow position:chr11:40538706-40538553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):123, 47

               
               
               Conread position:8-167
               
               
               Cow position:chr11:23220517-23220362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:8-167
               
               
               Cow position:chr11:33374123-33373965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:8-167
               
               
               Cow position:chr11:80370271-80370114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:8-167
               
               
               Cow position:chr11:81065893-81066050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-168
               
               
               Cow position:chr11:76248206-76248048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:8-170
               
               
               Cow position:chr11:53817012-53816851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):70, 150

               
               
               Conread position:8-170
               
               
               Cow position:chr11:64022953-64023103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-171
               
               
               Cow position:chr11:2836017-2835854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-171
               
               
               Cow position:chr11:6580991-6580828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-171
               
               
               Cow position:chr11:17721644-17721806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:8-171
               
               
               Cow position:chr11:18924904-18924741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-171
               
               
               Cow position:chr11:49210660-49210826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):62, 83

               
               
               Conread position:8-171
               
               
               Cow position:chr11:60720297-60720460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-171
               
               
               Cow position:chr11:63498974-63499131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-171
               
               
               Cow position:chr11:63998933-63999096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-171
               
               
               Cow position:chr11:75285599-75285764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:8-172
               
               
               Cow position:chr11:58102601-58102766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):42, 19

               
               
               Conread position:8-173
               
               
               Cow position:chr11:6319974-6320137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):149, 0

               
               
               Conread position:8-174
               
               
               Cow position:chr11:80586423-80586267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-175
               
               
               Cow position:chr11:5176224-5176388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):149, 47

               
               
               Conread position:8-177
               
               
               Cow position:chr11:47110413-47110242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):57, 148

               
               
               Conread position:8-177
               
               
               Cow position:chr11:48429275-48429100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):96, 47

               
               
               Conread position:8-179
               
               
               Cow position:chr11:1980108-1980280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr11:12080000-12079824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr11:35724127-35723956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr11:36521037-36520862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):119, 69

               
               
               Conread position:8-179
               
               
               Cow position:chr11:42067021-42066847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):138, 55

               
               
               Conread position:8-179
               
               
               Cow position:chr11:60296895-60296718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):43, 144

               
               
               Conread position:8-179
               
               
               Cow position:chr11:68660456-68660623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr11:70756631-70756468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):69, 39

               
               
               Conread position:8-180
               
               
               Cow position:chr11:30165668-30165496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-180
               
               
               Cow position:chr11:46747702-46747874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr11:27343429-27343256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr11:31875251-31875078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr11:32254059-32254231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr11:42016481-42016653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr11:68913300-68913126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr11:77017387-77017227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr11:1932331-1932507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):41, 62

               
               
               Conread position:8-182
               
               
               Cow position:chr11:2788552-2788378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr11:11125825-11125648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):47, 79

               
               
               Conread position:8-182
               
               
               Cow position:chr11:13863945-13864120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr11:17227494-17227657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr11:18699027-18698864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr11:19591836-19592010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr11:23407617-23407449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr11:25791536-25791709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):169, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr11:27502543-27502717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr11:28993591-28993753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr11:29786336-29786514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:147
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr11:34646752-34646574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr11:37100015-37100184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr11:39060448-39060617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr11:39854865-39855029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr11:44017141-44016959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr11:46922730-46922901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):85, 55

               
               
               Conread position:8-182
               
               
               Cow position:chr11:48296182-48296018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr11:48474866-48474688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):44, 29

               
               
               Conread position:8-182
               
               
               Cow position:chr11:51729431-51729271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr11:62789284-62789115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr11:67615092-67615261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr11:71492705-71492875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr11:3740121-3739937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr11:7874297-7874122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr11:8670174-8669994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr11:10095500-10095327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr11:10563162-10562992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):106, 47

               
               
               Conread position:8-183
               
               
               Cow position:chr11:13592896-13592719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr11:17859996-17860172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):59, 97

               
               
               Conread position:8-183
               
               
               Cow position:chr11:22676269-22676099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr11:27907927-27907764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr11:29677364-29677186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):161, 63

               
               
               Conread position:8-183
               
               
               Cow position:chr11:34644815-34644639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):58, 160

               
               
               Conread position:8-183
               
               
               Cow position:chr11:35351876-35352055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):56, 168

               
               
               Conread position:8-183
               
               
               Cow position:chr11:35562878-35562703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr11:35924013-35923838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr11:37918891-37919062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):10, 100

               
               
               Conread position:8-183
               
               
               Cow position:chr11:40395593-40395423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr11:40794194-40794368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr11:41213209-41213026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr11:41215890-41215716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr11:45350353-45350528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):86, 76

               
               
               Conread position:8-183
               
               
               Cow position:chr11:50472475-50472301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):169, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr11:53773840-53773665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):75, 92

               
               
               Conread position:8-183
               
               
               Cow position:chr11:54741928-54742097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr11:56288702-56288529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):158, 69

               
               
               Conread position:8-183
               
               
               Cow position:chr11:57608309-57608472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr11:59024196-59024376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):45, 127

               
               
               Conread position:8-183
               
               
               Cow position:chr11:64029110-64029279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr11:68883877-68883702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr11:70483694-70483868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):65, 43

               
               
               Conread position:8-183
               
               
               Cow position:chr11:73940405-73940578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):84, 75

               
               
               Conread position:8-183
               
               
               Cow position:chr11:77208244-77208060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):46, 121

               
               
               Conread position:8-183
               
               
               Cow position:chr11:77745092-77745268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr11:81041811-81041986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):71, 101

               
               
               Conread position:8-183
               
               
               Cow position:chr11:83398064-83397889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr11:6633883-6633693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr11:7385591-7385422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr11:12555147-12555323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr11:13042991-13043163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:149
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr11:15369546-15369370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr11:18508872-18509048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:143
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr11:19578865-19579032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr11:23251442-23251608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):120, 12

               
               
               Conread position:8-184
               
               
               Cow position:chr11:32260688-32260517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):29, 105

               
               
               Conread position:8-184
               
               
               Cow position:chr11:35149559-35149381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):51, 99

               
               
               Conread position:8-184
               
               
               Cow position:chr11:35363654-35363464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr11:36092762-36092934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):129, 29

               
               
               Conread position:8-184
               
               
               Cow position:chr11:39462776-39462606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr11:41313505-41313674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr11:47837479-47837303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):41, 168

               
               
               Conread position:8-184
               
               
               Cow position:chr11:52690368-52690537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr11:53778777-53778599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:145
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr11:62742491-62742660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr11:64409123-64408959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr11:65826594-65826768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr11:70206472-70206303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr11:72375509-72375700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr11:78820306-78820134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr11:82289745-82289565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):62, 156

               
               
               Conread position:8-185
               
               
               Cow position:chr11:55762014-55761850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-185
               
               
               Cow position:chr11:62620533-62620358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:8-185
               
               
               Cow position:chr11:71345159-71345342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:8-187
               
               
               Cow position:chr11:46999143-46998960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):42, 154

               
               
               Conread position:8-187
               
               
               Cow position:chr11:69417560-69417383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):147, 0

               
               
               Conread position:8-189
               
               
               Cow position:chr11:74427836-74427655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr11:5467238-5467053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):163, 46

               
               
               Conread position:8-191
               
               
               Cow position:chr11:8544859-8545039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):152, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr11:15382338-15382527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr11:30172456-30172285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr11:32782717-32782908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr11:34144762-34144938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):55, 128

               
               
               Conread position:8-191
               
               
               Cow position:chr11:41985891-41986070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr11:73353910-73354084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:8-192
               
               
               Cow position:chr11:79466379-79466186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-194
               
               
               Cow position:chr11:41278344-41278159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):169, 0

               
               
               Conread position:8-201
               
               
               Cow position:chr11:58927730-58927550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):145, 47

               
               
               Conread position:8-202
               
               
               Cow position:chr11:49207868-49207675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):181, 135

               
               
               Conread position:8-202
               
               
               Cow position:chr11:67312945-67312746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):47, 191

               
               
               Conread position:8-204
               
               
               Cow position:chr11:37565026-37564836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):158, 47

               
               
               Conread position:8-214
               
               
               Cow position:chr11:46427247-46427455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:8-215
               
               
               Cow position:chr11:49396369-49396573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):194, 47

               
               
               Conread position:9-123
               
               
               Cow position:chr11:899592-899477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:93
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:9-146
               
               
               Cow position:chr11:63849794-63849931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:9-149
               
               
               Cow position:chr11:49486945-49486796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:9-156
               
               
               Cow position:chr11:19147986-19148126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:9-168
               
               
               Cow position:chr11:84228567-84228717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:9-181
               
               
               Cow position:chr11:79707859-79707699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:9-183
               
               
               Cow position:chr11:42084517-42084692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:9-184
               
               
               Cow position:chr11:32398797-32398621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):52, 99

               
               
               Conread position:10-131
               
               
               Cow position:chr11:28078644-28078529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:10-153
               
               
               Cow position:chr11:59471261-59471115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:10-179
               
               
               Cow position:chr11:66104238-66104407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):104, 45

               
               
               Conread position:10-182
               
               
               Cow position:chr11:38211797-38211630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):30, 46

               
               
               Conread position:10-182
               
               
               Cow position:chr11:66572337-66572512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):44, 149

               
               
               Conread position:10-183
               
               
               Cow position:chr11:34968458-34968630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:10-183
               
               
               Cow position:chr11:47310829-47311000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):162, 0

               
               
               Conread position:10-184
               
               
               Cow position:chr11:4199429-4199254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):45, 137

               
               
               Conread position:10-191
               
               
               Cow position:chr11:6202611-6202418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:11-129
               
               
               Cow position:chr11:2830810-2830694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:94
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:11-138
               
               
               Cow position:chr11:44016399-44016272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:97
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-148
               
               
               Cow position:chr11:27248642-27248509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:11-148
               
               
               Cow position:chr11:43360633-43360766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):134, 44

               
               
               Conread position:11-148
               
               
               Cow position:chr11:82733000-82733131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:11-154
               
               
               Cow position:chr11:37042128-37041984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:11-155
               
               
               Cow position:chr11:26442349-26442493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-155
               
               
               Cow position:chr11:36104469-36104324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:11-156
               
               
               Cow position:chr11:30370256-30370115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:11-163
               
               
               Cow position:chr11:35924216-35924064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):110, 24

               
               
               Conread position:11-168
               
               
               Cow position:chr11:52297069-52297222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:11-169
               
               
               Cow position:chr11:65495190-65495342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:11-171
               
               
               Cow position:chr11:49149200-49149044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):128, 44

               
               
               Conread position:11-173
               
               
               Cow position:chr11:17493637-17493472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):122, 27

               
               
               Conread position:11-174
               
               
               Cow position:chr11:85723848-85723690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:11-178
               
               
               Cow position:chr11:21843985-21844144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-178
               
               
               Cow position:chr11:27760672-27760506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:11-178
               
               
               Cow position:chr11:63849104-63849271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-178
               
               
               Cow position:chr11:71854130-71854290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:11-179
               
               
               Cow position:chr11:3714976-3714811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):146, 0

               
               
               Conread position:11-179
               
               
               Cow position:chr11:25604107-25603935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:11-181
               
               
               Cow position:chr11:41983003-41983181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:11-181
               
               
               Cow position:chr11:52464559-52464398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr11:17889573-17889746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr11:30894849-30895019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr11:34467716-34467555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr11:47314269-47314447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):47, 102

               
               
               Conread position:11-183
               
               
               Cow position:chr11:1380831-1380659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr11:21830057-21830226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr11:35665409-35665579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr11:40792539-40792721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr11:45619504-45619336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr11:57503634-57503466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):57, 39

               
               
               Conread position:11-183
               
               
               Cow position:chr11:62230342-62230164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr11:63202093-63202266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr11:69168742-69168569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):147, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr11:78380915-78381077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr11:81300467-81300637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr11:87155675-87155504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):149, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr11:3896544-3896716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):69, 149

               
               
               Conread position:11-184
               
               
               Cow position:chr11:18791909-18792085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr11:62889738-62889911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr11:63435676-63435504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:143
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr11:66099703-66099880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr11:70422440-70422611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr11:70978585-70978751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr11:77319566-77319397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:11-185
               
               
               Cow position:chr11:64781242-64781068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-191
               
               
               Cow position:chr11:43914447-43914267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-192
               
               
               Cow position:chr11:39250120-39249947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-193
               
               
               Cow position:chr11:25620236-25620424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):135, 45

               
               
               Conread position:11-203
               
               
               Cow position:chr11:5219011-5219194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-203
               
               
               Cow position:chr11:47784934-47784739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):53, 187

               
               
               Conread position:11-205
               
               
               Cow position:chr11:15062604-15062407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):97, 75

               
               
               Conread position:12-131
               
               
               Cow position:chr11:86925810-86925925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:12-145
               
               
               Cow position:chr11:43641541-43641408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-146
               
               
               Cow position:chr11:80923170-80923303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):68, 52

               
               
               Conread position:12-154
               
               
               Cow position:chr11:55117599-55117457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-155
               
               
               Cow position:chr11:7651912-7652055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-157
               
               
               Cow position:chr11:74839759-74839620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-158
               
               
               Cow position:chr11:62606571-62606425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-163
               
               
               Cow position:chr11:72401582-72401729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:12-164
               
               
               Cow position:chr11:42067224-42067056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:12-164
               
               
               Cow position:chr11:42206572-42206424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-164
               
               
               Cow position:chr11:44620109-44619957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-166
               
               
               Cow position:chr11:80296703-80296852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):79, 49

               
               
               Conread position:12-171
               
               
               Cow position:chr11:57767342-57767186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-171
               
               
               Cow position:chr11:63485085-63484931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):150, 40

               
               
               Conread position:12-171
               
               
               Cow position:chr11:81406014-81406173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):119, 65

               
               
               Conread position:12-173
               
               
               Cow position:chr11:36300428-36300584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:12-177
               
               
               Cow position:chr11:41980048-41980215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:12-178
               
               
               Cow position:chr11:5201492-5201663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):52, 76

               
               
               Conread position:12-181
               
               
               Cow position:chr11:73983837-73984018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:12-181
               
               
               Cow position:chr11:86895525-86895362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr11:4637022-4637187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr11:31228110-31227947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr11:62812799-62812965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr11:87171923-87172092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr11:1067285-1067456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr11:38334674-38334507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr11:66939438-66939609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr11:75479869-75480036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr11:76890200-76890029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr11:2084298-2084126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr11:17517555-17517381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr11:34136394-34136226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr11:35109384-35109555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):125, 92

               
               
               Conread position:12-184
               
               
               Cow position:chr11:84385484-84385654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:141
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):145, 0

               
               
               Conread position:12-191
               
               
               Cow position:chr11:21885986-21885809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:12-191
               
               
               Cow position:chr11:33409110-33409286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:12-201
               
               
               Cow position:chr11:17676222-17676406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:13-157
               
               
               Cow position:chr11:4411721-4411859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:13-177
               
               
               Cow position:chr11:17074076-17074229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:13-182
               
               
               Cow position:chr11:30830466-30830629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:13-182
               
               
               Cow position:chr11:31410728-31410893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:13-182
               
               
               Cow position:chr11:82730832-82731013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:13-183
               
               
               Cow position:chr11:26143942-26144112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:141
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:13-184
               
               
               Cow position:chr11:67912010-67912168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:14-168
               
               
               Cow position:chr11:30192331-30192177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):58, 6

               
               
               Conread position:14-168
               
               
               Cow position:chr11:30322343-30322494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:14-171
               
               
               Cow position:chr11:5264249-5264092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-177
               
               
               Cow position:chr11:9836304-9836465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:14-177
               
               
               Cow position:chr11:68206695-68206855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):131, 41

               
               
               Conread position:14-178
               
               
               Cow position:chr11:30209670-30209831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:14-181
               
               
               Cow position:chr11:26535935-26535775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):90, 41

               
               
               Conread position:14-183
               
               
               Cow position:chr11:29659711-29659543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):65, 31

               
               
               Conread position:14-183
               
               
               Cow position:chr11:30638801-30638966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:14-183
               
               
               Cow position:chr11:30808441-30808610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-183
               
               
               Cow position:chr11:75090066-75090235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-183
               
               
               Cow position:chr11:81138363-81138195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:14-184
               
               
               Cow position:chr11:33348043-33348204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:14-184
               
               
               Cow position:chr11:48650137-48649955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:14-184
               
               
               Cow position:chr11:66188168-66188334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:14-185
               
               
               Cow position:chr11:15772562-15772730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:14-190
               
               
               Cow position:chr11:80412858-80413036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):56, 149

               
               
               Conread position:14-191
               
               
               Cow position:chr11:30708656-30708482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):77, 101

               
               
               Conread position:14-191
               
               
               Cow position:chr11:49153091-49152925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:15-148
               
               
               Cow position:chr11:44859136-44859268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):5, 41

               
               
               Conread position:15-170
               
               
               Cow position:chr11:79666111-79666265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:15-182
               
               
               Cow position:chr11:40459260-40459092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:15-183
               
               
               Cow position:chr11:19487329-19487497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:16-171
               
               
               Cow position:chr11:5486162-5486009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):57, 28

               
               
               Conread position:16-184
               
               
               Cow position:chr11:82940477-82940636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):60, 40

               
               
               Conread position:17-184
               
               
               Cow position:chr11:6233730-6233897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:18-177
               
               
               Cow position:chr11:19549626-19549474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:18-179
               
               
               Cow position:chr11:13500161-13500003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:18-180
               
               
               Cow position:chr11:41549186-41549346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):117, 49

               
               
               Conread position:18-180
               
               
               Cow position:chr11:77758614-77758774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:18-181
               
               
               Cow position:chr11:37435840-37436002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:18-181
               
               
               Cow position:chr11:77241849-77241692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:18-182
               
               
               Cow position:chr11:79548790-79548952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):50, 37

               
               
               Conread position:18-183
               
               
               Cow position:chr11:7560148-7559983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:18-183
               
               
               Cow position:chr11:53463089-53462926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):86, 51

               
               
               Conread position:18-183
               
               
               Cow position:chr11:56311453-56311612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:18-183
               
               
               Cow position:chr11:71868456-71868619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:18-183
               
               
               Cow position:chr11:85571657-85571822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:18-184
               
               
               Cow position:chr11:8988089-8988247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:18-184
               
               
               Cow position:chr11:35926761-35926922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:18-184
               
               
               Cow position:chr11:53510354-53510517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:18-184
               
               
               Cow position:chr11:63065800-63065638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):83, 51

               
               
               Conread position:19-149
               
               
               Cow position:chr11:8520968-8520841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-149
               
               
               Cow position:chr11:27688245-27688373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:19-149
               
               
               Cow position:chr11:37490431-37490559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-150
               
               
               Cow position:chr11:6413553-6413682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:19-161
               
               
               Cow position:chr11:37173191-37173046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):44, 62

               
               
               Conread position:19-169
               
               
               Cow position:chr11:31994222-31994075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-178
               
               
               Cow position:chr11:4662908-4663058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:19-180
               
               
               Cow position:chr11:72871047-72870891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):72, 36

               
               
               Conread position:19-183
               
               
               Cow position:chr11:9237698-9237863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:19-183
               
               
               Cow position:chr11:36920428-36920594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):97, 52

               
               
               Conread position:19-183
               
               
               Cow position:chr11:45742521-45742361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:19-184
               
               
               Cow position:chr11:9270588-9270742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:19-184
               
               
               Cow position:chr11:19946573-19946418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:19-184
               
               
               Cow position:chr11:29482286-29482453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:19-184
               
               
               Cow position:chr11:35669811-35669969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-184
               
               
               Cow position:chr11:63909509-63909681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):36, 141

               
               
               Conread position:19-184
               
               
               Cow position:chr11:67804891-67804732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):33, 94

               
               
               Conread position:19-191
               
               
               Cow position:chr11:35536730-35536563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:19-191
               
               
               Cow position:chr11:36112564-36112399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-201
               
               
               Cow position:chr11:372559-372738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):51, 88

               
               
               Conread position:20-148
               
               
               Cow position:chr11:73977154-73977282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):18, 45

               
               
               Conread position:20-153
               
               
               Cow position:chr11:68909708-68909841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:101
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:20-173
               
               
               Cow position:chr11:83926185-83926039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:20-183
               
               
               Cow position:chr11:19247059-19247215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:20-183
               
               
               Cow position:chr11:25783859-25783696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:20-184
               
               
               Cow position:chr11:84977220-84977376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):90, 30

               
               
               Conread position:20-189
               
               
               Cow position:chr11:18119648-18119479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):117, 99

               
               
               Conread position:20-202
               
               
               Cow position:chr11:63382052-63382226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:21-179
               
               
               Cow position:chr11:62778588-62778430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):13, 140

               
               
               Conread position:21-184
               
               
               Cow position:chr11:4207460-4207294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):41, 63

               
               
               Conread position:25-154
               
               
               Cow position:chr11:15526255-15526122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):66, 106

               
               
               Conread position:25-184
               
               
               Cow position:chr11:34113402-34113247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):133, 28

               
               
               Conread position:26-164
               
               
               Cow position:chr11:61178491-61178360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:26-172
               
               
               Cow position:chr11:81614372-81614519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:26-184
               
               
               Cow position:chr11:84498804-84498967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):27, 107

               
               
               Conread position:27-145
               
               
               Cow position:chr11:46010114-46010232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:97
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:27-161
               
               
               Cow position:chr11:38202109-38201975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:27-191
               
               
               Cow position:chr11:32436476-32436310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):28, 96

               
               
               Conread position:28-183
               
               
               Cow position:chr11:33414375-33414220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:28-184
               
               
               Cow position:chr11:22977740-22977891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:28-184
               
               
               Cow position:chr11:34963208-34963053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:29-143
               
               
               Cow position:chr11:34279881-34279766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:91
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:29-182
               
               
               Cow position:chr11:35213033-35213183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:29-183
               
               
               Cow position:chr11:2344388-2344234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):117, 34

               
               
               Conread position:30-173
               
               
               Cow position:chr11:79869465-79869319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:30-183
               
               
               Cow position:chr11:45849361-45849516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:31-183
               
               
               Cow position:chr11:38236387-38236235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:31-184
               
               
               Cow position:chr11:7924458-7924606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:32-184
               
               
               Cow position:chr11:17278546-17278689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:33-161
               
               
               Cow position:chr11:31439967-31440096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:98
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:34-179
               
               
               Cow position:chr11:31901313-31901173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):131, 21

               
               
               Conread position:35-164
               
               
               Cow position:chr11:84757964-84757837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:99
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:35-179
               
               
               Cow position:chr11:70639972-70639833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:35-186
               
               
               Cow position:chr11:79728535-79728687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):35, 18

               
               
               Conread position:37-184
               
               
               Cow position:chr11:18608109-18608255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):39, 18

               
               
               Conread position:38-182
               
               
               Cow position:chr11:76835496-76835640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:38-183
               
               
               Cow position:chr11:71934829-71934971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:41-184
               
               
               Cow position:chr11:5789774-5789917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:41-184
               
               
               Cow position:chr11:18587469-18587613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:41-184
               
               
               Cow position:chr11:53717682-53717824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:42-184
               
               
               Cow position:chr11:48512287-48512147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:43-180
               
               
               Cow position:chr11:37335966-37336102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:43-182
               
               
               Cow position:chr11:44636631-44636769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:105
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:44-183
               
               
               Cow position:chr11:18543387-18543522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):19, 92

               
               
               Conread position:45-167
               
               
               Cow position:chr11:69139828-69139948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:45-179
               
               
               Cow position:chr11:48232950-48232815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:45-182
               
               
               Cow position:chr11:897795-897658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):29, 10

               
               
               Conread position:45-182
               
               
               Cow position:chr11:44032135-44031996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:45-191
               
               
               Cow position:chr11:54334450-54334304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:46-168
               
               
               Cow position:chr11:46499128-46499007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:100
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):116, 28

               
               
               Conread position:47-184
               
               
               Cow position:chr11:64351671-64351808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:103
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-148
               
               
               Cow position:chr11:75246466-75246367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:85
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:48-169
               
               
               Cow position:chr11:16796344-16796222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:48-169
               
               
               Cow position:chr11:37982459-37982580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-176
               
               
               Cow position:chr11:48272319-48272191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-178
               
               
               Cow position:chr11:83579058-83579187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:48-179
               
               
               Cow position:chr11:70709906-70709771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:48-179
               
               
               Cow position:chr11:70826067-70825936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-181
               
               
               Cow position:chr11:47585944-47586073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:48-182
               
               
               Cow position:chr11:40573215-40573347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):16, 89

               
               
               Conread position:48-182
               
               
               Cow position:chr11:56290630-56290496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-182
               
               
               Cow position:chr11:74720842-74720709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:48-183
               
               
               Cow position:chr11:34032080-34032218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):48, 100

               
               
               Conread position:48-184
               
               
               Cow position:chr11:61958626-61958761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:48-187
               
               
               Cow position:chr11:15373958-15373818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):44, 50

               
               
               Conread position:48-188
               
               
               Cow position:chr11:34623289-34623150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:48-189
               
               
               Cow position:chr11:84775192-84775052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:48-191
               
               
               Cow position:chr11:17831102-17831245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):22, 113

               
               
               Conread position:48-191
               
               
               Cow position:chr11:64867899-64868045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:109
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:49-177
               
               
               Cow position:chr11:32615852-32615725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:49-184
               
               
               Cow position:chr11:33311095-33310956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:49-184
               
               
               Cow position:chr11:58938629-58938762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:49-191
               
               
               Cow position:chr11:60470081-60470216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:49-191
               
               
               Cow position:chr11:62168214-62168355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:49-191
               
               
               Cow position:chr11:70517477-70517619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):136, 98

               
               
               Conread position:50-191
               
               
               Cow position:chr11:62754201-62754343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:51-147
               
               
               Cow position:chr11:80596455-80596357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:83
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:51-168
               
               
               Cow position:chr11:59916263-59916146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):18, 110

               
               
               Conread position:51-182
               
               
               Cow position:chr11:79018943-79019074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:51-184
               
               
               Cow position:chr11:58173742-58173608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):19, 93

               
               
               Conread position:51-191
               
               
               Cow position:chr11:62155752-62155614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:52-159
               
               
               Cow position:chr11:2284758-2284651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:52-161
               
               
               Cow position:chr11:46333588-46333479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:90
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:52-181
               
               
               Cow position:chr11:62808392-62808520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:55-182
               
               
               Cow position:chr11:71767713-71767586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:55-191
               
               
               Cow position:chr11:62609716-62609580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-163
               
               
               Cow position:chr11:56895865-56895971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:90
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-179
               
               
               Cow position:chr11:30805024-30805145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:56-183
               
               
               Cow position:chr11:61137064-61137191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:96
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr11:16906940-16907066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):102, 94

               
               
               Conread position:56-184
               
               
               Cow position:chr11:70278002-70278130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr11:74378986-74378857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:56-191
               
               
               Cow position:chr11:69307624-69307489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-193
               
               
               Cow position:chr11:40478742-40478879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:57-163
               
               
               Cow position:chr11:78780749-78780854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:57-180
               
               
               Cow position:chr11:71501024-71501145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:57-183
               
               
               Cow position:chr11:31885832-31885706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:57-184
               
               
               Cow position:chr11:63482321-63482443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:57-184
               
               
               Cow position:chr11:63919944-63920071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:57-191
               
               
               Cow position:chr11:22747221-22747352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):117, 99

               
               
               Conread position:58-152
               
               
               Cow position:chr11:47102909-47102815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:80
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:58-183
               
               
               Cow position:chr11:81728540-81728665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:97
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:59-176
               
               
               Cow position:chr11:37923378-37923262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:59-183
               
               
               Cow position:chr11:18189629-18189752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:59-184
               
               
               Cow position:chr11:4652865-4652990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:97
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:59-191
               
               
               Cow position:chr11:71807459-71807593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):73, 117

               
               
               Conread position:60-181
               
               
               Cow position:chr11:65842968-65843088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:60-183
               
               
               Cow position:chr11:16719352-16719229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):28, 84

               
               
               Conread position:64-184
               
               
               Cow position:chr11:23232417-23232533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:99
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):93, 59

               
               
               Conread position:64-184
               
               
               Cow position:chr11:83033137-83033253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:64-187
               
               
               Cow position:chr11:33697739-33697621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:64-191
               
               
               Cow position:chr11:41809390-41809517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:96
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-191
               
               
               Cow position:chr11:71341362-71341489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:65-182
               
               
               Cow position:chr11:73512342-73512458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:94
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:65-209
               
               
               Cow position:chr11:15682878-15683021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:66-183
               
               
               Cow position:chr11:3769208-3769325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:66-184
               
               
               Cow position:chr11:1362367-1362485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:97
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:66-184
               
               
               Cow position:chr11:81931016-81931129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:97
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:67-180
               
               
               Cow position:chr11:36799208-36799320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:90
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:67-181
               
               
               Cow position:chr11:63517208-63517097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:68-184
               
               
               Cow position:chr11:17768582-17768469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:68-184
               
               
               Cow position:chr11:20602325-20602210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:69-180
               
               
               Cow position:chr11:68173629-68173518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:89
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:69-182
               
               
               Cow position:chr11:42056204-42056091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:90
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:69-187
               
               
               Cow position:chr11:69415501-69415617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:95
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:69-207
               
               
               Cow position:chr11:46452233-46452096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):124, 87

               
               
               Conread position:70-183
               
               
               Cow position:chr11:29946817-29946930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:71-175
               
               
               Cow position:chr11:16320379-16320276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:87
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:72-205
               
               
               Cow position:chr11:21852207-21852340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:100
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:74-191
               
               
               Cow position:chr11:61130574-61130691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:92
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:75-184
               
               
               Cow position:chr11:36987041-36986932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:88
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:75-191
               
               
               Cow position:chr11:33527144-33527027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:79-191
               
               
               Cow position:chr11:77546503-77546391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:81-184
               
               
               Cow position:chr11:34106584-34106687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:90
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-154
               
               
               Cow position:chr12:37256159-37256005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):67, 7

               
               
               Conread position:1-178
               
               
               Cow position:chr12:25561507-25561338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:1-184
               
               
               Cow position:chr12:23106080-23105899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:3-124
               
               
               Cow position:chr12:9055276-9055397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:94
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-139
               
               
               Cow position:chr12:36241247-36241379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:3-146
               
               
               Cow position:chr12:38032003-38032140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:3-154
               
               
               Cow position:chr12:760679-760533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:3-154
               
               
               Cow position:chr12:11272689-11272834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:3-161
               
               
               Cow position:chr12:38552333-38552179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:3-161
               
               
               Cow position:chr12:43427659-43427817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-173
               
               
               Cow position:chr12:22515598-22515759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:3-179
               
               
               Cow position:chr12:11525451-11525627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-180
               
               
               Cow position:chr12:3472855-3473030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):154, 0

               
               
               Conread position:3-180
               
               
               Cow position:chr12:31925995-31925820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):171, 154

               
               
               Conread position:3-181
               
               
               Cow position:chr12:9465042-9465220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):13, 18

               
               
               Conread position:3-181
               
               
               Cow position:chr12:19400676-19400851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):65, 84

               
               
               Conread position:3-182
               
               
               Cow position:chr12:5459392-5459213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-182
               
               
               Cow position:chr12:42160417-42160595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr12:9710065-9710245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr12:12532351-12532528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr12:12637045-12637220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr12:33298324-33298145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr12:35310542-35310722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):73, 121

               
               
               Conread position:3-183
               
               
               Cow position:chr12:38126381-38126561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-186
               
               
               Cow position:chr12:11860841-11860659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:3-188
               
               
               Cow position:chr12:22323127-22323317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:3-191
               
               
               Cow position:chr12:12198769-12198957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-191
               
               
               Cow position:chr12:17478898-17479087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:3-192
               
               
               Cow position:chr12:35469311-35469493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:3-198
               
               
               Cow position:chr12:43551076-43551272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):73, 191

               
               
               Conread position:3-205
               
               
               Cow position:chr12:30946886-30946684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:4-146
               
               
               Cow position:chr12:6427038-6426896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):25, 133

               
               
               Conread position:4-184
               
               
               Cow position:chr12:33323355-33323534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):87, 62

               
               
               Conread position:5-176
               
               
               Cow position:chr12:44861119-44861290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:5-179
               
               
               Cow position:chr12:24181281-24181116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:5-183
               
               
               Cow position:chr12:21393848-21393669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):76, 40

               
               
               Conread position:5-193
               
               
               Cow position:chr12:4866952-4866770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:7-177
               
               
               Cow position:chr12:31883482-31883307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):47, 134

               
               
               Conread position:7-179
               
               
               Cow position:chr12:37123788-37123616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):151, 72

               
               
               Conread position:7-181
               
               
               Cow position:chr12:44542399-44542231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:7-184
               
               
               Cow position:chr12:29675003-29675180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:7-184
               
               
               Cow position:chr12:37993586-37993770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):44, 20

               
               
               Conread position:7-185
               
               
               Cow position:chr12:15496033-15495859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):156, 32

               
               
               Conread position:7-191
               
               
               Cow position:chr12:42254805-42254623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:147
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:8-113
               
               
               Cow position:chr12:29289922-29289818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:86
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-123
               
               
               Cow position:chr12:25299496-25299382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:94
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:8-126
               
               
               Cow position:chr12:4093634-4093752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-131
               
               
               Cow position:chr12:27663855-27663978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:95
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-131
               
               
               Cow position:chr12:44892344-44892222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:100
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:8-134
               
               
               Cow position:chr12:37718633-37718759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-134
               
               
               Cow position:chr12:37742436-37742310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-141
               
               
               Cow position:chr12:41420724-41420861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-142
               
               
               Cow position:chr12:17744729-17744860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):69, 47

               
               
               Conread position:8-147
               
               
               Cow position:chr12:26576027-26575895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr12:22485948-22485804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:8-154
               
               
               Cow position:chr12:987293-987139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:8-154
               
               
               Cow position:chr12:14396653-14396793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-154
               
               
               Cow position:chr12:38679183-38679041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-156
               
               
               Cow position:chr12:583369-583520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:8-161
               
               
               Cow position:chr12:25814292-25814138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:8-167
               
               
               Cow position:chr12:1089255-1089415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):98, 131

               
               
               Conread position:8-167
               
               
               Cow position:chr12:22048059-22047903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:8-167
               
               
               Cow position:chr12:34877973-34877809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:8-167
               
               
               Cow position:chr12:43352072-43351913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-168
               
               
               Cow position:chr12:7884545-7884703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-170
               
               
               Cow position:chr12:30745851-30745694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:8-171
               
               
               Cow position:chr12:23446851-23446695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:8-171
               
               
               Cow position:chr12:27176773-27176615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:8-171
               
               
               Cow position:chr12:27192231-27192389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:8-171
               
               
               Cow position:chr12:44602644-44602481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-172
               
               
               Cow position:chr12:6480777-6480614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-173
               
               
               Cow position:chr12:41989546-41989712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:8-175
               
               
               Cow position:chr12:6666696-6666545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-175
               
               
               Cow position:chr12:20355358-20355186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-176
               
               
               Cow position:chr12:35137056-35136889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):152, 0

               
               
               Conread position:8-177
               
               
               Cow position:chr12:31602686-31602851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:8-177
               
               
               Cow position:chr12:47267173-47267340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr12:16386320-16386490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr12:23574905-23574730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr12:27430655-27430473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr12:29731446-29731281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr12:31841705-31841536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:8-180
               
               
               Cow position:chr12:17250639-17250481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr12:8759467-8759292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr12:13643370-13643198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):167, 147

               
               
               Conread position:8-181
               
               
               Cow position:chr12:16360001-16359829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr12:17108289-17108126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):154, 42

               
               
               Conread position:8-181
               
               
               Cow position:chr12:31948247-31948080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):126, 37

               
               
               Conread position:8-182
               
               
               Cow position:chr12:5635317-5635489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr12:6241459-6241283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr12:9766743-9766913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr12:24437497-24437671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr12:24663255-24663078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr12:31532271-31532436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr12:33851491-33851325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr12:36261829-36261653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr12:37480702-37480871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr12:41776232-41776062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):112, 53

               
               
               Conread position:8-182
               
               
               Cow position:chr12:42879834-42879658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):61, 83

               
               
               Conread position:8-183
               
               
               Cow position:chr12:6187974-6188151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr12:10827921-10827748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr12:10895415-10895590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr12:10942429-10942250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr12:15389205-15389034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr12:25343919-25343744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr12:25456556-25456371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr12:38154933-38155108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr12:41220878-41221046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr12:42282704-42282876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):129, 46

               
               
               Conread position:8-183
               
               
               Cow position:chr12:43974427-43974256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):148, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr12:3623826-3623656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr12:4769054-4768888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr12:7110343-7110159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr12:8943080-8943262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr12:10833997-10834162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr12:12301062-12300877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr12:15938132-15938301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr12:19697532-19697358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):8, 48

               
               
               Conread position:8-184
               
               
               Cow position:chr12:30590904-30590726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):16, 33

               
               
               Conread position:8-184
               
               
               Cow position:chr12:37008575-37008741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr12:38774110-38774281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):54, 59

               
               
               Conread position:8-184
               
               
               Cow position:chr12:40910150-40910327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):123, 47

               
               
               Conread position:8-184
               
               
               Cow position:chr12:42180993-42181167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:147
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr12:42749578-42749402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):60, 143

               
               
               Conread position:8-184
               
               
               Cow position:chr12:45167870-45168057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):41, 97

               
               
               Conread position:8-184
               
               
               Cow position:chr12:46144188-46144013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):46, 99

               
               
               Conread position:8-185
               
               
               Cow position:chr12:25280368-25280541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:8-185
               
               
               Cow position:chr12:33976338-33976160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:8-187
               
               
               Cow position:chr12:41684639-41684470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-189
               
               
               Cow position:chr12:39149914-39150095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:149
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr12:18103482-18103654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr12:40157893-40158067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:8-192
               
               
               Cow position:chr12:6688019-6687847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-193
               
               
               Cow position:chr12:14986882-14986702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-193
               
               
               Cow position:chr12:30919569-30919378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:8-200
               
               
               Cow position:chr12:26356573-26356764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):175, 0

               
               
               Conread position:8-200
               
               
               Cow position:chr12:32051655-32051454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):37, 84

               
               
               Conread position:8-201
               
               
               Cow position:chr12:6754326-6754142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-201
               
               
               Cow position:chr12:23939354-23939169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:8-206
               
               
               Cow position:chr12:3057224-3057026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):174, 69

               
               
               Conread position:9-175
               
               
               Cow position:chr12:6958353-6958190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):82, 42

               
               
               Conread position:9-177
               
               
               Cow position:chr12:26217693-26217855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:9-182
               
               
               Cow position:chr12:6410602-6410771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):123, 13

               
               
               Conread position:9-191
               
               
               Cow position:chr12:11836364-11836189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:9-191
               
               
               Cow position:chr12:42967129-42966955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:10-154
               
               
               Cow position:chr12:11068547-11068410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:10-161
               
               
               Cow position:chr12:39339843-39339696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:10-171
               
               
               Cow position:chr12:35664090-35663938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:10-209
               
               
               Cow position:chr12:14987933-14987736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):148, 42

               
               
               Conread position:11-135
               
               
               Cow position:chr12:13995662-13995787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:102
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:11-138
               
               
               Cow position:chr12:4109178-4109051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:97
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-168
               
               
               Cow position:chr12:44013457-44013619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):51, 19

               
               
               Conread position:11-171
               
               
               Cow position:chr12:4512319-4512475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:11-175
               
               
               Cow position:chr12:46064998-46064833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):97, 76

               
               
               Conread position:11-176
               
               
               Cow position:chr12:15122457-15122294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):149, 44

               
               
               Conread position:11-177
               
               
               Cow position:chr12:45782355-45782195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-178
               
               
               Cow position:chr12:42944269-42944102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-179
               
               
               Cow position:chr12:19261327-19261162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr12:18087560-18087731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr12:18518804-18518637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr12:18996943-18996774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr12:33949033-33948868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr12:41802062-41801891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr12:43782837-43783011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):70, 23

               
               
               Conread position:11-183
               
               
               Cow position:chr12:4193968-4193791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr12:14223115-14222944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr12:24152474-24152301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):91, 65

               
               
               Conread position:11-183
               
               
               Cow position:chr12:36500815-36500985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):52, 56

               
               
               Conread position:11-183
               
               
               Cow position:chr12:39746539-39746369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr12:4341603-4341782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr12:9482170-9482343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):67, 92

               
               
               Conread position:11-184
               
               
               Cow position:chr12:13911444-13911619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):106, 44

               
               
               Conread position:11-184
               
               
               Cow position:chr12:23916971-23916808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr12:29057522-29057351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr12:35240971-35241143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr12:36790681-36790850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:11-185
               
               
               Cow position:chr12:21780296-21780123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:145
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:11-190
               
               
               Cow position:chr12:29180806-29180629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):151, 51

               
               
               Conread position:11-203
               
               
               Cow position:chr12:26147036-26147226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):54, 40

               
               
               Conread position:12-145
               
               
               Cow position:chr12:15050491-15050622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:12-167
               
               
               Cow position:chr12:43583129-43582981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:12-168
               
               
               Cow position:chr12:30194825-30194679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:12-170
               
               
               Cow position:chr12:42698102-42698269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):31, 146

               
               
               Conread position:12-171
               
               
               Cow position:chr12:17270668-17270509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-173
               
               
               Cow position:chr12:48415389-48415543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:12-177
               
               
               Cow position:chr12:6206465-6206300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):83, 115

               
               
               Conread position:12-178
               
               
               Cow position:chr12:46714508-46714339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):51, 100

               
               
               Conread position:12-179
               
               
               Cow position:chr12:26357236-26357404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:12-180
               
               
               Cow position:chr12:3675383-3675561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):42, 98

               
               
               Conread position:12-180
               
               
               Cow position:chr12:34174285-34174121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:12-181
               
               
               Cow position:chr12:18582865-18583027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-181
               
               
               Cow position:chr12:34333247-34333075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):23, 69

               
               
               Conread position:12-182
               
               
               Cow position:chr12:9143518-9143351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr12:17269932-17269766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr12:45069253-45069423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):14, 43

               
               
               Conread position:12-183
               
               
               Cow position:chr12:4596604-4596431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):39, 150

               
               
               Conread position:12-183
               
               
               Cow position:chr12:4720075-4719910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr12:4954952-4954790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr12:9514499-9514324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr12:21390005-21389834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr12:25809566-25809392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):58, 15

               
               
               Conread position:12-183
               
               
               Cow position:chr12:28210146-28210315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr12:16056724-16056896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr12:23836466-23836293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):43, 139

               
               
               Conread position:12-184
               
               
               Cow position:chr12:24146766-24146593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):125, 74

               
               
               Conread position:12-184
               
               
               Cow position:chr12:27563245-27563415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:12-185
               
               
               Cow position:chr12:11106447-11106619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):166, 157

               
               
               Conread position:12-187
               
               
               Cow position:chr12:43855021-43854853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:147
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:12-193
               
               
               Cow position:chr12:25417444-25417616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:12-201
               
               
               Cow position:chr12:35368775-35368588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:13-146
               
               
               Cow position:chr12:38822802-38822676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:13-177
               
               
               Cow position:chr12:43474888-43474729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:13-179
               
               
               Cow position:chr12:24397032-24397196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:140
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:13-181
               
               
               Cow position:chr12:6121729-6121561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:13-181
               
               
               Cow position:chr12:20356676-20356841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:13-184
               
               
               Cow position:chr12:19258409-19258242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):78, 53

               
               
               Conread position:14-144
               
               
               Cow position:chr12:3454828-3454696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:105
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:14-161
               
               
               Cow position:chr12:12699509-12699655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:14-180
               
               
               Cow position:chr12:9130034-9129875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:14-183
               
               
               Cow position:chr12:13988503-13988332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:14-183
               
               
               Cow position:chr12:35124021-35123853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:14-183
               
               
               Cow position:chr12:43619413-43619245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):92, 156

               
               
               Conread position:14-184
               
               
               Cow position:chr12:11057000-11056837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):113, 41

               
               
               Conread position:14-185
               
               
               Cow position:chr12:11587900-11587735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:14-185
               
               
               Cow position:chr12:31269289-31269115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:18-175
               
               
               Cow position:chr12:29966230-29966076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:18-183
               
               
               Cow position:chr12:25823101-25823264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:18-184
               
               
               Cow position:chr12:3371735-3371891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:18-184
               
               
               Cow position:chr12:30661824-30661988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:19-145
               
               
               Cow position:chr12:42562023-42561902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-149
               
               
               Cow position:chr12:26945712-26945838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-150
               
               
               Cow position:chr12:21819556-21819428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:19-160
               
               
               Cow position:chr12:15509638-15509775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:19-161
               
               
               Cow position:chr12:30042852-30042710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:19-177
               
               
               Cow position:chr12:18938995-18938837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:19-181
               
               
               Cow position:chr12:30476636-30476471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):27, 156

               
               
               Conread position:19-184
               
               
               Cow position:chr12:35770896-35771059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:19-201
               
               
               Cow position:chr12:41159714-41159536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:149
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:19-209
               
               
               Cow position:chr12:22859583-22859406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:20-178
               
               
               Cow position:chr12:7299338-7299492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):71, 35

               
               
               Conread position:20-181
               
               
               Cow position:chr12:22752754-22752592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):44, 153

               
               
               Conread position:20-183
               
               
               Cow position:chr12:40200820-40200664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:20-196
               
               
               Cow position:chr12:11230361-11230185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):143, 162

               
               
               Conread position:20-202
               
               
               Cow position:chr12:44022544-44022365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:21-183
               
               
               Cow position:chr12:26868689-26868850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:21-185
               
               
               Cow position:chr12:26749827-26749991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:21-207
               
               
               Cow position:chr12:46333471-46333289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):49, 75

               
               
               Conread position:25-182
               
               
               Cow position:chr12:46634551-46634707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:26-171
               
               
               Cow position:chr12:20479220-20479363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:26-184
               
               
               Cow position:chr12:7457424-7457581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):10, 134

               
               
               Conread position:27-184
               
               
               Cow position:chr12:45001949-45002105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:29-197
               
               
               Cow position:chr12:5609395-5609564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):76, 137

               
               
               Conread position:30-181
               
               
               Cow position:chr12:25596750-25596603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:31-183
               
               
               Cow position:chr12:32753631-32753476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:34-179
               
               
               Cow position:chr12:25355644-25355789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:36-181
               
               
               Cow position:chr12:24222412-24222556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:37-185
               
               
               Cow position:chr12:9914900-9914750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:41-182
               
               
               Cow position:chr12:15163243-15163104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:41-184
               
               
               Cow position:chr12:22894278-22894132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):7, 55

               
               
               Conread position:42-181
               
               
               Cow position:chr12:25441747-25441607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):26, 68

               
               
               Conread position:45-183
               
               
               Cow position:chr12:8859279-8859139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):93, 116

               
               
               Conread position:47-183
               
               
               Cow position:chr12:11109853-11109717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-175
               
               
               Cow position:chr12:1344842-1344716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:48-179
               
               
               Cow position:chr12:30226836-30226966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:48-182
               
               
               Cow position:chr12:42286073-42285934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr12:3879882-3880018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr12:18523667-18523526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr12:25445011-25444876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr12:45014781-45014641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:48-187
               
               
               Cow position:chr12:7000507-7000644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:49-180
               
               
               Cow position:chr12:45090257-45090384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:50-184
               
               
               Cow position:chr12:7920338-7920204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:50-184
               
               
               Cow position:chr12:29779815-29779952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:51-184
               
               
               Cow position:chr12:5543698-5543831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):13, 102

               
               
               Conread position:51-191
               
               
               Cow position:chr12:17774889-17774749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:51-191
               
               
               Cow position:chr12:27037355-27037495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:52-184
               
               
               Cow position:chr12:3197360-3197231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:53-184
               
               
               Cow position:chr12:3950253-3950383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:55-184
               
               
               Cow position:chr12:4793287-4793159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:55-185
               
               
               Cow position:chr12:15173914-15173784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:55-191
               
               
               Cow position:chr12:23798190-23798056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):84, 96

               
               
               Conread position:56-183
               
               
               Cow position:chr12:41474179-41474052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr12:3586210-3586080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr12:32419284-32419409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):18, 39

               
               
               Conread position:56-184
               
               
               Cow position:chr12:42143249-42143122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:56-189
               
               
               Cow position:chr12:3662756-3662891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:56-201
               
               
               Cow position:chr12:30753811-30753666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):14, 91

               
               
               Conread position:57-183
               
               
               Cow position:chr12:22540296-22540170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:57-184
               
               
               Cow position:chr12:1701716-1701843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:104
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:57-184
               
               
               Cow position:chr12:4797388-4797262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:57-184
               
               
               Cow position:chr12:29200305-29200434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:60-191
               
               
               Cow position:chr12:4135163-4135032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:106
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-184
               
               
               Cow position:chr12:6210075-6210196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:94
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:64-184
               
               
               Cow position:chr12:6226065-6226182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:64-184
               
               
               Cow position:chr12:44517656-44517776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-185
               
               
               Cow position:chr12:23912929-23913047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:64-186
               
               
               Cow position:chr12:43354046-43354167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:64-191
               
               
               Cow position:chr12:15700162-15700033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):67, 53

               
               
               Conread position:64-191
               
               
               Cow position:chr12:24023720-24023847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:65-182
               
               
               Cow position:chr12:30210564-30210447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:94
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:65-190
               
               
               Cow position:chr12:44559931-44559806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:101
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:65-192
               
               
               Cow position:chr12:31517091-31517217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:103
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:65-234
               
               
               Cow position:chr12:27572159-27572325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:68-182
               
               
               Cow position:chr12:7978115-7978004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:68-192
               
               
               Cow position:chr12:9229422-9229546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:72-183
               
               
               Cow position:chr12:29483812-29483923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:90
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:73-179
               
               
               Cow position:chr12:26787862-26787758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:82-182
               
               
               Cow position:chr12:18963864-18963964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:85
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:82-189
               
               
               Cow position:chr12:44028574-44028469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:85-184
               
               
               Cow position:chr12:13011882-13011980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:84
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:1-171
               
               
               Cow position:chr13:21024790-21024956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):60, 7

               
               
               Conread position:1-178
               
               
               Cow position:chr13:17993777-17993955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):155, 0

               
               
               Conread position:1-191
               
               
               Cow position:chr13:585067-584882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:1-201
               
               
               Cow position:chr13:4416913-4417113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):9, 88

               
               
               Conread position:3-130
               
               
               Cow position:chr13:3387984-3387857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-131
               
               
               Cow position:chr13:43102789-43102915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:3-140
               
               
               Cow position:chr13:9702264-9702401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-140
               
               
               Cow position:chr13:21886873-21886736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:104
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-145
               
               
               Cow position:chr13:6377511-6377653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-145
               
               
               Cow position:chr13:8682259-8682401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-151
               
               
               Cow position:chr13:6972188-6972335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:3-154
               
               
               Cow position:chr13:26109805-26109957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):67, 142

               
               
               Conread position:3-155
               
               
               Cow position:chr13:19177977-19178134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:3-174
               
               
               Cow position:chr13:12769115-12768944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-178
               
               
               Cow position:chr13:10220765-10220940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-178
               
               
               Cow position:chr13:45499039-45499208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:3-178
               
               
               Cow position:chr13:61188336-61188512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:3-181
               
               
               Cow position:chr13:11146861-11147039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-181
               
               
               Cow position:chr13:40541301-40541123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-182
               
               
               Cow position:chr13:17845292-17845471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr13:4404342-4404515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr13:5263471-5263297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr13:14796013-14796189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):146, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr13:14879147-14878967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr13:18615179-18615368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr13:18877010-18877190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr13:18999339-18999519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr13:25579386-25579206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr13:42113823-42114003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr13:48222741-48222564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr13:54128790-54128612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:146
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr13:55080946-55081126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):28, 91

               
               
               Conread position:3-184
               
               
               Cow position:chr13:17159074-17158891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):167, 0

               
               
               Conread position:3-184
               
               
               Cow position:chr13:20880017-20879839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:3-184
               
               
               Cow position:chr13:37751262-37751082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):56, 44

               
               
               Conread position:3-184
               
               
               Cow position:chr13:37775398-37775222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-184
               
               
               Cow position:chr13:43183052-43183234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:3-185
               
               
               Cow position:chr13:2418554-2418374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:3-186
               
               
               Cow position:chr13:14927070-14927245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:3-191
               
               
               Cow position:chr13:6663948-6663761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:3-191
               
               
               Cow position:chr13:19174887-19174701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):149, 0

               
               
               Conread position:3-191
               
               
               Cow position:chr13:42672622-42672431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:3-201
               
               
               Cow position:chr13:27550543-27550741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-203
               
               
               Cow position:chr13:46350099-46349904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:5-182
               
               
               Cow position:chr13:16096385-16096561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):143, 27

               
               
               Conread position:5-184
               
               
               Cow position:chr13:6973972-6974146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:147
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:5-191
               
               
               Cow position:chr13:18929335-18929517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:7-135
               
               
               Cow position:chr13:7097398-7097522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:7-154
               
               
               Cow position:chr13:37405526-37405666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:7-170
               
               
               Cow position:chr13:33256309-33256470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:7-171
               
               
               Cow position:chr13:20115056-20115220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:7-177
               
               
               Cow position:chr13:44201821-44201985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):62, 46

               
               
               Conread position:7-184
               
               
               Cow position:chr13:50622999-50622827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:8-130
               
               
               Cow position:chr13:8423214-8423336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-131
               
               
               Cow position:chr13:242444-242567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:99
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-131
               
               
               Cow position:chr13:15868922-15869046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:8-131
               
               
               Cow position:chr13:24591407-24591529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:98
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:8-135
               
               
               Cow position:chr13:20854647-20854520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):60, 80

               
               
               Conread position:8-135
               
               
               Cow position:chr13:38395967-38396093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:8-141
               
               
               Cow position:chr13:53847306-53847179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:107
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-142
               
               
               Cow position:chr13:10055229-10055365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:8-144
               
               
               Cow position:chr13:9108859-9108730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-144
               
               
               Cow position:chr13:56432008-56431880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-145
               
               
               Cow position:chr13:9551176-9551307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-145
               
               
               Cow position:chr13:22729593-22729456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-145
               
               
               Cow position:chr13:56019184-56019048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:8-146
               
               
               Cow position:chr13:10986695-10986554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:8-147
               
               
               Cow position:chr13:21009639-21009787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-147
               
               
               Cow position:chr13:28081529-28081670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr13:9492586-9492720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr13:11260090-11260224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr13:20288151-20288287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr13:20520123-20520264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr13:23399579-23399715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr13:50714959-50715097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:8-149
               
               
               Cow position:chr13:53619813-53619954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-150
               
               
               Cow position:chr13:43811742-43811891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-153
               
               
               Cow position:chr13:5175412-5175551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:8-154
               
               
               Cow position:chr13:17619691-17619847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-154
               
               
               Cow position:chr13:37946573-37946434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-155
               
               
               Cow position:chr13:14351392-14351538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:8-155
               
               
               Cow position:chr13:37614385-37614240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:8-156
               
               
               Cow position:chr13:1037450-1037596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-156
               
               
               Cow position:chr13:43576823-43576971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-158
               
               
               Cow position:chr13:17624132-17624281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:8-160
               
               
               Cow position:chr13:620435-620287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):147, 92

               
               
               Conread position:8-160
               
               
               Cow position:chr13:15289106-15288959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):148, 47

               
               
               Conread position:8-161
               
               
               Cow position:chr13:8367531-8367677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-161
               
               
               Cow position:chr13:33518146-33517994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):53, 108

               
               
               Conread position:8-163
               
               
               Cow position:chr13:10279734-10279891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:8-163
               
               
               Cow position:chr13:11231484-11231330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):22, 48

               
               
               Conread position:8-163
               
               
               Cow position:chr13:40483167-40483018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-163
               
               
               Cow position:chr13:54128018-54127864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):69, 92

               
               
               Conread position:8-164
               
               
               Cow position:chr13:13780990-13781145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):67, 100

               
               
               Conread position:8-164
               
               
               Cow position:chr13:28376749-28376595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:8-167
               
               
               Cow position:chr13:8537631-8537790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):47, 62

               
               
               Conread position:8-168
               
               
               Cow position:chr13:20534710-20534865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-168
               
               
               Cow position:chr13:24107733-24107581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-168
               
               
               Cow position:chr13:52177415-52177570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):154, 48

               
               
               Conread position:8-170
               
               
               Cow position:chr13:15162823-15162661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):160, 155

               
               
               Conread position:8-170
               
               
               Cow position:chr13:20174551-20174712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-170
               
               
               Cow position:chr13:28695668-28695831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):11, 81

               
               
               Conread position:8-170
               
               
               Cow position:chr13:52027323-52027166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):10, 48

               
               
               Conread position:8-170
               
               
               Cow position:chr13:52477832-52477675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):158, 47

               
               
               Conread position:8-171
               
               
               Cow position:chr13:19779042-19778881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:8-171
               
               
               Cow position:chr13:21280688-21280525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-171
               
               
               Cow position:chr13:23805208-23805046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):158, 0

               
               
               Conread position:8-173
               
               
               Cow position:chr13:16099316-16099147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:8-173
               
               
               Cow position:chr13:19883221-19883063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-173
               
               
               Cow position:chr13:21246900-21246735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-174
               
               
               Cow position:chr13:390827-390667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:8-174
               
               
               Cow position:chr13:1339332-1339167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):163, 0

               
               
               Conread position:8-175
               
               
               Cow position:chr13:1539049-1539217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:8-175
               
               
               Cow position:chr13:9906541-9906708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):62, 46

               
               
               Conread position:8-176
               
               
               Cow position:chr13:369313-369146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:8-177
               
               
               Cow position:chr13:6976030-6975867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-177
               
               
               Cow position:chr13:56035044-56034882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr13:11670619-11670790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr13:17438049-17437876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr13:17823137-17822973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr13:54627294-54627468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):42, 111

               
               
               Conread position:8-180
               
               
               Cow position:chr13:17813284-17813452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:8-180
               
               
               Cow position:chr13:30315313-30315488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:8-180
               
               
               Cow position:chr13:37517377-37517196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):54, 94

               
               
               Conread position:8-181
               
               
               Cow position:chr13:15993196-15993370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):169, 113

               
               
               Conread position:8-181
               
               
               Cow position:chr13:22115488-22115661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):154, 15

               
               
               Conread position:8-181
               
               
               Cow position:chr13:48597722-48597888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr13:3153560-3153733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr13:5447364-5447538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):34, 118

               
               
               Conread position:8-182
               
               
               Cow position:chr13:8637507-8637681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr13:9124741-9124907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr13:11410521-11410697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):106, 47

               
               
               Conread position:8-182
               
               
               Cow position:chr13:14063708-14063538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr13:18058434-18058267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr13:19278908-19279077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr13:20784407-20784573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr13:50768404-50768579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):39, 152

               
               
               Conread position:8-182
               
               
               Cow position:chr13:53850633-53850807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr13:13797004-13796827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:143
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr13:14035186-14035011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr13:15041662-15041488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):158, 68

               
               
               Conread position:8-183
               
               
               Cow position:chr13:20042451-20042281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr13:20088906-20088731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr13:20360088-20360263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr13:20606308-20606133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr13:23214827-23215005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr13:24094504-24094333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr13:25978381-25978209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):70, 111

               
               
               Conread position:8-183
               
               
               Cow position:chr13:28536508-28536338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):148, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr13:32282937-32283111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):167, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr13:37521936-37521760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):20, 74

               
               
               Conread position:8-183
               
               
               Cow position:chr13:42302229-42302056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr13:47676124-47675951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr13:50457664-50457842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr13:52641138-52640964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr13:52893961-52894132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):150, 19

               
               
               Conread position:8-183
               
               
               Cow position:chr13:61047023-61047198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr13:1147338-1147165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr13:2773928-2774116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr13:9707934-9707764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):10, 47

               
               
               Conread position:8-184
               
               
               Cow position:chr13:9884342-9884519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):5, 17

               
               
               Conread position:8-184
               
               
               Cow position:chr13:10925110-10924936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:142
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr13:10989261-10989089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):57, 75

               
               
               Conread position:8-184
               
               
               Cow position:chr13:14576028-14576198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr13:15621622-15621794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr13:16908026-16908202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:142
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr13:18994935-18995108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):170, 139

               
               
               Conread position:8-184
               
               
               Cow position:chr13:21170341-21170513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):147, 48

               
               
               Conread position:8-184
               
               
               Cow position:chr13:21275669-21275844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr13:24230022-24230199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr13:24753706-24753872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr13:32017703-32017527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr13:38012152-38012317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr13:42229114-42229294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):47, 83

               
               
               Conread position:8-184
               
               
               Cow position:chr13:43788035-43787852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr13:43839874-43839691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr13:45352840-45353016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr13:46111781-46111950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr13:47186043-47186219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):10, 55

               
               
               Conread position:8-184
               
               
               Cow position:chr13:47243741-47243570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):70, 47

               
               
               Conread position:8-184
               
               
               Cow position:chr13:52055780-52055607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:148
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr13:55765363-55765193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):124, 45

               
               
               Conread position:8-185
               
               
               Cow position:chr13:37985935-37985758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-186
               
               
               Cow position:chr13:44278157-44278336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):169, 0

               
               
               Conread position:8-186
               
               
               Cow position:chr13:50646816-50646644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-190
               
               
               Cow position:chr13:26959985-26959808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):124, 47

               
               
               Conread position:8-191
               
               
               Cow position:chr13:60509311-60509128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:149
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr13:62007920-62008099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-193
               
               
               Cow position:chr13:37803692-37803886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:8-197
               
               
               Cow position:chr13:15974431-15974616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):95, 53

               
               
               Conread position:8-201
               
               
               Cow position:chr13:7104468-7104655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-201
               
               
               Cow position:chr13:11565652-11565839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-203
               
               
               Cow position:chr13:20110424-20110609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:8-205
               
               
               Cow position:chr13:20795395-20795205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:8-206
               
               
               Cow position:chr13:30711033-30711231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):11, 40

               
               
               Conread position:9-179
               
               
               Cow position:chr13:9899960-9900134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):17, 110

               
               
               Conread position:9-179
               
               
               Cow position:chr13:18197794-18197628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:9-183
               
               
               Cow position:chr13:3160216-3160380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):145, 46

               
               
               Conread position:9-184
               
               
               Cow position:chr13:15349441-15349263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):50, 85

               
               
               Conread position:9-184
               
               
               Cow position:chr13:37069155-37069330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:10-149
               
               
               Cow position:chr13:27871586-27871723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):15, 31

               
               
               Conread position:10-166
               
               
               Cow position:chr13:10408768-10408924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:10-179
               
               
               Cow position:chr13:19033370-19033538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:10-180
               
               
               Cow position:chr13:24215862-24215692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):148, 68

               
               
               Conread position:10-182
               
               
               Cow position:chr13:15083476-15083642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:10-182
               
               
               Cow position:chr13:23667070-23667236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:10-184
               
               
               Cow position:chr13:9142088-9142264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):53, 96

               
               
               Conread position:10-192
               
               
               Cow position:chr13:40154925-40154737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:10-206
               
               
               Cow position:chr13:34729028-34728840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):60, 94

               
               
               Conread position:11-131
               
               
               Cow position:chr13:2529136-2529018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:94
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:11-145
               
               
               Cow position:chr13:5659949-5659821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-145
               
               
               Cow position:chr13:19223467-19223601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-148
               
               
               Cow position:chr13:21127526-21127388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:11-148
               
               
               Cow position:chr13:57446297-57446170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:11-149
               
               
               Cow position:chr13:14644869-14645001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-158
               
               
               Cow position:chr13:24155326-24155473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-161
               
               
               Cow position:chr13:16476669-16476819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-162
               
               
               Cow position:chr13:20214251-20214404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:11-163
               
               
               Cow position:chr13:21955254-21955102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):62, 143

               
               
               Conread position:11-164
               
               
               Cow position:chr13:48126920-48127073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-167
               
               
               Cow position:chr13:20789703-20789544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):127, 60

               
               
               Conread position:11-167
               
               
               Cow position:chr13:28605579-28605422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:11-170
               
               
               Cow position:chr13:25521108-25520944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:11-171
               
               
               Cow position:chr13:6616947-6616787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-171
               
               
               Cow position:chr13:11201854-11202013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-173
               
               
               Cow position:chr13:34261051-34261205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:11-176
               
               
               Cow position:chr13:21171756-21171593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):145, 25

               
               
               Conread position:11-179
               
               
               Cow position:chr13:11103392-11103219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-181
               
               
               Cow position:chr13:15193072-15192904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):157, 58

               
               
               Conread position:11-181
               
               
               Cow position:chr13:34533113-34532950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr13:17611735-17611569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr13:18340347-18340516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr13:42200436-42200602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr13:6860991-6861165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr13:23167305-23167117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr13:27180853-27181025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr13:33054557-33054389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr13:37584633-37584804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):160, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr13:45593739-45593901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr13:49356233-49356065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr13:49823839-49824007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr13:52637113-52637284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):149, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr13:59170460-59170637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):64, 44

               
               
               Conread position:11-184
               
               
               Cow position:chr13:12673472-12673310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr13:23975350-23975180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):146, 102

               
               
               Conread position:11-184
               
               
               Cow position:chr13:43893517-43893337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):51, 12

               
               
               Conread position:11-184
               
               
               Cow position:chr13:56958793-56958953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:11-185
               
               
               Cow position:chr13:1155891-1155718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):145, 0

               
               
               Conread position:11-185
               
               
               Cow position:chr13:13775437-13775257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:11-185
               
               
               Cow position:chr13:20137633-20137809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):151, 0

               
               
               Conread position:11-188
               
               
               Cow position:chr13:41979321-41979161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):32, 45

               
               
               Conread position:11-191
               
               
               Cow position:chr13:12923690-12923866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:11-191
               
               
               Cow position:chr13:15195385-15195217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:11-191
               
               
               Cow position:chr13:15257553-15257377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-191
               
               
               Cow position:chr13:21981154-21980984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:11-191
               
               
               Cow position:chr13:38329434-38329608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:11-192
               
               
               Cow position:chr13:10711599-10711421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):170, 44

               
               
               Conread position:11-193
               
               
               Cow position:chr13:5279390-5279204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):126, 172

               
               
               Conread position:11-221
               
               
               Cow position:chr13:52913692-52913891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-223
               
               
               Cow position:chr13:20845054-20844842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):59, 43

               
               
               Conread position:12-149
               
               
               Cow position:chr13:16714449-16714315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:12-149
               
               
               Cow position:chr13:56300054-56299907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:12-150
               
               
               Cow position:chr13:16711164-16711300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:12-150
               
               
               Cow position:chr13:52459659-52459529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:12-153
               
               
               Cow position:chr13:17975147-17975009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):66, 25

               
               
               Conread position:12-154
               
               
               Cow position:chr13:26377604-26377461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):63, 77

               
               
               Conread position:12-161
               
               
               Cow position:chr13:38702823-38702667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):37, 114

               
               
               Conread position:12-167
               
               
               Cow position:chr13:33854867-33854718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:12-168
               
               
               Cow position:chr13:49475888-49476047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:12-169
               
               
               Cow position:chr13:23685186-23685029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-173
               
               
               Cow position:chr13:6113715-6113552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:12-177
               
               
               Cow position:chr13:8362930-8362770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:12-177
               
               
               Cow position:chr13:44003513-44003679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:12-181
               
               
               Cow position:chr13:6442290-6442128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):46, 32

               
               
               Conread position:12-181
               
               
               Cow position:chr13:37030166-37030324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr13:2776101-2776271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr13:13320614-13320780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr13:38873140-38872965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):36, 153

               
               
               Conread position:12-183
               
               
               Cow position:chr13:11434760-11434591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr13:25941449-25941279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr13:46515873-46516045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr13:6926329-6926502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr13:8699926-8699752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr13:11060788-11060973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr13:20271417-20271241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):36, 120

               
               
               Conread position:12-184
               
               
               Cow position:chr13:24796697-24796857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):91, 43

               
               
               Conread position:12-184
               
               
               Cow position:chr13:26480389-26480225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr13:28552403-28552573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr13:53865449-53865621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-191
               
               
               Cow position:chr13:10522756-10522926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:12-191
               
               
               Cow position:chr13:17498035-17498208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-191
               
               
               Cow position:chr13:25926605-25926782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:12-207
               
               
               Cow position:chr13:27198728-27198914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):191, 11

               
               
               Conread position:13-149
               
               
               Cow position:chr13:13533844-13533715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:13-160
               
               
               Cow position:chr13:29665835-29665983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:13-164
               
               
               Cow position:chr13:17135400-17135248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:13-167
               
               
               Cow position:chr13:5092577-5092426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):140, 42

               
               
               Conread position:13-175
               
               
               Cow position:chr13:1642170-1642010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:13-182
               
               
               Cow position:chr13:49283960-49283797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:13-183
               
               
               Cow position:chr13:7190785-7190952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):133, 24

               
               
               Conread position:13-184
               
               
               Cow position:chr13:5758519-5758357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):71, 43

               
               
               Conread position:13-184
               
               
               Cow position:chr13:6183614-6183435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:13-184
               
               
               Cow position:chr13:8667433-8667602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):139, 152

               
               
               Conread position:14-144
               
               
               Cow position:chr13:31398275-31398404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):40, 53

               
               
               Conread position:14-158
               
               
               Cow position:chr13:5911074-5910937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):120, 50

               
               
               Conread position:14-164
               
               
               Cow position:chr13:18215175-18215331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:14-165
               
               
               Cow position:chr13:62252028-62251878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:14-167
               
               
               Cow position:chr13:23960993-23960834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:14-174
               
               
               Cow position:chr13:16163405-16163557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:14-177
               
               
               Cow position:chr13:59461066-59461222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:14-179
               
               
               Cow position:chr13:39826372-39826536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):158, 0

               
               
               Conread position:14-181
               
               
               Cow position:chr13:29831608-29831449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:14-182
               
               
               Cow position:chr13:20666567-20666406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:14-182
               
               
               Cow position:chr13:23478847-23479013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:14-182
               
               
               Cow position:chr13:52934242-52934410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):55, 79

               
               
               Conread position:14-183
               
               
               Cow position:chr13:16834717-16834550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):50, 146

               
               
               Conread position:14-183
               
               
               Cow position:chr13:30258668-30258835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:14-183
               
               
               Cow position:chr13:34873404-34873573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-183
               
               
               Cow position:chr13:55162024-55162196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):44, 30

               
               
               Conread position:14-184
               
               
               Cow position:chr13:26261973-26261803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-184
               
               
               Cow position:chr13:37593132-37592961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:141
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:14-184
               
               
               Cow position:chr13:43595288-43595124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:14-184
               
               
               Cow position:chr13:54236627-54236788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:14-208
               
               
               Cow position:chr13:4158476-4158669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:15-168
               
               
               Cow position:chr13:17021904-17021757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:15-182
               
               
               Cow position:chr13:151785-151946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:15-182
               
               
               Cow position:chr13:52057378-52057540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:16-175
               
               
               Cow position:chr13:10534907-10535062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):76, 28

               
               
               Conread position:18-153
               
               
               Cow position:chr13:14543954-14544089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:18-173
               
               
               Cow position:chr13:3149610-3149459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:18-175
               
               
               Cow position:chr13:27028082-27027922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):119, 52

               
               
               Conread position:18-183
               
               
               Cow position:chr13:41157220-41157389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:18-184
               
               
               Cow position:chr13:6486430-6486266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):42, 133

               
               
               Conread position:18-184
               
               
               Cow position:chr13:9587762-9587604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:18-184
               
               
               Cow position:chr13:12876153-12875990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:18-184
               
               
               Cow position:chr13:15996857-15997019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:18-184
               
               
               Cow position:chr13:16014624-16014798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:18-184
               
               
               Cow position:chr13:18166555-18166717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:18-184
               
               
               Cow position:chr13:36345767-36345927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:18-184
               
               
               Cow position:chr13:47227546-47227374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:18-191
               
               
               Cow position:chr13:43919443-43919269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:18-200
               
               
               Cow position:chr13:4790300-4790115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:18-204
               
               
               Cow position:chr13:17716695-17716510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):164, 0

               
               
               Conread position:19-140
               
               
               Cow position:chr13:14782168-14782283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-142
               
               
               Cow position:chr13:20698463-20698340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:94
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:19-149
               
               
               Cow position:chr13:42203846-42203975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:19-149
               
               
               Cow position:chr13:42613906-42614034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-154
               
               
               Cow position:chr13:57929748-57929615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-155
               
               
               Cow position:chr13:6091588-6091452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):84, 45

               
               
               Conread position:19-161
               
               
               Cow position:chr13:20876095-20875955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-179
               
               
               Cow position:chr13:24009641-24009480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):77, 142

               
               
               Conread position:19-182
               
               
               Cow position:chr13:23141693-23141856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:19-182
               
               
               Cow position:chr13:28439231-28439392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:19-183
               
               
               Cow position:chr13:30148737-30148579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-184
               
               
               Cow position:chr13:40491041-40491200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):69, 19

               
               
               Conread position:19-184
               
               
               Cow position:chr13:48370480-48370312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):118, 30

               
               
               Conread position:19-184
               
               
               Cow position:chr13:54286903-54286744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:19-185
               
               
               Cow position:chr13:18491422-18491582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:19-191
               
               
               Cow position:chr13:20579738-20579900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-198
               
               
               Cow position:chr13:12449166-12448990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:19-236
               
               
               Cow position:chr13:38703055-38702839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):129, 43

               
               
               Conread position:20-148
               
               
               Cow position:chr13:20378497-20378371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:20-179
               
               
               Cow position:chr13:19393117-19393271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:20-183
               
               
               Cow position:chr13:25547761-25547598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:20-191
               
               
               Cow position:chr13:17058025-17057856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:21-185
               
               
               Cow position:chr13:8232835-8232984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:27-155
               
               
               Cow position:chr13:41806604-41806728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:27-176
               
               
               Cow position:chr13:16790045-16790186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:27-184
               
               
               Cow position:chr13:37980927-37980773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:27-185
               
               
               Cow position:chr13:20288480-20288638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):112, 47

               
               
               Conread position:30-183
               
               
               Cow position:chr13:28071704-28071857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):136, 25

               
               
               Conread position:32-184
               
               
               Cow position:chr13:37503749-37503601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):105, 18

               
               
               Conread position:35-176
               
               
               Cow position:chr13:22046175-22046031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:35-184
               
               
               Cow position:chr13:25695931-25695783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:36-188
               
               
               Cow position:chr13:62245749-62245599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:37-184
               
               
               Cow position:chr13:17350196-17350335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:37-191
               
               
               Cow position:chr13:11096015-11096171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):15, 72

               
               
               Conread position:38-156
               
               
               Cow position:chr13:43127810-43127692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:39-191
               
               
               Cow position:chr13:9386181-9386029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:40-184
               
               
               Cow position:chr13:51814087-51813951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:41-182
               
               
               Cow position:chr13:18172178-18172319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:41-191
               
               
               Cow position:chr13:13182038-13182186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):18, 76

               
               
               Conread position:42-184
               
               
               Cow position:chr13:39367801-39367948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:47-161
               
               
               Cow position:chr13:15808616-15808728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:48-171
               
               
               Cow position:chr13:6389245-6389367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:95
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:48-180
               
               
               Cow position:chr13:37381650-37381782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-182
               
               
               Cow position:chr13:6608535-6608399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:48-183
               
               
               Cow position:chr13:14771301-14771436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr13:3315826-3315690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr13:19750564-19750700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr13:21283859-21283719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):12, 104

               
               
               Conread position:48-184
               
               
               Cow position:chr13:26369373-26369508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr13:51940587-51940719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:48-191
               
               
               Cow position:chr13:2413878-2414021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):30, 78

               
               
               Conread position:48-191
               
               
               Cow position:chr13:36771570-36771432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:49-161
               
               
               Cow position:chr13:20797990-20797880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:90
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:49-184
               
               
               Cow position:chr13:11643789-11643924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:49-189
               
               
               Cow position:chr13:51080292-51080432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):114, 125

               
               
               Conread position:51-174
               
               
               Cow position:chr13:32363328-32363205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:95
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:51-176
               
               
               Cow position:chr13:40634716-40634842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:51-183
               
               
               Cow position:chr13:32387152-32387020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):123, 119

               
               
               Conread position:51-183
               
               
               Cow position:chr13:55727752-55727886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:51-184
               
               
               Cow position:chr13:3211400-3211534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:51-184
               
               
               Cow position:chr13:17563592-17563724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:51-184
               
               
               Cow position:chr13:56160594-56160459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:51-191
               
               
               Cow position:chr13:56148373-56148515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:55-175
               
               
               Cow position:chr13:29631464-29631584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-174
               
               
               Cow position:chr13:7076114-7076232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-177
               
               
               Cow position:chr13:42640243-42640364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-182
               
               
               Cow position:chr13:9265969-9265848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:56-182
               
               
               Cow position:chr13:51116168-51116041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr13:1043105-1042984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr13:24110337-24110465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr13:25450626-25450501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:56-185
               
               
               Cow position:chr13:36666417-36666288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:57-182
               
               
               Cow position:chr13:21188226-21188351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:96
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:57-184
               
               
               Cow position:chr13:1075181-1075054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:57-184
               
               
               Cow position:chr13:17837809-17837935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:58-182
               
               
               Cow position:chr13:21294934-21295058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:59-182
               
               
               Cow position:chr13:52536422-52536548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:59-191
               
               
               Cow position:chr13:7046730-7046863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:60-184
               
               
               Cow position:chr13:53330133-53330263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:64-180
               
               
               Cow position:chr13:37978265-37978150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:64-183
               
               
               Cow position:chr13:20231325-20231208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:64-183
               
               
               Cow position:chr13:43794426-43794538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:64-184
               
               
               Cow position:chr13:827111-827228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:99
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:64-184
               
               
               Cow position:chr13:8609682-8609562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):71, 89

               
               
               Conread position:64-184
               
               
               Cow position:chr13:15282069-15281955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:64-184
               
               
               Cow position:chr13:20519926-20520046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-185
               
               
               Cow position:chr13:8393032-8392911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:96
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-201
               
               
               Cow position:chr13:39398516-39398654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:66-184
               
               
               Cow position:chr13:43829110-43829229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:99
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:67-183
               
               
               Cow position:chr13:12547040-12546924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:67-184
               
               
               Cow position:chr13:51901452-51901572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:97
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:70-182
               
               
               Cow position:chr13:37640461-37640572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:70-189
               
               
               Cow position:chr13:28524446-28524326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:75-183
               
               
               Cow position:chr13:8652567-8652458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:91
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:75-183
               
               
               Cow position:chr13:51227865-51227754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:76-201
               
               
               Cow position:chr13:51857008-51856884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:79-182
               
               
               Cow position:chr13:46736095-46736198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:84
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:79-184
               
               
               Cow position:chr13:18516926-18517030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:86
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:1-138
               
               
               Cow position:chr14:25277635-25277766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:1-144
               
               
               Cow position:chr14:19988199-19988056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):139, 7

               
               
               Conread position:1-156
               
               
               Cow position:chr14:36559363-36559212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:1-178
               
               
               Cow position:chr14:21535440-21535270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:1-179
               
               
               Cow position:chr14:36166803-36166973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:1-184
               
               
               Cow position:chr14:38144247-38144065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:147
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:2-149
               
               
               Cow position:chr14:31893442-31893587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):18, 54

               
               
               Conread position:2-185
               
               
               Cow position:chr14:1646320-1646143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):104, 7

               
               
               Conread position:3-140
               
               
               Cow position:chr14:41871725-41871589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:3-148
               
               
               Cow position:chr14:21530212-21530067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-149
               
               
               Cow position:chr14:49501143-49500999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:3-154
               
               
               Cow position:chr14:20010644-20010493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-168
               
               
               Cow position:chr14:28465354-28465191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):154, 0

               
               
               Conread position:3-176
               
               
               Cow position:chr14:28115327-28115153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):29, 95

               
               
               Conread position:3-177
               
               
               Cow position:chr14:31130513-31130340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:3-181
               
               
               Cow position:chr14:34100945-34101124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:3-181
               
               
               Cow position:chr14:42422952-42423130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-181
               
               
               Cow position:chr14:46431931-46432108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):157, 0

               
               
               Conread position:3-182
               
               
               Cow position:chr14:10693393-10693217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):147, 0

               
               
               Conread position:3-182
               
               
               Cow position:chr14:18937289-18937110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-182
               
               
               Cow position:chr14:21498747-21498567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):104, 96

               
               
               Conread position:3-182
               
               
               Cow position:chr14:47276837-47276657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr14:5222421-5222250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr14:5553181-5553360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr14:8083060-8083240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):170, 76

               
               
               Conread position:3-183
               
               
               Cow position:chr14:11043630-11043450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr14:11470286-11470110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr14:12342978-12342797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):65, 50

               
               
               Conread position:3-183
               
               
               Cow position:chr14:16237646-16237471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr14:35420898-35420723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr14:44615287-44615107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-184
               
               
               Cow position:chr14:4227359-4227180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-184
               
               
               Cow position:chr14:28694855-28694674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-187
               
               
               Cow position:chr14:26825052-26825236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-191
               
               
               Cow position:chr14:15423955-15424143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-191
               
               
               Cow position:chr14:44713280-44713468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:150
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-201
               
               
               Cow position:chr14:6600088-6599898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:3-215
               
               
               Cow position:chr14:24597915-24597706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):177, 0

               
               
               Conread position:4-131
               
               
               Cow position:chr14:24754818-24754945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:104
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:4-183
               
               
               Cow position:chr14:40002114-40001937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:5-182
               
               
               Cow position:chr14:33300560-33300743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):26, 152

               
               
               Conread position:5-185
               
               
               Cow position:chr14:22941874-22941685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:7-183
               
               
               Cow position:chr14:7127728-7127899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:7-184
               
               
               Cow position:chr14:7695131-7695309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):108, 145

               
               
               Conread position:8-130
               
               
               Cow position:chr14:29592847-29592724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:8-131
               
               
               Cow position:chr14:21968639-21968520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-132
               
               
               Cow position:chr14:21946265-21946382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-141
               
               
               Cow position:chr14:45955157-45955290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:106
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-145
               
               
               Cow position:chr14:37504381-37504518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr14:10721833-10721700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr14:16344280-16344140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr14:21593133-21592997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr14:24746325-24746473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr14:36151193-36151331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:112
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-149
               
               
               Cow position:chr14:8590976-8590841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-149
               
               
               Cow position:chr14:8949520-8949657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-149
               
               
               Cow position:chr14:11280244-11280106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):72, 47

               
               
               Conread position:8-149
               
               
               Cow position:chr14:22231039-22230901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):66, 47

               
               
               Conread position:8-149
               
               
               Cow position:chr14:25912523-25912658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-150
               
               
               Cow position:chr14:27609044-27609179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):85, 42

               
               
               Conread position:8-154
               
               
               Cow position:chr14:11643377-11643237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-154
               
               
               Cow position:chr14:19772405-19772264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:8-154
               
               
               Cow position:chr14:20035587-20035734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):54, 91

               
               
               Conread position:8-155
               
               
               Cow position:chr14:19774348-19774207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:8-156
               
               
               Cow position:chr14:20513096-20513244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-156
               
               
               Cow position:chr14:29282621-29282769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-161
               
               
               Cow position:chr14:30023331-30023178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):60, 43

               
               
               Conread position:8-164
               
               
               Cow position:chr14:10706747-10706896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:8-164
               
               
               Cow position:chr14:10920699-10920541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:8-167
               
               
               Cow position:chr14:11079324-11079477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:8-168
               
               
               Cow position:chr14:15518534-15518374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-168
               
               
               Cow position:chr14:22988904-22989058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-170
               
               
               Cow position:chr14:5668252-5668090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-172
               
               
               Cow position:chr14:21357426-21357585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-172
               
               
               Cow position:chr14:26886876-26886712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-173
               
               
               Cow position:chr14:1708790-1708625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-174
               
               
               Cow position:chr14:46490599-46490432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):62, 7

               
               
               Conread position:8-175
               
               
               Cow position:chr14:7271389-7271221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):45, 157

               
               
               Conread position:8-176
               
               
               Cow position:chr14:13731228-13731064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):111, 55

               
               
               Conread position:8-176
               
               
               Cow position:chr14:20915112-20914943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):51, 64

               
               
               Conread position:8-179
               
               
               Cow position:chr14:2975217-2975052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):125, 58

               
               
               Conread position:8-179
               
               
               Cow position:chr14:7094195-7094020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr14:11285448-11285615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr14:20110852-20110685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr14:23419662-23419835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr14:27999170-27998998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr14:35651911-35651748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-180
               
               
               Cow position:chr14:26115928-26116099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr14:13385235-13385407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr14:20984205-20984377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr14:33066664-33066491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr14:39423026-39422843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr14:10078123-10078308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr14:20016841-20016667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr14:20826360-20826530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr14:21933476-21933303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr14:24921967-24922138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):150, 62

               
               
               Conread position:8-182
               
               
               Cow position:chr14:34775880-34775706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr14:37436853-37436670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr14:1803250-1803072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):94, 19

               
               
               Conread position:8-183
               
               
               Cow position:chr14:9403330-9403505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr14:15313427-15313602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr14:17335483-17335312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr14:17755445-17755609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr14:19852067-19851895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):149, 135

               
               
               Conread position:8-183
               
               
               Cow position:chr14:22866003-22865829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr14:23104127-23103960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):70, 47

               
               
               Conread position:8-183
               
               
               Cow position:chr14:25986381-25986557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):75, 87

               
               
               Conread position:8-183
               
               
               Cow position:chr14:27364446-27364618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):146, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr14:28304918-28304742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):123, 88

               
               
               Conread position:8-183
               
               
               Cow position:chr14:29964886-29965060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr14:42419413-42419232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr14:45052307-45052484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr14:45312665-45312833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr14:4282641-4282467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):60, 11

               
               
               Conread position:8-184
               
               
               Cow position:chr14:4877358-4877189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):85, 47

               
               
               Conread position:8-184
               
               
               Cow position:chr14:5630037-5630204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr14:5959124-5958945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr14:6541858-6541682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):83, 47

               
               
               Conread position:8-184
               
               
               Cow position:chr14:10858309-10858477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):92, 42

               
               
               Conread position:8-184
               
               
               Cow position:chr14:12512022-12511859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr14:15211803-15211968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr14:21557156-21556984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr14:23424134-23424301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr14:23442895-23443062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr14:24945628-24945449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr14:28924034-28924210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr14:35381458-35381632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:144
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr14:40347773-40347604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):103, 44

               
               
               Conread position:8-184
               
               
               Cow position:chr14:41302974-41302788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):51, 76

               
               
               Conread position:8-184
               
               
               Cow position:chr14:45045465-45045639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr14:47673009-47672843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):20, 46

               
               
               Conread position:8-184
               
               
               Cow position:chr14:48496278-48496105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:8-185
               
               
               Cow position:chr14:33247551-33247386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-185
               
               
               Cow position:chr14:38674062-38673878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):61, 156

               
               
               Conread position:8-186
               
               
               Cow position:chr14:49940882-49941055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-187
               
               
               Cow position:chr14:22916425-22916246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):41, 23

               
               
               Conread position:8-191
               
               
               Cow position:chr14:15428347-15428527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr14:18309431-18309258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr14:24712763-24712575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr14:36443148-36442969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr14:49487833-49488008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):173, 25

               
               
               Conread position:8-191
               
               
               Cow position:chr14:50362661-50362843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:8-192
               
               
               Cow position:chr14:37901869-37902043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-196
               
               
               Cow position:chr14:11472362-11472177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):162, 0

               
               
               Conread position:9-155
               
               
               Cow position:chr14:32784248-32784102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:9-166
               
               
               Cow position:chr14:18112721-18112569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):82, 46

               
               
               Conread position:9-178
               
               
               Cow position:chr14:7357888-7358058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):18, 151

               
               
               Conread position:9-183
               
               
               Cow position:chr14:19594265-19594096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:9-184
               
               
               Cow position:chr14:8101667-8101832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:9-191
               
               
               Cow position:chr14:4203228-4203049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):11, 53

               
               
               Conread position:9-192
               
               
               Cow position:chr14:42330216-42330405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:9-195
               
               
               Cow position:chr14:18559187-18559007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):184, 46

               
               
               Conread position:10-131
               
               
               Cow position:chr14:5044545-5044660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:10-153
               
               
               Cow position:chr14:40952137-40952282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:10-168
               
               
               Cow position:chr14:20483834-20483672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:10-175
               
               
               Cow position:chr14:12617623-12617466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:10-178
               
               
               Cow position:chr14:27303520-27303694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:10-183
               
               
               Cow position:chr14:36437618-36437445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:10-184
               
               
               Cow position:chr14:36289920-36289759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):125, 50

               
               
               Conread position:11-139
               
               
               Cow position:chr14:39097376-39097505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:11-149
               
               
               Cow position:chr14:11981336-11981474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):123, 92

               
               
               Conread position:11-149
               
               
               Cow position:chr14:25284867-25285005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-155
               
               
               Cow position:chr14:27848051-27848198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):53, 9

               
               
               Conread position:11-161
               
               
               Cow position:chr14:8027695-8027541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:11-161
               
               
               Cow position:chr14:27653033-27653183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-161
               
               
               Cow position:chr14:37152063-37151921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-161
               
               
               Cow position:chr14:41267851-41267713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-171
               
               
               Cow position:chr14:38747549-38747707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:11-175
               
               
               Cow position:chr14:23237795-23237637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-176
               
               
               Cow position:chr14:49817814-49817649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):152, 45

               
               
               Conread position:11-177
               
               
               Cow position:chr14:18270232-18270396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:11-178
               
               
               Cow position:chr14:4867951-4868118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):70, 92

               
               
               Conread position:11-178
               
               
               Cow position:chr14:24785531-24785694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:11-179
               
               
               Cow position:chr14:13845861-13846022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:11-179
               
               
               Cow position:chr14:35421213-35421045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):109, 60

               
               
               Conread position:11-182
               
               
               Cow position:chr14:11576941-11577108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr14:26655265-26655094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr14:47200262-47200083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):42, 74

               
               
               Conread position:11-183
               
               
               Cow position:chr14:7198367-7198539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr14:13516120-13515951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:143
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr14:14224437-14224609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr14:18941416-18941245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr14:20245296-20245128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr14:26628654-26628482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr14:30756713-30756884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr14:35065558-35065730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr14:7036488-7036315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr14:8541335-8541170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr14:11056862-11056691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):49, 140

               
               
               Conread position:11-184
               
               
               Cow position:chr14:18350995-18350815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr14:29734490-29734322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr14:38286113-38285927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr14:40754372-40754205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-185
               
               
               Cow position:chr14:12244510-12244341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):153, 44

               
               
               Conread position:11-191
               
               
               Cow position:chr14:20481980-20481794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):37, 131

               
               
               Conread position:11-191
               
               
               Cow position:chr14:25903404-25903580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:12-139
               
               
               Cow position:chr14:12137887-12138014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-147
               
               
               Cow position:chr14:31342082-31342217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-147
               
               
               Cow position:chr14:37236240-37236375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-164
               
               
               Cow position:chr14:14466587-14466434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):5, 16

               
               
               Conread position:12-164
               
               
               Cow position:chr14:24387321-24387463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-170
               
               
               Cow position:chr14:10937543-10937701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-175
               
               
               Cow position:chr14:36425531-36425374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:12-177
               
               
               Cow position:chr14:42246874-42247040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:12-179
               
               
               Cow position:chr14:50519305-50519142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:12-181
               
               
               Cow position:chr14:145636-145472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:12-181
               
               
               Cow position:chr14:24399431-24399263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr14:18412721-18412551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:140
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr14:27823302-27823472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr14:8923714-8923543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):47, 7

               
               
               Conread position:12-183
               
               
               Cow position:chr14:12081253-12081093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):66, 43

               
               
               Conread position:12-184
               
               
               Cow position:chr14:20466809-20466972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr14:27733481-27733644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr14:33328835-33329002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):163, 43

               
               
               Conread position:12-184
               
               
               Cow position:chr14:35503236-35503404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):104, 43

               
               
               Conread position:12-184
               
               
               Cow position:chr14:48740997-48740827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:12-185
               
               
               Cow position:chr14:28378230-28378402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:12-191
               
               
               Cow position:chr14:24236695-24236874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):36, 68

               
               
               Conread position:12-201
               
               
               Cow position:chr14:27076839-27077035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):52, 190

               
               
               Conread position:12-207
               
               
               Cow position:chr14:30260623-30260830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):42, 178

               
               
               Conread position:13-150
               
               
               Cow position:chr14:14633047-14632910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:13-155
               
               
               Cow position:chr14:4848219-4848361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:13-181
               
               
               Cow position:chr14:7316667-7316833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:14-145
               
               
               Cow position:chr14:47893988-47894119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-171
               
               
               Cow position:chr14:26941346-26941192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:14-177
               
               
               Cow position:chr14:12520429-12520267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:14-179
               
               
               Cow position:chr14:48744390-48744552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:14-180
               
               
               Cow position:chr14:40230762-40230597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:14-182
               
               
               Cow position:chr14:11641668-11641505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:14-182
               
               
               Cow position:chr14:18301826-18302001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:14-183
               
               
               Cow position:chr14:7342335-7342496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:14-183
               
               
               Cow position:chr14:12884139-12884304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):90, 41

               
               
               Conread position:14-183
               
               
               Cow position:chr14:40474437-40474605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:14-191
               
               
               Cow position:chr14:16749821-16749636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:14-192
               
               
               Cow position:chr14:19832520-19832344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):162, 42

               
               
               Conread position:15-150
               
               
               Cow position:chr14:38548676-38548814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:15-183
               
               
               Cow position:chr14:33457169-33457002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:15-184
               
               
               Cow position:chr14:23078916-23078750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:16-168
               
               
               Cow position:chr14:37935037-37934884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:16-183
               
               
               Cow position:chr14:10609554-10609721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:16-183
               
               
               Cow position:chr14:20234317-20234152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:16-184
               
               
               Cow position:chr14:1796070-1796231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:18-148
               
               
               Cow position:chr14:24806475-24806603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:18-161
               
               
               Cow position:chr14:13379750-13379609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:18-179
               
               
               Cow position:chr14:4491318-4491473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-138
               
               
               Cow position:chr14:24880725-24880609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:19-149
               
               
               Cow position:chr14:3923787-3923915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:19-149
               
               
               Cow position:chr14:8036203-8036331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:19-177
               
               
               Cow position:chr14:11576075-11576233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:19-179
               
               
               Cow position:chr14:24981324-24981492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):36, 140

               
               
               Conread position:19-179
               
               
               Cow position:chr14:42440041-42439872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:19-183
               
               
               Cow position:chr14:16287360-16287523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:19-184
               
               
               Cow position:chr14:37447588-37447425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):51, 37

               
               
               Conread position:19-189
               
               
               Cow position:chr14:42153525-42153359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):141, 36

               
               
               Conread position:20-131
               
               
               Cow position:chr14:16593261-16593371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:92
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:20-184
               
               
               Cow position:chr14:19618871-19618709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:20-184
               
               
               Cow position:chr14:48900047-48900216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):35, 102

               
               
               Conread position:21-179
               
               
               Cow position:chr14:38920830-38920990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):44, 137

               
               
               Conread position:21-181
               
               
               Cow position:chr14:41191216-41191056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:25-167
               
               
               Cow position:chr14:23465166-23465024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):40, 14

               
               
               Conread position:28-184
               
               
               Cow position:chr14:20712801-20712650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:30-149
               
               
               Cow position:chr14:15228432-15228547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:31-176
               
               
               Cow position:chr14:6735975-6735829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):39, 99

               
               
               Conread position:33-184
               
               
               Cow position:chr14:15491046-15491198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):35, 29

               
               
               Conread position:42-184
               
               
               Cow position:chr14:3943653-3943508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:46-182
               
               
               Cow position:chr14:39618474-39618336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:48-168
               
               
               Cow position:chr14:14280138-14280258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-174
               
               
               Cow position:chr14:20070977-20071103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-183
               
               
               Cow position:chr14:26097787-26097652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr14:25611392-25611528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):120, 28

               
               
               Conread position:48-184
               
               
               Cow position:chr14:33830208-33830343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:48-185
               
               
               Cow position:chr14:24580547-24580683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:48-191
               
               
               Cow position:chr14:30431662-30431519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-201
               
               
               Cow position:chr14:42436931-42437081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:49-183
               
               
               Cow position:chr14:4109583-4109451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):47, 102

               
               
               Conread position:49-195
               
               
               Cow position:chr14:4990909-4991055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:50-183
               
               
               Cow position:chr14:18657699-18657566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:51-184
               
               
               Cow position:chr14:34331417-34331284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:55-167
               
               
               Cow position:chr14:21964050-21964160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:92
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:56-179
               
               
               Cow position:chr14:4209420-4209541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:56-180
               
               
               Cow position:chr14:25073039-25073163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:103
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):49, 23

               
               
               Conread position:56-182
               
               
               Cow position:chr14:34983781-34983910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr14:19129420-19129548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:57-182
               
               
               Cow position:chr14:42276541-42276663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:102
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:57-184
               
               
               Cow position:chr14:25824610-25824737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):16, 38

               
               
               Conread position:58-173
               
               
               Cow position:chr14:16761693-16761579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:92
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:58-183
               
               
               Cow position:chr14:10691712-10691587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:58-184
               
               
               Cow position:chr14:12035327-12035449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:59-191
               
               
               Cow position:chr14:37883999-37883867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:61-182
               
               
               Cow position:chr14:45167207-45167086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:94
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-184
               
               
               Cow position:chr14:19863512-19863391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:100
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:64-184
               
               
               Cow position:chr14:46997961-46998081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-191
               
               
               Cow position:chr14:1868461-1868334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-191
               
               
               Cow position:chr14:15039691-15039565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:65-184
               
               
               Cow position:chr14:22997653-22997535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:93
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:65-200
               
               
               Cow position:chr14:44084566-44084431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:66-184
               
               
               Cow position:chr14:27275087-27275203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:67-164
               
               
               Cow position:chr14:19513619-19513522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:81
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:67-183
               
               
               Cow position:chr14:21406785-21406669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:67-184
               
               
               Cow position:chr14:34399873-34399756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:96
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:67-184
               
               
               Cow position:chr14:34449046-34448929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:96
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:69-183
               
               
               Cow position:chr14:26456300-26456414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:71-180
               
               
               Cow position:chr14:36536381-36536270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:90
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:71-184
               
               
               Cow position:chr14:3173808-3173695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:89
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:71-192
               
               
               Cow position:chr14:17841362-17841242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:94
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:72-184
               
               
               Cow position:chr14:33309573-33309461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:80-179
               
               
               Cow position:chr14:25403997-25403898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:86
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:81-184
               
               
               Cow position:chr14:24986694-24986591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:84
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-155
               
               
               Cow position:chr15:46059266-46059422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):67, 8

               
               
               Conread position:1-164
               
               
               Cow position:chr15:7811621-7811460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:1-184
               
               
               Cow position:chr15:49922045-49922223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:1-184
               
               
               Cow position:chr15:52432247-52432435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:2-148
               
               
               Cow position:chr15:30983894-30983754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):18, 54

               
               
               Conread position:2-178
               
               
               Cow position:chr15:16246504-16246679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:2-183
               
               
               Cow position:chr15:11614185-11614004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-128
               
               
               Cow position:chr15:41348281-41348407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:3-135
               
               
               Cow position:chr15:38228046-38228177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:3-147
               
               
               Cow position:chr15:33729796-33729945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):61, 101

               
               
               Conread position:3-149
               
               
               Cow position:chr15:6332551-6332413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:3-172
               
               
               Cow position:chr15:17140106-17139948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:3-175
               
               
               Cow position:chr15:28957253-28957425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-178
               
               
               Cow position:chr15:17853807-17853639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:3-178
               
               
               Cow position:chr15:22930439-22930267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:3-182
               
               
               Cow position:chr15:15511917-15512096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-182
               
               
               Cow position:chr15:20290147-20289975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr15:4919159-4918981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):48, 158

               
               
               Conread position:3-183
               
               
               Cow position:chr15:7479088-7478908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr15:7956167-7955984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):134, 47

               
               
               Conread position:3-183
               
               
               Cow position:chr15:9465585-9465765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:145
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr15:18763129-18762951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):68, 128

               
               
               Conread position:3-183
               
               
               Cow position:chr15:19771048-19771220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr15:19807812-19807627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr15:20856568-20856388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr15:34552980-34552801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):157, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr15:38860221-38860041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):79, 171

               
               
               Conread position:3-183
               
               
               Cow position:chr15:45478910-45479090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-184
               
               
               Cow position:chr15:37069977-37069797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:3-184
               
               
               Cow position:chr15:45245630-45245455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:3-185
               
               
               Cow position:chr15:31028749-31028567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-185
               
               
               Cow position:chr15:33662422-33662604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-191
               
               
               Cow position:chr15:697890-698078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-194
               
               
               Cow position:chr15:25451912-25452110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):45, 83

               
               
               Conread position:3-197
               
               
               Cow position:chr15:20370541-20370353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):169, 61

               
               
               Conread position:4-181
               
               
               Cow position:chr15:864092-864264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:4-208
               
               
               Cow position:chr15:38420642-38420443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:5-131
               
               
               Cow position:chr15:27280550-27280675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:5-179
               
               
               Cow position:chr15:5691015-5691182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:5-182
               
               
               Cow position:chr15:36846274-36846090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):110, 158

               
               
               Conread position:5-183
               
               
               Cow position:chr15:38652690-38652513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:5-184
               
               
               Cow position:chr15:6462580-6462408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:5-201
               
               
               Cow position:chr15:10088232-10088424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):76, 51

               
               
               Conread position:7-184
               
               
               Cow position:chr15:4295674-4295852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:7-191
               
               
               Cow position:chr15:7308243-7308061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-135
               
               
               Cow position:chr15:26380831-26380704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-139
               
               
               Cow position:chr15:12034779-12034641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-139
               
               
               Cow position:chr15:14760724-14760593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:105
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-147
               
               
               Cow position:chr15:40494558-40494420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:8-147
               
               
               Cow position:chr15:41049542-41049410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr15:11909031-11908895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr15:20566044-20566184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr15:33751185-33751051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):22, 48

               
               
               Conread position:8-148
               
               
               Cow position:chr15:36643930-36643796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:8-149
               
               
               Cow position:chr15:27975958-27975817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-150
               
               
               Cow position:chr15:30956408-30956268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:8-155
               
               
               Cow position:chr15:8331284-8331142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:8-155
               
               
               Cow position:chr15:36353585-36353728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-156
               
               
               Cow position:chr15:25366149-25366002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):64, 116

               
               
               Conread position:8-156
               
               
               Cow position:chr15:43674030-43673883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:8-158
               
               
               Cow position:chr15:33897742-33897887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-159
               
               
               Cow position:chr15:49924953-49925114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-160
               
               
               Cow position:chr15:10049398-10049243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:8-161
               
               
               Cow position:chr15:16644872-16644720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:8-161
               
               
               Cow position:chr15:40562767-40562616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-164
               
               
               Cow position:chr15:21520058-21520220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:8-166
               
               
               Cow position:chr15:15147292-15147143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:8-168
               
               
               Cow position:chr15:19002367-19002207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-170
               
               
               Cow position:chr15:38386502-38386665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):156, 0

               
               
               Conread position:8-171
               
               
               Cow position:chr15:8579221-8579058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):64, 130

               
               
               Conread position:8-171
               
               
               Cow position:chr15:33693456-33693293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-173
               
               
               Cow position:chr15:28823899-28823741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):7, 45

               
               
               Conread position:8-173
               
               
               Cow position:chr15:35577109-35577281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-175
               
               
               Cow position:chr15:19950402-19950558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:8-176
               
               
               Cow position:chr15:4248064-4248229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:8-176
               
               
               Cow position:chr15:23275449-23275623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:8-176
               
               
               Cow position:chr15:44119553-44119388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:8-177
               
               
               Cow position:chr15:12045625-12045455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:8-177
               
               
               Cow position:chr15:16603745-16603907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:8-177
               
               
               Cow position:chr15:34284494-34284328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):108, 47

               
               
               Conread position:8-178
               
               
               Cow position:chr15:1330193-1330020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:8-178
               
               
               Cow position:chr15:4138050-4138215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):52, 60

               
               
               Conread position:8-178
               
               
               Cow position:chr15:31283298-31283468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr15:17084122-17084293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr15:29026967-29026797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):165, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr15:30001612-30001778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):84, 47

               
               
               Conread position:8-181
               
               
               Cow position:chr15:4485064-4485240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr15:16657386-16657557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):141, 154

               
               
               Conread position:8-181
               
               
               Cow position:chr15:20459395-20459222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:140
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr15:22984484-22984662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):45, 76

               
               
               Conread position:8-181
               
               
               Cow position:chr15:24616483-24616657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr15:29927880-29928054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):154, 109

               
               
               Conread position:8-181
               
               
               Cow position:chr15:36621316-36621482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr15:37719672-37719506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):149, 47

               
               
               Conread position:8-181
               
               
               Cow position:chr15:43114802-43114643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr15:2522530-2522691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr15:10246079-10245910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr15:16928177-16928007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr15:19554010-19553834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):158, 69

               
               
               Conread position:8-182
               
               
               Cow position:chr15:21832524-21832349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):52, 32

               
               
               Conread position:8-182
               
               
               Cow position:chr15:25208843-25208670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr15:30471063-30470885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr15:48095272-48095449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):60, 149

               
               
               Conread position:8-182
               
               
               Cow position:chr15:50332891-50333067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):55, 73

               
               
               Conread position:8-182
               
               
               Cow position:chr15:53019003-53019180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):48, 15

               
               
               Conread position:8-183
               
               
               Cow position:chr15:1857642-1857812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr15:2953217-2953046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr15:6905455-6905621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr15:7750998-7750824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr15:12723000-12723176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):62, 165

               
               
               Conread position:8-183
               
               
               Cow position:chr15:15041512-15041334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):36, 121

               
               
               Conread position:8-183
               
               
               Cow position:chr15:15177233-15177404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr15:17233102-17233281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr15:19942513-19942680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr15:21363037-21362867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr15:22938851-22938674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr15:23798606-23798442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr15:24031113-24031288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):64, 51

               
               
               Conread position:8-183
               
               
               Cow position:chr15:25595611-25595440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr15:25667309-25667134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):125, 133

               
               
               Conread position:8-183
               
               
               Cow position:chr15:27063602-27063433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr15:36435118-36435293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr15:37381545-37381712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr15:38837660-38837835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):46, 151

               
               
               Conread position:8-183
               
               
               Cow position:chr15:38935320-38935496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):51, 114

               
               
               Conread position:8-183
               
               
               Cow position:chr15:39619055-39619230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr15:40015089-40014914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr15:40231034-40231209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr15:40379128-40379302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr15:42380841-42381016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr15:43827856-43827684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr15:52482913-52482740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr15:53163936-53164109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):82, 68

               
               
               Conread position:8-184
               
               
               Cow position:chr15:225887-225715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr15:286388-286567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr15:795101-794932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):85, 54

               
               
               Conread position:8-184
               
               
               Cow position:chr15:5158287-5158463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr15:5717635-5717799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr15:6037530-6037366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr15:9921850-9921679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr15:17100788-17100621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr15:20534537-20534361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr15:21822011-21821835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:144
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr15:26903109-26903278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr15:29810041-29810208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr15:31495302-31495134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr15:31928982-31928807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):22, 48

               
               
               Conread position:8-184
               
               
               Cow position:chr15:35641928-35642109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):149, 107

               
               
               Conread position:8-184
               
               
               Cow position:chr15:36391587-36391764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):150, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr15:38883058-38883236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):45, 147

               
               
               Conread position:8-184
               
               
               Cow position:chr15:39474019-39473846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr15:43626381-43626558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:148
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):47, 71

               
               
               Conread position:8-184
               
               
               Cow position:chr15:46563561-46563395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr15:49273878-49274042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr15:52791856-52792026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:8-185
               
               
               Cow position:chr15:13554022-13554198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):174, 0

               
               
               Conread position:8-185
               
               
               Cow position:chr15:23572773-23572596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:144
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-187
               
               
               Cow position:chr15:21803749-21803569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):47, 114

               
               
               Conread position:8-190
               
               
               Cow position:chr15:17124555-17124373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr15:85330-85152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr15:2141406-2141207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr15:5408978-5408810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr15:13395464-13395643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr15:22553625-22553446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-196
               
               
               Cow position:chr15:26529811-26529991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-206
               
               
               Cow position:chr15:36849081-36849292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):49, 105

               
               
               Conread position:8-215
               
               
               Cow position:chr15:17227013-17226806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):52, 83

               
               
               Conread position:9-149
               
               
               Cow position:chr15:14868632-14868486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:9-155
               
               
               Cow position:chr15:18941951-18942090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:9-179
               
               
               Cow position:chr15:43715247-43715411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):139, 54

               
               
               Conread position:9-183
               
               
               Cow position:chr15:4076248-4076410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:9-183
               
               
               Cow position:chr15:42888918-42888748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):152, 0

               
               
               Conread position:9-184
               
               
               Cow position:chr15:22939407-22939236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:9-184
               
               
               Cow position:chr15:26912156-26911987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:9-191
               
               
               Cow position:chr15:2931654-2931470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):51, 45

               
               
               Conread position:10-148
               
               
               Cow position:chr15:44402034-44401896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:10-167
               
               
               Cow position:chr15:16415212-16415371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):148, 0

               
               
               Conread position:10-179
               
               
               Cow position:chr15:26158681-26158515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):148, 0

               
               
               Conread position:10-184
               
               
               Cow position:chr15:6647368-6647538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):14, 53

               
               
               Conread position:10-184
               
               
               Cow position:chr15:23913141-23912962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:10-185
               
               
               Cow position:chr15:8665689-8665510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:11-135
               
               
               Cow position:chr15:52997085-52996959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:11-154
               
               
               Cow position:chr15:49483545-49483687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:11-155
               
               
               Cow position:chr15:41624978-41624834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-161
               
               
               Cow position:chr15:10332920-10333075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:11-171
               
               
               Cow position:chr15:19976466-19976627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):67, 83

               
               
               Conread position:11-172
               
               
               Cow position:chr15:9314645-9314803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:11-173
               
               
               Cow position:chr15:53716353-53716512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:11-174
               
               
               Cow position:chr15:21942971-21943134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-176
               
               
               Cow position:chr15:12974253-12974420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):49, 101

               
               
               Conread position:11-176
               
               
               Cow position:chr15:44089246-44089081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):157, 86

               
               
               Conread position:11-179
               
               
               Cow position:chr15:26896780-26896610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:11-179
               
               
               Cow position:chr15:41475908-41475746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-181
               
               
               Cow position:chr15:20723063-20722900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:11-181
               
               
               Cow position:chr15:21710191-21710021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):157, 92

               
               
               Conread position:11-182
               
               
               Cow position:chr15:8353960-8354128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr15:17621402-17621235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):67, 82

               
               
               Conread position:11-182
               
               
               Cow position:chr15:26851305-26851139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):149, 42

               
               
               Conread position:11-182
               
               
               Cow position:chr15:33643010-33643177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):126, 44

               
               
               Conread position:11-182
               
               
               Cow position:chr15:44436676-44436838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr15:47844171-47844006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr15:51822069-51822240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr15:45507-45328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):120, 16

               
               
               Conread position:11-183
               
               
               Cow position:chr15:12785346-12785516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):106, 138

               
               
               Conread position:11-183
               
               
               Cow position:chr15:14474259-14474431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr15:22531592-22531751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr15:28924839-28924667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):54, 41

               
               
               Conread position:11-183
               
               
               Cow position:chr15:31857508-31857679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr15:44658285-44658447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr15:49491569-49491732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr15:1297663-1297828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr15:5235072-5234912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr15:19186699-19186529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):46, 123

               
               
               Conread position:11-184
               
               
               Cow position:chr15:21893699-21893867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr15:21941929-21941757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr15:22444068-22443899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):145, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr15:39286492-39286320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:140
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:11-185
               
               
               Cow position:chr15:21583008-21582834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-188
               
               
               Cow position:chr15:2968253-2968429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):38, 55

               
               
               Conread position:11-188
               
               
               Cow position:chr15:8679840-8679664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):169, 0

               
               
               Conread position:11-189
               
               
               Cow position:chr15:12913580-12913404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):162, 57

               
               
               Conread position:11-191
               
               
               Cow position:chr15:16112313-16112496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:11-191
               
               
               Cow position:chr15:17196064-17196244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-191
               
               
               Cow position:chr15:34273717-34273897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-200
               
               
               Cow position:chr15:45160390-45160202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:11-204
               
               
               Cow position:chr15:26617854-26618048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):67, 161

               
               
               Conread position:11-207
               
               
               Cow position:chr15:25877358-25877553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):172, 0

               
               
               Conread position:12-134
               
               
               Cow position:chr15:32300294-32300416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-148
               
               
               Cow position:chr15:848564-848696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:12-148
               
               
               Cow position:chr15:5522867-5523010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:12-156
               
               
               Cow position:chr15:34139908-34140042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:12-161
               
               
               Cow position:chr15:8715265-8715116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-168
               
               
               Cow position:chr15:41056292-41056131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-170
               
               
               Cow position:chr15:48052681-48052529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-173
               
               
               Cow position:chr15:13674267-13674111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:12-175
               
               
               Cow position:chr15:4500618-4500783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:12-175
               
               
               Cow position:chr15:16230149-16230302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:12-175
               
               
               Cow position:chr15:33382498-33382662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:12-175
               
               
               Cow position:chr15:33784907-33784739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):121, 50

               
               
               Conread position:12-175
               
               
               Cow position:chr15:44977733-44977896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-178
               
               
               Cow position:chr15:24453157-24452991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):86, 59

               
               
               Conread position:12-182
               
               
               Cow position:chr15:21903490-21903323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr15:5044554-5044388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr15:6227259-6227094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr15:21608803-21608632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):55, 82

               
               
               Conread position:12-183
               
               
               Cow position:chr15:24462442-24462615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr15:31137545-31137378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr15:53028282-53028451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr15:1804413-1804246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):119, 39

               
               
               Conread position:12-184
               
               
               Cow position:chr15:5726232-5726414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr15:11996108-11995938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr15:13701852-13701680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr15:16530851-16530679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr15:16667578-16667414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr15:31637215-31637390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr15:32324288-32324119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr15:39520077-39520257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:12-185
               
               
               Cow position:chr15:24797883-24797720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-191
               
               
               Cow position:chr15:4418482-4418304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:12-191
               
               
               Cow position:chr15:15154216-15154396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):56, 89

               
               
               Conread position:12-191
               
               
               Cow position:chr15:38820622-38820791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):166, 41

               
               
               Conread position:12-210
               
               
               Cow position:chr15:28099031-28099225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:13-155
               
               
               Cow position:chr15:24982258-24982119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):32, 51

               
               
               Conread position:13-171
               
               
               Cow position:chr15:38196155-38196001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):146, 9

               
               
               Conread position:13-182
               
               
               Cow position:chr15:34223786-34223953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:13-183
               
               
               Cow position:chr15:38862014-38862181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):62, 137

               
               
               Conread position:13-183
               
               
               Cow position:chr15:46364690-46364860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):46, 66

               
               
               Conread position:13-184
               
               
               Cow position:chr15:41528050-41527887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:13-191
               
               
               Cow position:chr15:1083452-1083280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:14-170
               
               
               Cow position:chr15:48351050-48351199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):5, 42

               
               
               Conread position:14-181
               
               
               Cow position:chr15:11559432-11559269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:14-181
               
               
               Cow position:chr15:32226944-32226786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:14-183
               
               
               Cow position:chr15:18073638-18073807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-183
               
               
               Cow position:chr15:29793282-29793105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:14-184
               
               
               Cow position:chr15:17650733-17650572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):17, 38

               
               
               Conread position:14-184
               
               
               Cow position:chr15:36388218-36388380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:14-184
               
               
               Cow position:chr15:39405664-39405832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:14-191
               
               
               Cow position:chr15:13432404-13432581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):41, 59

               
               
               Conread position:15-181
               
               
               Cow position:chr15:35112952-35112800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:18-154
               
               
               Cow position:chr15:7026382-7026246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:18-170
               
               
               Cow position:chr15:5964187-5964031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):32, 131

               
               
               Conread position:18-184
               
               
               Cow position:chr15:608069-608235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:18-184
               
               
               Cow position:chr15:12203472-12203638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:18-184
               
               
               Cow position:chr15:36793571-36793405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:18-184
               
               
               Cow position:chr15:50265562-50265396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:18-185
               
               
               Cow position:chr15:32241901-32242068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:18-191
               
               
               Cow position:chr15:50341039-50341208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):30, 136

               
               
               Conread position:19-140
               
               
               Cow position:chr15:12199442-12199567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:19-179
               
               
               Cow position:chr15:25788309-25788468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):158, 36

               
               
               Conread position:19-183
               
               
               Cow position:chr15:10512342-10512184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:19-184
               
               
               Cow position:chr15:25386365-25386534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):96, 45

               
               
               Conread position:19-184
               
               
               Cow position:chr15:51794012-51794181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):31, 154

               
               
               Conread position:19-191
               
               
               Cow position:chr15:20487283-20487107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:19-212
               
               
               Cow position:chr15:3591323-3591507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):67, 40

               
               
               Conread position:20-148
               
               
               Cow position:chr15:10073881-10074015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:20-161
               
               
               Cow position:chr15:45574704-45574570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:20-168
               
               
               Cow position:chr15:44671415-44671266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):26, 85

               
               
               Conread position:20-183
               
               
               Cow position:chr15:9979028-9979188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:21-149
               
               
               Cow position:chr15:40562526-40562400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:103
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:21-184
               
               
               Cow position:chr15:9106970-9107123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:21-184
               
               
               Cow position:chr15:10608385-10608217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):48, 84

               
               
               Conread position:22-184
               
               
               Cow position:chr15:21420873-21421026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):150, 22

               
               
               Conread position:25-154
               
               
               Cow position:chr15:18449928-18450057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:27-179
               
               
               Cow position:chr15:14576264-14576412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:27-180
               
               
               Cow position:chr15:39621266-39621423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:27-182
               
               
               Cow position:chr15:244714-244868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):53, 28

               
               
               Conread position:29-184
               
               
               Cow position:chr15:915905-915754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:29-184
               
               
               Cow position:chr15:14176566-14176410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:37-153
               
               
               Cow position:chr15:34145309-34145197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:100
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:37-191
               
               
               Cow position:chr15:27900568-27900415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:38-184
               
               
               Cow position:chr15:6129020-6128877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):134, 58

               
               
               Conread position:39-183
               
               
               Cow position:chr15:44853187-44853332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:39-190
               
               
               Cow position:chr15:8549538-8549389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:41-157
               
               
               Cow position:chr15:23927936-23927820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:41-184
               
               
               Cow position:chr15:26919326-26919186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:42-183
               
               
               Cow position:chr15:26573327-26573467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:44-183
               
               
               Cow position:chr15:51375240-51375100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:46-179
               
               
               Cow position:chr15:14281504-14281633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:46-184
               
               
               Cow position:chr15:9781421-9781556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):21, 15

               
               
               Conread position:47-168
               
               
               Cow position:chr15:16911708-16911589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):101, 16

               
               
               Conread position:47-176
               
               
               Cow position:chr15:29330958-29331087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:47-184
               
               
               Cow position:chr15:13554304-13554442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:48-171
               
               
               Cow position:chr15:33976742-33976619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:96
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-175
               
               
               Cow position:chr15:39316889-39316762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-180
               
               
               Cow position:chr15:5535407-5535275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-183
               
               
               Cow position:chr15:12357570-12357705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr15:12870911-12870775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr15:22871567-22871698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr15:35945482-35945618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):15, 50

               
               
               Conread position:48-201
               
               
               Cow position:chr15:44280055-44280207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):145, 0

               
               
               Conread position:49-176
               
               
               Cow position:chr15:6046924-6046797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:96
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:49-184
               
               
               Cow position:chr15:14261303-14261170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:49-184
               
               
               Cow position:chr15:48590288-48590156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):22, 103

               
               
               Conread position:50-181
               
               
               Cow position:chr15:3690306-3690436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:104
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:51-183
               
               
               Cow position:chr15:17664294-17664156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):52, 26

               
               
               Conread position:51-184
               
               
               Cow position:chr15:35441122-35440993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:56-167
               
               
               Cow position:chr15:31024954-31025065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:89
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr15:18776790-18776662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr15:32977886-32977757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:56-191
               
               
               Cow position:chr15:6427669-6427534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):113, 20

               
               
               Conread position:56-201
               
               
               Cow position:chr15:50660584-50660729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):64, 11

               
               
               Conread position:58-179
               
               
               Cow position:chr15:42190409-42190529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:60-177
               
               
               Cow position:chr15:12332440-12332556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:92
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:60-184
               
               
               Cow position:chr15:17162160-17162284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-161
               
               
               Cow position:chr15:35205183-35205087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:87
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:64-183
               
               
               Cow position:chr15:9497531-9497412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:97
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-184
               
               
               Cow position:chr15:36458233-36458113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:65-184
               
               
               Cow position:chr15:20488117-20487997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:66-183
               
               
               Cow position:chr15:40368261-40368378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:93
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:66-184
               
               
               Cow position:chr15:41000098-40999982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:67-184
               
               
               Cow position:chr15:24629393-24629276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:98
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:69-183
               
               
               Cow position:chr15:29541852-29541965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:70-184
               
               
               Cow position:chr15:23719508-23719394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:90
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:72-191
               
               
               Cow position:chr15:37205025-37205144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:92
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:73-191
               
               
               Cow position:chr15:20422800-20422686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:96
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:74-205
               
               
               Cow position:chr15:43599168-43599297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:75-191
               
               
               Cow position:chr15:50322574-50322690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:80-184
               
               
               Cow position:chr15:47843266-47843162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-182
               
               
               Cow position:chr16:34753773-34753957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):63, 7

               
               
               Conread position:1-184
               
               
               Cow position:chr16:8673427-8673608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):55, 84

               
               
               Conread position:1-185
               
               
               Cow position:chr16:53614280-53614096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):12, 92

               
               
               Conread position:2-191
               
               
               Cow position:chr16:10592624-10592427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):11, 153

               
               
               Conread position:3-130
               
               
               Cow position:chr16:31559083-31558956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-140
               
               
               Cow position:chr16:42992398-42992261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-144
               
               
               Cow position:chr16:46184339-46184198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-150
               
               
               Cow position:chr16:18669140-18668995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:3-162
               
               
               Cow position:chr16:14343761-14343602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-167
               
               
               Cow position:chr16:50078578-50078742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):158, 73

               
               
               Conread position:3-173
               
               
               Cow position:chr16:45278717-45278548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:3-177
               
               
               Cow position:chr16:29096096-29095929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:3-178
               
               
               Cow position:chr16:15927417-15927242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-179
               
               
               Cow position:chr16:18243916-18243746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:3-181
               
               
               Cow position:chr16:6016205-6016376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:3-181
               
               
               Cow position:chr16:32512124-32512302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-181
               
               
               Cow position:chr16:40446447-40446266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):69, 148

               
               
               Conread position:3-181
               
               
               Cow position:chr16:49336399-49336230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:3-182
               
               
               Cow position:chr16:30290490-30290311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-182
               
               
               Cow position:chr16:42038244-42038064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):173, 0

               
               
               Conread position:3-182
               
               
               Cow position:chr16:55613322-55613501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr16:4910343-4910523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr16:8090350-8090530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:143
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr16:9497081-9497266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr16:9615036-9615215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr16:9729377-9729197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr16:10039665-10039842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr16:14841543-14841361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr16:18572876-18573052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr16:21451029-21450849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr16:22850507-22850331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):154, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr16:25369568-25369388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr16:26676510-26676684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr16:30369529-30369349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr16:31269322-31269142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr16:40377633-40377813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr16:43866667-43866852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):157, 73

               
               
               Conread position:3-183
               
               
               Cow position:chr16:46548083-46548267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:3-184
               
               
               Cow position:chr16:19047254-19047433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:3-184
               
               
               Cow position:chr16:50442731-50442549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:3-185
               
               
               Cow position:chr16:7812872-7812690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:148
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-191
               
               
               Cow position:chr16:4856920-4857105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):147, 0

               
               
               Conread position:3-191
               
               
               Cow position:chr16:52357357-52357545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:4-179
               
               
               Cow position:chr16:33267899-33267719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:5-168
               
               
               Cow position:chr16:53451881-53451724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:5-177
               
               
               Cow position:chr16:15949331-15949500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:5-183
               
               
               Cow position:chr16:5360090-5360268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:5-183
               
               
               Cow position:chr16:12274248-12274072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:5-183
               
               
               Cow position:chr16:12379165-12379350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:5-183
               
               
               Cow position:chr16:16552743-16552563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:5-184
               
               
               Cow position:chr16:32301825-32302006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:6-148
               
               
               Cow position:chr16:41696183-41696045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:7-181
               
               
               Cow position:chr16:7441925-7442096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):161, 89

               
               
               Conread position:7-184
               
               
               Cow position:chr16:9959004-9958830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):161, 48

               
               
               Conread position:7-191
               
               
               Cow position:chr16:13483401-13483581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:8-125
               
               
               Cow position:chr16:51216871-51216986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:8-130
               
               
               Cow position:chr16:4911277-4911391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-135
               
               
               Cow position:chr16:8083753-8083880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):57, 36

               
               
               Conread position:8-139
               
               
               Cow position:chr16:51393213-51393345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):52, 82

               
               
               Conread position:8-148
               
               
               Cow position:chr16:23187727-23187581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr16:23515592-23515729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr16:29311702-29311560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:8-149
               
               
               Cow position:chr16:8205905-8206048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):48, 33

               
               
               Conread position:8-149
               
               
               Cow position:chr16:31011502-31011363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:8-150
               
               
               Cow position:chr16:27759426-27759571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:8-154
               
               
               Cow position:chr16:8953500-8953652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):46, 122

               
               
               Conread position:8-154
               
               
               Cow position:chr16:12976647-12976499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):9, 85

               
               
               Conread position:8-154
               
               
               Cow position:chr16:51598439-51598582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):27, 46

               
               
               Conread position:8-156
               
               
               Cow position:chr16:11654218-11654071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:8-156
               
               
               Cow position:chr16:29060558-29060406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:8-156
               
               
               Cow position:chr16:52325422-52325570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-157
               
               
               Cow position:chr16:33073711-33073853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:8-160
               
               
               Cow position:chr16:12457909-12458059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:8-161
               
               
               Cow position:chr16:12281010-12281172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:8-161
               
               
               Cow position:chr16:13791781-13791627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):51, 67

               
               
               Conread position:8-161
               
               
               Cow position:chr16:18429762-18429611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-161
               
               
               Cow position:chr16:20614670-20614522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):64, 81

               
               
               Conread position:8-164
               
               
               Cow position:chr16:3048978-3049133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:8-164
               
               
               Cow position:chr16:4277378-4277533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):56, 46

               
               
               Conread position:8-164
               
               
               Cow position:chr16:25419077-25419233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-164
               
               
               Cow position:chr16:33629594-33629441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):134, 19

               
               
               Conread position:8-167
               
               
               Cow position:chr16:3938838-3938997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):134, 47

               
               
               Conread position:8-168
               
               
               Cow position:chr16:8738241-8738082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:8-168
               
               
               Cow position:chr16:31117444-31117598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:8-168
               
               
               Cow position:chr16:43276204-43276035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:8-170
               
               
               Cow position:chr16:33302359-33302199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:8-170
               
               
               Cow position:chr16:51143973-51143814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):67, 47

               
               
               Conread position:8-171
               
               
               Cow position:chr16:8493815-8493977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):52, 61

               
               
               Conread position:8-171
               
               
               Cow position:chr16:38581179-38581016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-171
               
               
               Cow position:chr16:55784572-55784738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-172
               
               
               Cow position:chr16:9242382-9242214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:8-173
               
               
               Cow position:chr16:12251198-12251034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):60, 134

               
               
               Conread position:8-174
               
               
               Cow position:chr16:24672686-24672852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):71, 90

               
               
               Conread position:8-175
               
               
               Cow position:chr16:22323636-22323800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:8-176
               
               
               Cow position:chr16:28980006-28979841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):79, 47

               
               
               Conread position:8-176
               
               
               Cow position:chr16:44144565-44144397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):51, 70

               
               
               Conread position:8-177
               
               
               Cow position:chr16:29766494-29766334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):105, 39

               
               
               Conread position:8-178
               
               
               Cow position:chr16:13996019-13996189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:139
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr16:18757660-18757833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):67, 60

               
               
               Conread position:8-179
               
               
               Cow position:chr16:31149549-31149384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr16:42253231-42253393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):151, 47

               
               
               Conread position:8-180
               
               
               Cow position:chr16:35297576-35297413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:8-180
               
               
               Cow position:chr16:38355258-38355422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):11, 41

               
               
               Conread position:8-181
               
               
               Cow position:chr16:820425-820256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):87, 47

               
               
               Conread position:8-181
               
               
               Cow position:chr16:10011674-10011845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):62, 143

               
               
               Conread position:8-181
               
               
               Cow position:chr16:12091478-12091659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr16:22776245-22776418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr16:33236109-33236279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr16:40029711-40029880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr16:44394461-44394285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):16, 171

               
               
               Conread position:8-181
               
               
               Cow position:chr16:48145232-48145397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr16:48917649-48917477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr16:50409422-50409251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr16:56595213-56595385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):158, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr16:238440-238271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr16:7151996-7152168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr16:7723873-7723704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr16:9513466-9513297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr16:11134811-11134978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr16:11584233-11584402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr16:12010272-12010098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr16:12324628-12324458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr16:13689837-13689669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr16:14685217-14685390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):111, 45

               
               
               Conread position:8-182
               
               
               Cow position:chr16:16597733-16597560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr16:17474930-17474768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr16:21442434-21442604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):64, 98

               
               
               Conread position:8-182
               
               
               Cow position:chr16:22841873-22842054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):50, 95

               
               
               Conread position:8-182
               
               
               Cow position:chr16:23681535-23681370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr16:28199202-28199032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr16:29038091-29037922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr16:31561928-31561758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr16:33646189-33646018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr16:42977648-42977468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):55, 84

               
               
               Conread position:8-182
               
               
               Cow position:chr16:47820748-47820571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):29, 146

               
               
               Conread position:8-182
               
               
               Cow position:chr16:50289325-50289155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr16:51501102-51500935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr16:52274961-52275126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr16:54579339-54579170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr16:591630-591809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr16:2223220-2223395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr16:4507865-4507698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr16:7011246-7011071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr16:7583572-7583399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr16:8065711-8065886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr16:9730030-9730204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr16:10249642-10249817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr16:13578681-13578859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr16:16232233-16232056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr16:18047978-18048153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr16:20205638-20205463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr16:22984924-22984758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr16:27051222-27051047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr16:28444313-28444488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr16:29712590-29712421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr16:31241118-31241288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr16:31575321-31575146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr16:32142266-32142092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr16:35074739-35074564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):150, 111

               
               
               Conread position:8-183
               
               
               Cow position:chr16:39682925-39683099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr16:44138316-44138490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):146, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr16:44743956-44744131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr16:46655456-46655286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):59, 46

               
               
               Conread position:8-183
               
               
               Cow position:chr16:47303938-47304123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr16:47633048-47632865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):51, 97

               
               
               Conread position:8-183
               
               
               Cow position:chr16:48567702-48567535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):66, 91

               
               
               Conread position:8-183
               
               
               Cow position:chr16:51610651-51610832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr16:56082188-56082363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:140
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr16:5382360-5382179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr16:7665814-7665638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:146
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr16:7928208-7928384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr16:10032815-10032640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr16:11916033-11916214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):100, 62

               
               
               Conread position:8-184
               
               
               Cow position:chr16:12939791-12939622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr16:13252145-13252305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr16:13611264-13611453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr16:13712765-13712932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr16:17143112-17142935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr16:18953756-18953585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):94, 45

               
               
               Conread position:8-184
               
               
               Cow position:chr16:19670184-19670352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr16:22773147-22772980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr16:23811297-23811125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr16:23955654-23955831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):62, 39

               
               
               Conread position:8-184
               
               
               Cow position:chr16:29655488-29655326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr16:30211623-30211455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr16:30908775-30908946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):70, 47

               
               
               Conread position:8-184
               
               
               Cow position:chr16:31565567-31565743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr16:33632504-33632674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr16:39385663-39385492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr16:42444334-42444157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):61, 73

               
               
               Conread position:8-184
               
               
               Cow position:chr16:45122216-45122036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr16:45193634-45193808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:143
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr16:46552967-46552795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr16:47180991-47181165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):62, 125

               
               
               Conread position:8-184
               
               
               Cow position:chr16:47852424-47852592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr16:49125347-49125528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):43, 12

               
               
               Conread position:8-184
               
               
               Cow position:chr16:49860408-49860233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):149, 45

               
               
               Conread position:8-184
               
               
               Cow position:chr16:50286687-50286514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr16:56796480-56796665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):44, 149

               
               
               Conread position:8-185
               
               
               Cow position:chr16:11359321-11359151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-186
               
               
               Cow position:chr16:23564312-23564131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:8-187
               
               
               Cow position:chr16:26030702-26030886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):99, 61

               
               
               Conread position:8-191
               
               
               Cow position:chr16:6262675-6262860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):50, 88

               
               
               Conread position:8-191
               
               
               Cow position:chr16:29026390-29026202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):46, 150

               
               
               Conread position:8-191
               
               
               Cow position:chr16:30174347-30174534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):61, 156

               
               
               Conread position:8-191
               
               
               Cow position:chr16:33290561-33290378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):181, 167

               
               
               Conread position:8-191
               
               
               Cow position:chr16:38663534-38663716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:145
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr16:44210385-44210564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):83, 45

               
               
               Conread position:8-196
               
               
               Cow position:chr16:45826547-45826731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):121, 43

               
               
               Conread position:8-197
               
               
               Cow position:chr16:27326948-27327133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):143, 156

               
               
               Conread position:8-199
               
               
               Cow position:chr16:10122324-10122516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-201
               
               
               Cow position:chr16:14754154-14754342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):137, 45

               
               
               Conread position:8-203
               
               
               Cow position:chr16:4321759-4321572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):177, 11

               
               
               Conread position:8-203
               
               
               Cow position:chr16:11083170-11082981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-203
               
               
               Cow position:chr16:34998448-34998637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):70, 140

               
               
               Conread position:8-215
               
               
               Cow position:chr16:10033039-10032837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):192, 141

               
               
               Conread position:8-215
               
               
               Cow position:chr16:23472916-23472723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:9-135
               
               
               Cow position:chr16:28001054-28001183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:9-183
               
               
               Cow position:chr16:32426549-32426726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):163, 69

               
               
               Conread position:9-183
               
               
               Cow position:chr16:56173408-56173582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:9-184
               
               
               Cow position:chr16:34204894-34205063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:9-184
               
               
               Cow position:chr16:54734422-54734240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):44, 108

               
               
               Conread position:9-192
               
               
               Cow position:chr16:17135909-17135720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):39, 7

               
               
               Conread position:10-181
               
               
               Cow position:chr16:36286515-36286678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:10-182
               
               
               Cow position:chr16:45813526-45813693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:10-184
               
               
               Cow position:chr16:7619002-7619176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):58, 85

               
               
               Conread position:10-184
               
               
               Cow position:chr16:11957406-11957577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:10-191
               
               
               Cow position:chr16:39695308-39695489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-115
               
               
               Cow position:chr16:30368654-30368756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:86
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:11-140
               
               
               Cow position:chr16:8231193-8231318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:11-145
               
               
               Cow position:chr16:41654693-41654566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):78, 42

               
               
               Conread position:11-157
               
               
               Cow position:chr16:49733974-49734117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-158
               
               
               Cow position:chr16:30646680-30646539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-159
               
               
               Cow position:chr16:23089012-23088871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:11-163
               
               
               Cow position:chr16:17617189-17617341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-168
               
               
               Cow position:chr16:9097197-9097040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-168
               
               
               Cow position:chr16:19282178-19282021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):147, 28

               
               
               Conread position:11-172
               
               
               Cow position:chr16:16025615-16025449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:11-173
               
               
               Cow position:chr16:50569431-50569276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:11-174
               
               
               Cow position:chr16:8288780-8288936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-176
               
               
               Cow position:chr16:8809926-8810085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-176
               
               
               Cow position:chr16:24674501-24674669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):52, 72

               
               
               Conread position:11-178
               
               
               Cow position:chr16:12819170-12819002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:11-179
               
               
               Cow position:chr16:14568320-14568483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-179
               
               
               Cow position:chr16:29557453-29557624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):85, 50

               
               
               Conread position:11-179
               
               
               Cow position:chr16:33704973-33704813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):67, 38

               
               
               Conread position:11-180
               
               
               Cow position:chr16:34256864-34257033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-181
               
               
               Cow position:chr16:56265674-56265504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr16:13306700-13306869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr16:18206126-18205962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:143
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr16:25170564-25170396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr16:31484495-31484659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):89, 40

               
               
               Conread position:11-182
               
               
               Cow position:chr16:38243489-38243658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):146, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr16:39029926-39030096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr16:41578397-41578229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr16:4971850-4972025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):53, 42

               
               
               Conread position:11-183
               
               
               Cow position:chr16:9279933-9280115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr16:11389399-11389571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr16:15407385-15407555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr16:17746016-17745838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr16:23822858-23823025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr16:30186815-30186647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr16:33405318-33405492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr16:38905053-38905232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr16:42539409-42539586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):48, 145

               
               
               Conread position:11-183
               
               
               Cow position:chr16:45348561-45348383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr16:48613307-48613473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):100, 51

               
               
               Conread position:11-183
               
               
               Cow position:chr16:51795433-51795601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):105, 84

               
               
               Conread position:11-184
               
               
               Cow position:chr16:424638-424812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):56, 93

               
               
               Conread position:11-184
               
               
               Cow position:chr16:3246035-3246204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr16:9830620-9830446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):57, 106

               
               
               Conread position:11-184
               
               
               Cow position:chr16:9973311-9973498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr16:12220857-12220682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:147
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr16:24202690-24202864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):31, 142

               
               
               Conread position:11-184
               
               
               Cow position:chr16:39165404-39165241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr16:52389802-52389621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):40, 126

               
               
               Conread position:11-184
               
               
               Cow position:chr16:54664633-54664799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):107, 39

               
               
               Conread position:11-185
               
               
               Cow position:chr16:56670739-56670919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:147
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:11-187
               
               
               Cow position:chr16:48956969-48956795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):69, 45

               
               
               Conread position:11-191
               
               
               Cow position:chr16:35758372-35758196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:11-199
               
               
               Cow position:chr16:3032543-3032730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):177, 0

               
               
               Conread position:11-203
               
               
               Cow position:chr16:9600587-9600401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-210
               
               
               Cow position:chr16:56912514-56912715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):64, 39

               
               
               Conread position:11-212
               
               
               Cow position:chr16:14210611-14210799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:12-142
               
               
               Cow position:chr16:38543947-38543812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:12-148
               
               
               Cow position:chr16:43323030-43322886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:12-154
               
               
               Cow position:chr16:48095599-48095734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:12-161
               
               
               Cow position:chr16:28233132-28233281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-164
               
               
               Cow position:chr16:9986886-9987047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:12-175
               
               
               Cow position:chr16:6802512-6802678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):48, 150

               
               
               Conread position:12-175
               
               
               Cow position:chr16:17180332-17180169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):107, 64

               
               
               Conread position:12-175
               
               
               Cow position:chr16:51112711-51112870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:12-176
               
               
               Cow position:chr16:33198260-33198428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):43, 150

               
               
               Conread position:12-178
               
               
               Cow position:chr16:8469850-8469684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-180
               
               
               Cow position:chr16:12077308-12077479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):38, 154

               
               
               Conread position:12-181
               
               
               Cow position:chr16:8958885-8959052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr16:5243260-5243090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):48, 41

               
               
               Conread position:12-183
               
               
               Cow position:chr16:1548711-1548876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr16:15714282-15714111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr16:20476703-20476537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):94, 39

               
               
               Conread position:12-183
               
               
               Cow position:chr16:24617242-24617072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):53, 27

               
               
               Conread position:12-183
               
               
               Cow position:chr16:30662098-30662267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):62, 15

               
               
               Conread position:12-183
               
               
               Cow position:chr16:42733848-42734009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr16:9836611-9836772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):127, 38

               
               
               Conread position:12-184
               
               
               Cow position:chr16:15905073-15905249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr16:15960109-15960289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr16:42432947-42433110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr16:44429050-44428884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:12-185
               
               
               Cow position:chr16:12102707-12102540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):56, 27

               
               
               Conread position:12-185
               
               
               Cow position:chr16:43758473-43758646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-191
               
               
               Cow position:chr16:6609339-6609510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:12-191
               
               
               Cow position:chr16:13698688-13698509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-191
               
               
               Cow position:chr16:14242538-14242365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-192
               
               
               Cow position:chr16:42241953-42242124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:12-195
               
               
               Cow position:chr16:33299567-33299384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-200
               
               
               Cow position:chr16:19478595-19478782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):68, 50

               
               
               Conread position:13-139
               
               
               Cow position:chr16:21974787-21974918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:108
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:13-173
               
               
               Cow position:chr16:11019344-11019504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):154, 108

               
               
               Conread position:13-180
               
               
               Cow position:chr16:15761982-15762151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:13-191
               
               
               Cow position:chr16:15023460-15023637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:13-218
               
               
               Cow position:chr16:12507090-12507292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):51, 65

               
               
               Conread position:14-148
               
               
               Cow position:chr16:30580949-30581082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):89, 70

               
               
               Conread position:14-154
               
               
               Cow position:chr16:23053996-23053854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:14-156
               
               
               Cow position:chr16:16968535-16968673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:14-167
               
               
               Cow position:chr16:42107800-42107646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:14-173
               
               
               Cow position:chr16:20743146-20743302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:14-179
               
               
               Cow position:chr16:15203188-15203363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:14-180
               
               
               Cow position:chr16:47662899-47662737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:14-182
               
               
               Cow position:chr16:4059534-4059359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):35, 95

               
               
               Conread position:14-182
               
               
               Cow position:chr16:11390104-11390282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:14-182
               
               
               Cow position:chr16:30305647-30305809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):76, 49

               
               
               Conread position:14-182
               
               
               Cow position:chr16:31348589-31348761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):46, 124

               
               
               Conread position:14-183
               
               
               Cow position:chr16:55683468-55683302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:14-184
               
               
               Cow position:chr16:7496420-7496257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:14-184
               
               
               Cow position:chr16:15370851-15370685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):162, 41

               
               
               Conread position:14-184
               
               
               Cow position:chr16:41530139-41530299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:14-184
               
               
               Cow position:chr16:43308392-43308559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:14-184
               
               
               Cow position:chr16:45047016-45046838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):50, 138

               
               
               Conread position:14-184
               
               
               Cow position:chr16:53508820-53508983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:14-184
               
               
               Cow position:chr16:56665736-56665576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:14-191
               
               
               Cow position:chr16:258115-258288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:14-201
               
               
               Cow position:chr16:48385245-48385414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:15-183
               
               
               Cow position:chr16:43185466-43185299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:15-184
               
               
               Cow position:chr16:9578326-9578490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:18-180
               
               
               Cow position:chr16:12523222-12523061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:18-183
               
               
               Cow position:chr16:7429540-7429381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:18-184
               
               
               Cow position:chr16:37452452-37452613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):11, 38

               
               
               Conread position:18-185
               
               
               Cow position:chr16:42201069-42200899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):76, 59

               
               
               Conread position:19-149
               
               
               Cow position:chr16:16163541-16163670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):18, 50

               
               
               Conread position:19-149
               
               
               Cow position:chr16:25657271-25657138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):45, 19

               
               
               Conread position:19-149
               
               
               Cow position:chr16:31626120-31626248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:19-164
               
               
               Cow position:chr16:21657325-21657184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:19-180
               
               
               Cow position:chr16:56615339-56615498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:19-182
               
               
               Cow position:chr16:18156330-18156157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):37, 151

               
               
               Conread position:19-183
               
               
               Cow position:chr16:29159280-29159126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-184
               
               
               Cow position:chr16:8522224-8522384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:19-184
               
               
               Cow position:chr16:19053719-19053882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:19-184
               
               
               Cow position:chr16:22738440-22738281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:19-184
               
               
               Cow position:chr16:43105339-43105514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):51, 125

               
               
               Conread position:19-184
               
               
               Cow position:chr16:45943599-45943773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:19-191
               
               
               Cow position:chr16:56565760-56565589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):132, 45

               
               
               Conread position:19-192
               
               
               Cow position:chr16:15726188-15726365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):51, 144

               
               
               Conread position:19-206
               
               
               Cow position:chr16:5896583-5896402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:20-148
               
               
               Cow position:chr16:21370023-21370153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:20-155
               
               
               Cow position:chr16:34506511-34506381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:20-159
               
               
               Cow position:chr16:4192269-4192408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:20-159
               
               
               Cow position:chr16:49215843-49215975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:20-182
               
               
               Cow position:chr16:38743185-38743031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:20-184
               
               
               Cow position:chr16:50282270-50282432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):128, 25

               
               
               Conread position:20-191
               
               
               Cow position:chr16:9596529-9596364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:21-164
               
               
               Cow position:chr16:22927683-22927543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:21-171
               
               
               Cow position:chr16:22327680-22327524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:21-173
               
               
               Cow position:chr16:15953652-15953806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):27, 21

               
               
               Conread position:21-175
               
               
               Cow position:chr16:45610149-45609995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:22-186
               
               
               Cow position:chr16:45678138-45677979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):153, 42

               
               
               Conread position:25-150
               
               
               Cow position:chr16:7910645-7910768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:101
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:27-180
               
               
               Cow position:chr16:9560337-9560490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:27-183
               
               
               Cow position:chr16:16945550-16945711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):34, 148

               
               
               Conread position:27-183
               
               
               Cow position:chr16:49229615-49229766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:27-185
               
               
               Cow position:chr16:48086718-48086868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:28-184
               
               
               Cow position:chr16:7702678-7702528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):37, 110

               
               
               Conread position:29-156
               
               
               Cow position:chr16:12836073-12836200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:96
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:29-183
               
               
               Cow position:chr16:13969207-13969369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:29-184
               
               
               Cow position:chr16:25380340-25380495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):142, 25

               
               
               Conread position:29-242
               
               
               Cow position:chr16:34412958-34412755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:30-179
               
               
               Cow position:chr16:8448500-8448644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:31-178
               
               
               Cow position:chr16:45299765-45299921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:34-176
               
               
               Cow position:chr16:9985246-9985384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:34-195
               
               
               Cow position:chr16:6213745-6213590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:35-175
               
               
               Cow position:chr16:13531953-13531819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:37-183
               
               
               Cow position:chr16:45457112-45456964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:38-184
               
               
               Cow position:chr16:14974398-14974539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:43-182
               
               
               Cow position:chr16:45785877-45785740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:44-183
               
               
               Cow position:chr16:6232399-6232258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:44-184
               
               
               Cow position:chr16:21317454-21317592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:44-184
               
               
               Cow position:chr16:49169240-49169380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:45-184
               
               
               Cow position:chr16:24403290-24403427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:45-184
               
               
               Cow position:chr16:55945001-55945139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:45-191
               
               
               Cow position:chr16:17627069-17626923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):78, 45

               
               
               Conread position:45-201
               
               
               Cow position:chr16:6319343-6319187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):123, 142

               
               
               Conread position:46-183
               
               
               Cow position:chr16:28922912-28922775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:47-156
               
               
               Cow position:chr16:52803816-52803926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:47-176
               
               
               Cow position:chr16:54091256-54091386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:48-156
               
               
               Cow position:chr16:9950802-9950908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:88
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:48-167
               
               
               Cow position:chr16:11922891-11923010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):45, 24

               
               
               Conread position:48-167
               
               
               Cow position:chr16:27032713-27032594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:94
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-176
               
               
               Cow position:chr16:52705937-52706067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:48-179
               
               
               Cow position:chr16:42633607-42633738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-181
               
               
               Cow position:chr16:6310560-6310699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:48-182
               
               
               Cow position:chr16:6378989-6379121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:48-183
               
               
               Cow position:chr16:16945160-16945296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):94, 124

               
               
               Conread position:48-183
               
               
               Cow position:chr16:52365076-52364941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):40, 79

               
               
               Conread position:48-184
               
               
               Cow position:chr16:20025577-20025445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr16:47855075-47854941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:48-186
               
               
               Cow position:chr16:53086203-53086342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:48-191
               
               
               Cow position:chr16:4736450-4736590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:48-191
               
               
               Cow position:chr16:9500661-9500516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:48-191
               
               
               Cow position:chr16:12097778-12097635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-215
               
               
               Cow position:chr16:14046394-14046556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):144, 75

               
               
               Conread position:49-189
               
               
               Cow position:chr16:52133382-52133521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:49-193
               
               
               Cow position:chr16:48448857-48448715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:49-201
               
               
               Cow position:chr16:43675010-43674858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):82, 122

               
               
               Conread position:49-208
               
               
               Cow position:chr16:20265427-20265588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:50-201
               
               
               Cow position:chr16:7550101-7549953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:51-181
               
               
               Cow position:chr16:815162-815033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):57, 39

               
               
               Conread position:51-184
               
               
               Cow position:chr16:33530543-33530410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:51-184
               
               
               Cow position:chr16:39202274-39202140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:52-185
               
               
               Cow position:chr16:22329294-22329161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:52-191
               
               
               Cow position:chr16:1415170-1415304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:55-150
               
               
               Cow position:chr16:48099590-48099495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:96
               
               
               Alignm identity:83
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:55-167
               
               
               Cow position:chr16:16280243-16280355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:55-178
               
               
               Cow position:chr16:19003402-19003526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:55-183
               
               
               Cow position:chr16:11102691-11102819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:55-184
               
               
               Cow position:chr16:15254627-15254752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:55-184
               
               
               Cow position:chr16:51382493-51382619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:56-170
               
               
               Cow position:chr16:7499179-7499065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-174
               
               
               Cow position:chr16:7611992-7611874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-183
               
               
               Cow position:chr16:29677505-29677632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr16:8273709-8273837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr16:12501032-12501159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr16:30036863-30036986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr16:30601550-30601422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr16:48545950-48545822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-185
               
               
               Cow position:chr16:14005990-14006117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:58-179
               
               
               Cow position:chr16:12634012-12633890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:58-184
               
               
               Cow position:chr16:22804471-22804597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:59-184
               
               
               Cow position:chr16:35188375-35188254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:64-174
               
               
               Cow position:chr16:4102710-4102820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-181
               
               
               Cow position:chr16:51697206-51697089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-182
               
               
               Cow position:chr16:30358942-30359060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-184
               
               
               Cow position:chr16:8018089-8017968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:96
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:64-185
               
               
               Cow position:chr16:8025734-8025855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-191
               
               
               Cow position:chr16:18353835-18353962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):13, 95

               
               
               Conread position:64-192
               
               
               Cow position:chr16:27723345-27723217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:65-182
               
               
               Cow position:chr16:13414546-13414663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:92
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:65-184
               
               
               Cow position:chr16:40745239-40745358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:66-184
               
               
               Cow position:chr16:8933309-8933424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:66-184
               
               
               Cow position:chr16:42340315-42340197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:67-179
               
               
               Cow position:chr16:30027991-30027879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:68-184
               
               
               Cow position:chr16:4399852-4399736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:68-185
               
               
               Cow position:chr16:46452626-46452743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:92
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:69-168
               
               
               Cow position:chr16:44568997-44568898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:84
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:71-184
               
               
               Cow position:chr16:26372837-26372948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:94
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:76-184
               
               
               Cow position:chr16:5725577-5725468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:88
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:79-176
               
               
               Cow position:chr16:11391011-11390914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:82
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-168
               
               
               Cow position:chr17:42780099-42780268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):58, 7

               
               
               Conread position:1-183
               
               
               Cow position:chr17:40312919-40312748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:2-182
               
               
               Cow position:chr17:16371478-16371299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):86, 35

               
               
               Conread position:2-184
               
               
               Cow position:chr17:31991160-31990974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):18, 107

               
               
               Conread position:3-126
               
               
               Cow position:chr17:952373-952250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-148
               
               
               Cow position:chr17:30977234-30977097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:3-155
               
               
               Cow position:chr17:21181673-21181521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-168
               
               
               Cow position:chr17:30359675-30359515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):153, 52

               
               
               Conread position:3-176
               
               
               Cow position:chr17:16438497-16438672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:3-176
               
               
               Cow position:chr17:25875614-25875444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:3-178
               
               
               Cow position:chr17:37552805-37552980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-180
               
               
               Cow position:chr17:11381506-11381682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:3-182
               
               
               Cow position:chr17:21075992-21075814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):133, 78

               
               
               Conread position:3-182
               
               
               Cow position:chr17:22056795-22056985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):44, 27

               
               
               Conread position:3-182
               
               
               Cow position:chr17:26836546-26836724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr17:10447132-10446951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr17:11618806-11618630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):148, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr17:22128142-22127964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr17:23063941-23063762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr17:24928697-24928517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr17:25584463-25584284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):154, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr17:32027228-32027411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr17:36432118-36431938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr17:36522825-36523005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr17:38615182-38615002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-184
               
               
               Cow position:chr17:5421900-5421719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-184
               
               
               Cow position:chr17:31754553-31754734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):54, 138

               
               
               Conread position:3-191
               
               
               Cow position:chr17:9935585-9935773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):65, 89

               
               
               Conread position:3-192
               
               
               Cow position:chr17:18146409-18146218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:3-200
               
               
               Cow position:chr17:34768234-34768432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:5-154
               
               
               Cow position:chr17:28529073-28528924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:5-173
               
               
               Cow position:chr17:9077996-9078169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:5-183
               
               
               Cow position:chr17:17772201-17772385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:5-191
               
               
               Cow position:chr17:950192-950009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):51, 14

               
               
               Conread position:7-111
               
               
               Cow position:chr17:20887237-20887133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:7-148
               
               
               Cow position:chr17:9770720-9770580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:7-180
               
               
               Cow position:chr17:24947550-24947378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:7-182
               
               
               Cow position:chr17:12959317-12959149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):12, 49

               
               
               Conread position:7-183
               
               
               Cow position:chr17:5898309-5898490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):60, 48

               
               
               Conread position:8-111
               
               
               Cow position:chr17:11920815-11920917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:86
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:8-127
               
               
               Cow position:chr17:22772908-22773029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:8-132
               
               
               Cow position:chr17:18673823-18673947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-138
               
               
               Cow position:chr17:17822301-17822177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-138
               
               
               Cow position:chr17:31736288-31736419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:8-139
               
               
               Cow position:chr17:7865039-7864910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-145
               
               
               Cow position:chr17:10630767-10630903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):50, 58

               
               
               Conread position:8-145
               
               
               Cow position:chr17:43970941-43971073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr17:9260397-9260535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr17:9854196-9854053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):45, 75

               
               
               Conread position:8-148
               
               
               Cow position:chr17:11362390-11362251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr17:21335337-21335486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr17:38736645-38736515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-149
               
               
               Cow position:chr17:5048147-5048006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-149
               
               
               Cow position:chr17:20855738-20855595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):62, 29

               
               
               Conread position:8-150
               
               
               Cow position:chr17:17265916-17266060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:8-153
               
               
               Cow position:chr17:6767044-6767189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-153
               
               
               Cow position:chr17:31480816-31480966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):54, 79

               
               
               Conread position:8-154
               
               
               Cow position:chr17:6936464-6936609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:8-155
               
               
               Cow position:chr17:7711650-7711507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-155
               
               
               Cow position:chr17:31037162-31037307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:8-156
               
               
               Cow position:chr17:18708403-18708542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:8-156
               
               
               Cow position:chr17:19544018-19544163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):126, 47

               
               
               Conread position:8-156
               
               
               Cow position:chr17:20836304-20836160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:8-158
               
               
               Cow position:chr17:3387933-3387784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:8-160
               
               
               Cow position:chr17:1562577-1562722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-160
               
               
               Cow position:chr17:21910317-21910467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:8-161
               
               
               Cow position:chr17:9900117-9899967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-161
               
               
               Cow position:chr17:26183561-26183408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-167
               
               
               Cow position:chr17:1081422-1081262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:8-171
               
               
               Cow position:chr17:30750262-30750096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:8-172
               
               
               Cow position:chr17:5761935-5762102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):47, 148

               
               
               Conread position:8-172
               
               
               Cow position:chr17:11920948-11921112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-172
               
               
               Cow position:chr17:19471559-19471718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-173
               
               
               Cow position:chr17:6761640-6761796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-173
               
               
               Cow position:chr17:20359330-20359164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:8-174
               
               
               Cow position:chr17:26789629-26789470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:8-176
               
               
               Cow position:chr17:10016491-10016328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-176
               
               
               Cow position:chr17:22051377-22051541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-176
               
               
               Cow position:chr17:24824463-24824291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):68, 54

               
               
               Conread position:8-176
               
               
               Cow position:chr17:25122034-25122195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:8-177
               
               
               Cow position:chr17:6787154-6786984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:139
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:8-177
               
               
               Cow position:chr17:17180259-17180091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:8-177
               
               
               Cow position:chr17:21466044-21466215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:8-178
               
               
               Cow position:chr17:11055953-11056114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):166, 65

               
               
               Conread position:8-179
               
               
               Cow position:chr17:14033427-14033596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr17:19899114-19898936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr17:32138202-32138378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:8-180
               
               
               Cow position:chr17:25342526-25342696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr17:15303759-15303932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):56, 70

               
               
               Conread position:8-181
               
               
               Cow position:chr17:26225242-26225071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr17:1114112-1113931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr17:5514971-5514803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr17:9965808-9965985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr17:10414707-10414541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr17:11912291-11912460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr17:15883889-15883714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr17:17035160-17034992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr17:17044121-17044289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr17:25118101-25117927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):65, 46

               
               
               Conread position:8-182
               
               
               Cow position:chr17:25473067-25473237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr17:25702818-25702642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):153, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr17:30728720-30728547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr17:32220668-32220843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):107, 75

               
               
               Conread position:8-182
               
               
               Cow position:chr17:32349277-32349114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr17:32418903-32419073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr17:36864837-36864673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr17:4786267-4786455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr17:4817744-4817570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr17:6329326-6329157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr17:7802958-7803133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr17:11397881-11397709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr17:12306186-12306357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):154, 48

               
               
               Conread position:8-183
               
               
               Cow position:chr17:13940104-13940280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr17:14024414-14024589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr17:18201975-18201799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr17:18775975-18776141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):83, 47

               
               
               Conread position:8-183
               
               
               Cow position:chr17:18818776-18818610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr17:20032694-20032870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr17:21599466-21599641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):62, 86

               
               
               Conread position:8-183
               
               
               Cow position:chr17:22189645-22189477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr17:24559507-24559332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr17:24841911-24841737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr17:26000333-26000163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr17:26072544-26072719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr17:27292240-27292415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr17:28465641-28465466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr17:29245648-29245485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr17:32278690-32278866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr17:32280882-32280706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr17:34860587-34860415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):75, 36

               
               
               Conread position:8-183
               
               
               Cow position:chr17:35193603-35193778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr17:35457604-35457776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):64, 47

               
               
               Conread position:8-183
               
               
               Cow position:chr17:36814579-36814403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr17:37815976-37816151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):16, 6

               
               
               Conread position:8-184
               
               
               Cow position:chr17:1469580-1469420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr17:3364803-3364632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):103, 56

               
               
               Conread position:8-184
               
               
               Cow position:chr17:3467965-3467793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr17:5012854-5013035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr17:6566698-6566521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):53, 93

               
               
               Conread position:8-184
               
               
               Cow position:chr17:7590243-7590422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr17:8823537-8823353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr17:10431750-10431937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):47, 76

               
               
               Conread position:8-184
               
               
               Cow position:chr17:10508218-10508393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):38, 55

               
               
               Conread position:8-184
               
               
               Cow position:chr17:11224324-11224145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):41, 136

               
               
               Conread position:8-184
               
               
               Cow position:chr17:11280875-11281055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):62, 156

               
               
               Conread position:8-184
               
               
               Cow position:chr17:12946145-12946308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr17:13243839-13244004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr17:20929458-20929282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:140
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr17:20992824-20992996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):66, 148

               
               
               Conread position:8-184
               
               
               Cow position:chr17:21738651-21738833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr17:24883356-24883530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr17:25126558-25126391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr17:25511456-25511286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr17:26231179-26230995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr17:32553836-32554006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):40, 27

               
               
               Conread position:8-184
               
               
               Cow position:chr17:33653479-33653649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):107, 43

               
               
               Conread position:8-184
               
               
               Cow position:chr17:40355475-40355299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:141
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr17:40394233-40394049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr17:40741868-40741689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):63, 41

               
               
               Conread position:8-185
               
               
               Cow position:chr17:5349909-5350083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:8-185
               
               
               Cow position:chr17:24582416-24582239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-185
               
               
               Cow position:chr17:24862669-24862498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:145
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr17:5038841-5039013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr17:7143071-7142895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr17:21292824-21293008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):53, 6

               
               
               Conread position:8-191
               
               
               Cow position:chr17:21806235-21806418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr17:21959469-21959654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:146
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr17:40383992-40384170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):42, 117

               
               
               Conread position:8-192
               
               
               Cow position:chr17:11962320-11962500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:8-194
               
               
               Cow position:chr17:25139489-25139293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-197
               
               
               Cow position:chr17:21718783-21718967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:8-200
               
               
               Cow position:chr17:34948851-34948662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):172, 148

               
               
               Conread position:8-201
               
               
               Cow position:chr17:27058335-27058532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):55, 191

               
               
               Conread position:8-201
               
               
               Cow position:chr17:28468338-28468153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):48, 57

               
               
               Conread position:8-206
               
               
               Cow position:chr17:14025693-14025892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:154
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:9-184
               
               
               Cow position:chr17:20904894-20905058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:9-184
               
               
               Cow position:chr17:43957874-43957701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:141
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:9-196
               
               
               Cow position:chr17:21788431-21788630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:10-148
               
               
               Cow position:chr17:15103529-15103663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:10-171
               
               
               Cow position:chr17:25709927-25709766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:10-182
               
               
               Cow position:chr17:15102677-15102851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:10-182
               
               
               Cow position:chr17:25128142-25128310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:10-183
               
               
               Cow position:chr17:1463116-1463289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:10-191
               
               
               Cow position:chr17:18720240-18720413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:10-191
               
               
               Cow position:chr17:35149315-35149493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):156, 0

               
               
               Conread position:11-147
               
               
               Cow position:chr17:29356032-29356162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:11-154
               
               
               Cow position:chr17:8663718-8663575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):53, 93

               
               
               Conread position:11-154
               
               
               Cow position:chr17:25095697-25095552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:11-155
               
               
               Cow position:chr17:21236736-21236592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-164
               
               
               Cow position:chr17:10221996-10222149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-172
               
               
               Cow position:chr17:24987413-24987260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):107, 51

               
               
               Conread position:11-173
               
               
               Cow position:chr17:25348578-25348420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:11-176
               
               
               Cow position:chr17:44234456-44234299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:11-177
               
               
               Cow position:chr17:25467196-25467033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):151, 0

               
               
               Conread position:11-178
               
               
               Cow position:chr17:28795769-28795936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-180
               
               
               Cow position:chr17:17222555-17222385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:11-181
               
               
               Cow position:chr17:9509783-9509952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:11-181
               
               
               Cow position:chr17:21777939-21777765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):151, 109

               
               
               Conread position:11-182
               
               
               Cow position:chr17:908950-908783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr17:1634282-1634449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr17:21039767-21039600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr17:21117284-21117455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr17:24587834-24587667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr17:29026286-29026114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr17:39964089-39963920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr17:15664887-15664719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr17:16868064-16868226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr17:30529339-30529503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr17:34078897-34079069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr17:40673584-40673412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr17:41616950-41616777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):64, 157

               
               
               Conread position:11-184
               
               
               Cow position:chr17:1035383-1035556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr17:7132213-7132399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr17:8836737-8836905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):43, 94

               
               
               Conread position:11-184
               
               
               Cow position:chr17:11839934-11839756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):154, 44

               
               
               Conread position:11-184
               
               
               Cow position:chr17:20848735-20848564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr17:21972916-21973089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr17:31856883-31856714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr17:40772041-40771877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:11-185
               
               
               Cow position:chr17:12289197-12289369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-185
               
               
               Cow position:chr17:18934469-18934300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:11-191
               
               
               Cow position:chr17:7571317-7571137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:144
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-191
               
               
               Cow position:chr17:20157819-20157641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):138, 57

               
               
               Conread position:11-191
               
               
               Cow position:chr17:27795866-27795682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):141, 60

               
               
               Conread position:11-191
               
               
               Cow position:chr17:33275548-33275714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:11-193
               
               
               Cow position:chr17:6317896-6318072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):122, 42

               
               
               Conread position:12-136
               
               
               Cow position:chr17:3541918-3541798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:12-147
               
               
               Cow position:chr17:36791337-36791204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:12-148
               
               
               Cow position:chr17:43717127-43717261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):119, 39

               
               
               Conread position:12-149
               
               
               Cow position:chr17:20881602-20881733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:12-155
               
               
               Cow position:chr17:24163244-24163106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:12-167
               
               
               Cow position:chr17:7037410-7037566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:12-168
               
               
               Cow position:chr17:7154775-7154628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):150, 41

               
               
               Conread position:12-168
               
               
               Cow position:chr17:20913318-20913169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-173
               
               
               Cow position:chr17:43323332-43323493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-176
               
               
               Cow position:chr17:5027254-5027411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-178
               
               
               Cow position:chr17:7732904-7733071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:12-181
               
               
               Cow position:chr17:32143299-32143130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):163, 158

               
               
               Conread position:12-182
               
               
               Cow position:chr17:5344832-5344660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:145
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):58, 33

               
               
               Conread position:12-182
               
               
               Cow position:chr17:7810537-7810712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr17:11664367-11664542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr17:20306543-20306369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):57, 131

               
               
               Conread position:12-182
               
               
               Cow position:chr17:21114745-21114911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr17:27183732-27183898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr17:34790855-34791022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):144, 43

               
               
               Conread position:12-182
               
               
               Cow position:chr17:38536429-38536593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr17:13414155-13414326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr17:15355144-15354973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr17:20884738-20884565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:145
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr17:37699130-37699308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr17:45135704-45135863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr17:9824877-9824710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr17:26448753-26448586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:12-187
               
               
               Cow position:chr17:17410510-17410331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:12-187
               
               
               Cow position:chr17:24895290-24895111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:12-190
               
               
               Cow position:chr17:31559781-31559605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:12-191
               
               
               Cow position:chr17:8986391-8986572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:12-205
               
               
               Cow position:chr17:20092919-20093106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:12-206
               
               
               Cow position:chr17:35043719-35043900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:13-154
               
               
               Cow position:chr17:6005009-6004869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:13-157
               
               
               Cow position:chr17:3471926-3471774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:13-176
               
               
               Cow position:chr17:4105778-4105945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:13-182
               
               
               Cow position:chr17:25189499-25189330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):46, 145

               
               
               Conread position:13-182
               
               
               Cow position:chr17:40276950-40276783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:14-128
               
               
               Cow position:chr17:9850461-9850575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:90
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-139
               
               
               Cow position:chr17:14668713-14668588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-145
               
               
               Cow position:chr17:42419918-42419789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:14-148
               
               
               Cow position:chr17:41009482-41009349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:14-161
               
               
               Cow position:chr17:5857358-5857510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:14-161
               
               
               Cow position:chr17:21363593-21363445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):41, 54

               
               
               Conread position:14-164
               
               
               Cow position:chr17:1466206-1466356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-168
               
               
               Cow position:chr17:8137610-8137462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:14-171
               
               
               Cow position:chr17:20801024-20800867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-172
               
               
               Cow position:chr17:32332882-32333038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:14-177
               
               
               Cow position:chr17:24111395-24111551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:14-179
               
               
               Cow position:chr17:40639157-40638993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):41, 56

               
               
               Conread position:14-180
               
               
               Cow position:chr17:5280442-5280609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):42, 148

               
               
               Conread position:14-181
               
               
               Cow position:chr17:29472667-29472510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:14-182
               
               
               Cow position:chr17:5288372-5288209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:14-182
               
               
               Cow position:chr17:28982385-28982224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:14-183
               
               
               Cow position:chr17:14049997-14050165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:14-183
               
               
               Cow position:chr17:36275546-36275375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:14-184
               
               
               Cow position:chr17:2810842-2810669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):144, 25

               
               
               Conread position:14-184
               
               
               Cow position:chr17:28888355-28888537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):23, 144

               
               
               Conread position:14-201
               
               
               Cow position:chr17:3320350-3320175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:16-184
               
               
               Cow position:chr17:2275671-2275511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:17-182
               
               
               Cow position:chr17:5720083-5719914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:18-183
               
               
               Cow position:chr17:4611857-4612021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:18-183
               
               
               Cow position:chr17:21744140-21743973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):40, 29

               
               
               Conread position:18-183
               
               
               Cow position:chr17:25594490-25594649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:18-183
               
               
               Cow position:chr17:30169027-30169194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):57, 37

               
               
               Conread position:18-185
               
               
               Cow position:chr17:25474839-25474672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:18-191
               
               
               Cow position:chr17:14004022-14003857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):154, 37

               
               
               Conread position:18-202
               
               
               Cow position:chr17:41380310-41380482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):172, 37

               
               
               Conread position:19-171
               
               
               Cow position:chr17:25097656-25097509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-177
               
               
               Cow position:chr17:36178843-36178994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-184
               
               
               Cow position:chr17:7698257-7698092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):29, 118

               
               
               Conread position:19-184
               
               
               Cow position:chr17:24077599-24077444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:19-184
               
               
               Cow position:chr17:30665475-30665313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:19-197
               
               
               Cow position:chr17:27303768-27303939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:19-200
               
               
               Cow position:chr17:5012044-5011863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):139, 164

               
               
               Conread position:19-201
               
               
               Cow position:chr17:25917093-25916920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):90, 36

               
               
               Conread position:19-212
               
               
               Cow position:chr17:12887559-12887376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:19-215
               
               
               Cow position:chr17:26757241-26757435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):61, 167

               
               
               Conread position:20-146
               
               
               Cow position:chr17:8660399-8660274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:20-154
               
               
               Cow position:chr17:7554065-7554193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:20-156
               
               
               Cow position:chr17:31985738-31985874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):117, 35

               
               
               Conread position:20-160
               
               
               Cow position:chr17:1282056-1282192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:20-182
               
               
               Cow position:chr17:32989677-32989519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:20-182
               
               
               Cow position:chr17:32993423-32993581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:20-184
               
               
               Cow position:chr17:15684709-15684550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):138, 42

               
               
               Conread position:20-184
               
               
               Cow position:chr17:18766782-18766956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:20-191
               
               
               Cow position:chr17:37129415-37129233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:21-182
               
               
               Cow position:chr17:27440374-27440219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):60, 34

               
               
               Conread position:21-183
               
               
               Cow position:chr17:20874607-20874438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:21-183
               
               
               Cow position:chr17:29080742-29080586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:21-184
               
               
               Cow position:chr17:9940904-9940732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:22-183
               
               
               Cow position:chr17:14652576-14652738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:25-175
               
               
               Cow position:chr17:21489428-21489575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:25-184
               
               
               Cow position:chr17:1492949-1493108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:26-184
               
               
               Cow position:chr17:10825673-10825520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):153, 27

               
               
               Conread position:30-177
               
               
               Cow position:chr17:21323687-21323546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:31-180
               
               
               Cow position:chr17:8723239-8723389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:34-184
               
               
               Cow position:chr17:20932521-20932372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:36-184
               
               
               Cow position:chr17:10803064-10802922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:37-184
               
               
               Cow position:chr17:25930352-25930498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:42-184
               
               
               Cow position:chr17:12342301-12342440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:43-173
               
               
               Cow position:chr17:21298625-21298495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:45-180
               
               
               Cow position:chr17:11985696-11985833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:47-168
               
               
               Cow position:chr17:3097478-3097598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:94
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:47-183
               
               
               Cow position:chr17:12880772-12880638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:47-184
               
               
               Cow position:chr17:3291246-3291113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:48-164
               
               
               Cow position:chr17:10650291-10650174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:98
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):12, 30

               
               
               Conread position:48-174
               
               
               Cow position:chr17:21032006-21031878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:48-183
               
               
               Cow position:chr17:1875867-1876001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr17:8079489-8079353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr17:21922456-21922593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:111
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr17:22074321-22074457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr17:23702801-23702664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):68, 29

               
               
               Conread position:48-184
               
               
               Cow position:chr17:27202869-27203005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):22, 34

               
               
               Conread position:48-185
               
               
               Cow position:chr17:9713165-9713302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-185
               
               
               Cow position:chr17:25193350-25193487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-191
               
               
               Cow position:chr17:28814315-28814459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:48-191
               
               
               Cow position:chr17:45369000-45369144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:48-214
               
               
               Cow position:chr17:35541993-35542156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:51-182
               
               
               Cow position:chr17:25718280-25718146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:51-183
               
               
               Cow position:chr17:26807070-26806939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:51-184
               
               
               Cow position:chr17:3375739-3375608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:51-184
               
               
               Cow position:chr17:40288827-40288959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:55-184
               
               
               Cow position:chr17:5900539-5900410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:55-184
               
               
               Cow position:chr17:21680949-21680823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:105
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:56-178
               
               
               Cow position:chr17:42346850-42346972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-181
               
               
               Cow position:chr17:11215062-11215184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):21, 96

               
               
               Conread position:56-182
               
               
               Cow position:chr17:9911926-9911803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:56-183
               
               
               Cow position:chr17:969052-968926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:106
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr17:11831946-11832074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-202
               
               
               Cow position:chr17:21359195-21359047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):7, 69

               
               
               Conread position:57-182
               
               
               Cow position:chr17:25349658-25349780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:57-191
               
               
               Cow position:chr17:38833211-38833075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:58-184
               
               
               Cow position:chr17:37430338-37430464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:61-184
               
               
               Cow position:chr17:16158653-16158532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:61-184
               
               
               Cow position:chr17:25032318-25032441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:99
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:61-184
               
               
               Cow position:chr17:30718254-30718377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-173
               
               
               Cow position:chr17:8153179-8153289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:64-182
               
               
               Cow position:chr17:8108197-8108311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:64-184
               
               
               Cow position:chr17:5422908-5423028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-184
               
               
               Cow position:chr17:20234372-20234252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-184
               
               
               Cow position:chr17:34835947-34836067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-184
               
               
               Cow position:chr17:38263328-38263449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:94
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:66-170
               
               
               Cow position:chr17:22139739-22139635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:85
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:66-191
               
               
               Cow position:chr17:34836330-34836205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:101
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:66-208
               
               
               Cow position:chr17:9171544-9171687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):123, 111

               
               
               Conread position:67-179
               
               
               Cow position:chr17:5743133-5743245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:67-183
               
               
               Cow position:chr17:43141551-43141667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:67-192
               
               
               Cow position:chr17:3067701-3067826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:68-184
               
               
               Cow position:chr17:35334252-35334136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:69-183
               
               
               Cow position:chr17:7675000-7675113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:70-182
               
               
               Cow position:chr17:15301167-15301279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:74-183
               
               
               Cow position:chr17:26730460-26730569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:91
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-178
               
               
               Cow position:chr18:38363622-38363446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:1-181
               
               
               Cow position:chr18:19158023-19157844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):82, 9

               
               
               Conread position:3-141
               
               
               Cow position:chr18:19143825-19143962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:3-147
               
               
               Cow position:chr18:41253688-41253544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-167
               
               
               Cow position:chr18:39710256-39710090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:3-168
               
               
               Cow position:chr18:35950190-35950018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:3-178
               
               
               Cow position:chr18:43472349-43472174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-181
               
               
               Cow position:chr18:346350-346527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):166, 154

               
               
               Conread position:3-181
               
               
               Cow position:chr18:21969656-21969833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):74, 150

               
               
               Conread position:3-182
               
               
               Cow position:chr18:23446914-23447092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:3-182
               
               
               Cow position:chr18:42212590-42212414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:3-182
               
               
               Cow position:chr18:53053084-53053265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr18:1392424-1392604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr18:7965377-7965200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr18:17649594-17649770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr18:19628857-19629037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr18:23649071-23648890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr18:24946225-24946056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr18:43283611-43283788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr18:43950973-43950794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):112, 78

               
               
               Conread position:3-183
               
               
               Cow position:chr18:44909197-44909021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr18:46276154-46276334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr18:56463583-56463762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:3-184
               
               
               Cow position:chr18:24266258-24266440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:3-184
               
               
               Cow position:chr18:36450046-36449865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-184
               
               
               Cow position:chr18:55692963-55692783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:3-191
               
               
               Cow position:chr18:42454874-42455061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:3-196
               
               
               Cow position:chr18:6454153-6453975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:3-210
               
               
               Cow position:chr18:47872178-47871984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:5-176
               
               
               Cow position:chr18:2773244-2773417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:7-155
               
               
               Cow position:chr18:35535006-35535150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:7-160
               
               
               Cow position:chr18:19701825-19701668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):55, 148

               
               
               Conread position:7-183
               
               
               Cow position:chr18:52414115-52413934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:7-184
               
               
               Cow position:chr18:11657800-11657624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:8-125
               
               
               Cow position:chr18:18816071-18815954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):48, 77

               
               
               Conread position:8-128
               
               
               Cow position:chr18:7487375-7487255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-130
               
               
               Cow position:chr18:35235881-35236002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:8-130
               
               
               Cow position:chr18:51712578-51712696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):24, 49

               
               
               Conread position:8-131
               
               
               Cow position:chr18:28539967-28540092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:8-134
               
               
               Cow position:chr18:37690291-37690167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:104
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-135
               
               
               Cow position:chr18:10757917-10758039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):31, 40

               
               
               Conread position:8-144
               
               
               Cow position:chr18:4485736-4485606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:8-145
               
               
               Cow position:chr18:43014730-43014861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-146
               
               
               Cow position:chr18:2576553-2576695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:8-147
               
               
               Cow position:chr18:15351585-15351726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr18:50004566-50004702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-149
               
               
               Cow position:chr18:12270652-12270503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:8-149
               
               
               Cow position:chr18:36500942-36501076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):75, 42

               
               
               Conread position:8-149
               
               
               Cow position:chr18:47175238-47175379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):29, 114

               
               
               Conread position:8-150
               
               
               Cow position:chr18:3709371-3709231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:8-154
               
               
               Cow position:chr18:4715468-4715611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):8, 28

               
               
               Conread position:8-155
               
               
               Cow position:chr18:30360003-30360153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:8-159
               
               
               Cow position:chr18:49440983-49440833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:8-160
               
               
               Cow position:chr18:6399482-6399646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):47, 30

               
               
               Conread position:8-161
               
               
               Cow position:chr18:40028364-40028205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-164
               
               
               Cow position:chr18:5189551-5189706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:8-164
               
               
               Cow position:chr18:30341042-30341197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:8-167
               
               
               Cow position:chr18:17195206-17195361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-167
               
               
               Cow position:chr18:39860638-39860787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:8-168
               
               
               Cow position:chr18:56181319-56181472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:8-171
               
               
               Cow position:chr18:50612376-50612551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:8-172
               
               
               Cow position:chr18:37381951-37382112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):64, 81

               
               
               Conread position:8-173
               
               
               Cow position:chr18:4530695-4530537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:8-173
               
               
               Cow position:chr18:28322793-28322635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-175
               
               
               Cow position:chr18:19961996-19962167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):42, 162

               
               
               Conread position:8-177
               
               
               Cow position:chr18:25598093-25598258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr18:1954440-1954617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):54, 29

               
               
               Conread position:8-179
               
               
               Cow position:chr18:3097885-3098060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr18:4489761-4489936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr18:11672193-11672015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):35, 132

               
               
               Conread position:8-179
               
               
               Cow position:chr18:22789950-22790116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr18:28657774-28657939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr18:42479440-42479614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):34, 58

               
               
               Conread position:8-180
               
               
               Cow position:chr18:237973-238145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-180
               
               
               Cow position:chr18:12584704-12584868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:8-180
               
               
               Cow position:chr18:52251714-52251886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:141
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr18:35795080-35795252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr18:39097432-39097606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):43, 105

               
               
               Conread position:8-182
               
               
               Cow position:chr18:10977072-10977241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr18:18918823-18918989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr18:20998270-20998447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr18:38937960-38937790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr18:39811444-39811614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr18:42747738-42747561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):62, 155

               
               
               Conread position:8-182
               
               
               Cow position:chr18:47547839-47548017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:8-182
               
               
               Cow position:chr18:49015256-49015098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr18:50632305-50632473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr18:135520-135686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr18:4495750-4495918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr18:12059134-12058970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr18:14172073-14172239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr18:16659288-16659464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr18:19796777-19796955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):64, 47

               
               
               Conread position:8-183
               
               
               Cow position:chr18:23809978-23810152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr18:23941478-23941655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):65, 165

               
               
               Conread position:8-183
               
               
               Cow position:chr18:27079007-27078836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr18:29372010-29371835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr18:48112826-48112994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr18:54572148-54572324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):144, 58

               
               
               Conread position:8-183
               
               
               Cow position:chr18:55747828-55747654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr18:247557-247721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr18:1931319-1931487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr18:4556024-4556199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):49, 144

               
               
               Conread position:8-184
               
               
               Cow position:chr18:5766548-5766380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):88, 53

               
               
               Conread position:8-184
               
               
               Cow position:chr18:10214051-10214224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):123, 56

               
               
               Conread position:8-184
               
               
               Cow position:chr18:15613724-15613893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr18:19809543-19809715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr18:23163034-23162860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):57, 30

               
               
               Conread position:8-184
               
               
               Cow position:chr18:23652974-23653156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):56, 33

               
               
               Conread position:8-184
               
               
               Cow position:chr18:24719448-24719280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr18:24759519-24759689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr18:25757174-25757344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr18:29474878-29474711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr18:39623944-39623767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr18:42427756-42427587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:146
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr18:46048894-46048719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):27, 56

               
               
               Conread position:8-184
               
               
               Cow position:chr18:49655821-49655652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):113, 47

               
               
               Conread position:8-184
               
               
               Cow position:chr18:50359465-50359299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr18:52684462-52684634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr18:56183360-56183536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):62, 79

               
               
               Conread position:8-185
               
               
               Cow position:chr18:26999029-26998849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):71, 78

               
               
               Conread position:8-186
               
               
               Cow position:chr18:21751520-21751340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):139, 69

               
               
               Conread position:8-186
               
               
               Cow position:chr18:51383258-51383432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:8-187
               
               
               Cow position:chr18:41702974-41702801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-188
               
               
               Cow position:chr18:43057033-43056862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr18:5647948-5647773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr18:39168670-39168492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:8-192
               
               
               Cow position:chr18:5072277-5072451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:8-192
               
               
               Cow position:chr18:22055722-22055915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-198
               
               
               Cow position:chr18:46985427-46985618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):168, 0

               
               
               Conread position:8-202
               
               
               Cow position:chr18:22328286-22328089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):172, 0

               
               
               Conread position:8-203
               
               
               Cow position:chr18:51675944-51676140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):24, 83

               
               
               Conread position:8-229
               
               
               Cow position:chr18:18664225-18664450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):64, 181

               
               
               Conread position:9-149
               
               
               Cow position:chr18:44205950-44206082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:9-167
               
               
               Cow position:chr18:10860951-10861109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):59, 96

               
               
               Conread position:9-183
               
               
               Cow position:chr18:20175055-20175226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:10-168
               
               
               Cow position:chr18:21528788-21528632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):104, 61

               
               
               Conread position:10-175
               
               
               Cow position:chr18:3412502-3412337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:10-176
               
               
               Cow position:chr18:697081-697242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:10-178
               
               
               Cow position:chr18:2108386-2108220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):45, 27

               
               
               Conread position:10-179
               
               
               Cow position:chr18:22568930-22569094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:10-180
               
               
               Cow position:chr18:39460355-39460191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:10-182
               
               
               Cow position:chr18:9974192-9974359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:10-183
               
               
               Cow position:chr18:18961694-18961867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):71, 84

               
               
               Conread position:10-184
               
               
               Cow position:chr18:27388734-27388551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):44, 110

               
               
               Conread position:10-184
               
               
               Cow position:chr18:47486184-47486011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:10-187
               
               
               Cow position:chr18:33757152-33756984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):99, 45

               
               
               Conread position:10-205
               
               
               Cow position:chr18:39662919-39662727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):69, 91

               
               
               Conread position:11-150
               
               
               Cow position:chr18:44044203-44044342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):79, 107

               
               
               Conread position:11-156
               
               
               Cow position:chr18:22045274-22045418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:11-157
               
               
               Cow position:chr18:104193-104043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:11-161
               
               
               Cow position:chr18:4000487-4000336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:11-163
               
               
               Cow position:chr18:48594076-48594229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:11-166
               
               
               Cow position:chr18:16381998-16381843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-167
               
               
               Cow position:chr18:52387081-52387236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:11-173
               
               
               Cow position:chr18:26586475-26586636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:11-174
               
               
               Cow position:chr18:24022752-24022595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:11-176
               
               
               Cow position:chr18:4718399-4718234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-179
               
               
               Cow position:chr18:3180547-3180383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:11-179
               
               
               Cow position:chr18:7481288-7481125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):50, 78

               
               
               Conread position:11-179
               
               
               Cow position:chr18:49161163-49161331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):49, 80

               
               
               Conread position:11-179
               
               
               Cow position:chr18:55499207-55499044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:11-180
               
               
               Cow position:chr18:54513255-54513087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr18:20641364-20641527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr18:45903759-45903925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr18:7951256-7951083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):42, 16

               
               
               Conread position:11-183
               
               
               Cow position:chr18:19765323-19765157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr18:19868121-19868290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):146, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr18:38211296-38211129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr18:42290197-42290359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr18:42292925-42293087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr18:46277145-46277316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):29, 140

               
               
               Conread position:11-183
               
               
               Cow position:chr18:49602905-49603076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):170, 44

               
               
               Conread position:11-183
               
               
               Cow position:chr18:50567041-50566869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr18:5632402-5632235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr18:11867475-11867304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):115, 51

               
               
               Conread position:11-184
               
               
               Cow position:chr18:12273791-12273625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr18:20174000-20174162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr18:31159135-31159306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):81, 16

               
               
               Conread position:11-184
               
               
               Cow position:chr18:34490418-34490247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):126, 44

               
               
               Conread position:11-184
               
               
               Cow position:chr18:37023400-37023583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr18:37187857-37188030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr18:40047367-40047531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr18:47417137-47416969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr18:51643232-51643398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr18:51757231-51757061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:11-187
               
               
               Cow position:chr18:23821692-23821868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:145
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-191
               
               
               Cow position:chr18:45558280-45558107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):140, 41

               
               
               Conread position:11-191
               
               
               Cow position:chr18:51691327-51691502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):23, 44

               
               
               Conread position:11-198
               
               
               Cow position:chr18:55140419-55140605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:12-131
               
               
               Cow position:chr18:4857583-4857704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:12-135
               
               
               Cow position:chr18:35171487-35171364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:96
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-143
               
               
               Cow position:chr18:51711610-51711741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):61, 92

               
               
               Conread position:12-148
               
               
               Cow position:chr18:44514226-44514089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:12-152
               
               
               Cow position:chr18:49126885-49127018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:12-154
               
               
               Cow position:chr18:33896275-33896421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:12-156
               
               
               Cow position:chr18:39865862-39866016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:12-169
               
               
               Cow position:chr18:49280924-49281081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-175
               
               
               Cow position:chr18:49040470-49040640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:12-178
               
               
               Cow position:chr18:10051885-10051720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:12-179
               
               
               Cow position:chr18:35874214-35874050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):19, 51

               
               
               Conread position:12-181
               
               
               Cow position:chr18:3158447-3158625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):43, 156

               
               
               Conread position:12-181
               
               
               Cow position:chr18:45897863-45897702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr18:19614046-19613881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):51, 107

               
               
               Conread position:12-182
               
               
               Cow position:chr18:31672382-31672543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr18:52383043-52382873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr18:8208287-8208457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:140
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr18:9895861-9896026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):75, 93

               
               
               Conread position:12-183
               
               
               Cow position:chr18:14586343-14586502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr18:19641111-19640940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr18:35827239-35827405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr18:50974149-50974326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr18:1571103-1571268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):6, 45

               
               
               Conread position:12-184
               
               
               Cow position:chr18:7109267-7109097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):52, 59

               
               
               Conread position:12-184
               
               
               Cow position:chr18:40759357-40759174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr18:51192609-51192773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr18:51405778-51405939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-185
               
               
               Cow position:chr18:31557021-31557194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-185
               
               
               Cow position:chr18:31727509-31727688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):131, 43

               
               
               Conread position:12-186
               
               
               Cow position:chr18:39114979-39115152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):171, 0

               
               
               Conread position:12-191
               
               
               Cow position:chr18:9366058-9365879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):156, 54

               
               
               Conread position:12-206
               
               
               Cow position:chr18:35857788-35857978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):156, 59

               
               
               Conread position:13-173
               
               
               Cow position:chr18:44917889-44917735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:13-183
               
               
               Cow position:chr18:14577166-14576996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:13-184
               
               
               Cow position:chr18:2592025-2592197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):37, 141

               
               
               Conread position:13-185
               
               
               Cow position:chr18:45186010-45185837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:143
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):169, 0

               
               
               Conread position:14-139
               
               
               Cow position:chr18:34389247-34389371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:14-155
               
               
               Cow position:chr18:44774071-44773927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):31, 101

               
               
               Conread position:14-164
               
               
               Cow position:chr18:4851350-4851496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):148, 39

               
               
               Conread position:14-168
               
               
               Cow position:chr18:33159077-33158925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:14-171
               
               
               Cow position:chr18:47920883-47920726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-182
               
               
               Cow position:chr18:48407871-48407708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:14-182
               
               
               Cow position:chr18:49038593-49038431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:14-183
               
               
               Cow position:chr18:2774002-2774170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:14-183
               
               
               Cow position:chr18:22120749-22120917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):60, 18

               
               
               Conread position:14-183
               
               
               Cow position:chr18:32253376-32253541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:14-184
               
               
               Cow position:chr18:47565951-47565794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:14-184
               
               
               Cow position:chr18:53642616-53642781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):25, 35

               
               
               Conread position:14-190
               
               
               Cow position:chr18:7956285-7956108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):171, 0

               
               
               Conread position:14-191
               
               
               Cow position:chr18:1144055-1144223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:14-198
               
               
               Cow position:chr18:33504124-33504306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):141, 46

               
               
               Conread position:15-175
               
               
               Cow position:chr18:7134414-7134252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:15-182
               
               
               Cow position:chr18:49970517-49970684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:15-183
               
               
               Cow position:chr18:55777950-55777780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:15-184
               
               
               Cow position:chr18:3212013-3211845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:15-208
               
               
               Cow position:chr18:11330356-11330163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):73, 168

               
               
               Conread position:16-181
               
               
               Cow position:chr18:5995603-5995440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:16-185
               
               
               Cow position:chr18:30673303-30673461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:17-149
               
               
               Cow position:chr18:56157095-56157225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:17-201
               
               
               Cow position:chr18:46647032-46647205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:18-175
               
               
               Cow position:chr18:32125-31969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):154, 0

               
               
               Conread position:18-183
               
               
               Cow position:chr18:21782819-21782659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:18-184
               
               
               Cow position:chr18:11754263-11754097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:139
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:18-184
               
               
               Cow position:chr18:43555383-43555557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:18-191
               
               
               Cow position:chr18:35888958-35889135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):45, 20

               
               
               Conread position:18-191
               
               
               Cow position:chr18:48962069-48961894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:19-149
               
               
               Cow position:chr18:16356356-16356484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:19-149
               
               
               Cow position:chr18:53787197-53787069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):22, 37

               
               
               Conread position:19-154
               
               
               Cow position:chr18:6818532-6818671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):53, 13

               
               
               Conread position:19-154
               
               
               Cow position:chr18:33883918-33883777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:19-169
               
               
               Cow position:chr18:24508095-24508249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:19-170
               
               
               Cow position:chr18:23898545-23898399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:19-180
               
               
               Cow position:chr18:6005368-6005527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):155, 64

               
               
               Conread position:19-181
               
               
               Cow position:chr18:3518393-3518238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):86, 30

               
               
               Conread position:19-181
               
               
               Cow position:chr18:53092880-53093048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):27, 20

               
               
               Conread position:19-182
               
               
               Cow position:chr18:32600189-32600021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:19-183
               
               
               Cow position:chr18:858954-858792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:19-183
               
               
               Cow position:chr18:23243320-23243160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):74, 26

               
               
               Conread position:19-184
               
               
               Cow position:chr18:2619068-2619246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:19-185
               
               
               Cow position:chr18:16044017-16044185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:19-196
               
               
               Cow position:chr18:29390072-29390240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):132, 31

               
               
               Conread position:19-198
               
               
               Cow position:chr18:4772856-4773038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):155, 0

               
               
               Conread position:19-200
               
               
               Cow position:chr18:6609709-6609906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):44, 191

               
               
               Conread position:20-184
               
               
               Cow position:chr18:4757902-4758065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):46, 32

               
               
               Conread position:20-184
               
               
               Cow position:chr18:42719859-42720023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):44, 96

               
               
               Conread position:21-149
               
               
               Cow position:chr18:1793818-1793692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:21-164
               
               
               Cow position:chr18:27637622-27637479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:32-181
               
               
               Cow position:chr18:21768730-21768587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:33-152
               
               
               Cow position:chr18:38438676-38438792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:36-189
               
               
               Cow position:chr18:18688984-18689133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:37-183
               
               
               Cow position:chr18:47835938-47835793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:37-184
               
               
               Cow position:chr18:4649675-4649528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):24, 75

               
               
               Conread position:38-183
               
               
               Cow position:chr18:29080920-29080775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:41-184
               
               
               Cow position:chr18:27109183-27109325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:41-185
               
               
               Cow position:chr18:47123345-47123487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:43-179
               
               
               Cow position:chr18:21192307-21192441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:44-184
               
               
               Cow position:chr18:24342951-24342810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:47-184
               
               
               Cow position:chr18:24529770-24529902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:48-175
               
               
               Cow position:chr18:4624047-4624174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-179
               
               
               Cow position:chr18:51392540-51392669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr18:5701352-5701216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):29, 111

               
               
               Conread position:48-184
               
               
               Cow position:chr18:35692957-35692823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:48-191
               
               
               Cow position:chr18:10656545-10656398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:49-184
               
               
               Cow position:chr18:21266608-21266473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):40, 19

               
               
               Conread position:49-191
               
               
               Cow position:chr18:5078672-5078813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:51-184
               
               
               Cow position:chr18:19883633-19883499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:51-184
               
               
               Cow position:chr18:19896351-19896484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:51-184
               
               
               Cow position:chr18:52658756-52658624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:51-191
               
               
               Cow position:chr18:7359843-7359705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:51-191
               
               
               Cow position:chr18:16997354-16997214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:51-191
               
               
               Cow position:chr18:52634971-52635110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:55-184
               
               
               Cow position:chr18:4203832-4203961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):9, 87

               
               
               Conread position:55-184
               
               
               Cow position:chr18:45985530-45985658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:55-184
               
               
               Cow position:chr18:46072559-46072430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:55-187
               
               
               Cow position:chr18:19273000-19273132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-149
               
               
               Cow position:chr18:55123341-55123248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:94
               
               
               Alignm identity:81
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-178
               
               
               Cow position:chr18:53962333-53962453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:56-181
               
               
               Cow position:chr18:19433857-19433733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr18:39434919-39434794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:56-188
               
               
               Cow position:chr18:56159556-56159425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:56-189
               
               
               Cow position:chr18:52862730-52862599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:56-191
               
               
               Cow position:chr18:22214583-22214448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:57-164
               
               
               Cow position:chr18:35077343-35077237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:87
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:57-191
               
               
               Cow position:chr18:19788074-19787939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:57-191
               
               
               Cow position:chr18:38757741-38757878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:58-168
               
               
               Cow position:chr18:52589875-52589982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:58-181
               
               
               Cow position:chr18:49982823-49982700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:58-184
               
               
               Cow position:chr18:51655948-51656075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:59-184
               
               
               Cow position:chr18:25282463-25282586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:101
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:59-184
               
               
               Cow position:chr18:47410635-47410510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:102
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-184
               
               
               Cow position:chr18:52855144-52855022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-185
               
               
               Cow position:chr18:2549214-2549337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-161
               
               
               Cow position:chr18:11262923-11262827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:87
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:64-167
               
               
               Cow position:chr18:52625378-52625480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:85
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:64-177
               
               
               Cow position:chr18:5711566-5711677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:64-184
               
               
               Cow position:chr18:11322683-11322563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-191
               
               
               Cow position:chr18:30586138-30586261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:65-184
               
               
               Cow position:chr18:22170704-22170585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:67-178
               
               
               Cow position:chr18:36746175-36746286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:93
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:67-187
               
               
               Cow position:chr18:26458264-26458385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:95
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:67-191
               
               
               Cow position:chr18:17005345-17005220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:101
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:69-184
               
               
               Cow position:chr18:4757490-4757603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:94
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:69-184
               
               
               Cow position:chr18:11377446-11377332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:91
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:71-184
               
               
               Cow position:chr18:47525488-47525375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:94
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:79-178
               
               
               Cow position:chr18:28297792-28297889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:86
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:81-184
               
               
               Cow position:chr18:14888361-14888260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:89
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:1-160
               
               
               Cow position:chr19:43058706-43058540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):61, 7

               
               
               Conread position:1-168
               
               
               Cow position:chr19:41497474-41497641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):64, 7

               
               
               Conread position:1-181
               
               
               Cow position:chr19:39587087-39587252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:2-183
               
               
               Cow position:chr19:39795357-39795180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):71, 53

               
               
               Conread position:3-145
               
               
               Cow position:chr19:54103069-54102928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:3-149
               
               
               Cow position:chr19:30917775-30917920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:3-155
               
               
               Cow position:chr19:36978438-36978285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):79, 94

               
               
               Conread position:3-161
               
               
               Cow position:chr19:18766194-18766035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:3-164
               
               
               Cow position:chr19:12801378-12801538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:3-171
               
               
               Cow position:chr19:38597234-38597071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):155, 52

               
               
               Conread position:3-178
               
               
               Cow position:chr19:44012-43838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:3-178
               
               
               Cow position:chr19:22959703-22959878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):31, 38

               
               
               Conread position:3-179
               
               
               Cow position:chr19:11211108-11211284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-181
               
               
               Cow position:chr19:5912790-5912966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):154, 162

               
               
               Conread position:3-181
               
               
               Cow position:chr19:21224922-21224746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:3-182
               
               
               Cow position:chr19:4297852-4297678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:3-182
               
               
               Cow position:chr19:25854712-25854891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr19:1355773-1355593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr19:19931306-19931122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr19:33912459-33912634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr19:38111634-38111460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr19:38842390-38842569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr19:43035410-43035230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-184
               
               
               Cow position:chr19:432957-433140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:3-188
               
               
               Cow position:chr19:20665900-20666085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-191
               
               
               Cow position:chr19:23085025-23084837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-191
               
               
               Cow position:chr19:55300967-55301154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):69, 28

               
               
               Conread position:3-203
               
               
               Cow position:chr19:51905713-51905513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-215
               
               
               Cow position:chr19:20437434-20437225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):154, 0

               
               
               Conread position:5-171
               
               
               Cow position:chr19:33610055-33609892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):163, 66

               
               
               Conread position:5-175
               
               
               Cow position:chr19:4586384-4586549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:5-182
               
               
               Cow position:chr19:35444339-35444514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):164, 0

               
               
               Conread position:5-183
               
               
               Cow position:chr19:33748018-33747840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:5-198
               
               
               Cow position:chr19:38917441-38917247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:7-147
               
               
               Cow position:chr19:55742119-55742259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:7-163
               
               
               Cow position:chr19:51637208-51637051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):57, 153

               
               
               Conread position:7-165
               
               
               Cow position:chr19:22167044-22167210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):49, 90

               
               
               Conread position:7-168
               
               
               Cow position:chr19:53472733-53472572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):61, 152

               
               
               Conread position:7-183
               
               
               Cow position:chr19:47859148-47859325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):72, 94

               
               
               Conread position:7-191
               
               
               Cow position:chr19:46094464-46094654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:8-111
               
               
               Cow position:chr19:38637622-38637725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:84
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-124
               
               
               Cow position:chr19:16686820-16686935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:8-129
               
               
               Cow position:chr19:8603503-8603379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:8-144
               
               
               Cow position:chr19:8864905-8864770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:8-144
               
               
               Cow position:chr19:24068119-24068255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-144
               
               
               Cow position:chr19:37667153-37667023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:8-145
               
               
               Cow position:chr19:49683700-49683837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-146
               
               
               Cow position:chr19:40650947-40650811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:8-147
               
               
               Cow position:chr19:30541404-30541538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):135, 53

               
               
               Conread position:8-148
               
               
               Cow position:chr19:30384935-30385068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr19:42868180-42868040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-149
               
               
               Cow position:chr19:4485986-4486126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:8-149
               
               
               Cow position:chr19:24224496-24224363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-149
               
               
               Cow position:chr19:27968532-27968672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:8-149
               
               
               Cow position:chr19:28918572-28918434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):98, 47

               
               
               Conread position:8-149
               
               
               Cow position:chr19:42544692-42544552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:8-154
               
               
               Cow position:chr19:46822871-46822728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:8-154
               
               
               Cow position:chr19:54157573-54157718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:8-155
               
               
               Cow position:chr19:21790895-21790751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:8-166
               
               
               Cow position:chr19:33988231-33988077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):64, 48

               
               
               Conread position:8-166
               
               
               Cow position:chr19:52621685-52621850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):62, 21

               
               
               Conread position:8-167
               
               
               Cow position:chr19:33307746-33307587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-167
               
               
               Cow position:chr19:35623555-35623400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):55, 115

               
               
               Conread position:8-168
               
               
               Cow position:chr19:24220344-24220493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:8-168
               
               
               Cow position:chr19:41718800-41718959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):61, 76

               
               
               Conread position:8-172
               
               
               Cow position:chr19:2137666-2137824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-173
               
               
               Cow position:chr19:1978337-1978181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:8-173
               
               
               Cow position:chr19:19738165-19738000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-173
               
               
               Cow position:chr19:39981901-39981737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:8-174
               
               
               Cow position:chr19:26176043-26176209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-174
               
               
               Cow position:chr19:39698449-39698286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-175
               
               
               Cow position:chr19:23304327-23304492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:8-175
               
               
               Cow position:chr19:43413941-43413781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-176
               
               
               Cow position:chr19:9573007-9573166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:8-176
               
               
               Cow position:chr19:12760938-12761106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-176
               
               
               Cow position:chr19:26269063-26269237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:8-178
               
               
               Cow position:chr19:7558708-7558543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:8-178
               
               
               Cow position:chr19:7594994-7595148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-178
               
               
               Cow position:chr19:25927248-25927414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):137, 40

               
               
               Conread position:8-179
               
               
               Cow position:chr19:6417770-6417607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr19:21199312-21199133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr19:21378304-21378475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):61, 36

               
               
               Conread position:8-179
               
               
               Cow position:chr19:31729428-31729257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr19:39057410-39057236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr19:41343478-41343306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):109, 21

               
               
               Conread position:8-179
               
               
               Cow position:chr19:43190091-43189914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr19:50849997-50849833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):31, 46

               
               
               Conread position:8-180
               
               
               Cow position:chr19:15076029-15076207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:8-180
               
               
               Cow position:chr19:51294123-51294290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr19:268510-268346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr19:5521996-5522163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr19:27180078-27180257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr19:39103851-39104023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):154, 76

               
               
               Conread position:8-181
               
               
               Cow position:chr19:51621015-51621188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr19:1664021-1664199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr19:4459280-4459449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr19:6797117-6797291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr19:7637073-7637244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr19:37466899-37467070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr19:41024383-41024215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr19:41585134-41584960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr19:49221460-49221630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr19:2068426-2068257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr19:6687835-6688009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):70, 144

               
               
               Conread position:8-183
               
               
               Cow position:chr19:8869737-8869569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr19:10574104-10574279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr19:10755463-10755299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr19:14253797-14253622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr19:14472616-14472792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr19:18515849-18515675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):62, 106

               
               
               Conread position:8-183
               
               
               Cow position:chr19:18826398-18826573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr19:20378872-20379042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):80, 53

               
               
               Conread position:8-183
               
               
               Cow position:chr19:21817128-21816957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr19:23378839-23378666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr19:24453346-24453521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr19:27965983-27966156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):161, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr19:28924922-28924747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):16, 57

               
               
               Conread position:8-183
               
               
               Cow position:chr19:31763658-31763481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):108, 22

               
               
               Conread position:8-183
               
               
               Cow position:chr19:35246107-35245932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr19:41497833-41498007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):152, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr19:42236207-42236018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr19:43431160-43431337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):50, 78

               
               
               Conread position:8-183
               
               
               Cow position:chr19:55655517-55655350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr19:3217166-3217004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr19:6344244-6344063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):44, 116

               
               
               Conread position:8-184
               
               
               Cow position:chr19:8185367-8185192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:145
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr19:9390980-9391162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr19:24933369-24933534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):154, 45

               
               
               Conread position:8-184
               
               
               Cow position:chr19:34166530-34166360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr19:38021604-38021433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr19:38664152-38664331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):13, 155

               
               
               Conread position:8-184
               
               
               Cow position:chr19:42695151-42694985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr19:49290296-49290465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr19:51751004-51751176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr19:52185595-52185777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr19:55590397-55590222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):152, 0

               
               
               Conread position:8-185
               
               
               Cow position:chr19:23088143-23087972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-185
               
               
               Cow position:chr19:52356414-52356240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-185
               
               
               Cow position:chr19:54943128-54942957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:8-187
               
               
               Cow position:chr19:25526441-25526270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:8-187
               
               
               Cow position:chr19:38717171-38717362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr19:15887154-15887338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):40, 30

               
               
               Conread position:8-191
               
               
               Cow position:chr19:33913692-33913509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr19:35321975-35322153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):26, 36

               
               
               Conread position:8-191
               
               
               Cow position:chr19:39613010-39613183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-195
               
               
               Cow position:chr19:3857748-3857928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:8-195
               
               
               Cow position:chr19:11816561-11816746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):41, 64

               
               
               Conread position:8-197
               
               
               Cow position:chr19:12601964-12601786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-202
               
               
               Cow position:chr19:22871094-22871284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):165, 56

               
               
               Conread position:8-214
               
               
               Cow position:chr19:29139367-29139165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):163, 0

               
               
               Conread position:9-121
               
               
               Cow position:chr19:21244052-21244163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:9-177
               
               
               Cow position:chr19:42776595-42776429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:9-182
               
               
               Cow position:chr19:30471196-30471363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:9-183
               
               
               Cow position:chr19:25673362-25673532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):5, 51

               
               
               Conread position:9-183
               
               
               Cow position:chr19:55957406-55957578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):40, 149

               
               
               Conread position:9-184
               
               
               Cow position:chr19:47466364-47466189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):128, 62

               
               
               Conread position:9-184
               
               
               Cow position:chr19:50562844-50562670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:9-187
               
               
               Cow position:chr19:32505947-32506131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:9-191
               
               
               Cow position:chr19:53371733-53371916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:9-192
               
               
               Cow position:chr19:26975910-26976086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:10-138
               
               
               Cow position:chr19:39378135-39378256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:107
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:10-146
               
               
               Cow position:chr19:51031418-51031556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:10-176
               
               
               Cow position:chr19:18013344-18013509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:10-182
               
               
               Cow position:chr19:47453591-47453423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:10-183
               
               
               Cow position:chr19:25382522-25382697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:10-184
               
               
               Cow position:chr19:22449757-22449937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:10-185
               
               
               Cow position:chr19:34757832-34758014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:10-201
               
               
               Cow position:chr19:20935913-20935727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):30, 46

               
               
               Conread position:10-208
               
               
               Cow position:chr19:6854124-6854314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):7, 46

               
               
               Conread position:11-131
               
               
               Cow position:chr19:54105615-54105495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-144
               
               
               Cow position:chr19:23416721-23416854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-148
               
               
               Cow position:chr19:6855076-6854943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:11-148
               
               
               Cow position:chr19:35072892-35073028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:11-155
               
               
               Cow position:chr19:34420568-34420427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:11-155
               
               
               Cow position:chr19:40127006-40127148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:11-156
               
               
               Cow position:chr19:7794809-7794670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:11-159
               
               
               Cow position:chr19:13121127-13121269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-161
               
               
               Cow position:chr19:18984314-18984159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:11-170
               
               
               Cow position:chr19:12945145-12945303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:11-170
               
               
               Cow position:chr19:41187995-41187842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:11-173
               
               
               Cow position:chr19:12279887-12279729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-175
               
               
               Cow position:chr19:37420950-37420786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-177
               
               
               Cow position:chr19:25041085-25041241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:11-178
               
               
               Cow position:chr19:31652720-31652553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-179
               
               
               Cow position:chr19:8128467-8128299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-179
               
               
               Cow position:chr19:12202489-12202648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):162, 38

               
               
               Conread position:11-179
               
               
               Cow position:chr19:38732297-38732133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:11-180
               
               
               Cow position:chr19:12469655-12469813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:11-181
               
               
               Cow position:chr19:4339471-4339649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr19:1791535-1791713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr19:3621588-3621421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):18, 53

               
               
               Conread position:11-182
               
               
               Cow position:chr19:23889327-23889496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr19:36777198-36777026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr19:35107772-35107936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr19:35921010-35920842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr19:42564306-42564135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr19:53767569-53767397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr19:10081247-10081064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr19:11194605-11194773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):25, 45

               
               
               Conread position:11-184
               
               
               Cow position:chr19:17355018-17354847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr19:41946880-41946707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):108, 44

               
               
               Conread position:11-189
               
               
               Cow position:chr19:17203517-17203334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):18, 62

               
               
               Conread position:11-191
               
               
               Cow position:chr19:6309763-6309934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-191
               
               
               Cow position:chr19:15438264-15438084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):113, 67

               
               
               Conread position:11-191
               
               
               Cow position:chr19:39622625-39622806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):37, 64

               
               
               Conread position:11-191
               
               
               Cow position:chr19:43373207-43373021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:12-144
               
               
               Cow position:chr19:43878062-43877929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:12-145
               
               
               Cow position:chr19:15368752-15368624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:107
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:12-152
               
               
               Cow position:chr19:19174675-19174536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):127, 35

               
               
               Conread position:12-172
               
               
               Cow position:chr19:12714260-12714101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:12-174
               
               
               Cow position:chr19:21756746-21756909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr19:11646722-11646558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr19:25763263-25763105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr19:28447597-28447432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr19:34608041-34608206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr19:16032878-16032708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr19:26754199-26754026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):103, 82

               
               
               Conread position:12-184
               
               
               Cow position:chr19:729587-729753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr19:2220914-2221086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:141
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr19:12709644-12709821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr19:24956082-24956248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr19:25410696-25410853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr19:30007346-30007181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr19:30227681-30227509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:143
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr19:39585946-39586117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):66, 147

               
               
               Conread position:12-187
               
               
               Cow position:chr19:20622815-20622640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:145
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):6, 16

               
               
               Conread position:12-187
               
               
               Cow position:chr19:37109447-37109613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):151, 74

               
               
               Conread position:12-190
               
               
               Cow position:chr19:30448785-30448607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-191
               
               
               Cow position:chr19:2965709-2965524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):41, 119

               
               
               Conread position:12-191
               
               
               Cow position:chr19:4987608-4987782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:13-148
               
               
               Cow position:chr19:10698553-10698422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:13-183
               
               
               Cow position:chr19:18505009-18505178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:13-183
               
               
               Cow position:chr19:26870015-26869855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:13-183
               
               
               Cow position:chr19:32457801-32457632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):149, 63

               
               
               Conread position:14-153
               
               
               Cow position:chr19:54057172-54057033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-154
               
               
               Cow position:chr19:11172985-11172843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:14-169
               
               
               Cow position:chr19:13933601-13933446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-171
               
               
               Cow position:chr19:1900565-1900727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):5, 128

               
               
               Conread position:14-174
               
               
               Cow position:chr19:42515505-42515347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:14-177
               
               
               Cow position:chr19:1614930-1614771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):36, 45

               
               
               Conread position:14-181
               
               
               Cow position:chr19:26167757-26167922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):160, 10

               
               
               Conread position:14-181
               
               
               Cow position:chr19:39361309-39361138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):41, 103

               
               
               Conread position:14-183
               
               
               Cow position:chr19:12747616-12747784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):60, 145

               
               
               Conread position:14-183
               
               
               Cow position:chr19:38411027-38410856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:14-183
               
               
               Cow position:chr19:55247785-55247623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:14-184
               
               
               Cow position:chr19:52750601-52750769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:14-185
               
               
               Cow position:chr19:37406074-37405906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:14-191
               
               
               Cow position:chr19:44143783-44143952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:14-197
               
               
               Cow position:chr19:24137426-24137239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):88, 18

               
               
               Conread position:15-145
               
               
               Cow position:chr19:3772459-3772588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:15-184
               
               
               Cow position:chr19:21176591-21176752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:15-196
               
               
               Cow position:chr19:29627227-29627412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):41, 70

               
               
               Conread position:17-172
               
               
               Cow position:chr19:52568317-52568474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):50, 10

               
               
               Conread position:17-190
               
               
               Cow position:chr19:7741450-7741618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):74, 33

               
               
               Conread position:18-149
               
               
               Cow position:chr19:12685981-12685854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:18-163
               
               
               Cow position:chr19:53073007-53073153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:18-182
               
               
               Cow position:chr19:19460588-19460432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):99, 37

               
               
               Conread position:18-184
               
               
               Cow position:chr19:3811870-3812026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:18-184
               
               
               Cow position:chr19:41695510-41695672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):73, 13

               
               
               Conread position:18-200
               
               
               Cow position:chr19:14581512-14581336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:18-204
               
               
               Cow position:chr19:14588560-14588372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:18-215
               
               
               Cow position:chr19:52269887-52270084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:19-130
               
               
               Cow position:chr19:7872952-7872841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:88
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:19-131
               
               
               Cow position:chr19:47772774-47772886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:19-148
               
               
               Cow position:chr19:4537110-4537239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:97
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:19-159
               
               
               Cow position:chr19:12240264-12240122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:19-161
               
               
               Cow position:chr19:16870619-16870763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:19-181
               
               
               Cow position:chr19:39664423-39664584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:19-182
               
               
               Cow position:chr19:15091990-15092141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):60, 36

               
               
               Conread position:19-182
               
               
               Cow position:chr19:47987008-47986850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:19-183
               
               
               Cow position:chr19:39758676-39758513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):33, 101

               
               
               Conread position:19-183
               
               
               Cow position:chr19:43525056-43525219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:19-185
               
               
               Cow position:chr19:44757329-44757492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:19-189
               
               
               Cow position:chr19:1553869-1553692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):43, 104

               
               
               Conread position:19-191
               
               
               Cow position:chr19:53378860-53378684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:19-197
               
               
               Cow position:chr19:6280642-6280470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):173, 33

               
               
               Conread position:19-207
               
               
               Cow position:chr19:40051236-40051425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):20, 170

               
               
               Conread position:20-168
               
               
               Cow position:chr19:4449932-4449772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):37, 138

               
               
               Conread position:20-171
               
               
               Cow position:chr19:47363822-47363667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:20-176
               
               
               Cow position:chr19:52728761-52728609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:20-182
               
               
               Cow position:chr19:24693157-24692999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:20-183
               
               
               Cow position:chr19:25166943-25167106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:20-184
               
               
               Cow position:chr19:51285791-51285629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:20-236
               
               
               Cow position:chr19:43560745-43560541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:21-191
               
               
               Cow position:chr19:21335444-21335623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):114, 21

               
               
               Conread position:22-184
               
               
               Cow position:chr19:15362549-15362711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):83, 33

               
               
               Conread position:22-192
               
               
               Cow position:chr19:23394933-23394768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:26-161
               
               
               Cow position:chr19:45923352-45923217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:26-184
               
               
               Cow position:chr19:39254296-39254456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:26-184
               
               
               Cow position:chr19:39384896-39385052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:29-179
               
               
               Cow position:chr19:12698462-12698314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:29-179
               
               
               Cow position:chr19:34819044-34819192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:34-182
               
               
               Cow position:chr19:12132831-12132684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:35-179
               
               
               Cow position:chr19:24637363-24637226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:37-183
               
               
               Cow position:chr19:1897815-1897962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):18, 48

               
               
               Conread position:37-191
               
               
               Cow position:chr19:5406639-5406482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:38-148
               
               
               Cow position:chr19:43985660-43985770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:39-184
               
               
               Cow position:chr19:36845384-36845239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:125
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:40-183
               
               
               Cow position:chr19:42745974-42746118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):72, 16

               
               
               Conread position:41-182
               
               
               Cow position:chr19:39648948-39649085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):137, 23

               
               
               Conread position:47-184
               
               
               Cow position:chr19:30886525-30886385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:48-145
               
               
               Cow position:chr19:54919720-54919819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:84
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:48-174
               
               
               Cow position:chr19:43642669-43642795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-178
               
               
               Cow position:chr19:38625094-38624965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):110, 28

               
               
               Conread position:48-181
               
               
               Cow position:chr19:51397069-51397204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:48-183
               
               
               Cow position:chr19:43202865-43202999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr19:22134026-22134160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):10, 103

               
               
               Conread position:48-184
               
               
               Cow position:chr19:54915567-54915703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-209
               
               
               Cow position:chr19:9733441-9733603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):22, 17

               
               
               Conread position:49-191
               
               
               Cow position:chr19:43292178-43292033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:50-183
               
               
               Cow position:chr19:33469146-33469011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:51-170
               
               
               Cow position:chr19:21723587-21723705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):19, 13

               
               
               Conread position:51-181
               
               
               Cow position:chr19:55724281-55724411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:51-206
               
               
               Cow position:chr19:31998151-31998309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:53-181
               
               
               Cow position:chr19:2042206-2042081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:106
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):8, 99

               
               
               Conread position:53-184
               
               
               Cow position:chr19:11424197-11424326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:53-184
               
               
               Cow position:chr19:33237294-33237163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:55-182
               
               
               Cow position:chr19:19919344-19919470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr19:7675351-7675223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr19:39781637-39781509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):11, 6

               
               
               Conread position:57-179
               
               
               Cow position:chr19:33931743-33931864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:57-184
               
               
               Cow position:chr19:30241814-30241687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:96
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:60-190
               
               
               Cow position:chr19:43706630-43706759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):106, 31

               
               
               Conread position:64-171
               
               
               Cow position:chr19:18921133-18921240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:90
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-179
               
               
               Cow position:chr19:10970986-10971103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:97
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:64-179
               
               
               Cow position:chr19:29115852-29115740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:94
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:64-181
               
               
               Cow position:chr19:29958566-29958686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:97
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:64-183
               
               
               Cow position:chr19:13325376-13325495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:97
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-184
               
               
               Cow position:chr19:4800852-4800731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:98
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:64-184
               
               
               Cow position:chr19:55175371-55175491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):20, 8

               
               
               Conread position:64-192
               
               
               Cow position:chr19:29972146-29972270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):6, 94

               
               
               Conread position:65-184
               
               
               Cow position:chr19:11443099-11442978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:65-187
               
               
               Cow position:chr19:28037797-28037920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:96
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:65-191
               
               
               Cow position:chr19:22153740-22153863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):5, 92

               
               
               Conread position:69-181
               
               
               Cow position:chr19:38630791-38630903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:72-187
               
               
               Cow position:chr19:22798976-22799090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:92
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:74-184
               
               
               Cow position:chr19:30552116-30552006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:75-175
               
               
               Cow position:chr19:5754688-5754788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:84
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:83-184
               
               
               Cow position:chr19:10570557-10570658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:84
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-149
               
               
               Cow position:chr2:11657069-11656926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:1-149
               
               
               Cow position:chr2:84343968-84344115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):124, 7

               
               
               Conread position:1-181
               
               
               Cow position:chr2:3127893-3128074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):74, 7

               
               
               Conread position:1-184
               
               
               Cow position:chr2:85926245-85926059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):62, 7

               
               
               Conread position:2-148
               
               
               Cow position:chr2:41185640-41185494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):9, 114

               
               
               Conread position:2-168
               
               
               Cow position:chr2:6884636-6884476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:2-183
               
               
               Cow position:chr2:12958597-12958414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):25, 121

               
               
               Conread position:3-118
               
               
               Cow position:chr2:56021494-56021378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:95
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):22, 70

               
               
               Conread position:3-121
               
               
               Cow position:chr2:2098132-2098249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:97
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:3-131
               
               
               Cow position:chr2:74012889-74013017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-144
               
               
               Cow position:chr2:55958897-55959042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):17, 67

               
               
               Conread position:3-150
               
               
               Cow position:chr2:39483665-39483518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-161
               
               
               Cow position:chr2:47784965-47784808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:3-165
               
               
               Cow position:chr2:41459276-41459111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:3-173
               
               
               Cow position:chr2:16847363-16847194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):163, 0

               
               
               Conread position:3-176
               
               
               Cow position:chr2:47443451-47443270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):52, 153

               
               
               Conread position:3-178
               
               
               Cow position:chr2:67927613-67927788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-180
               
               
               Cow position:chr2:37973145-37973323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:3-181
               
               
               Cow position:chr2:23713053-23712877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:3-181
               
               
               Cow position:chr2:26694789-26694611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-182
               
               
               Cow position:chr2:3739663-3739842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-182
               
               
               Cow position:chr2:13317763-13317585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:3-182
               
               
               Cow position:chr2:28356530-28356351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-182
               
               
               Cow position:chr2:45505988-45505809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-182
               
               
               Cow position:chr2:46164323-46164497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:3-182
               
               
               Cow position:chr2:66564502-66564681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-182
               
               
               Cow position:chr2:69676348-69676528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr2:2486023-2485846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr2:11000888-11001068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr2:16669649-16669470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:146
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr2:18236060-18236236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):153, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr2:21073945-21074125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr2:22677374-22677194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr2:31673443-31673263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr2:32988749-32988567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr2:33471818-33471986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):144, 50

               
               
               Conread position:3-183
               
               
               Cow position:chr2:33497022-33497202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr2:37791314-37791494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr2:38837335-38837515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr2:41148052-41147870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr2:41622663-41622486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):157, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr2:43131277-43131097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr2:49716907-49717086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr2:53653032-53652853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:145
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr2:54700636-54700458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr2:58310869-58310689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr2:65830159-65830335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr2:72528141-72527962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:146
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr2:79837544-79837724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-184
               
               
               Cow position:chr2:45510372-45510558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):59, 155

               
               
               Conread position:3-184
               
               
               Cow position:chr2:52466270-52466447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):161, 0

               
               
               Conread position:3-184
               
               
               Cow position:chr2:55496115-55496294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:147
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:3-188
               
               
               Cow position:chr2:68292950-68292765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-191
               
               
               Cow position:chr2:3931551-3931730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:3-191
               
               
               Cow position:chr2:27128647-27128835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-191
               
               
               Cow position:chr2:51181596-51181784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-191
               
               
               Cow position:chr2:63050996-63051182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):154, 0

               
               
               Conread position:3-192
               
               
               Cow position:chr2:68438022-68437836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:3-203
               
               
               Cow position:chr2:68064748-68064549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):181, 0

               
               
               Conread position:4-168
               
               
               Cow position:chr2:41950192-41950027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:4-183
               
               
               Cow position:chr2:38886467-38886638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:5-153
               
               
               Cow position:chr2:30127113-30127258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:5-154
               
               
               Cow position:chr2:70771701-70771853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:5-182
               
               
               Cow position:chr2:71437200-71437375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):26, 59

               
               
               Conread position:5-183
               
               
               Cow position:chr2:8843647-8843827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:5-183
               
               
               Cow position:chr2:28820548-28820366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:5-183
               
               
               Cow position:chr2:44986149-44986323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):78, 72

               
               
               Conread position:5-184
               
               
               Cow position:chr2:26500762-26500932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:5-184
               
               
               Cow position:chr2:69419413-69419584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:5-191
               
               
               Cow position:chr2:29779359-29779544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):101, 35

               
               
               Conread position:7-179
               
               
               Cow position:chr2:53500871-53501029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:7-181
               
               
               Cow position:chr2:67595842-67596016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:7-185
               
               
               Cow position:chr2:44007603-44007419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:7-192
               
               
               Cow position:chr2:9543486-9543307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:7-200
               
               
               Cow position:chr2:14626779-14626578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):49, 163

               
               
               Conread position:8-121
               
               
               Cow position:chr2:19530944-19530831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-128
               
               
               Cow position:chr2:1777697-1777818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:95
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:8-130
               
               
               Cow position:chr2:58336049-58336168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-131
               
               
               Cow position:chr2:47123381-47123505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-131
               
               
               Cow position:chr2:67810866-67810988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:8-135
               
               
               Cow position:chr2:1036213-1036339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-135
               
               
               Cow position:chr2:14313591-14313465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:8-136
               
               
               Cow position:chr2:21916559-21916687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-141
               
               
               Cow position:chr2:40508420-40508553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:100
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-144
               
               
               Cow position:chr2:67745423-67745284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):62, 135

               
               
               Conread position:8-147
               
               
               Cow position:chr2:61473913-61474061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:8-147
               
               
               Cow position:chr2:72359457-72359597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr2:1422525-1422385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr2:6267592-6267734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr2:12816809-12816667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr2:50368371-50368228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):91, 63

               
               
               Conread position:8-148
               
               
               Cow position:chr2:58153877-58153741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-149
               
               
               Cow position:chr2:51624486-51624633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-149
               
               
               Cow position:chr2:56338859-56338995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-149
               
               
               Cow position:chr2:63250237-63250370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:8-149
               
               
               Cow position:chr2:78116186-78116327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-151
               
               
               Cow position:chr2:78249913-78249770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-153
               
               
               Cow position:chr2:47165656-47165798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:8-153
               
               
               Cow position:chr2:49345169-49345024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-155
               
               
               Cow position:chr2:19164795-19164937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:8-155
               
               
               Cow position:chr2:47195140-47194991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:8-155
               
               
               Cow position:chr2:81493426-81493569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-156
               
               
               Cow position:chr2:53567658-53567517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-156
               
               
               Cow position:chr2:81294006-81293856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:8-158
               
               
               Cow position:chr2:19595134-19594984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-161
               
               
               Cow position:chr2:19441747-19441581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:8-161
               
               
               Cow position:chr2:36124607-36124457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:8-164
               
               
               Cow position:chr2:22759800-22759957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:8-164
               
               
               Cow position:chr2:24393521-24393679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:8-164
               
               
               Cow position:chr2:26574931-26574781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:8-164
               
               
               Cow position:chr2:28726639-28726484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):123, 63

               
               
               Conread position:8-164
               
               
               Cow position:chr2:73923989-73923833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-167
               
               
               Cow position:chr2:12873581-12873429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-167
               
               
               Cow position:chr2:81244088-81243931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):149, 0

               
               
               Conread position:8-168
               
               
               Cow position:chr2:18621586-18621433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:8-168
               
               
               Cow position:chr2:65603465-65603618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):111, 47

               
               
               Conread position:8-170
               
               
               Cow position:chr2:54883644-54883484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):76, 8

               
               
               Conread position:8-171
               
               
               Cow position:chr2:1923708-1923871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-171
               
               
               Cow position:chr2:8083772-8083610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:8-171
               
               
               Cow position:chr2:12186803-12186644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:8-171
               
               
               Cow position:chr2:45521858-45522021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-171
               
               
               Cow position:chr2:47160122-47159961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:8-171
               
               
               Cow position:chr2:55872345-55872507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:8-171
               
               
               Cow position:chr2:66959852-66959689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):46, 71

               
               
               Conread position:8-171
               
               
               Cow position:chr2:67576276-67576113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-172
               
               
               Cow position:chr2:39590429-39590271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:8-173
               
               
               Cow position:chr2:9476262-9476424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):140, 12

               
               
               Conread position:8-173
               
               
               Cow position:chr2:20919379-20919550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):51, 102

               
               
               Conread position:8-174
               
               
               Cow position:chr2:24669543-24669375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):127, 63

               
               
               Conread position:8-174
               
               
               Cow position:chr2:56102160-56102320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-175
               
               
               Cow position:chr2:37652427-37652258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:8-175
               
               
               Cow position:chr2:46614576-46614411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:8-176
               
               
               Cow position:chr2:35948507-35948670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:8-176
               
               
               Cow position:chr2:37347958-37347794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-176
               
               
               Cow position:chr2:71621875-71622038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-176
               
               
               Cow position:chr2:78379247-78379410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:8-177
               
               
               Cow position:chr2:6311424-6311267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:8-177
               
               
               Cow position:chr2:39067669-39067505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):123, 54

               
               
               Conread position:8-177
               
               
               Cow position:chr2:46202441-46202270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):61, 86

               
               
               Conread position:8-177
               
               
               Cow position:chr2:56837478-56837650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:8-178
               
               
               Cow position:chr2:15298708-15298546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr2:14709953-14710114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr2:33560500-33560666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr2:41462251-41462418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr2:42608239-42608072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr2:44931084-44931256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):60, 43

               
               
               Conread position:8-179
               
               
               Cow position:chr2:49467806-49467635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-180
               
               
               Cow position:chr2:7478759-7478936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):34, 128

               
               
               Conread position:8-180
               
               
               Cow position:chr2:16514029-16513863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:8-180
               
               
               Cow position:chr2:42183539-42183377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:8-180
               
               
               Cow position:chr2:60181855-60182022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr2:5755128-5755290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):154, 46

               
               
               Conread position:8-181
               
               
               Cow position:chr2:36077534-36077355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr2:64473178-64473345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):64, 30

               
               
               Conread position:8-182
               
               
               Cow position:chr2:7194382-7194214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr2:14634357-14634187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr2:19137717-19137887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr2:21049161-21049324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr2:21382675-21382847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):67, 144

               
               
               Conread position:8-182
               
               
               Cow position:chr2:22042728-22042539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):42, 165

               
               
               Conread position:8-182
               
               
               Cow position:chr2:24530537-24530371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr2:26438555-26438721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):83, 25

               
               
               Conread position:8-182
               
               
               Cow position:chr2:39059251-39059088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr2:46227639-46227462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):38, 23

               
               
               Conread position:8-182
               
               
               Cow position:chr2:50353062-50352896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr2:65932142-65931968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):9, 43

               
               
               Conread position:8-182
               
               
               Cow position:chr2:84480326-84480498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr2:85794795-85794966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr2:9103432-9103257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr2:9725926-9726096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):46, 59

               
               
               Conread position:8-183
               
               
               Cow position:chr2:10505438-10505611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr2:10628358-10628533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):66, 153

               
               
               Conread position:8-183
               
               
               Cow position:chr2:13369831-13369656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:143
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr2:15734593-15734418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr2:24218043-24218214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr2:31749793-31749967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr2:33250914-33251087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr2:38162627-38162797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr2:38651680-38651516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr2:38954007-38953825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr2:39363183-39363004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:146
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr2:39566522-39566692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):27, 49

               
               
               Conread position:8-183
               
               
               Cow position:chr2:41915254-41915421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):66, 38

               
               
               Conread position:8-183
               
               
               Cow position:chr2:43474354-43474177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):123, 30

               
               
               Conread position:8-183
               
               
               Cow position:chr2:44620762-44620588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr2:47977868-47978043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr2:50013534-50013360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):83, 109

               
               
               Conread position:8-183
               
               
               Cow position:chr2:50821038-50821219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr2:63940973-63940798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr2:65059217-65059040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):54, 95

               
               
               Conread position:8-183
               
               
               Cow position:chr2:70847089-70847260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr2:70908159-70908323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):134, 44

               
               
               Conread position:8-183
               
               
               Cow position:chr2:72342679-72342855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr2:76762394-76762218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:8-183
               
               
               Cow position:chr2:80848257-80848085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr2:82957855-82957680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr2:2827918-2827744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr2:6039189-6039014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr2:11217972-11217793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr2:13582758-13582585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):27, 59

               
               
               Conread position:8-184
               
               
               Cow position:chr2:17940111-17940285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr2:18997890-18997720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr2:19211887-19212054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr2:22370774-22370942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr2:25922585-25922411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):80, 30

               
               
               Conread position:8-184
               
               
               Cow position:chr2:27337604-27337774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr2:28710835-28710998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr2:29394832-29395008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:148
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr2:30351530-30351705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr2:32431564-32431734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr2:33988133-33988316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr2:35935063-35934881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr2:39815122-39815283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr2:40410320-40410146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):60, 18

               
               
               Conread position:8-184
               
               
               Cow position:chr2:40597746-40597579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr2:40728533-40728351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr2:41007369-41007540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):103, 15

               
               
               Conread position:8-184
               
               
               Cow position:chr2:43835386-43835559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):125, 63

               
               
               Conread position:8-184
               
               
               Cow position:chr2:45478428-45478596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr2:46014943-46014767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:144
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr2:46119595-46119763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr2:46351609-46351781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr2:54968183-54968009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr2:56003409-56003238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr2:60368507-60368317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr2:60910357-60910191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr2:67047595-67047419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):172, 107

               
               
               Conread position:8-184
               
               
               Cow position:chr2:67386297-67386472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):160, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr2:69579502-69579678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr2:76110566-76110397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr2:76861277-76861455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr2:80177424-80177586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr2:81232933-81233111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):71, 149

               
               
               Conread position:8-185
               
               
               Cow position:chr2:14848022-14847866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-185
               
               
               Cow position:chr2:29160082-29159906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:8-185
               
               
               Cow position:chr2:45565875-45565704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):82, 27

               
               
               Conread position:8-185
               
               
               Cow position:chr2:67480161-67479974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:8-185
               
               
               Cow position:chr2:73353980-73353796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):43, 154

               
               
               Conread position:8-187
               
               
               Cow position:chr2:2437433-2437603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:8-187
               
               
               Cow position:chr2:70674914-70674726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):42, 84

               
               
               Conread position:8-191
               
               
               Cow position:chr2:12682485-12682668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:145
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr2:13062034-13062224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):46, 27

               
               
               Conread position:8-191
               
               
               Cow position:chr2:15348570-15348387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr2:17328919-17328744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr2:40703497-40703672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr2:41248739-41248565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr2:43995107-43994929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):132, 47

               
               
               Conread position:8-191
               
               
               Cow position:chr2:44022629-44022812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr2:44051482-44051305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr2:54790456-54790275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):112, 69

               
               
               Conread position:8-191
               
               
               Cow position:chr2:69350394-69350571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr2:86540980-86541158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):69, 128

               
               
               Conread position:8-192
               
               
               Cow position:chr2:45138269-45138442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-197
               
               
               Cow position:chr2:24594035-24593856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):181, 47

               
               
               Conread position:8-201
               
               
               Cow position:chr2:36117423-36117233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:8-205
               
               
               Cow position:chr2:4921759-4921951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:8-209
               
               
               Cow position:chr2:46378618-46378813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:9-160
               
               
               Cow position:chr2:65988270-65988123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:9-163
               
               
               Cow position:chr2:34989204-34989348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):123, 41

               
               
               Conread position:9-169
               
               
               Cow position:chr2:44215673-44215519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:9-171
               
               
               Cow position:chr2:30161713-30161875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:9-172
               
               
               Cow position:chr2:46110872-46111040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):55, 157

               
               
               Conread position:9-177
               
               
               Cow position:chr2:38658619-38658779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):25, 45

               
               
               Conread position:9-179
               
               
               Cow position:chr2:53491283-53491445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):89, 41

               
               
               Conread position:9-182
               
               
               Cow position:chr2:36575908-36575738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:9-183
               
               
               Cow position:chr2:47090938-47090764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:9-183
               
               
               Cow position:chr2:74249050-74249226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:9-184
               
               
               Cow position:chr2:30179737-30179911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:9-184
               
               
               Cow position:chr2:59396878-59397052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:144
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:9-184
               
               
               Cow position:chr2:64323410-64323239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):154, 51

               
               
               Conread position:9-187
               
               
               Cow position:chr2:5300771-5300594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:9-191
               
               
               Cow position:chr2:387603-387782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):141, 46

               
               
               Conread position:9-191
               
               
               Cow position:chr2:5604696-5604519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:9-192
               
               
               Cow position:chr2:14349946-14349760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:9-192
               
               
               Cow position:chr2:21380231-21380405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:9-194
               
               
               Cow position:chr2:65554629-65554814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):180, 22

               
               
               Conread position:10-131
               
               
               Cow position:chr2:1205477-1205358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:97
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:10-156
               
               
               Cow position:chr2:42897840-42897694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:10-171
               
               
               Cow position:chr2:80961790-80961952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:10-172
               
               
               Cow position:chr2:69142677-69142526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):123, 51

               
               
               Conread position:10-179
               
               
               Cow position:chr2:20791251-20791429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:10-182
               
               
               Cow position:chr2:43591202-43591370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):135, 52

               
               
               Conread position:10-183
               
               
               Cow position:chr2:31355872-31355699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:10-184
               
               
               Cow position:chr2:18243709-18243540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:10-184
               
               
               Cow position:chr2:30954419-30954596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:147
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:10-184
               
               
               Cow position:chr2:39514210-39514036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):60, 25

               
               
               Conread position:10-198
               
               
               Cow position:chr2:22371535-22371341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):132, 81

               
               
               Conread position:10-201
               
               
               Cow position:chr2:16889885-16890068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:10-249
               
               
               Cow position:chr2:78256462-78256233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:11-127
               
               
               Cow position:chr2:84501197-84501312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:93
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:11-131
               
               
               Cow position:chr2:3728194-3728080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:11-146
               
               
               Cow position:chr2:55526603-55526735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:11-146
               
               
               Cow position:chr2:56771334-56771468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):34, 100

               
               
               Conread position:11-148
               
               
               Cow position:chr2:38884253-38884386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:11-149
               
               
               Cow position:chr2:45619226-45619360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:11-154
               
               
               Cow position:chr2:46342979-46343117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:11-164
               
               
               Cow position:chr2:70449192-70449047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):28, 52

               
               
               Conread position:11-165
               
               
               Cow position:chr2:1364426-1364579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:11-167
               
               
               Cow position:chr2:66561867-66562023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-168
               
               
               Cow position:chr2:12949993-12950148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-169
               
               
               Cow position:chr2:485746-485592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:11-171
               
               
               Cow position:chr2:44198051-44197888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):62, 53

               
               
               Conread position:11-173
               
               
               Cow position:chr2:46138323-46138490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:11-174
               
               
               Cow position:chr2:73981800-73981642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):149, 44

               
               
               Conread position:11-177
               
               
               Cow position:chr2:80235180-80235347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):66, 134

               
               
               Conread position:11-179
               
               
               Cow position:chr2:26361929-26361760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):80, 60

               
               
               Conread position:11-179
               
               
               Cow position:chr2:37615115-37614947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-179
               
               
               Cow position:chr2:61480762-61480594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-179
               
               
               Cow position:chr2:80116268-80116103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:11-181
               
               
               Cow position:chr2:25283284-25283119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:11-181
               
               
               Cow position:chr2:78360581-78360413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):39, 53

               
               
               Conread position:11-182
               
               
               Cow position:chr2:1709138-1708976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr2:15872101-15871941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr2:16668105-16667940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr2:19017625-19017454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr2:21410400-21410222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr2:22371784-22371949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr2:40257246-40257409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr2:42801206-42801043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr2:45499032-45499199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr2:45542231-45542396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr2:46188926-46189093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr2:80275122-80275290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr2:6304116-6304290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):151, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr2:10319779-10319953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):65, 73

               
               
               Conread position:11-183
               
               
               Cow position:chr2:12686623-12686788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr2:14218825-14218653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr2:14826450-14826278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr2:29290145-29290311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr2:46204690-46204518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr2:49428555-49428383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):81, 102

               
               
               Conread position:11-183
               
               
               Cow position:chr2:49862827-49862656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr2:56350741-56350915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr2:58868989-58869167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):158, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr2:65587327-65587158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):80, 57

               
               
               Conread position:11-183
               
               
               Cow position:chr2:68328681-68328850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):151, 57

               
               
               Conread position:11-183
               
               
               Cow position:chr2:72315641-72315810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr2:39095528-39095357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr2:43990941-43990773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr2:46053644-46053471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr2:67953155-67952982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-191
               
               
               Cow position:chr2:24271385-24271222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):44, 59

               
               
               Conread position:11-191
               
               
               Cow position:chr2:43136271-43136451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):148, 144

               
               
               Conread position:11-191
               
               
               Cow position:chr2:81481016-81480844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:12-144
               
               
               Cow position:chr2:36377031-36376899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-146
               
               
               Cow position:chr2:48199265-48199395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:103
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-164
               
               
               Cow position:chr2:43139485-43139636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):144, 59

               
               
               Conread position:12-168
               
               
               Cow position:chr2:47189683-47189531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:12-171
               
               
               Cow position:chr2:81913169-81913012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:12-173
               
               
               Cow position:chr2:30203051-30203209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):150, 118

               
               
               Conread position:12-174
               
               
               Cow position:chr2:21171772-21171615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-174
               
               
               Cow position:chr2:75637558-75637725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):52, 98

               
               
               Conread position:12-176
               
               
               Cow position:chr2:37891313-37891482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:12-177
               
               
               Cow position:chr2:19320173-19320007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:12-178
               
               
               Cow position:chr2:41158129-41157975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:12-178
               
               
               Cow position:chr2:55004453-55004294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:12-178
               
               
               Cow position:chr2:64465607-64465769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:12-179
               
               
               Cow position:chr2:15058892-15059056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:12-179
               
               
               Cow position:chr2:17492349-17492512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:12-179
               
               
               Cow position:chr2:79663286-79663117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:12-180
               
               
               Cow position:chr2:1317712-1317880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-181
               
               
               Cow position:chr2:69199152-69199316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:12-181
               
               
               Cow position:chr2:71486945-71486782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr2:79791-79955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr2:13468386-13468218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr2:16428232-16428393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr2:24859174-24859013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):150, 30

               
               
               Conread position:12-182
               
               
               Cow position:chr2:46120475-46120637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr2:46162122-46161960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr2:48837117-48837285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr2:67302188-67302021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr2:75227372-75227204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):153, 34

               
               
               Conread position:12-183
               
               
               Cow position:chr2:13580404-13580238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr2:16839809-16839638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):71, 82

               
               
               Conread position:12-183
               
               
               Cow position:chr2:46230150-46230322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):35, 125

               
               
               Conread position:12-183
               
               
               Cow position:chr2:47065282-47065111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):66, 140

               
               
               Conread position:12-183
               
               
               Cow position:chr2:50566107-50565936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr2:76313696-76313866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr2:76562292-76562108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr2:46125969-46126134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr2:52596564-52596724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):54, 32

               
               
               Conread position:12-185
               
               
               Cow position:chr2:69250497-69250665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):64, 37

               
               
               Conread position:12-188
               
               
               Cow position:chr2:82374605-82374437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):66, 102

               
               
               Conread position:12-191
               
               
               Cow position:chr2:39371583-39371411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:12-191
               
               
               Cow position:chr2:42970276-42970108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:12-191
               
               
               Cow position:chr2:57565164-57565341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:12-197
               
               
               Cow position:chr2:78669750-78669941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):54, 127

               
               
               Conread position:12-201
               
               
               Cow position:chr2:69109175-69109364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):13, 182

               
               
               Conread position:13-172
               
               
               Cow position:chr2:21950143-21949988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:13-173
               
               
               Cow position:chr2:46033505-46033347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:13-176
               
               
               Cow position:chr2:41040538-41040698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):147, 0

               
               
               Conread position:13-179
               
               
               Cow position:chr2:77941504-77941662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:13-181
               
               
               Cow position:chr2:83273506-83273665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:13-191
               
               
               Cow position:chr2:21003342-21003168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):31, 7

               
               
               Conread position:14-147
               
               
               Cow position:chr2:46968025-46968154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:14-148
               
               
               Cow position:chr2:61681666-61681533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:14-154
               
               
               Cow position:chr2:2031841-2031980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:14-161
               
               
               Cow position:chr2:82609596-82609743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:109
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-177
               
               
               Cow position:chr2:34492624-34492468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:14-182
               
               
               Cow position:chr2:19494382-19494217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):67, 41

               
               
               Conread position:14-182
               
               
               Cow position:chr2:28301369-28301208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:14-182
               
               
               Cow position:chr2:45642320-45642482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):107, 41

               
               
               Conread position:14-183
               
               
               Cow position:chr2:13354848-13354678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):90, 65

               
               
               Conread position:14-183
               
               
               Cow position:chr2:32660348-32660179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-183
               
               
               Cow position:chr2:46317041-46316874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:14-183
               
               
               Cow position:chr2:62200927-62200758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-184
               
               
               Cow position:chr2:1304120-1303950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-184
               
               
               Cow position:chr2:1409966-1410141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:14-184
               
               
               Cow position:chr2:16505300-16505475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):37, 75

               
               
               Conread position:14-184
               
               
               Cow position:chr2:50766644-50766474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):61, 147

               
               
               Conread position:15-183
               
               
               Cow position:chr2:48525369-48525540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:15-183
               
               
               Cow position:chr2:73129318-73129150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:16-169
               
               
               Cow position:chr2:2754848-2754998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:17-219
               
               
               Cow position:chr2:53575821-53576025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):158, 123

               
               
               Conread position:18-144
               
               
               Cow position:chr2:38700215-38700341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:18-149
               
               
               Cow position:chr2:44313552-44313683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:18-155
               
               
               Cow position:chr2:30384101-30384238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):45, 54

               
               
               Conread position:18-171
               
               
               Cow position:chr2:74078946-74079098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:18-178
               
               
               Cow position:chr2:12139381-12139546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:18-182
               
               
               Cow position:chr2:9062844-9062680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:18-183
               
               
               Cow position:chr2:42255594-42255437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:18-184
               
               
               Cow position:chr2:53430882-53430720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:18-191
               
               
               Cow position:chr2:26805946-26806119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):38, 142

               
               
               Conread position:19-145
               
               
               Cow position:chr2:27599335-27599459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:19-148
               
               
               Cow position:chr2:45907715-45907587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:19-148
               
               
               Cow position:chr2:68998482-68998355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-148
               
               
               Cow position:chr2:74070494-74070369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-157
               
               
               Cow position:chr2:7908982-7908845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:19-160
               
               
               Cow position:chr2:49931993-49931855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-161
               
               
               Cow position:chr2:44063611-44063752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:19-165
               
               
               Cow position:chr2:37113034-37113176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:19-167
               
               
               Cow position:chr2:54931674-54931821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:19-173
               
               
               Cow position:chr2:4016688-4016833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-175
               
               
               Cow position:chr2:32840451-32840602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):114, 36

               
               
               Conread position:19-176
               
               
               Cow position:chr2:56937844-56937689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:19-177
               
               
               Cow position:chr2:36963688-36963529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):147, 152

               
               
               Conread position:19-177
               
               
               Cow position:chr2:42476067-42476222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:19-178
               
               
               Cow position:chr2:16109580-16109732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):24, 61

               
               
               Conread position:19-179
               
               
               Cow position:chr2:21369125-21368955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):31, 60

               
               
               Conread position:19-181
               
               
               Cow position:chr2:16488156-16487993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):39, 51

               
               
               Conread position:19-182
               
               
               Cow position:chr2:11631689-11631529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):98, 36

               
               
               Conread position:19-182
               
               
               Cow position:chr2:30642485-30642660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:19-182
               
               
               Cow position:chr2:37224233-37224073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:19-183
               
               
               Cow position:chr2:4644436-4644273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):153, 0

               
               
               Conread position:19-183
               
               
               Cow position:chr2:20900297-20900461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:19-183
               
               
               Cow position:chr2:32048647-32048482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:19-183
               
               
               Cow position:chr2:32264227-32264390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):56, 36

               
               
               Conread position:19-183
               
               
               Cow position:chr2:37121422-37121266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-184
               
               
               Cow position:chr2:15219281-15219114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:19-184
               
               
               Cow position:chr2:27173525-27173370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-184
               
               
               Cow position:chr2:31460173-31460330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:19-184
               
               
               Cow position:chr2:35988453-35988618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:19-184
               
               
               Cow position:chr2:39350326-39350492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):139, 49

               
               
               Conread position:19-184
               
               
               Cow position:chr2:39642917-39642751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:139
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:19-184
               
               
               Cow position:chr2:57802315-57802488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:20-154
               
               
               Cow position:chr2:16409635-16409503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:20-155
               
               
               Cow position:chr2:39501198-39501069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:20-161
               
               
               Cow position:chr2:38619271-38619412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:20-173
               
               
               Cow position:chr2:43790262-43790112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:20-179
               
               
               Cow position:chr2:24722106-24722265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:20-179
               
               
               Cow position:chr2:50913853-50914006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:20-182
               
               
               Cow position:chr2:44170719-44170562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:20-184
               
               
               Cow position:chr2:19294754-19294595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):49, 100

               
               
               Conread position:20-184
               
               
               Cow position:chr2:46312601-46312441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:20-191
               
               
               Cow position:chr2:52484799-52484978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):111, 35

               
               
               Conread position:21-164
               
               
               Cow position:chr2:75190826-75190684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):127, 20

               
               
               Conread position:21-183
               
               
               Cow position:chr2:84498108-84497944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:25-184
               
               
               Cow position:chr2:46383302-46383465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:27-171
               
               
               Cow position:chr2:39525629-39525476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:27-182
               
               
               Cow position:chr2:62743855-62744005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:27-184
               
               
               Cow position:chr2:68870847-68870695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:29-174
               
               
               Cow position:chr2:23301888-23301743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):38, 140

               
               
               Conread position:29-191
               
               
               Cow position:chr2:31500157-31499992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:29-192
               
               
               Cow position:chr2:38205602-38205765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):48, 26

               
               
               Conread position:29-196
               
               
               Cow position:chr2:46346673-46346841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):35, 158

               
               
               Conread position:30-171
               
               
               Cow position:chr2:20940837-20940701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:30-172
               
               
               Cow position:chr2:38576326-38576467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:30-182
               
               
               Cow position:chr2:1335540-1335692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:31-154
               
               
               Cow position:chr2:5815865-5815988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:32-184
               
               
               Cow position:chr2:62861745-62861588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:33-135
               
               
               Cow position:chr2:81894028-81894128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:85
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:34-177
               
               
               Cow position:chr2:29860149-29860014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:34-184
               
               
               Cow position:chr2:192319-192465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:34-184
               
               
               Cow position:chr2:55632926-55632777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:35-175
               
               
               Cow position:chr2:46300763-46300621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:35-179
               
               
               Cow position:chr2:57776497-57776351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:35-183
               
               
               Cow position:chr2:50818800-50818950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:35-184
               
               
               Cow position:chr2:84970559-84970713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:35-191
               
               
               Cow position:chr2:27187677-27187522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):18, 37

               
               
               Conread position:37-183
               
               
               Cow position:chr2:46054996-46055140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:37-184
               
               
               Cow position:chr2:56846895-56846749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:38-181
               
               
               Cow position:chr2:2689902-2689757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:38-184
               
               
               Cow position:chr2:26851309-26851166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:39-179
               
               
               Cow position:chr2:53575544-53575398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:39-184
               
               
               Cow position:chr2:23270785-23270932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:39-184
               
               
               Cow position:chr2:44025521-44025381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:40-184
               
               
               Cow position:chr2:69823734-69823590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):103, 22

               
               
               Conread position:41-182
               
               
               Cow position:chr2:44179138-44178998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:41-201
               
               
               Cow position:chr2:41461513-41461354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):20, 14

               
               
               Conread position:42-171
               
               
               Cow position:chr2:38949978-38950107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:43-183
               
               
               Cow position:chr2:38969367-38969506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):16, 26

               
               
               Conread position:44-182
               
               
               Cow position:chr2:38640464-38640326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:44-183
               
               
               Cow position:chr2:19394693-19394554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-156
               
               
               Cow position:chr2:45470412-45470304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:88
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-162
               
               
               Cow position:chr2:39663505-39663391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:91
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-167
               
               
               Cow position:chr2:47073323-47073205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:95
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:48-175
               
               
               Cow position:chr2:41385758-41385881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:48-178
               
               
               Cow position:chr2:52398453-52398323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-179
               
               
               Cow position:chr2:44032265-44032393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):43, 109

               
               
               Conread position:48-181
               
               
               Cow position:chr2:48130760-48130625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):22, 57

               
               
               Conread position:48-182
               
               
               Cow position:chr2:39237550-39237416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):28, 74

               
               
               Conread position:48-182
               
               
               Cow position:chr2:39798379-39798245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-182
               
               
               Cow position:chr2:72309874-72310008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr2:39263624-39263491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr2:44216571-44216435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr2:60260854-60260991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:103
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr2:64773525-64773386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:48-186
               
               
               Cow position:chr2:44021876-44021741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:48-187
               
               
               Cow position:chr2:5130318-5130456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):55, 14

               
               
               Conread position:48-191
               
               
               Cow position:chr2:36017277-36017415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:49-184
               
               
               Cow position:chr2:35023963-35023825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):113, 27

               
               
               Conread position:49-184
               
               
               Cow position:chr2:39418953-39419089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:49-184
               
               
               Cow position:chr2:46733797-46733931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:101
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:51-179
               
               
               Cow position:chr2:7383555-7383682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:55-184
               
               
               Cow position:chr2:70896165-70896035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:56-182
               
               
               Cow position:chr2:45624143-45624017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-183
               
               
               Cow position:chr2:50368100-50367973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr2:12558402-12558536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):21, 28

               
               
               Conread position:56-184
               
               
               Cow position:chr2:41955014-41954887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr2:44081566-44081438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):22, 70

               
               
               Conread position:56-184
               
               
               Cow position:chr2:66480057-66480185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-191
               
               
               Cow position:chr2:72183362-72183498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:56-192
               
               
               Cow position:chr2:21671644-21671508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-203
               
               
               Cow position:chr2:67942221-67942075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):130, 137

               
               
               Conread position:57-183
               
               
               Cow position:chr2:46293923-46294044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:57-184
               
               
               Cow position:chr2:40058611-40058738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:57-192
               
               
               Cow position:chr2:16018105-16018239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:59-172
               
               
               Cow position:chr2:46190356-46190243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:59-178
               
               
               Cow position:chr2:30788803-30788687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:95
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:59-184
               
               
               Cow position:chr2:44005081-44004958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:59-184
               
               
               Cow position:chr2:58135266-58135391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:59-184
               
               
               Cow position:chr2:61421042-61421167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:59-184
               
               
               Cow position:chr2:81388816-81388694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:59-191
               
               
               Cow position:chr2:28303445-28303313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-183
               
               
               Cow position:chr2:46971247-46971124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:63-178
               
               
               Cow position:chr2:43975706-43975821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:63-184
               
               
               Cow position:chr2:13013213-13013091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:64-155
               
               
               Cow position:chr2:31123002-31122912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:92
               
               
               Alignm identity:79
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:64-161
               
               
               Cow position:chr2:44022971-44023067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:85
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:64-170
               
               
               Cow position:chr2:21373327-21373220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:87
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:64-171
               
               
               Cow position:chr2:39242476-39242369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:88
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-177
               
               
               Cow position:chr2:59974518-59974632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):98, 81

               
               
               Conread position:64-184
               
               
               Cow position:chr2:12332651-12332531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-184
               
               
               Cow position:chr2:65890505-65890621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:64-184
               
               
               Cow position:chr2:80963528-80963645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):13, 93

               
               
               Conread position:65-184
               
               
               Cow position:chr2:45537070-45537186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:65-201
               
               
               Cow position:chr2:43123459-43123323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:66-154
               
               
               Cow position:chr2:68397486-68397574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:89
               
               
               Alignm identity:78
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:66-179
               
               
               Cow position:chr2:71163448-71163561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:91
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:66-184
               
               
               Cow position:chr2:7524013-7524131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:66-184
               
               
               Cow position:chr2:42192556-42192439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:67-193
               
               
               Cow position:chr2:46230645-46230771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:68-201
               
               
               Cow position:chr2:26102884-26102752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:69-181
               
               
               Cow position:chr2:77969413-77969525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:92
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:69-183
               
               
               Cow position:chr2:13271303-13271416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:93
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:69-198
               
               
               Cow position:chr2:13645434-13645307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:70-191
               
               
               Cow position:chr2:82262260-82262382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:70-205
               
               
               Cow position:chr2:40431686-40431819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:72-175
               
               
               Cow position:chr2:19031026-19031129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:73-183
               
               
               Cow position:chr2:61181740-61181632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:79-181
               
               
               Cow position:chr2:22113591-22113692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:85
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:79-189
               
               
               Cow position:chr2:46169992-46170102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:92
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-176
               
               
               Cow position:chr20:20590082-20590250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:1-184
               
               
               Cow position:chr20:22959123-22959304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:1-185
               
               
               Cow position:chr20:39268862-39269043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:1-190
               
               
               Cow position:chr20:3035561-3035370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):77, 7

               
               
               Conread position:2-168
               
               
               Cow position:chr20:30710411-30710574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):18, 82

               
               
               Conread position:2-188
               
               
               Cow position:chr20:37609845-37609662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:3-142
               
               
               Cow position:chr20:13023281-13023417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:3-153
               
               
               Cow position:chr20:29768733-29768577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:3-153
               
               
               Cow position:chr20:41089571-41089722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:3-155
               
               
               Cow position:chr20:41514987-41514834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:3-164
               
               
               Cow position:chr20:297783-297945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):78, 145

               
               
               Conread position:3-170
               
               
               Cow position:chr20:20459813-20459649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:3-178
               
               
               Cow position:chr20:10188496-10188324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:3-178
               
               
               Cow position:chr20:17370024-17370202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):57, 87

               
               
               Conread position:3-179
               
               
               Cow position:chr20:12581735-12581906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:3-181
               
               
               Cow position:chr20:29990224-29990401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:3-181
               
               
               Cow position:chr20:30755504-30755326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-182
               
               
               Cow position:chr20:14897961-14897782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr20:9033995-9034172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr20:19328619-19328432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr20:28296519-28296337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:3-184
               
               
               Cow position:chr20:381912-382088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:3-184
               
               
               Cow position:chr20:7934499-7934327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:3-184
               
               
               Cow position:chr20:35176553-35176734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-185
               
               
               Cow position:chr20:7806345-7806527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-191
               
               
               Cow position:chr20:25021652-25021464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:151
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):81, 121

               
               
               Conread position:3-191
               
               
               Cow position:chr20:36239471-36239283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-195
               
               
               Cow position:chr20:30639557-30639751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:5-183
               
               
               Cow position:chr20:23850840-23850665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):79, 24

               
               
               Conread position:7-161
               
               
               Cow position:chr20:25474773-25474619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):58, 87

               
               
               Conread position:7-164
               
               
               Cow position:chr20:22851693-22851541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:7-182
               
               
               Cow position:chr20:38090133-38089958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:7-184
               
               
               Cow position:chr20:360960-361143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):44, 141

               
               
               Conread position:8-115
               
               
               Cow position:chr20:30817737-30817630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:86
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-127
               
               
               Cow position:chr20:29754994-29754876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:95
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:8-134
               
               
               Cow position:chr20:17524491-17524365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-135
               
               
               Cow position:chr20:12033407-12033530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-135
               
               
               Cow position:chr20:13876492-13876619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-135
               
               
               Cow position:chr20:18500746-18500619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-135
               
               
               Cow position:chr20:36741680-36741555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:8-138
               
               
               Cow position:chr20:23506153-23506024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:8-149
               
               
               Cow position:chr20:23879890-23880029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):113, 63

               
               
               Conread position:8-150
               
               
               Cow position:chr20:26790384-26790534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-150
               
               
               Cow position:chr20:36097739-36097597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-155
               
               
               Cow position:chr20:16977621-16977772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:8-156
               
               
               Cow position:chr20:33434943-33435084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:8-161
               
               
               Cow position:chr20:7132842-7132692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-161
               
               
               Cow position:chr20:27323485-27323332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-161
               
               
               Cow position:chr20:34848119-34847972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-167
               
               
               Cow position:chr20:21018638-21018484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:8-168
               
               
               Cow position:chr20:8578467-8578308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:8-169
               
               
               Cow position:chr20:19746187-19746029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):23, 46

               
               
               Conread position:8-170
               
               
               Cow position:chr20:25464830-25464988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-170
               
               
               Cow position:chr20:31468440-31468604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):48, 147

               
               
               Conread position:8-171
               
               
               Cow position:chr20:35589467-35589628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:8-172
               
               
               Cow position:chr20:2823095-2822925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:8-172
               
               
               Cow position:chr20:36842803-36842631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):49, 124

               
               
               Conread position:8-173
               
               
               Cow position:chr20:4891902-4892065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-173
               
               
               Cow position:chr20:26040881-26041044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:8-175
               
               
               Cow position:chr20:18831664-18831826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):37, 49

               
               
               Conread position:8-175
               
               
               Cow position:chr20:20202436-20202271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-176
               
               
               Cow position:chr20:23846449-23846614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):129, 47

               
               
               Conread position:8-178
               
               
               Cow position:chr20:8821523-8821687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:8-178
               
               
               Cow position:chr20:16291907-16291737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr20:14980291-14980461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):128, 55

               
               
               Conread position:8-179
               
               
               Cow position:chr20:31927244-31927414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:8-180
               
               
               Cow position:chr20:23935962-23936137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):47, 116

               
               
               Conread position:8-181
               
               
               Cow position:chr20:20739055-20739240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):49, 11

               
               
               Conread position:8-181
               
               
               Cow position:chr20:28249399-28249226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr20:32636117-32636281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr20:34097732-34097908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:147
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr20:37273209-37273044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr20:5078852-5078672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr20:7155393-7155226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr20:7738018-7738186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr20:14620090-14620258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):108, 63

               
               
               Conread position:8-182
               
               
               Cow position:chr20:19834615-19834785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):66, 17

               
               
               Conread position:8-182
               
               
               Cow position:chr20:33076605-33076778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr20:38515005-38514824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):56, 103

               
               
               Conread position:8-183
               
               
               Cow position:chr20:15530079-15529905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr20:20898373-20898546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr20:21345655-21345475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr20:24883144-24883323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr20:34202858-34202679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr20:37358075-37357902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):149, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr20:4334322-4334487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):82, 48

               
               
               Conread position:8-184
               
               
               Cow position:chr20:4945034-4945208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):57, 125

               
               
               Conread position:8-184
               
               
               Cow position:chr20:5703691-5703514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:146
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr20:6240304-6240477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr20:7416944-7417124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr20:9433798-9433630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr20:10200565-10200389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:143
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr20:14283139-14282963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr20:16941066-16941244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):63, 41

               
               
               Conread position:8-184
               
               
               Cow position:chr20:17251935-17251761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):52, 41

               
               
               Conread position:8-184
               
               
               Cow position:chr20:20934518-20934689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr20:20967535-20967364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):16, 48

               
               
               Conread position:8-184
               
               
               Cow position:chr20:20984213-20984035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr20:21291883-21291703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr20:21721436-21721253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):48, 12

               
               
               Conread position:8-184
               
               
               Cow position:chr20:21941645-21941477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr20:28594509-28594329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):51, 31

               
               
               Conread position:8-184
               
               
               Cow position:chr20:29845271-29845094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):50, 82

               
               
               Conread position:8-184
               
               
               Cow position:chr20:33067143-33067317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr20:34251453-34251630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr20:36779503-36779686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr20:37919157-37919327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):82, 47

               
               
               Conread position:8-184
               
               
               Cow position:chr20:40303666-40303840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):46, 149

               
               
               Conread position:8-187
               
               
               Cow position:chr20:19201750-19201571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-188
               
               
               Cow position:chr20:35442065-35442243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:145
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr20:354682-354861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):148, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr20:6054291-6054473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr20:7441923-7442096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr20:11499219-11499049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr20:12126085-12126268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr20:14880002-14879825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-192
               
               
               Cow position:chr20:34207188-34207004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-198
               
               
               Cow position:chr20:19237287-19237102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):177, 45

               
               
               Conread position:8-199
               
               
               Cow position:chr20:21325541-21325354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-201
               
               
               Cow position:chr20:9266884-9267077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):42, 30

               
               
               Conread position:9-156
               
               
               Cow position:chr20:32555498-32555361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:9-173
               
               
               Cow position:chr20:2298580-2298732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:10-183
               
               
               Cow position:chr20:14433206-14433378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):156, 70

               
               
               Conread position:10-183
               
               
               Cow position:chr20:18488141-18487971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):146, 0

               
               
               Conread position:10-183
               
               
               Cow position:chr20:35741985-35741812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:10-191
               
               
               Cow position:chr20:14759460-14759629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:11-155
               
               
               Cow position:chr20:35605416-35605281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:11-168
               
               
               Cow position:chr20:8679447-8679603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:11-170
               
               
               Cow position:chr20:17733343-17733505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:11-171
               
               
               Cow position:chr20:37242484-37242324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-172
               
               
               Cow position:chr20:6473948-6473788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:11-178
               
               
               Cow position:chr20:39417689-39417852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:11-179
               
               
               Cow position:chr20:15766325-15766158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):140, 55

               
               
               Conread position:11-179
               
               
               Cow position:chr20:34083934-34083763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):67, 85

               
               
               Conread position:11-180
               
               
               Cow position:chr20:11611894-11611726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:11-180
               
               
               Cow position:chr20:14755630-14755792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-181
               
               
               Cow position:chr20:25953480-25953310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):116, 72

               
               
               Conread position:11-181
               
               
               Cow position:chr20:28935429-28935592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr20:10209020-10208853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):158, 43

               
               
               Conread position:11-182
               
               
               Cow position:chr20:14807096-14806932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr20:1139552-1139723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr20:4755621-4755790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):147, 43

               
               
               Conread position:11-183
               
               
               Cow position:chr20:5814782-5814611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr20:5950427-5950599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr20:6248386-6248557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr20:14739606-14739775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr20:20124818-20124988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr20:31845075-31845241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr20:2742921-2743094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):51, 61

               
               
               Conread position:11-184
               
               
               Cow position:chr20:11008386-11008213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr20:14607700-14607868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr20:15118491-15118319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr20:21428371-21428204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):167, 42

               
               
               Conread position:11-184
               
               
               Cow position:chr20:27315189-27315025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-191
               
               
               Cow position:chr20:7425985-7426161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:11-191
               
               
               Cow position:chr20:11135539-11135725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):110, 57

               
               
               Conread position:11-191
               
               
               Cow position:chr20:34221695-34221515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):49, 87

               
               
               Conread position:12-148
               
               
               Cow position:chr20:35310542-35310404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:12-154
               
               
               Cow position:chr20:13829475-13829335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:12-161
               
               
               Cow position:chr20:6849107-6848961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-167
               
               
               Cow position:chr20:5078489-5078332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):55, 20

               
               
               Conread position:12-170
               
               
               Cow position:chr20:17544839-17544682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):154, 0

               
               
               Conread position:12-176
               
               
               Cow position:chr20:15760356-15760523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):75, 97

               
               
               Conread position:12-179
               
               
               Cow position:chr20:1824419-1824578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-179
               
               
               Cow position:chr20:8021349-8021174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:12-179
               
               
               Cow position:chr20:39016657-39016824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr20:36806733-36806566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr20:10245844-10246009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr20:16818633-16818463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr20:38847015-38847193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr20:2316215-2316382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):20, 44

               
               
               Conread position:12-184
               
               
               Cow position:chr20:3141788-3141617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:140
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr20:3599187-3599352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):96, 43

               
               
               Conread position:12-184
               
               
               Cow position:chr20:5365141-5364973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr20:12995781-12995962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):33, 123

               
               
               Conread position:12-184
               
               
               Cow position:chr20:32847554-32847388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr20:36312301-36312465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr20:40422886-40423061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:13-141
               
               
               Cow position:chr20:21344681-21344553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-148
               
               
               Cow position:chr20:21279591-21279465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:14-155
               
               
               Cow position:chr20:4596837-4596696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-161
               
               
               Cow position:chr20:15515220-15515374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:14-184
               
               
               Cow position:chr20:14490453-14490293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:14-203
               
               
               Cow position:chr20:18763347-18763167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:15-182
               
               
               Cow position:chr20:35444894-35445058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:18-174
               
               
               Cow position:chr20:33359263-33359420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):53, 20

               
               
               Conread position:18-183
               
               
               Cow position:chr20:16405828-16405656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):39, 77

               
               
               Conread position:18-183
               
               
               Cow position:chr20:30744513-30744677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:19-149
               
               
               Cow position:chr20:34467747-34467873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:19-181
               
               
               Cow position:chr20:12205532-12205685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-183
               
               
               Cow position:chr20:8429948-8429791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:19-183
               
               
               Cow position:chr20:11920524-11920686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:19-184
               
               
               Cow position:chr20:6372350-6372516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):36, 97

               
               
               Conread position:19-184
               
               
               Cow position:chr20:13652165-13652324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-184
               
               
               Cow position:chr20:16548067-16548235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:19-184
               
               
               Cow position:chr20:35207990-35208163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):31, 152

               
               
               Conread position:19-185
               
               
               Cow position:chr20:23590541-23590705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:19-187
               
               
               Cow position:chr20:24712049-24711880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:19-191
               
               
               Cow position:chr20:8547269-8547104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):95, 35

               
               
               Conread position:19-197
               
               
               Cow position:chr20:20099390-20099569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):32, 158

               
               
               Conread position:19-201
               
               
               Cow position:chr20:36671217-36671406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):32, 85

               
               
               Conread position:20-161
               
               
               Cow position:chr20:11822682-11822545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:20-184
               
               
               Cow position:chr20:15565609-15565784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):41, 122

               
               
               Conread position:20-184
               
               
               Cow position:chr20:40782171-40782004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:22-148
               
               
               Cow position:chr20:19060638-19060760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:22-164
               
               
               Cow position:chr20:32463323-32463461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:25-173
               
               
               Cow position:chr20:2798790-2798936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:26-176
               
               
               Cow position:chr20:41977850-41977709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):6, 30

               
               
               Conread position:26-191
               
               
               Cow position:chr20:22485060-22484898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):44, 25

               
               
               Conread position:27-184
               
               
               Cow position:chr20:12239489-12239637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:29-179
               
               
               Cow position:chr20:11359439-11359585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):140, 39

               
               
               Conread position:29-182
               
               
               Cow position:chr20:5938234-5938381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:32-179
               
               
               Cow position:chr20:35015737-35015880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):25, 99

               
               
               Conread position:38-183
               
               
               Cow position:chr20:39962764-39962619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:40-184
               
               
               Cow position:chr20:26680389-26680247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:40-191
               
               
               Cow position:chr20:40692249-40692100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:41-177
               
               
               Cow position:chr20:15846940-15846805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:42-184
               
               
               Cow position:chr20:16492258-16492115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):19, 13

               
               
               Conread position:44-191
               
               
               Cow position:chr20:6096312-6096459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:47-183
               
               
               Cow position:chr20:23506294-23506426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:48-161
               
               
               Cow position:chr20:37228906-37229018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:91
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:48-163
               
               
               Cow position:chr20:26059051-26059166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:92
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-182
               
               
               Cow position:chr20:2148014-2148147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:48-183
               
               
               Cow position:chr20:20056309-20056441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr20:17388709-17388574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):45, 23

               
               
               Conread position:48-184
               
               
               Cow position:chr20:23870640-23870775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr20:33438801-33438937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr20:40158079-40157943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-191
               
               
               Cow position:chr20:39728630-39728486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):89, 69

               
               
               Conread position:48-207
               
               
               Cow position:chr20:30027528-30027368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):24, 113

               
               
               Conread position:49-183
               
               
               Cow position:chr20:31799025-31799159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:49-185
               
               
               Cow position:chr20:35727752-35727888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:53-182
               
               
               Cow position:chr20:24002777-24002646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:53-184
               
               
               Cow position:chr20:14100261-14100390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:55-182
               
               
               Cow position:chr20:580746-580875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:56-180
               
               
               Cow position:chr20:33820625-33820502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):114, 37

               
               
               Conread position:56-181
               
               
               Cow position:chr20:39415921-39415796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-183
               
               
               Cow position:chr20:4332306-4332174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:56-183
               
               
               Cow position:chr20:13983526-13983400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr20:17846131-17846004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):26, 102

               
               
               Conread position:56-185
               
               
               Cow position:chr20:21372479-21372350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-198
               
               
               Cow position:chr20:7709609-7709752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:56-201
               
               
               Cow position:chr20:7622812-7622954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:57-167
               
               
               Cow position:chr20:41274726-41274838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:57-184
               
               
               Cow position:chr20:34777350-34777223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:58-182
               
               
               Cow position:chr20:19751476-19751352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:58-184
               
               
               Cow position:chr20:23678546-23678674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:59-168
               
               
               Cow position:chr20:3320976-3321085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:90
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):97, 93

               
               
               Conread position:64-184
               
               
               Cow position:chr20:42469922-42469804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:95
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:64-208
               
               
               Cow position:chr20:16875402-16875546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:65-191
               
               
               Cow position:chr20:15589205-15589077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:67-183
               
               
               Cow position:chr20:9537292-9537183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:68-184
               
               
               Cow position:chr20:16496813-16496929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:94
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):78, 9

               
               
               Conread position:69-183
               
               
               Cow position:chr20:14917443-14917329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:71-187
               
               
               Cow position:chr20:31323943-31323828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:71-191
               
               
               Cow position:chr20:41471256-41471136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:76-184
               
               
               Cow position:chr20:36040626-36040517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:89
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:82-187
               
               
               Cow position:chr20:11866013-11866116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:89
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:83-183
               
               
               Cow position:chr20:15488850-15488750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:84
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-156
               
               
               Cow position:chr21:58690-58542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:1-184
               
               
               Cow position:chr21:976895-977084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):19, 68

               
               
               Conread position:1-184
               
               
               Cow position:chr21:40475744-40475563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:1-185
               
               
               Cow position:chr21:957912-957736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:1-206
               
               
               Cow position:chr21:646072-646275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):161, 7

               
               
               Conread position:2-163
               
               
               Cow position:chr21:27568137-27567979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:2-171
               
               
               Cow position:chr21:37360986-37361165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:3-143
               
               
               Cow position:chr21:5345123-5344983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-155
               
               
               Cow position:chr21:18471816-18471664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-155
               
               
               Cow position:chr21:42355883-42355723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:3-175
               
               
               Cow position:chr21:14247378-14247208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:3-176
               
               
               Cow position:chr21:874566-874393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-176
               
               
               Cow position:chr21:34737403-34737238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:3-177
               
               
               Cow position:chr21:17519270-17519092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:3-179
               
               
               Cow position:chr21:18720863-18721038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:3-182
               
               
               Cow position:chr21:2536894-2537073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-182
               
               
               Cow position:chr21:8242157-8241978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-182
               
               
               Cow position:chr21:40059268-40059094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):17, 51

               
               
               Conread position:3-183
               
               
               Cow position:chr21:7066143-7066316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):79, 52

               
               
               Conread position:3-183
               
               
               Cow position:chr21:9278770-9278587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr21:16604072-16604252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr21:18155322-18155501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr21:25345106-25344926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr21:27711992-27712178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:3-184
               
               
               Cow position:chr21:6051746-6051567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:3-184
               
               
               Cow position:chr21:14746014-14745834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):177, 0

               
               
               Conread position:3-185
               
               
               Cow position:chr21:17193506-17193688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:151
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):128, 73

               
               
               Conread position:3-186
               
               
               Cow position:chr21:27810634-27810452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):60, 149

               
               
               Conread position:3-188
               
               
               Cow position:chr21:21940169-21940347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:3-191
               
               
               Cow position:chr21:10859052-10858865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):145, 0

               
               
               Conread position:3-198
               
               
               Cow position:chr21:22211498-22211299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):182, 0

               
               
               Conread position:4-176
               
               
               Cow position:chr21:30243442-30243609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):5, 49

               
               
               Conread position:5-182
               
               
               Cow position:chr21:34833838-34834014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):38, 112

               
               
               Conread position:5-191
               
               
               Cow position:chr21:30835606-30835423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):155, 0

               
               
               Conread position:7-154
               
               
               Cow position:chr21:42905157-42905304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:7-179
               
               
               Cow position:chr21:42017363-42017534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):46, 22

               
               
               Conread position:7-182
               
               
               Cow position:chr21:15012672-15012505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:7-182
               
               
               Cow position:chr21:41287558-41287727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:7-184
               
               
               Cow position:chr21:40589242-40589420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):166, 57

               
               
               Conread position:7-191
               
               
               Cow position:chr21:868681-868867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:148
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:8-117
               
               
               Cow position:chr21:37014188-37014297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:90
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-125
               
               
               Cow position:chr21:48242813-48242933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:101
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-131
               
               
               Cow position:chr21:41692290-41692167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-138
               
               
               Cow position:chr21:15444845-15444975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-140
               
               
               Cow position:chr21:31258706-31258574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-146
               
               
               Cow position:chr21:7424776-7424912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr21:45537425-45537284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:8-149
               
               
               Cow position:chr21:8351057-8351194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-149
               
               
               Cow position:chr21:16498752-16498615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-150
               
               
               Cow position:chr21:3379516-3379654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):10, 48

               
               
               Conread position:8-154
               
               
               Cow position:chr21:23672982-23672839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:8-155
               
               
               Cow position:chr21:8509198-8509341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-155
               
               
               Cow position:chr21:47464882-47465025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:8-159
               
               
               Cow position:chr21:6391581-6391430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-159
               
               
               Cow position:chr21:29011739-29011881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-165
               
               
               Cow position:chr21:32272167-32272003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:8-168
               
               
               Cow position:chr21:30970172-30970017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:8-168
               
               
               Cow position:chr21:40457845-40457681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):44, 31

               
               
               Conread position:8-170
               
               
               Cow position:chr21:7539288-7539450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-170
               
               
               Cow position:chr21:14760794-14760643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:8-171
               
               
               Cow position:chr21:8494880-8494717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):73, 87

               
               
               Conread position:8-171
               
               
               Cow position:chr21:11353300-11353137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-172
               
               
               Cow position:chr21:15305058-15305223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):60, 43

               
               
               Conread position:8-172
               
               
               Cow position:chr21:18449992-18449829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:8-172
               
               
               Cow position:chr21:41974130-41974303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-175
               
               
               Cow position:chr21:19161952-19161785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-177
               
               
               Cow position:chr21:5214589-5214419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:8-177
               
               
               Cow position:chr21:6317448-6317616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):164, 0

               
               
               Conread position:8-177
               
               
               Cow position:chr21:8986263-8986093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):52, 149

               
               
               Conread position:8-177
               
               
               Cow position:chr21:41918002-41918170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):48, 20

               
               
               Conread position:8-179
               
               
               Cow position:chr21:938258-938088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr21:8713720-8713891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr21:11743256-11743435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr21:13584815-13584992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr21:42189523-42189688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):142, 47

               
               
               Conread position:8-180
               
               
               Cow position:chr21:5898171-5898337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):150, 43

               
               
               Conread position:8-180
               
               
               Cow position:chr21:10264272-10264101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:8-180
               
               
               Cow position:chr21:13842730-13842557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:8-180
               
               
               Cow position:chr21:36695850-36696022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr21:6998178-6998009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):154, 37

               
               
               Conread position:8-181
               
               
               Cow position:chr21:9301462-9301290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):62, 45

               
               
               Conread position:8-181
               
               
               Cow position:chr21:13588999-13588831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr21:17890540-17890369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr21:71823-71653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr21:12739325-12739146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):51, 106

               
               
               Conread position:8-182
               
               
               Cow position:chr21:24875589-24875418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):146, 47

               
               
               Conread position:8-182
               
               
               Cow position:chr21:27863282-27863447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr21:30222579-30222411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr21:38449215-38449379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr21:40820614-40820787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr21:42135382-42135550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr21:43316655-43316829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr21:6624396-6624222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr21:12154362-12154196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):154, 47

               
               
               Conread position:8-183
               
               
               Cow position:chr21:13090614-13090439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr21:13656397-13656571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr21:14360605-14360430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr21:17184155-17183982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:142
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr21:19195924-19196099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr21:21686654-21686483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr21:22718546-22718718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr21:23535950-23535774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr21:24266324-24266501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr21:26018618-26018444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr21:27521104-27521272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):167, 47

               
               
               Conread position:8-183
               
               
               Cow position:chr21:27677720-27677547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):165, 141

               
               
               Conread position:8-183
               
               
               Cow position:chr21:30938429-30938607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):150, 40

               
               
               Conread position:8-183
               
               
               Cow position:chr21:31658917-31659082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr21:41140478-41140652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):149, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr21:41621365-41621190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr21:42501289-42501109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):147, 63

               
               
               Conread position:8-183
               
               
               Cow position:chr21:44724139-44724303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr21:44829519-44829694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr21:47761008-47760833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr21:643560-643388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr21:1511523-1511357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr21:3585127-3585304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr21:6713287-6713461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):158, 47

               
               
               Conread position:8-184
               
               
               Cow position:chr21:10004646-10004821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:143
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr21:10114096-10114266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr21:12461732-12461903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):10, 48

               
               
               Conread position:8-184
               
               
               Cow position:chr21:24797892-24797721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr21:26735634-26735473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr21:28237462-28237642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):62, 134

               
               
               Conread position:8-184
               
               
               Cow position:chr21:28244704-28244535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr21:30231459-30231630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr21:32339508-32339676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:151
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr21:36508470-36508302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr21:36763299-36763125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr21:38901000-38900838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr21:40266361-40266189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):149, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr21:40291512-40291682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr21:41610416-41610231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr21:48482293-48482464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr21:49699800-49699976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-185
               
               
               Cow position:chr21:22014429-22014253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):11, 38

               
               
               Conread position:8-186
               
               
               Cow position:chr21:3360779-3360954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):129, 47

               
               
               Conread position:8-191
               
               
               Cow position:chr21:47284-47097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr21:4281646-4281818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr21:6834287-6834106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr21:9477401-9477221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr21:18568400-18568582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr21:28919294-28919466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr21:41590329-41590508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr21:45970942-45971115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-196
               
               
               Cow position:chr21:43655939-43655754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):139, 60

               
               
               Conread position:8-197
               
               
               Cow position:chr21:31279490-31279307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-200
               
               
               Cow position:chr21:30145396-30145580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:8-201
               
               
               Cow position:chr21:5218945-5218749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):128, 56

               
               
               Conread position:8-202
               
               
               Cow position:chr21:6291986-6291794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):178, 0

               
               
               Conread position:8-206
               
               
               Cow position:chr21:30977031-30977216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):170, 48

               
               
               Conread position:8-210
               
               
               Cow position:chr21:19148353-19148148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):53, 96

               
               
               Conread position:8-213
               
               
               Cow position:chr21:12349005-12348799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):197, 0

               
               
               Conread position:8-213
               
               
               Cow position:chr21:22720804-22720610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):41, 80

               
               
               Conread position:9-140
               
               
               Cow position:chr21:40916717-40916591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:109
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:9-179
               
               
               Cow position:chr21:42146381-42146215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:9-184
               
               
               Cow position:chr21:22210007-22210182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):61, 51

               
               
               Conread position:9-184
               
               
               Cow position:chr21:46848897-46849063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:9-207
               
               
               Cow position:chr21:30848712-30848903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):185, 46

               
               
               Conread position:10-146
               
               
               Cow position:chr21:36398333-36398461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:10-148
               
               
               Cow position:chr21:8358993-8359125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:10-182
               
               
               Cow position:chr21:11644731-11644900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):70, 45

               
               
               Conread position:10-183
               
               
               Cow position:chr21:7221113-7221275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):16, 55

               
               
               Conread position:10-183
               
               
               Cow position:chr21:18341457-18341283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):151, 0

               
               
               Conread position:10-184
               
               
               Cow position:chr21:37928886-37928713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:10-194
               
               
               Cow position:chr21:24351086-24350906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):71, 114

               
               
               Conread position:11-128
               
               
               Cow position:chr21:46609769-46609884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-135
               
               
               Cow position:chr21:19339996-19340119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:11-147
               
               
               Cow position:chr21:742508-742378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:11-148
               
               
               Cow position:chr21:6042023-6041884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:11-148
               
               
               Cow position:chr21:40089530-40089668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:11-148
               
               
               Cow position:chr21:47713773-47713908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):54, 38

               
               
               Conread position:11-149
               
               
               Cow position:chr21:32536625-32536495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-154
               
               
               Cow position:chr21:37495710-37495852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):120, 34

               
               
               Conread position:11-155
               
               
               Cow position:chr21:8506313-8506453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:11-155
               
               
               Cow position:chr21:15271203-15271344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:11-155
               
               
               Cow position:chr21:25012312-25012175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-156
               
               
               Cow position:chr21:9873556-9873409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):118, 26

               
               
               Conread position:11-158
               
               
               Cow position:chr21:40930242-40930385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:11-161
               
               
               Cow position:chr21:28882417-28882268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:11-171
               
               
               Cow position:chr21:11779304-11779464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):55, 113

               
               
               Conread position:11-175
               
               
               Cow position:chr21:5464981-5464821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:11-175
               
               
               Cow position:chr21:32647952-32648116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-177
               
               
               Cow position:chr21:745404-745246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-178
               
               
               Cow position:chr21:12322732-12322567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr21:29069089-29069261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):159, 141

               
               
               Conread position:11-182
               
               
               Cow position:chr21:34654304-34654140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr21:42841351-42841531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr21:47363490-47363670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):49, 26

               
               
               Conread position:11-182
               
               
               Cow position:chr21:47719070-47719233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr21:12310707-12310542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr21:12749002-12749174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr21:13047956-13048128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr21:13580649-13580478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr21:14464820-14464645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:11-183
               
               
               Cow position:chr21:17874956-17875128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr21:20165874-20165707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr21:20213537-20213712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr21:24296531-24296703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):104, 85

               
               
               Conread position:11-183
               
               
               Cow position:chr21:29658508-29658341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):83, 49

               
               
               Conread position:11-183
               
               
               Cow position:chr21:31652621-31652453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr21:38482616-38482448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):48, 61

               
               
               Conread position:11-184
               
               
               Cow position:chr21:7377689-7377862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr21:8545786-8545954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):152, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr21:37706178-37706351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr21:38720483-38720314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):59, 24

               
               
               Conread position:11-185
               
               
               Cow position:chr21:28191583-28191419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:11-187
               
               
               Cow position:chr21:23587106-23586943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:11-191
               
               
               Cow position:chr21:13716865-13717044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:11-191
               
               
               Cow position:chr21:20318754-20318570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):9, 146

               
               
               Conread position:11-191
               
               
               Cow position:chr21:42328427-42328608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):63, 84

               
               
               Conread position:12-145
               
               
               Cow position:chr21:21772325-21772192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-148
               
               
               Cow position:chr21:39810293-39810158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:12-149
               
               
               Cow position:chr21:24757170-24757039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-157
               
               
               Cow position:chr21:45446771-45446626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):64, 136

               
               
               Conread position:12-164
               
               
               Cow position:chr21:1464579-1464427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):56, 42

               
               
               Conread position:12-167
               
               
               Cow position:chr21:16797088-16796932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:12-168
               
               
               Cow position:chr21:11006535-11006691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):98, 76

               
               
               Conread position:12-176
               
               
               Cow position:chr21:18783233-18783397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):80, 51

               
               
               Conread position:12-179
               
               
               Cow position:chr21:17302739-17302572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):66, 42

               
               
               Conread position:12-179
               
               
               Cow position:chr21:48637522-48637689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-181
               
               
               Cow position:chr21:7201384-7201216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:12-181
               
               
               Cow position:chr21:26828738-26828904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:12-181
               
               
               Cow position:chr21:38918435-38918269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):66, 145

               
               
               Conread position:12-182
               
               
               Cow position:chr21:17252744-17252912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr21:6154036-6153866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):148, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr21:8430864-8431035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:139
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr21:13225950-13225780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr21:18059726-18059896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr21:27409502-27409667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr21:29014684-29014845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr21:44251607-44251778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr21:46809531-46809700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr21:33966-33783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr21:20153190-20153020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):67, 84

               
               
               Conread position:12-186
               
               
               Cow position:chr21:39319174-39319347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):171, 0

               
               
               Conread position:12-191
               
               
               Cow position:chr21:3178081-3177904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:12-196
               
               
               Cow position:chr21:3763515-3763690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:13-174
               
               
               Cow position:chr21:12640705-12640544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:13-183
               
               
               Cow position:chr21:16152672-16152509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:13-184
               
               
               Cow position:chr21:46132824-46132638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:14-130
               
               
               Cow position:chr21:5538147-5538261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:14-148
               
               
               Cow position:chr21:16119929-16120061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:14-161
               
               
               Cow position:chr21:438787-438649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:14-161
               
               
               Cow position:chr21:3135635-3135782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-168
               
               
               Cow position:chr21:27744260-27744105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):50, 67

               
               
               Conread position:14-170
               
               
               Cow position:chr21:45651228-45651382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:14-177
               
               
               Cow position:chr21:15544006-15544155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:14-179
               
               
               Cow position:chr21:42145050-42144893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:14-181
               
               
               Cow position:chr21:35252674-35252514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):147, 41

               
               
               Conread position:14-183
               
               
               Cow position:chr21:10410454-10410289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:14-184
               
               
               Cow position:chr21:15584190-15584355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:14-191
               
               
               Cow position:chr21:13817624-13817449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:15-181
               
               
               Cow position:chr21:20160909-20160743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:136
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:15-185
               
               
               Cow position:chr21:34738805-34738640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):142, 40

               
               
               Conread position:16-184
               
               
               Cow position:chr21:29978535-29978696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:17-184
               
               
               Cow position:chr21:36795831-36795667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:18-126
               
               
               Cow position:chr21:42920773-42920883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:89
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:18-177
               
               
               Cow position:chr21:4109004-4108846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:18-178
               
               
               Cow position:chr21:15869914-15869760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:18-183
               
               
               Cow position:chr21:23979952-23980117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:18-184
               
               
               Cow position:chr21:6735966-6736125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:18-185
               
               
               Cow position:chr21:17433040-17433206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:19-145
               
               
               Cow position:chr21:9590766-9590642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-184
               
               
               Cow position:chr21:7768661-7768502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-184
               
               
               Cow position:chr21:9416476-9416314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):124, 36

               
               
               Conread position:19-184
               
               
               Cow position:chr21:17642763-17642920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:19-184
               
               
               Cow position:chr21:19259042-19258886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:19-201
               
               
               Cow position:chr21:42007233-42007413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):156, 0

               
               
               Conread position:19-201
               
               
               Cow position:chr21:47763891-47764069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:20-130
               
               
               Cow position:chr21:2787570-2787678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:91
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:20-155
               
               
               Cow position:chr21:7460830-7460700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:20-168
               
               
               Cow position:chr21:41738133-41737988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:20-178
               
               
               Cow position:chr21:11099743-11099901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:20-183
               
               
               Cow position:chr21:9346651-9346487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:20-183
               
               
               Cow position:chr21:14452462-14452299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:20-184
               
               
               Cow position:chr21:23568450-23568288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):138, 36

               
               
               Conread position:20-185
               
               
               Cow position:chr21:641809-641650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:20-189
               
               
               Cow position:chr21:29418796-29418631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:20-205
               
               
               Cow position:chr21:13043800-13043974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:21-154
               
               
               Cow position:chr21:30031162-30031292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:21-183
               
               
               Cow position:chr21:34151804-34151651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:21-184
               
               
               Cow position:chr21:41041172-41041008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):40, 61

               
               
               Conread position:25-183
               
               
               Cow position:chr21:27145768-27145927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):56, 93

               
               
               Conread position:27-183
               
               
               Cow position:chr21:8549901-8549747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:27-191
               
               
               Cow position:chr21:21169275-21169435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:27-204
               
               
               Cow position:chr21:13134821-13134647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:29-173
               
               
               Cow position:chr21:45329738-45329875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:29-182
               
               
               Cow position:chr21:9990727-9990576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:30-184
               
               
               Cow position:chr21:713161-713006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:33-182
               
               
               Cow position:chr21:37299677-37299528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:38-183
               
               
               Cow position:chr21:41139308-41139454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):78, 41

               
               
               Conread position:38-184
               
               
               Cow position:chr21:31159605-31159466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:39-203
               
               
               Cow position:chr21:13753083-13752920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:47-173
               
               
               Cow position:chr21:21479101-21479226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):26, 48

               
               
               Conread position:47-183
               
               
               Cow position:chr21:40168425-40168560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:47-191
               
               
               Cow position:chr21:396069-395925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):6, 114

               
               
               Conread position:48-182
               
               
               Cow position:chr21:19359976-19360110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-182
               
               
               Cow position:chr21:36682525-36682391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-183
               
               
               Cow position:chr21:9334688-9334553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):34, 96

               
               
               Conread position:48-183
               
               
               Cow position:chr21:27624901-27624763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:48-183
               
               
               Cow position:chr21:46470385-46470251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):27, 107

               
               
               Conread position:48-184
               
               
               Cow position:chr21:471874-471740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr21:13164059-13163923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr21:26245114-26244978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr21:30157606-30157741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr21:30256074-30256205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr21:36910135-36909995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr21:42384709-42384572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:48-185
               
               
               Cow position:chr21:12200300-12200165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:48-185
               
               
               Cow position:chr21:43265193-43265332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:49-184
               
               
               Cow position:chr21:25383224-25383088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):108, 9

               
               
               Conread position:50-177
               
               
               Cow position:chr21:42131157-42131284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:51-183
               
               
               Cow position:chr21:23321881-23322013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:51-184
               
               
               Cow position:chr21:10118763-10118623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):17, 26

               
               
               Conread position:53-182
               
               
               Cow position:chr21:13365537-13365409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:55-175
               
               
               Cow position:chr21:7686619-7686735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:55-175
               
               
               Cow position:chr21:26658789-26658909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:55-182
               
               
               Cow position:chr21:30980385-30980511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:97
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:56-167
               
               
               Cow position:chr21:40305136-40305024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:56-173
               
               
               Cow position:chr21:25159363-25159247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:96
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr21:10538063-10538191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr21:41598003-41597875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-191
               
               
               Cow position:chr21:8978639-8978506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:56-191
               
               
               Cow position:chr21:45473567-45473701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:57-184
               
               
               Cow position:chr21:44592019-44592145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:103
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:57-191
               
               
               Cow position:chr21:43259410-43259276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):36, 48

               
               
               Conread position:57-201
               
               
               Cow position:chr21:3818399-3818257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:58-183
               
               
               Cow position:chr21:42562816-42562696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:58-184
               
               
               Cow position:chr21:15976822-15976697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:61-184
               
               
               Cow position:chr21:5406003-5405880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:101
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-185
               
               
               Cow position:chr21:7584036-7583913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:100
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-182
               
               
               Cow position:chr21:802133-802251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-183
               
               
               Cow position:chr21:10001259-10001140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):77, 84

               
               
               Conread position:64-184
               
               
               Cow position:chr21:28924294-28924173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:65-181
               
               
               Cow position:chr21:37344918-37345034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:65-184
               
               
               Cow position:chr21:5427121-5427004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):12, 38

               
               
               Conread position:66-183
               
               
               Cow position:chr21:37837884-37838001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:95
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:66-199
               
               
               Cow position:chr21:41051070-41050936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):123, 55

               
               
               Conread position:67-181
               
               
               Cow position:chr21:43362211-43362097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:67-183
               
               
               Cow position:chr21:8686962-8687078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:67-184
               
               
               Cow position:chr21:3400651-3400767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:96
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:67-184
               
               
               Cow position:chr21:27081225-27081110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):21, 79

               
               
               Conread position:67-187
               
               
               Cow position:chr21:43336787-43336668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:69-183
               
               
               Cow position:chr21:40134336-40134222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:90
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:69-191
               
               
               Cow position:chr21:17063101-17062981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):7, 82

               
               
               Conread position:70-184
               
               
               Cow position:chr21:27341417-27341527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:71-170
               
               
               Cow position:chr21:43642715-43642617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:83
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:74-183
               
               
               Cow position:chr21:27406070-27406179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:93
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:74-184
               
               
               Cow position:chr21:7823538-7823426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:94
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):30, 54

               
               
               Conread position:74-184
               
               
               Cow position:chr21:38267888-38267998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:79-191
               
               
               Cow position:chr21:35647659-35647771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-167
               
               
               Cow position:chr22:27591377-27591208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):63, 7

               
               
               Conread position:1-173
               
               
               Cow position:chr22:23287880-23288049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:1-181
               
               
               Cow position:chr22:14488114-14487935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:1-184
               
               
               Cow position:chr22:16346569-16346393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:1-184
               
               
               Cow position:chr22:28665479-28665280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:1-184
               
               
               Cow position:chr22:38978018-38977838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):67, 7

               
               
               Conread position:2-154
               
               
               Cow position:chr22:5673989-5673838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):9, 54

               
               
               Conread position:2-181
               
               
               Cow position:chr22:1728407-1728234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):54, 7

               
               
               Conread position:2-182
               
               
               Cow position:chr22:31599608-31599438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:2-183
               
               
               Cow position:chr22:13735095-13735276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):18, 61

               
               
               Conread position:2-183
               
               
               Cow position:chr22:21415792-21415619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:2-191
               
               
               Cow position:chr22:3842803-3842610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):18, 155

               
               
               Conread position:3-130
               
               
               Cow position:chr22:16274977-16275101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:3-131
               
               
               Cow position:chr22:18441259-18441131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-150
               
               
               Cow position:chr22:43130966-43131113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-170
               
               
               Cow position:chr22:47556028-47555859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:3-175
               
               
               Cow position:chr22:39472186-39472358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-178
               
               
               Cow position:chr22:12313594-12313428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:3-179
               
               
               Cow position:chr22:2633023-2632848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:3-180
               
               
               Cow position:chr22:32514471-32514294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-181
               
               
               Cow position:chr22:3301161-3301339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-182
               
               
               Cow position:chr22:17244756-17244935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-182
               
               
               Cow position:chr22:17258987-17259168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr22:11813549-11813725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr22:16340029-16339853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr22:16872690-16872869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr22:26112542-26112364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):61, 81

               
               
               Conread position:3-183
               
               
               Cow position:chr22:43526135-43525957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:3-184
               
               
               Cow position:chr22:26268023-26267847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:3-184
               
               
               Cow position:chr22:28568976-28568795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-185
               
               
               Cow position:chr22:31209765-31209583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-186
               
               
               Cow position:chr22:17132232-17132414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):180, 0

               
               
               Conread position:3-191
               
               
               Cow position:chr22:1485041-1484853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-194
               
               
               Cow position:chr22:27275640-27275449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:4-129
               
               
               Cow position:chr22:31790805-31790930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:101
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:4-183
               
               
               Cow position:chr22:1326595-1326419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:4-184
               
               
               Cow position:chr22:23758838-23759015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:5-180
               
               
               Cow position:chr22:22860738-22860910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):168, 63

               
               
               Conread position:5-183
               
               
               Cow position:chr22:35215724-35215546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:5-184
               
               
               Cow position:chr22:6852408-6852586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):35, 72

               
               
               Conread position:5-184
               
               
               Cow position:chr22:15024936-15025113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:145
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:5-184
               
               
               Cow position:chr22:26339937-26339751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:5-193
               
               
               Cow position:chr22:20627006-20626825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):108, 48

               
               
               Conread position:6-146
               
               
               Cow position:chr22:6686547-6686687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:6-183
               
               
               Cow position:chr22:27907704-27907881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:7-141
               
               
               Cow position:chr22:42685053-42684932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:7-168
               
               
               Cow position:chr22:6494346-6494174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:7-183
               
               
               Cow position:chr22:20847047-20846852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:7-183
               
               
               Cow position:chr22:32480296-32480482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:8-121
               
               
               Cow position:chr22:31409410-31409297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:92
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-127
               
               
               Cow position:chr22:9983655-9983774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-139
               
               
               Cow position:chr22:6128008-6128135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-143
               
               
               Cow position:chr22:24557354-24557488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:8-145
               
               
               Cow position:chr22:11790156-11790019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-145
               
               
               Cow position:chr22:16639478-16639340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:8-147
               
               
               Cow position:chr22:9075581-9075441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:8-147
               
               
               Cow position:chr22:30684897-30684762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr22:530408-530545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr22:47820609-47820471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:8-149
               
               
               Cow position:chr22:15950217-15950354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-149
               
               
               Cow position:chr22:16564315-16564180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):76, 46

               
               
               Conread position:8-149
               
               
               Cow position:chr22:27066553-27066410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:8-153
               
               
               Cow position:chr22:12637771-12637628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:8-154
               
               
               Cow position:chr22:1552065-1551928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:8-155
               
               
               Cow position:chr22:16655569-16655712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-155
               
               
               Cow position:chr22:39471985-39472132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):137, 107

               
               
               Conread position:8-156
               
               
               Cow position:chr22:17119984-17119837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:8-161
               
               
               Cow position:chr22:45513354-45513505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):46, 136

               
               
               Conread position:8-164
               
               
               Cow position:chr22:25312685-25312526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:8-165
               
               
               Cow position:chr22:43730452-43730302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-168
               
               
               Cow position:chr22:11613595-11613437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-170
               
               
               Cow position:chr22:22023074-22022912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-171
               
               
               Cow position:chr22:1959408-1959246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:8-171
               
               
               Cow position:chr22:3937232-3937070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):72, 46

               
               
               Conread position:8-171
               
               
               Cow position:chr22:18193637-18193473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):70, 87

               
               
               Conread position:8-171
               
               
               Cow position:chr22:45683864-45684029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):51, 29

               
               
               Conread position:8-173
               
               
               Cow position:chr22:7512789-7512623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):60, 87

               
               
               Conread position:8-173
               
               
               Cow position:chr22:23980037-23980200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-173
               
               
               Cow position:chr22:34618979-34618806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:8-174
               
               
               Cow position:chr22:36209426-36209260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-175
               
               
               Cow position:chr22:24282792-24282959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-176
               
               
               Cow position:chr22:6176112-6176280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):42, 164

               
               
               Conread position:8-176
               
               
               Cow position:chr22:13957475-13957639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-176
               
               
               Cow position:chr22:34895129-34894972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-176
               
               
               Cow position:chr22:35533059-35533227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):62, 143

               
               
               Conread position:8-177
               
               
               Cow position:chr22:1991767-1991603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:8-177
               
               
               Cow position:chr22:11497665-11497494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):154, 19

               
               
               Conread position:8-178
               
               
               Cow position:chr22:12673162-12673332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-178
               
               
               Cow position:chr22:14600163-14600330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr22:1984027-1983850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr22:2109460-2109625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr22:14178662-14178825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr22:16813965-16813800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr22:26189042-26188872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):72, 47

               
               
               Conread position:8-179
               
               
               Cow position:chr22:35578606-35578775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr22:43398169-43398004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:8-180
               
               
               Cow position:chr22:5375565-5375395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:8-180
               
               
               Cow position:chr22:7067625-7067446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:8-180
               
               
               Cow position:chr22:16541479-16541651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr22:2644103-2643928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr22:15490825-15490653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:143
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):163, 46

               
               
               Conread position:8-181
               
               
               Cow position:chr22:25809111-25809276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr22:30515439-30515257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr22:33447908-33448081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr22:39215442-39215615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr22:23630186-23630352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr22:25221733-25221896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr22:27681894-27681716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr22:27826013-27825839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr22:28357200-28357028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):62, 47

               
               
               Conread position:8-182
               
               
               Cow position:chr22:38438985-38439158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):68, 47

               
               
               Conread position:8-182
               
               
               Cow position:chr22:40349511-40349343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):157, 53

               
               
               Conread position:8-182
               
               
               Cow position:chr22:41025928-41025754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):167, 117

               
               
               Conread position:8-182
               
               
               Cow position:chr22:43573119-43572942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr22:1776233-1776057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr22:1849245-1849072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr22:3470459-3470286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):130, 41

               
               
               Conread position:8-183
               
               
               Cow position:chr22:4736196-4736021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr22:5016660-5016495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr22:5291025-5290848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr22:6149218-6149394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):148, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr22:7496937-7497112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr22:11601205-11601033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr22:12681628-12681802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr22:12929108-12929282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr22:14641686-14641859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr22:23372689-23372866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):62, 78

               
               
               Conread position:8-183
               
               
               Cow position:chr22:28146852-28146674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr22:29642282-29642112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr22:32326969-32326797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr22:35627520-35627339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):139, 86

               
               
               Conread position:8-183
               
               
               Cow position:chr22:40374776-40374607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr22:42230351-42230523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr22:46610607-46610782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):70, 101

               
               
               Conread position:8-183
               
               
               Cow position:chr22:47562881-47562701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr22:976927-977110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):55, 29

               
               
               Conread position:8-184
               
               
               Cow position:chr22:2876628-2876801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr22:4075715-4075890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):131, 63

               
               
               Conread position:8-184
               
               
               Cow position:chr22:4156646-4156820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr22:4164149-4163976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr22:5595638-5595812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr22:6289329-6289506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr22:8287350-8287184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr22:8733176-8733341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):143, 47

               
               
               Conread position:8-184
               
               
               Cow position:chr22:8883180-8883012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr22:9372696-9372518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:146
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr22:9597415-9597581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):165, 45

               
               
               Conread position:8-184
               
               
               Cow position:chr22:11131039-11130867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr22:12188304-12188484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:147
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr22:12195390-12195571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr22:12678251-12678425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:143
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr22:13866838-13866661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):149, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr22:14006340-14006174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr22:16621362-16621173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr22:24542534-24542359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):68, 86

               
               
               Conread position:8-184
               
               
               Cow position:chr22:24802520-24802703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr22:27274519-27274703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr22:28057872-28058053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):64, 21

               
               
               Conread position:8-184
               
               
               Cow position:chr22:28672305-28672142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr22:34726848-34726665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):56, 116

               
               
               Conread position:8-184
               
               
               Cow position:chr22:40120703-40120879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):48, 114

               
               
               Conread position:8-184
               
               
               Cow position:chr22:41854072-41853902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):123, 38

               
               
               Conread position:8-184
               
               
               Cow position:chr22:44410886-44410718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-185
               
               
               Cow position:chr22:45771856-45772028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:8-186
               
               
               Cow position:chr22:14142954-14143119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr22:3987692-3987506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr22:6754093-6754277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:146
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr22:7832176-7832364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr22:12389272-12389089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr22:21746808-21746635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):135, 37

               
               
               Conread position:8-191
               
               
               Cow position:chr22:24134153-24134333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr22:28937772-28937942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr22:37202018-37201839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr22:39602455-39602272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:145
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr22:40789730-40789556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-192
               
               
               Cow position:chr22:35029429-35029258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-193
               
               
               Cow position:chr22:25247079-25246900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):162, 47

               
               
               Conread position:8-199
               
               
               Cow position:chr22:8331171-8330980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:150
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-203
               
               
               Cow position:chr22:19413864-19414057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):177, 0

               
               
               Conread position:8-205
               
               
               Cow position:chr22:1046018-1046219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:8-207
               
               
               Cow position:chr22:6486134-6485938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):160, 54

               
               
               Conread position:8-208
               
               
               Cow position:chr22:18847801-18847989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):181, 47

               
               
               Conread position:8-208
               
               
               Cow position:chr22:23806368-23806568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-215
               
               
               Cow position:chr22:24890390-24890180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):147, 47

               
               
               Conread position:8-233
               
               
               Cow position:chr22:10468680-10468465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:9-156
               
               
               Cow position:chr22:44717889-44717746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:9-162
               
               
               Cow position:chr22:10763947-10763802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:9-179
               
               
               Cow position:chr22:19341363-19341203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:9-182
               
               
               Cow position:chr22:1821415-1821586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:9-182
               
               
               Cow position:chr22:3534100-3533935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):34, 45

               
               
               Conread position:9-182
               
               
               Cow position:chr22:12315976-12315810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:9-182
               
               
               Cow position:chr22:14690790-14690972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:9-183
               
               
               Cow position:chr22:29881100-29881274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:9-184
               
               
               Cow position:chr22:7361806-7361980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):40, 111

               
               
               Conread position:9-184
               
               
               Cow position:chr22:8090366-8090531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:9-184
               
               
               Cow position:chr22:10402779-10402949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:9-184
               
               
               Cow position:chr22:16724519-16724690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:10-130
               
               
               Cow position:chr22:4083889-4084009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:10-149
               
               
               Cow position:chr22:12573373-12573236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:10-156
               
               
               Cow position:chr22:14644001-14643861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:10-156
               
               
               Cow position:chr22:36539491-36539627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:10-165
               
               
               Cow position:chr22:13286616-13286464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:10-171
               
               
               Cow position:chr22:2438807-2438963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):27, 45

               
               
               Conread position:10-179
               
               
               Cow position:chr22:45012594-45012751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:10-181
               
               
               Cow position:chr22:6655594-6655762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):14, 25

               
               
               Conread position:10-183
               
               
               Cow position:chr22:32661682-32661508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):51, 115

               
               
               Conread position:10-185
               
               
               Cow position:chr22:25690110-25690282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):140, 44

               
               
               Conread position:10-191
               
               
               Cow position:chr22:27401904-27401727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):82, 46

               
               
               Conread position:11-131
               
               
               Cow position:chr22:800148-800021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:11-145
               
               
               Cow position:chr22:30583824-30583690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-148
               
               
               Cow position:chr22:12902689-12902822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:11-149
               
               
               Cow position:chr22:18145702-18145568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:11-154
               
               
               Cow position:chr22:13930447-13930307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:11-154
               
               
               Cow position:chr22:31870088-31870230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:11-155
               
               
               Cow position:chr22:9735435-9735295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:11-161
               
               
               Cow position:chr22:6800242-6800390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):122, 44

               
               
               Conread position:11-161
               
               
               Cow position:chr22:14372334-14372190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-164
               
               
               Cow position:chr22:24583905-24584053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):80, 44

               
               
               Conread position:11-164
               
               
               Cow position:chr22:48155588-48155443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:11-171
               
               
               Cow position:chr22:3730506-3730666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-172
               
               
               Cow position:chr22:21601357-21601517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:11-175
               
               
               Cow position:chr22:45104098-45104265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:11-178
               
               
               Cow position:chr22:30687186-30687029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:11-179
               
               
               Cow position:chr22:20166694-20166859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):7, 19

               
               
               Conread position:11-179
               
               
               Cow position:chr22:23675806-23675963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:11-181
               
               
               Cow position:chr22:1830210-1830049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-181
               
               
               Cow position:chr22:2408962-2409132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-181
               
               
               Cow position:chr22:22433213-22433042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:11-181
               
               
               Cow position:chr22:23265482-23265652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:141
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-181
               
               
               Cow position:chr22:46665329-46665496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr22:5616463-5616301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr22:16235334-16235506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr22:23209734-23209563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr22:30818376-30818212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr22:43237240-43237409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr22:1065274-1065103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr22:1714695-1714867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr22:3430362-3430191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):56, 91

               
               
               Conread position:11-183
               
               
               Cow position:chr22:7140815-7140642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr22:11766881-11767052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):47, 55

               
               
               Conread position:11-183
               
               
               Cow position:chr22:22013916-22013748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr22:25205799-25205973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):48, 121

               
               
               Conread position:11-183
               
               
               Cow position:chr22:26417447-26417281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr22:26803989-26803816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr22:27828544-27828376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr22:30607026-30606854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr22:40387318-40387150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):84, 44

               
               
               Conread position:11-184
               
               
               Cow position:chr22:1588462-1588291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr22:2704466-2704295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr22:3282662-3282825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr22:6096849-6097020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr22:8412697-8412525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):62, 45

               
               
               Conread position:11-184
               
               
               Cow position:chr22:16845226-16845407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr22:18933544-18933719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr22:33399322-33399493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):67, 42

               
               
               Conread position:11-184
               
               
               Cow position:chr22:35902254-35902424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):92, 16

               
               
               Conread position:11-191
               
               
               Cow position:chr22:6106204-6106388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:11-191
               
               
               Cow position:chr22:10338939-10339125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):53, 155

               
               
               Conread position:11-191
               
               
               Cow position:chr22:19459877-19460056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:11-214
               
               
               Cow position:chr22:11039625-11039421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):151, 0

               
               
               Conread position:11-216
               
               
               Cow position:chr22:30176887-30176686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):186, 141

               
               
               Conread position:12-136
               
               
               Cow position:chr22:21499678-21499801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:12-140
               
               
               Cow position:chr22:1529019-1529145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:12-149
               
               
               Cow position:chr22:4632436-4632299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):123, 76

               
               
               Conread position:12-154
               
               
               Cow position:chr22:1074433-1074291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-154
               
               
               Cow position:chr22:36762204-36762065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-164
               
               
               Cow position:chr22:1819365-1819519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:12-168
               
               
               Cow position:chr22:3540953-3541103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-173
               
               
               Cow position:chr22:30641093-30640931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:12-173
               
               
               Cow position:chr22:32892865-32892701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:12-176
               
               
               Cow position:chr22:7518720-7518560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:12-181
               
               
               Cow position:chr22:39446460-39446292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):165, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr22:1710700-1710528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr22:36432805-36432971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr22:42618164-42617999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr22:1106236-1106065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr22:4656880-4657045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr22:8418630-8418459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr22:10913827-10913661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):146, 48

               
               
               Conread position:12-183
               
               
               Cow position:chr22:11697026-11697196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):148, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr22:15618773-15618602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr22:16806753-16806593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):35, 44

               
               
               Conread position:12-183
               
               
               Cow position:chr22:17198307-17198136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr22:23988019-23988190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr22:25254340-25254170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr22:43131388-43131560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr22:4583727-4583558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):119, 43

               
               
               Conread position:12-184
               
               
               Cow position:chr22:7165137-7164959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr22:11352280-11352455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr22:12749744-12749904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr22:12829444-12829615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):151, 33

               
               
               Conread position:12-184
               
               
               Cow position:chr22:14378526-14378695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):67, 138

               
               
               Conread position:12-184
               
               
               Cow position:chr22:15737399-15737231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr22:17129172-17129008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr22:30642964-30643137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr22:32698929-32698761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr22:34616481-34616303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr22:44741239-44741073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:12-185
               
               
               Cow position:chr22:19376840-19376673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):65, 140

               
               
               Conread position:12-190
               
               
               Cow position:chr22:6793714-6793883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-191
               
               
               Cow position:chr22:6622082-6622257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:12-196
               
               
               Cow position:chr22:2075837-2076023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):47, 73

               
               
               Conread position:12-205
               
               
               Cow position:chr22:13670001-13670193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):130, 90

               
               
               Conread position:12-205
               
               
               Cow position:chr22:14545756-14545950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):185, 0

               
               
               Conread position:13-177
               
               
               Cow position:chr22:5712750-5712590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:13-182
               
               
               Cow position:chr22:21890199-21890357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:13-183
               
               
               Cow position:chr22:18926524-18926354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:13-184
               
               
               Cow position:chr22:4990003-4990170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:14-154
               
               
               Cow position:chr22:13719871-13720005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:14-171
               
               
               Cow position:chr22:45788767-45788620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:14-176
               
               
               Cow position:chr22:9346883-9347042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:14-179
               
               
               Cow position:chr22:16129304-16129142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):59, 41

               
               
               Conread position:14-181
               
               
               Cow position:chr22:33373409-33373241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):41, 126

               
               
               Conread position:14-183
               
               
               Cow position:chr22:4156916-4157088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):57, 32

               
               
               Conread position:14-183
               
               
               Cow position:chr22:47525912-47525749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:14-184
               
               
               Cow position:chr22:1309570-1309733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:14-184
               
               
               Cow position:chr22:1659336-1659161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):44, 75

               
               
               Conread position:14-184
               
               
               Cow position:chr22:16251401-16251573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):38, 143

               
               
               Conread position:14-184
               
               
               Cow position:chr22:16533238-16533071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:14-184
               
               
               Cow position:chr22:40869994-40869830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):81, 39

               
               
               Conread position:14-185
               
               
               Cow position:chr22:24509495-24509675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):42, 9

               
               
               Conread position:14-185
               
               
               Cow position:chr22:30615897-30615726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-198
               
               
               Cow position:chr22:12892197-12892383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):84, 42

               
               
               Conread position:14-235
               
               
               Cow position:chr22:31173-31393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):56, 27

               
               
               Conread position:15-142
               
               
               Cow position:chr22:66550-66428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):17, 46

               
               
               Conread position:16-182
               
               
               Cow position:chr22:4535156-4535326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):39, 83

               
               
               Conread position:18-176
               
               
               Cow position:chr22:18966999-18967155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:18-179
               
               
               Cow position:chr22:12777224-12777375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:18-181
               
               
               Cow position:chr22:644620-644768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:18-181
               
               
               Cow position:chr22:11269734-11269899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):13, 98

               
               
               Conread position:18-183
               
               
               Cow position:chr22:23735852-23736014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:18-184
               
               
               Cow position:chr22:10609519-10609355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:18-207
               
               
               Cow position:chr22:37029443-37029630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):27, 131

               
               
               Conread position:19-131
               
               
               Cow position:chr22:40371531-40371422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:91
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-169
               
               
               Cow position:chr22:1320654-1320506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:19-178
               
               
               Cow position:chr22:14676847-14676688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:19-180
               
               
               Cow position:chr22:10371802-10371632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):77, 55

               
               
               Conread position:19-182
               
               
               Cow position:chr22:21568154-21567996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:19-183
               
               
               Cow position:chr22:10303178-10303014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:19-183
               
               
               Cow position:chr22:34609161-34609002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):112, 36

               
               
               Conread position:19-185
               
               
               Cow position:chr22:23801405-23801570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):109, 142

               
               
               Conread position:20-173
               
               
               Cow position:chr22:9171565-9171416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:20-182
               
               
               Cow position:chr22:2100791-2100947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:20-183
               
               
               Cow position:chr22:4542090-4541932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):15, 39

               
               
               Conread position:20-183
               
               
               Cow position:chr22:21484098-21483946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:20-184
               
               
               Cow position:chr22:12996642-12996811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):34, 77

               
               
               Conread position:20-191
               
               
               Cow position:chr22:21012545-21012375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):17, 29

               
               
               Conread position:20-201
               
               
               Cow position:chr22:24915997-24915816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):172, 31

               
               
               Conread position:21-156
               
               
               Cow position:chr22:16058135-16058001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):13, 83

               
               
               Conread position:21-156
               
               
               Cow position:chr22:16916771-16916905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:108
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:21-184
               
               
               Cow position:chr22:26075079-26074918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):13, 19

               
               
               Conread position:21-185
               
               
               Cow position:chr22:23804823-23804980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:22-155
               
               
               Cow position:chr22:14141185-14141316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:26-156
               
               
               Cow position:chr22:41417016-41417142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:27-178
               
               
               Cow position:chr22:33332994-33332839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):41, 104

               
               
               Conread position:27-183
               
               
               Cow position:chr22:23126189-23126345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:29-183
               
               
               Cow position:chr22:25846172-25846324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:34-148
               
               
               Cow position:chr22:39907943-39908056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:34-202
               
               
               Cow position:chr22:11468527-11468353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:36-185
               
               
               Cow position:chr22:18196654-18196507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:36-196
               
               
               Cow position:chr22:6705613-6705452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):24, 111

               
               
               Conread position:38-168
               
               
               Cow position:chr22:27052596-27052720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:38-214
               
               
               Cow position:chr22:10585444-10585618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):136, 17

               
               
               Conread position:39-168
               
               
               Cow position:chr22:25811807-25811936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:39-170
               
               
               Cow position:chr22:20609365-20609234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:39-185
               
               
               Cow position:chr22:23833436-23833288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):100, 14

               
               
               Conread position:39-207
               
               
               Cow position:chr22:1911810-1911640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):31, 157

               
               
               Conread position:41-161
               
               
               Cow position:chr22:23397833-23397954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:95
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:41-179
               
               
               Cow position:chr22:12914752-12914616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:41-180
               
               
               Cow position:chr22:21215851-21215714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:41-183
               
               
               Cow position:chr22:10533730-10533596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:42-183
               
               
               Cow position:chr22:25943616-25943473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:44-179
               
               
               Cow position:chr22:44684622-44684489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:44-181
               
               
               Cow position:chr22:45505868-45506001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:44-182
               
               
               Cow position:chr22:17294802-17294937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:48-177
               
               
               Cow position:chr22:27328760-27328890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:48-182
               
               
               Cow position:chr22:3950385-3950251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:109
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):123, 94

               
               
               Conread position:48-183
               
               
               Cow position:chr22:3997886-3997751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-183
               
               
               Cow position:chr22:8115955-8116090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-183
               
               
               Cow position:chr22:21530226-21530362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:48-183
               
               
               Cow position:chr22:24032082-24032217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr22:2502959-2502823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):45, 113

               
               
               Conread position:48-184
               
               
               Cow position:chr22:3965319-3965183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr22:10421166-10421029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr22:10553556-10553688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr22:13878310-13878178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr22:16044283-16044419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr22:23176307-23176444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:48-191
               
               
               Cow position:chr22:31154086-31153943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):45, 15

               
               
               Conread position:48-195
               
               
               Cow position:chr22:34606722-34606569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):111, 29

               
               
               Conread position:49-170
               
               
               Cow position:chr22:31309016-31308895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:93
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:49-177
               
               
               Cow position:chr22:28120858-28120728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:50-170
               
               
               Cow position:chr22:2516776-2516896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:50-184
               
               
               Cow position:chr22:6326575-6326441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:50-191
               
               
               Cow position:chr22:26123029-26122887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:51-177
               
               
               Cow position:chr22:3910086-3909960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:51-184
               
               
               Cow position:chr22:10286100-10285965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):86, 54

               
               
               Conread position:51-187
               
               
               Cow position:chr22:3252831-3252970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):67, 13

               
               
               Conread position:55-184
               
               
               Cow position:chr22:10752415-10752545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:56-173
               
               
               Cow position:chr22:6122760-6122876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:92
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr22:534624-534496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr22:877642-877512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr22:2627706-2627573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr22:8840730-8840602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr22:12967945-12968072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr22:18126611-18126736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr22:23750772-23750897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr22:23857170-23857043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr22:24175771-24175892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr22:25540124-25539996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr22:34750798-34750672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:56-201
               
               
               Cow position:chr22:2912465-2912605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:56-210
               
               
               Cow position:chr22:43496059-43495904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):147, 36

               
               
               Conread position:57-183
               
               
               Cow position:chr22:30049442-30049568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:57-198
               
               
               Cow position:chr22:24610971-24611109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:59-184
               
               
               Cow position:chr22:23398282-23398407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:60-177
               
               
               Cow position:chr22:20034948-20034833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:93
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:60-183
               
               
               Cow position:chr22:1279264-1279387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:95
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-184
               
               
               Cow position:chr22:11344624-11344507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:64-184
               
               
               Cow position:chr22:14924615-14924735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-184
               
               
               Cow position:chr22:17814349-17814230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:64-184
               
               
               Cow position:chr22:22155720-22155602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:95
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:64-203
               
               
               Cow position:chr22:2524080-2523941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):75, 85

               
               
               Conread position:67-181
               
               
               Cow position:chr22:7852076-7851964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:91
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:67-181
               
               
               Cow position:chr22:12599485-12599371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:67-184
               
               
               Cow position:chr22:34712839-34712723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:96
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:68-173
               
               
               Cow position:chr22:26316569-26316464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:86
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:68-184
               
               
               Cow position:chr22:23121889-23122009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:69-184
               
               
               Cow position:chr22:44180705-44180590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:94
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:77-183
               
               
               Cow position:chr22:16265784-16265678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:86
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:79-184
               
               
               Cow position:chr22:29842602-29842707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:87
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:83-183
               
               
               Cow position:chr22:34398358-34398458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:85
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-121
               
               
               Cow position:chr23:27307932-27307811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:100
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:3-143
               
               
               Cow position:chr23:4521700-4521841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:3-145
               
               
               Cow position:chr23:39813683-39813539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:3-147
               
               
               Cow position:chr23:10676035-10675891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-155
               
               
               Cow position:chr23:28580401-28580555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-168
               
               
               Cow position:chr23:17792243-17792407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):155, 77

               
               
               Conread position:3-175
               
               
               Cow position:chr23:7856943-7856771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-178
               
               
               Cow position:chr23:25363755-25363580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-178
               
               
               Cow position:chr23:27859972-27859797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-181
               
               
               Cow position:chr23:39864837-39864658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):65, 10

               
               
               Conread position:3-183
               
               
               Cow position:chr23:18384900-18384723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr23:24929888-24930068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr23:32621469-32621287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:150
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr23:38854407-38854586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):36, 56

               
               
               Conread position:3-183
               
               
               Cow position:chr23:39302875-39302702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):172, 103

               
               
               Conread position:3-183
               
               
               Cow position:chr23:40737834-40738015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:3-184
               
               
               Cow position:chr23:18802086-18802267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-185
               
               
               Cow position:chr23:3247770-3247588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):166, 68

               
               
               Conread position:3-190
               
               
               Cow position:chr23:32173678-32173865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-191
               
               
               Cow position:chr23:349540-349727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:3-191
               
               
               Cow position:chr23:9734601-9734406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):59, 156

               
               
               Conread position:3-191
               
               
               Cow position:chr23:25676439-25676625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):152, 0

               
               
               Conread position:3-194
               
               
               Cow position:chr23:26604437-26604247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):65, 156

               
               
               Conread position:3-198
               
               
               Cow position:chr23:39368520-39368324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):191, 139

               
               
               Conread position:4-166
               
               
               Cow position:chr23:38994417-38994254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:4-191
               
               
               Cow position:chr23:7398696-7398509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:5-179
               
               
               Cow position:chr23:22530258-22530431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:5-198
               
               
               Cow position:chr23:32126484-32126293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):145, 110

               
               
               Conread position:7-184
               
               
               Cow position:chr23:32479840-32480023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):141, 48

               
               
               Conread position:8-127
               
               
               Cow position:chr23:2563840-2563722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:8-127
               
               
               Cow position:chr23:38738491-38738373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:94
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:8-128
               
               
               Cow position:chr23:2186886-2187006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-142
               
               
               Cow position:chr23:27526762-27526629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:8-145
               
               
               Cow position:chr23:10844735-10844597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):47, 65

               
               
               Conread position:8-147
               
               
               Cow position:chr23:19739386-19739526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr23:18387411-18387552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:8-149
               
               
               Cow position:chr23:3983013-3983154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):138, 58

               
               
               Conread position:8-149
               
               
               Cow position:chr23:20725515-20725650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:8-150
               
               
               Cow position:chr23:22324116-22324252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-150
               
               
               Cow position:chr23:29972575-29972424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:8-152
               
               
               Cow position:chr23:35527258-35527114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-153
               
               
               Cow position:chr23:9726363-9726508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-155
               
               
               Cow position:chr23:534402-534259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-155
               
               
               Cow position:chr23:30617300-30617447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-157
               
               
               Cow position:chr23:18740039-18740188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-160
               
               
               Cow position:chr23:4803139-4802985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):24, 63

               
               
               Conread position:8-164
               
               
               Cow position:chr23:2395422-2395575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-164
               
               
               Cow position:chr23:12138184-12138032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:8-167
               
               
               Cow position:chr23:5426613-5426455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):62, 150

               
               
               Conread position:8-168
               
               
               Cow position:chr23:4416109-4416269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-168
               
               
               Cow position:chr23:39125249-39125408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:8-171
               
               
               Cow position:chr23:6768085-6767921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:8-172
               
               
               Cow position:chr23:22238641-22238807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:8-172
               
               
               Cow position:chr23:24718627-24718787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-172
               
               
               Cow position:chr23:40500921-40501083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):84, 47

               
               
               Conread position:8-173
               
               
               Cow position:chr23:38206-38041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-173
               
               
               Cow position:chr23:18611586-18611749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):147, 0

               
               
               Conread position:8-173
               
               
               Cow position:chr23:25864518-25864686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):62, 83

               
               
               Conread position:8-174
               
               
               Cow position:chr23:29330486-29330320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-175
               
               
               Cow position:chr23:40790141-40789986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-176
               
               
               Cow position:chr23:204465-204291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):54, 89

               
               
               Conread position:8-177
               
               
               Cow position:chr23:5795652-5795489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-177
               
               
               Cow position:chr23:36200575-36200414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-178
               
               
               Cow position:chr23:5870014-5870184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-178
               
               
               Cow position:chr23:18823160-18822998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr23:10497872-10497707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):40, 50

               
               
               Conread position:8-179
               
               
               Cow position:chr23:17012566-17012731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr23:19179193-19179368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):61, 11

               
               
               Conread position:8-179
               
               
               Cow position:chr23:29345601-29345756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr23:3890396-3890565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):83, 70

               
               
               Conread position:8-181
               
               
               Cow position:chr23:5617751-5617579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr23:809683-809510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr23:3281934-3282117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr23:10416252-10416416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):42, 59

               
               
               Conread position:8-182
               
               
               Cow position:chr23:11212680-11212512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr23:12363443-12363613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr23:35965325-35965151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr23:39267961-39267789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr23:187355-187182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr23:799490-799675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr23:5436825-5436999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr23:11081434-11081260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr23:12091183-12091357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):114, 48

               
               
               Conread position:8-183
               
               
               Cow position:chr23:14140785-14140610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr23:20248518-20248691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr23:21788590-21788763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):60, 46

               
               
               Conread position:8-183
               
               
               Cow position:chr23:26741311-26741487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr23:30867123-30867295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr23:40348470-40348641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr23:1656070-1655897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr23:1798289-1798113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr23:1954454-1954282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr23:3835405-3835592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):56, 149

               
               
               Conread position:8-184
               
               
               Cow position:chr23:15743267-15743094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr23:16447518-16447684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr23:21336293-21336481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr23:35656585-35656414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr23:37066032-37065852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr23:37948865-37948690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):65, 39

               
               
               Conread position:8-184
               
               
               Cow position:chr23:38454987-38455176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr23:41348452-41348621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:8-185
               
               
               Cow position:chr23:20557666-20557843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-185
               
               
               Cow position:chr23:41472801-41472623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):50, 116

               
               
               Conread position:8-187
               
               
               Cow position:chr23:22804899-22804724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-190
               
               
               Cow position:chr23:9226450-9226281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr23:307634-307451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:147
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr23:1884997-1885177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr23:4972944-4972762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr23:5436464-5436647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:147
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr23:11129410-11129229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:149
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr23:13410584-13410761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):164, 61

               
               
               Conread position:8-191
               
               
               Cow position:chr23:21423942-21423763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr23:26794737-26794917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):61, 111

               
               
               Conread position:8-191
               
               
               Cow position:chr23:33711938-33711756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:8-192
               
               
               Cow position:chr23:344002-344192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):47, 134

               
               
               Conread position:8-193
               
               
               Cow position:chr23:769364-769552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):159, 63

               
               
               Conread position:8-197
               
               
               Cow position:chr23:16664227-16664413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):177, 47

               
               
               Conread position:8-208
               
               
               Cow position:chr23:24779364-24779564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:153
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:9-149
               
               
               Cow position:chr23:4338172-4338309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):8, 47

               
               
               Conread position:9-178
               
               
               Cow position:chr23:1536495-1536330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):85, 51

               
               
               Conread position:9-183
               
               
               Cow position:chr23:11225029-11224859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:9-184
               
               
               Cow position:chr23:7696721-7696562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:9-184
               
               
               Cow position:chr23:39083630-39083453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):7, 24

               
               
               Conread position:9-191
               
               
               Cow position:chr23:1760658-1760850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:10-128
               
               
               Cow position:chr23:33244361-33244249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:10-161
               
               
               Cow position:chr23:18489826-18489682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:10-172
               
               
               Cow position:chr23:21628338-21628174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:10-182
               
               
               Cow position:chr23:25990264-25990432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):59, 24

               
               
               Conread position:10-183
               
               
               Cow position:chr23:39333345-39333518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:10-184
               
               
               Cow position:chr23:1194321-1194489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:10-191
               
               
               Cow position:chr23:5881347-5881522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:10-197
               
               
               Cow position:chr23:35239527-35239335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):155, 125

               
               
               Conread position:11-136
               
               
               Cow position:chr23:26975294-26975414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:11-148
               
               
               Cow position:chr23:2160469-2160601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:11-148
               
               
               Cow position:chr23:23104317-23104449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:11-148
               
               
               Cow position:chr23:37993349-37993210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:11-149
               
               
               Cow position:chr23:15056403-15056534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:11-149
               
               
               Cow position:chr23:29607247-29607114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:11-149
               
               
               Cow position:chr23:35718486-35718349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:11-152
               
               
               Cow position:chr23:28814552-28814410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:11-155
               
               
               Cow position:chr23:33232527-33232670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:11-160
               
               
               Cow position:chr23:9387857-9388001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:11-161
               
               
               Cow position:chr23:17462765-17462615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-164
               
               
               Cow position:chr23:28529778-28529932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:11-167
               
               
               Cow position:chr23:22573733-22573888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:11-175
               
               
               Cow position:chr23:16780383-16780547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):59, 16

               
               
               Conread position:11-175
               
               
               Cow position:chr23:18874230-18874403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):44, 86

               
               
               Conread position:11-177
               
               
               Cow position:chr23:4003822-4003656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-181
               
               
               Cow position:chr23:10888441-10888280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:11-181
               
               
               Cow position:chr23:39109108-39108938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):59, 45

               
               
               Conread position:11-183
               
               
               Cow position:chr23:2471178-2471006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr23:8293683-8293505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr23:13137766-13137932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr23:16582734-16582906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr23:35512084-35512260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):40, 74

               
               
               Conread position:11-183
               
               
               Cow position:chr23:39381592-39381421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):49, 18

               
               
               Conread position:11-184
               
               
               Cow position:chr23:1759420-1759249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr23:3190953-3191122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr23:3234605-3234779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr23:12405648-12405817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr23:34356814-34356645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-185
               
               
               Cow position:chr23:18739288-18739463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:145
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:11-190
               
               
               Cow position:chr23:25557051-25556875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:11-205
               
               
               Cow position:chr23:5314703-5314506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):65, 92

               
               
               Conread position:11-209
               
               
               Cow position:chr23:26949364-26949175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:12-148
               
               
               Cow position:chr23:40965807-40965943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-149
               
               
               Cow position:chr23:14651536-14651671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:12-154
               
               
               Cow position:chr23:10853219-10853078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:12-156
               
               
               Cow position:chr23:4291529-4291385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-156
               
               
               Cow position:chr23:13380884-13380740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-161
               
               
               Cow position:chr23:9876827-9876973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:12-164
               
               
               Cow position:chr23:25933320-25933181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:12-173
               
               
               Cow position:chr23:11369395-11369242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-176
               
               
               Cow position:chr23:22826281-22826430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:12-178
               
               
               Cow position:chr23:39248225-39248379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-179
               
               
               Cow position:chr23:17597595-17597434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-181
               
               
               Cow position:chr23:14580915-14580755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr23:4327519-4327696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr23:8698597-8698425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr23:18238352-18238522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr23:18415882-18416047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr23:34416736-34416565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr23:1426811-1426983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr23:1701346-1701174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr23:8837515-8837687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr23:24700905-24701077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):54, 143

               
               
               Conread position:12-184
               
               
               Cow position:chr23:36172707-36172521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:12-185
               
               
               Cow position:chr23:33434836-33434662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:12-192
               
               
               Cow position:chr23:27849168-27848991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:13-175
               
               
               Cow position:chr23:1480813-1480652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):158, 0

               
               
               Conread position:13-182
               
               
               Cow position:chr23:7845462-7845298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:13-182
               
               
               Cow position:chr23:9220576-9220414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:13-185
               
               
               Cow position:chr23:10829408-10829580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-144
               
               
               Cow position:chr23:3270471-3270341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-155
               
               
               Cow position:chr23:21664473-21664336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:14-158
               
               
               Cow position:chr23:25087229-25087374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:14-168
               
               
               Cow position:chr23:39056930-39056774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:14-179
               
               
               Cow position:chr23:4343654-4343489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-182
               
               
               Cow position:chr23:26986097-26986266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):46, 120

               
               
               Conread position:14-182
               
               
               Cow position:chr23:36022620-36022780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:14-183
               
               
               Cow position:chr23:3244745-3244910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):67, 106

               
               
               Conread position:14-183
               
               
               Cow position:chr23:13520619-13520452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):148, 41

               
               
               Conread position:14-183
               
               
               Cow position:chr23:35930120-35929954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:14-185
               
               
               Cow position:chr23:38992923-38993089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):158, 50

               
               
               Conread position:14-191
               
               
               Cow position:chr23:283231-283397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:14-210
               
               
               Cow position:chr23:25938203-25938409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):42, 127

               
               
               Conread position:16-183
               
               
               Cow position:chr23:31161487-31161643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:18-182
               
               
               Cow position:chr23:3204951-3204783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:18-183
               
               
               Cow position:chr23:25675529-25675696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):59, 42

               
               
               Conread position:18-184
               
               
               Cow position:chr23:20563863-20563699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:19-183
               
               
               Cow position:chr23:16797638-16797801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:19-184
               
               
               Cow position:chr23:23409887-23409736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:19-184
               
               
               Cow position:chr23:26283894-26283727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):51, 104

               
               
               Conread position:19-184
               
               
               Cow position:chr23:33153021-33153190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):56, 121

               
               
               Conread position:19-207
               
               
               Cow position:chr23:18417250-18417075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:20-181
               
               
               Cow position:chr23:3952169-3952008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:20-182
               
               
               Cow position:chr23:1337143-1337299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:20-184
               
               
               Cow position:chr23:4968363-4968521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:20-191
               
               
               Cow position:chr23:56991-57168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:20-191
               
               
               Cow position:chr23:306689-306518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:21-184
               
               
               Cow position:chr23:29069277-29069438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):21, 27

               
               
               Conread position:21-184
               
               
               Cow position:chr23:39775888-39775728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):161, 34

               
               
               Conread position:26-175
               
               
               Cow position:chr23:3979601-3979751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:26-179
               
               
               Cow position:chr23:5786002-5785852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:28-184
               
               
               Cow position:chr23:38267243-38267395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:30-184
               
               
               Cow position:chr23:18697866-18698023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:31-156
               
               
               Cow position:chr23:164915-164789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:32-163
               
               
               Cow position:chr23:10595307-10595437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:33-174
               
               
               Cow position:chr23:26029307-26029162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:33-183
               
               
               Cow position:chr23:33621996-33622146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:35-155
               
               
               Cow position:chr23:13553549-13553670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:103
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:35-191
               
               
               Cow position:chr23:29480038-29479884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):32, 116

               
               
               Conread position:36-149
               
               
               Cow position:chr23:38118108-38117995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:94
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:37-183
               
               
               Cow position:chr23:28206747-28206601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:41-177
               
               
               Cow position:chr23:30951104-30950964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:42-173
               
               
               Cow position:chr23:3484415-3484286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:43-191
               
               
               Cow position:chr23:28944925-28945073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:44-149
               
               
               Cow position:chr23:35503916-35503810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:87
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:44-187
               
               
               Cow position:chr23:21309268-21309412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):24, 57

               
               
               Conread position:47-184
               
               
               Cow position:chr23:5686482-5686619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-152
               
               
               Cow position:chr23:3471145-3471041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:84
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-167
               
               
               Cow position:chr23:26591773-26591891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:48-178
               
               
               Cow position:chr23:23114197-23114067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-182
               
               
               Cow position:chr23:5203794-5203927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:48-182
               
               
               Cow position:chr23:13511864-13511727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:48-182
               
               
               Cow position:chr23:19273788-19273659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:48-183
               
               
               Cow position:chr23:4877499-4877364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr23:4241503-4241635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr23:18402154-18402287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr23:21438636-21438496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr23:27790156-27790020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):22, 76

               
               
               Conread position:48-184
               
               
               Cow position:chr23:32546131-32546262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):9, 43

               
               
               Conread position:48-184
               
               
               Cow position:chr23:39780893-39780757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-191
               
               
               Cow position:chr23:13673893-13674036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-207
               
               
               Cow position:chr23:1397900-1398058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):145, 0

               
               
               Conread position:49-180
               
               
               Cow position:chr23:14569363-14569494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:105
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:49-184
               
               
               Cow position:chr23:1923700-1923834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:49-184
               
               
               Cow position:chr23:4336204-4336072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:49-185
               
               
               Cow position:chr23:4966956-4966823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:49-190
               
               
               Cow position:chr23:31299310-31299172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:51-182
               
               
               Cow position:chr23:18106834-18106966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):21, 37

               
               
               Conread position:53-184
               
               
               Cow position:chr23:1936508-1936640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:55-173
               
               
               Cow position:chr23:7574493-7574611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:55-182
               
               
               Cow position:chr23:10553877-10554004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:97
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:55-184
               
               
               Cow position:chr23:6158066-6158196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):77, 58

               
               
               Conread position:55-184
               
               
               Cow position:chr23:14895542-14895671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:55-187
               
               
               Cow position:chr23:3105016-3104884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-169
               
               
               Cow position:chr23:5174671-5174558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:91
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-171
               
               
               Cow position:chr23:1503702-1503587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:92
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-175
               
               
               Cow position:chr23:1929445-1929322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:56-182
               
               
               Cow position:chr23:13946168-13946043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:56-183
               
               
               Cow position:chr23:40648600-40648728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:57-153
               
               
               Cow position:chr23:38845970-38845875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:83
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:57-183
               
               
               Cow position:chr23:38845728-38845602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):101, 11

               
               
               Conread position:57-184
               
               
               Cow position:chr23:3244339-3244466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:57-192
               
               
               Cow position:chr23:1767960-1767823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:58-185
               
               
               Cow position:chr23:6994854-6994981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:59-201
               
               
               Cow position:chr23:20388526-20388664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:60-184
               
               
               Cow position:chr23:13599467-13599345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:62-184
               
               
               Cow position:chr23:4054341-4054220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:62-184
               
               
               Cow position:chr23:25726322-25726201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:63-184
               
               
               Cow position:chr23:16699918-16700039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-156
               
               
               Cow position:chr23:5386968-5387060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:93
               
               
               Alignm identity:80
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-182
               
               
               Cow position:chr23:4104518-4104403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:65-182
               
               
               Cow position:chr23:23904207-23904323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:92
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:67-182
               
               
               Cow position:chr23:29458979-29459094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:92
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:68-173
               
               
               Cow position:chr23:35254047-35254153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:87
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:68-183
               
               
               Cow position:chr23:4864550-4864435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:90
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:70-183
               
               
               Cow position:chr23:2406018-2405902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:95
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:71-185
               
               
               Cow position:chr23:35247483-35247369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-182
               
               
               Cow position:chr24:28990718-28990539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):67, 57

               
               
               Conread position:1-183
               
               
               Cow position:chr24:6008015-6008194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):172, 7

               
               
               Conread position:1-184
               
               
               Cow position:chr24:3494036-3493860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:1-184
               
               
               Cow position:chr24:19187087-19186918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:2-181
               
               
               Cow position:chr24:26848576-26848754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):19, 49

               
               
               Conread position:2-184
               
               
               Cow position:chr24:41406059-41405866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:2-190
               
               
               Cow position:chr24:3542457-3542270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):175, 0

               
               
               Conread position:3-149
               
               
               Cow position:chr24:17060064-17060202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:3-155
               
               
               Cow position:chr24:17294041-17294192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:3-156
               
               
               Cow position:chr24:27271083-27270930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-156
               
               
               Cow position:chr24:36010580-36010424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):52, 117

               
               
               Conread position:3-161
               
               
               Cow position:chr24:250381-250539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-170
               
               
               Cow position:chr24:20323344-20323512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:3-172
               
               
               Cow position:chr24:29587154-29586988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:3-174
               
               
               Cow position:chr24:37252311-37252145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):88, 60

               
               
               Conread position:3-174
               
               
               Cow position:chr24:44776020-44776191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-178
               
               
               Cow position:chr24:21715195-21715369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:3-178
               
               
               Cow position:chr24:26880909-26880735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:3-182
               
               
               Cow position:chr24:12121053-12120874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-182
               
               
               Cow position:chr24:44896195-44896017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):176, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr24:6742379-6742198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr24:13586837-13587015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):132, 52

               
               
               Conread position:3-183
               
               
               Cow position:chr24:17308987-17309160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr24:19730936-19730756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr24:19965922-19966099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr24:23863472-23863652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr24:24810680-24810495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr24:37267819-37267639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-188
               
               
               Cow position:chr24:18401163-18401344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):147, 0

               
               
               Conread position:3-191
               
               
               Cow position:chr24:17407545-17407358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:3-194
               
               
               Cow position:chr24:6515277-6515467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):187, 72

               
               
               Conread position:3-196
               
               
               Cow position:chr24:22647182-22647376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):48, 24

               
               
               Conread position:3-199
               
               
               Cow position:chr24:4822394-4822198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):177, 190

               
               
               Conread position:3-206
               
               
               Cow position:chr24:23575005-23575208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:5-148
               
               
               Cow position:chr24:11735918-11736059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:5-154
               
               
               Cow position:chr24:15448617-15448469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:5-170
               
               
               Cow position:chr24:26569611-26569447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):87, 50

               
               
               Conread position:7-156
               
               
               Cow position:chr24:36554551-36554694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-126
               
               
               Cow position:chr24:124711-124593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-130
               
               
               Cow position:chr24:43027072-43027197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:8-139
               
               
               Cow position:chr24:28476660-28476528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:8-140
               
               
               Cow position:chr24:38427961-38428093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-143
               
               
               Cow position:chr24:27719381-27719510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-147
               
               
               Cow position:chr24:11035364-11035493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr24:14373429-14373570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr24:15473678-15473537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):71, 47

               
               
               Conread position:8-148
               
               
               Cow position:chr24:28234190-28234054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):11, 38

               
               
               Conread position:8-148
               
               
               Cow position:chr24:30236021-30235882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:8-149
               
               
               Cow position:chr24:24013914-24013768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:8-156
               
               
               Cow position:chr24:25947710-25947858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-159
               
               
               Cow position:chr24:18702549-18702399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:8-160
               
               
               Cow position:chr24:38693728-38693880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):135, 15

               
               
               Conread position:8-164
               
               
               Cow position:chr24:28788007-28787850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):30, 64

               
               
               Conread position:8-167
               
               
               Cow position:chr24:23046746-23046905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-168
               
               
               Cow position:chr24:18810983-18810825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):147, 0

               
               
               Conread position:8-168
               
               
               Cow position:chr24:25142766-25142601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:8-171
               
               
               Cow position:chr24:33098323-33098484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-174
               
               
               Cow position:chr24:18696031-18695865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):62, 152

               
               
               Conread position:8-174
               
               
               Cow position:chr24:22887865-22888032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):55, 75

               
               
               Conread position:8-175
               
               
               Cow position:chr24:32739114-32739285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):41, 99

               
               
               Conread position:8-176
               
               
               Cow position:chr24:24490876-24491033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:8-177
               
               
               Cow position:chr24:27553249-27553078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):45, 21

               
               
               Conread position:8-177
               
               
               Cow position:chr24:44040862-44041022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr24:7757918-7757753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr24:16995027-16994861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):148, 52

               
               
               Conread position:8-179
               
               
               Cow position:chr24:40055360-40055530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr24:42194596-42194759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr24:42984544-42984372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:8-180
               
               
               Cow position:chr24:162155-161983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-180
               
               
               Cow position:chr24:18874671-18874841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:8-180
               
               
               Cow position:chr24:39903859-39904024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr24:11036689-11036856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr24:14551609-14551446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):93, 47

               
               
               Conread position:8-181
               
               
               Cow position:chr24:18405130-18405300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):154, 63

               
               
               Conread position:8-181
               
               
               Cow position:chr24:32609798-32609626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr24:33238105-33238286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr24:36286717-36286548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr24:43219927-43220095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr24:2261819-2261645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr24:13626435-13626261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):70, 48

               
               
               Conread position:8-182
               
               
               Cow position:chr24:16641062-16640887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr24:21524214-21524042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):62, 37

               
               
               Conread position:8-182
               
               
               Cow position:chr24:22079612-22079441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr24:27844384-27844550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr24:30313880-30314048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):76, 47

               
               
               Conread position:8-182
               
               
               Cow position:chr24:32230355-32230530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):69, 33

               
               
               Conread position:8-182
               
               
               Cow position:chr24:37974834-37975003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):11, 48

               
               
               Conread position:8-182
               
               
               Cow position:chr24:39304762-39304943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr24:390249-390081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr24:6740026-6740191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr24:8676974-8676800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr24:13888854-13888681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):152, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr24:14550939-14550772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr24:18730496-18730321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr24:18750859-18750680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):154, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr24:19624014-19623833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):51, 167

               
               
               Conread position:8-183
               
               
               Cow position:chr24:19800988-19800824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr24:20801196-20801369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr24:21606527-21606696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr24:22194563-22194391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):142, 47

               
               
               Conread position:8-183
               
               
               Cow position:chr24:23556188-23556361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):118, 47

               
               
               Conread position:8-183
               
               
               Cow position:chr24:25194415-25194242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr24:28342510-28342333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr24:34272968-34272786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr24:2992731-2992903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:144
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr24:5152675-5152499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:141
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr24:11836252-11836428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr24:15288976-15288803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr24:19637735-19637559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):108, 47

               
               
               Conread position:8-184
               
               
               Cow position:chr24:27202235-27202065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):8, 53

               
               
               Conread position:8-184
               
               
               Cow position:chr24:27448799-27448620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):55, 87

               
               
               Conread position:8-184
               
               
               Cow position:chr24:27906587-27906413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):124, 27

               
               
               Conread position:8-184
               
               
               Cow position:chr24:30229623-30229449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):93, 47

               
               
               Conread position:8-184
               
               
               Cow position:chr24:30483795-30483972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):127, 47

               
               
               Conread position:8-184
               
               
               Cow position:chr24:31159779-31159595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):53, 159

               
               
               Conread position:8-184
               
               
               Cow position:chr24:32204635-32204819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr24:39910882-39911058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:145
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):163, 88

               
               
               Conread position:8-185
               
               
               Cow position:chr24:27040199-27040023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:8-185
               
               
               Cow position:chr24:28722026-28721864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:8-185
               
               
               Cow position:chr24:34465344-34465531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:8-186
               
               
               Cow position:chr24:11028538-11028715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:8-187
               
               
               Cow position:chr24:27066379-27066203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:8-187
               
               
               Cow position:chr24:43832671-43832501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr24:21519579-21519398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):111, 150

               
               
               Conread position:8-191
               
               
               Cow position:chr24:44987223-44987406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-205
               
               
               Cow position:chr24:15353593-15353397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:8-208
               
               
               Cow position:chr24:18484844-18485040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):61, 81

               
               
               Conread position:9-130
               
               
               Cow position:chr24:27386842-27386963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:98
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:9-175
               
               
               Cow position:chr24:17374574-17374410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:9-183
               
               
               Cow position:chr24:2693772-2693945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:9-183
               
               
               Cow position:chr24:43406108-43405936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:9-184
               
               
               Cow position:chr24:28700196-28700026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):82, 46

               
               
               Conread position:9-184
               
               
               Cow position:chr24:39523302-39523473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:9-191
               
               
               Cow position:chr24:38006564-38006739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):63, 137

               
               
               Conread position:10-156
               
               
               Cow position:chr24:34006060-34006205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:10-182
               
               
               Cow position:chr24:14989349-14989178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:10-182
               
               
               Cow position:chr24:28470517-28470702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:10-184
               
               
               Cow position:chr24:32890900-32891068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:145
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:10-190
               
               
               Cow position:chr24:41244658-41244481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):133, 25

               
               
               Conread position:11-148
               
               
               Cow position:chr24:41916403-41916271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:11-149
               
               
               Cow position:chr24:22221526-22221388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-150
               
               
               Cow position:chr24:26588364-26588230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:11-164
               
               
               Cow position:chr24:20017279-20017432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-168
               
               
               Cow position:chr24:35365561-35365712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):62, 41

               
               
               Conread position:11-176
               
               
               Cow position:chr24:27713264-27713421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:11-178
               
               
               Cow position:chr24:16510118-16509959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-178
               
               
               Cow position:chr24:43028182-43028346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr24:20943306-20943146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr24:29539784-29539951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):69, 51

               
               
               Conread position:11-182
               
               
               Cow position:chr24:34896555-34896721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr24:5447119-5447291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr24:5632270-5632444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):54, 127

               
               
               Conread position:11-183
               
               
               Cow position:chr24:16645172-16645343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):77, 53

               
               
               Conread position:11-183
               
               
               Cow position:chr24:19000189-19000024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr24:36303171-36303340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):61, 21

               
               
               Conread position:11-184
               
               
               Cow position:chr24:15861445-15861622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr24:33944552-33944377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr24:34301890-34302060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr24:35310872-35310697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):151, 69

               
               
               Conread position:11-184
               
               
               Cow position:chr24:38478249-38478416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr24:41565954-41566119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:11-191
               
               
               Cow position:chr24:29782310-29782134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):62, 47

               
               
               Conread position:11-193
               
               
               Cow position:chr24:5434917-5435100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:11-197
               
               
               Cow position:chr24:41423742-41423564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):155, 39

               
               
               Conread position:11-198
               
               
               Cow position:chr24:17751962-17752150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):43, 81

               
               
               Conread position:12-130
               
               
               Cow position:chr24:18817534-18817416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-139
               
               
               Cow position:chr24:16303536-16303656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:12-148
               
               
               Cow position:chr24:27284969-27284828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:12-152
               
               
               Cow position:chr24:26808736-26808599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):23, 63

               
               
               Conread position:12-171
               
               
               Cow position:chr24:18755905-18755746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-173
               
               
               Cow position:chr24:4635020-4635181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-176
               
               
               Cow position:chr24:7113378-7113206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:12-176
               
               
               Cow position:chr24:28600290-28600451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):81, 38

               
               
               Conread position:12-178
               
               
               Cow position:chr24:43373207-43373046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):56, 44

               
               
               Conread position:12-179
               
               
               Cow position:chr24:20225892-20225721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):43, 152

               
               
               Conread position:12-181
               
               
               Cow position:chr24:18741420-18741593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:12-181
               
               
               Cow position:chr24:36485639-36485824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr24:17104424-17104592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr24:22133310-22133149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr24:24457094-24457272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):38, 84

               
               
               Conread position:12-183
               
               
               Cow position:chr24:352459-352629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr24:17689463-17689634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):57, 82

               
               
               Conread position:12-183
               
               
               Cow position:chr24:22420108-22419937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr24:22567251-22567080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):120, 132

               
               
               Conread position:12-183
               
               
               Cow position:chr24:26928796-26928967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr24:41980515-41980682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr24:18668728-18668554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):36, 126

               
               
               Conread position:12-184
               
               
               Cow position:chr24:19535108-19535280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-191
               
               
               Cow position:chr24:16089377-16089197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):49, 82

               
               
               Conread position:13-124
               
               
               Cow position:chr24:12241865-12241754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:90
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:13-183
               
               
               Cow position:chr24:42862769-42862601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:13-184
               
               
               Cow position:chr24:29677766-29677940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:14-154
               
               
               Cow position:chr24:27149527-27149389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:14-182
               
               
               Cow position:chr24:31816720-31816556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:14-183
               
               
               Cow position:chr24:10242637-10242806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-183
               
               
               Cow position:chr24:26001532-26001364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:14-184
               
               
               Cow position:chr24:42726603-42726426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:14-186
               
               
               Cow position:chr24:27810294-27810132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:14-191
               
               
               Cow position:chr24:12200264-12200440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:14-191
               
               
               Cow position:chr24:36711341-36711163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:14-200
               
               
               Cow position:chr24:43499803-43499620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):86, 40

               
               
               Conread position:15-171
               
               
               Cow position:chr24:398960-399113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:18-141
               
               
               Cow position:chr24:43445874-43445995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:18-172
               
               
               Cow position:chr24:35576396-35576550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):32, 54

               
               
               Conread position:18-183
               
               
               Cow position:chr24:19599047-19598882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:18-183
               
               
               Cow position:chr24:37395068-37395234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):38, 65

               
               
               Conread position:18-184
               
               
               Cow position:chr24:29605889-29606057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):52, 23

               
               
               Conread position:18-204
               
               
               Cow position:chr24:40130277-40130085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):48, 182

               
               
               Conread position:19-136
               
               
               Cow position:chr24:27791600-27791711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:96
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-168
               
               
               Cow position:chr24:39218405-39218560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-173
               
               
               Cow position:chr24:42008158-42008009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:19-177
               
               
               Cow position:chr24:9300768-9300611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):58, 79

               
               
               Conread position:19-183
               
               
               Cow position:chr24:3656225-3656389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:19-183
               
               
               Cow position:chr24:32979033-32979191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-184
               
               
               Cow position:chr24:28690831-28690661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):51, 132

               
               
               Conread position:20-131
               
               
               Cow position:chr24:3193134-3193244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:89
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:20-173
               
               
               Cow position:chr24:39960863-39961011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:20-181
               
               
               Cow position:chr24:31383249-31383099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:20-184
               
               
               Cow position:chr24:26554457-26554621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:21-164
               
               
               Cow position:chr24:10300216-10300072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:21-164
               
               
               Cow position:chr24:17832684-17832826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):137, 34

               
               
               Conread position:22-184
               
               
               Cow position:chr24:11840321-11840163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:25-149
               
               
               Cow position:chr24:34768435-34768557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:96
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:26-170
               
               
               Cow position:chr24:28063077-28062936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):119, 30

               
               
               Conread position:27-160
               
               
               Cow position:chr24:3626934-3627067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:27-183
               
               
               Cow position:chr24:19465785-19465940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:28-160
               
               
               Cow position:chr24:15340325-15340454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:28-184
               
               
               Cow position:chr24:15347720-15347565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):51, 17

               
               
               Conread position:31-185
               
               
               Cow position:chr24:21623354-21623200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):28, 124

               
               
               Conread position:33-173
               
               
               Cow position:chr24:35249985-35250125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:34-184
               
               
               Cow position:chr24:7046635-7046773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:34-184
               
               
               Cow position:chr24:34742879-34742728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:35-191
               
               
               Cow position:chr24:6102954-6102799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):29, 112

               
               
               Conread position:36-179
               
               
               Cow position:chr24:28024399-28024260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:39-184
               
               
               Cow position:chr24:34008452-34008597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:41-169
               
               
               Cow position:chr24:15557223-15557351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:43-182
               
               
               Cow position:chr24:18328359-18328494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:45-183
               
               
               Cow position:chr24:14648244-14648382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-149
               
               
               Cow position:chr24:10840808-10840909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:86
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-163
               
               
               Cow position:chr24:18390189-18390307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):42, 112

               
               
               Conread position:48-178
               
               
               Cow position:chr24:22235579-22235449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-180
               
               
               Cow position:chr24:28326968-28327099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):22, 109

               
               
               Conread position:48-182
               
               
               Cow position:chr24:15373517-15373383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr24:18313821-18313965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr24:40404700-40404832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:48-191
               
               
               Cow position:chr24:32071073-32070932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:49-174
               
               
               Cow position:chr24:29014077-29013952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:101
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:49-182
               
               
               Cow position:chr24:27290982-27290849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:49-184
               
               
               Cow position:chr24:19769606-19769465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:49-184
               
               
               Cow position:chr24:33465511-33465642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:51-170
               
               
               Cow position:chr24:256135-256016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:101
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:51-176
               
               
               Cow position:chr24:3631786-3631661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:95
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:55-183
               
               
               Cow position:chr24:33230779-33230647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:55-184
               
               
               Cow position:chr24:16895332-16895461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):16, 29

               
               
               Conread position:56-183
               
               
               Cow position:chr24:30202927-30202801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr24:18331824-18331694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr24:29679207-29679334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):10, 96

               
               
               Conread position:56-188
               
               
               Cow position:chr24:32818200-32818327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:56-191
               
               
               Cow position:chr24:41412193-41412325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:56-197
               
               
               Cow position:chr24:14786483-14786342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:57-147
               
               
               Cow position:chr24:43024363-43024273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:91
               
               
               Alignm identity:78
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:59-181
               
               
               Cow position:chr24:35469776-35469654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:59-184
               
               
               Cow position:chr24:17955344-17955468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):113, 90

               
               
               Conread position:64-184
               
               
               Cow position:chr24:20969569-20969686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:64-201
               
               
               Cow position:chr24:41068356-41068220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):29, 72

               
               
               Conread position:65-183
               
               
               Cow position:chr24:28289159-28289276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:66-185
               
               
               Cow position:chr24:34496218-34496096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:66-191
               
               
               Cow position:chr24:16268035-16268158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:69-183
               
               
               Cow position:chr24:15263967-15263852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:92
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:72-162
               
               
               Cow position:chr24:27800562-27800472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:91
               
               
               Alignm identity:78
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-176
               
               
               Cow position:chr25:19363883-19364053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:1-176
               
               
               Cow position:chr25:36872541-36872364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:1-184
               
               
               Cow position:chr25:23779156-23779333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):171, 8

               
               
               Conread position:2-160
               
               
               Cow position:chr25:8596292-8596447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:3-153
               
               
               Cow position:chr25:27825280-27825130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-156
               
               
               Cow position:chr25:7622998-7622845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-161
               
               
               Cow position:chr25:36155987-36155839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):100, 52

               
               
               Conread position:3-161
               
               
               Cow position:chr25:37965439-37965278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):86, 76

               
               
               Conread position:3-178
               
               
               Cow position:chr25:17566767-17566591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):99, 29

               
               
               Conread position:3-183
               
               
               Cow position:chr25:7806144-7805964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr25:17342637-17342457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr25:18294135-18294315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr25:20157117-20157298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr25:26134222-26134041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr25:31514360-31514180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:143
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr25:33663733-33663906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):80, 48

               
               
               Conread position:3-183
               
               
               Cow position:chr25:35052443-35052624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):170, 0

               
               
               Conread position:3-185
               
               
               Cow position:chr25:6996961-6996783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:3-191
               
               
               Cow position:chr25:536127-536315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-191
               
               
               Cow position:chr25:20664103-20664291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-193
               
               
               Cow position:chr25:32745511-32745331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:3-249
               
               
               Cow position:chr25:13304419-13304667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):169, 157

               
               
               Conread position:4-176
               
               
               Cow position:chr25:11081524-11081352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:4-179
               
               
               Cow position:chr25:15573567-15573391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):8, 54

               
               
               Conread position:5-167
               
               
               Cow position:chr25:26269540-26269702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:5-181
               
               
               Cow position:chr25:11316076-11315909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:5-183
               
               
               Cow position:chr25:36835258-36835430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:5-211
               
               
               Cow position:chr25:18551159-18551362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:8-121
               
               
               Cow position:chr25:22917323-22917433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:8-126
               
               
               Cow position:chr25:37648953-37648838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:8-137
               
               
               Cow position:chr25:22642444-22642310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):42, 128

               
               
               Conread position:8-141
               
               
               Cow position:chr25:33272809-33272674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:8-145
               
               
               Cow position:chr25:9640863-9641000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-146
               
               
               Cow position:chr25:15305851-15305714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):50, 18

               
               
               Conread position:8-149
               
               
               Cow position:chr25:20162315-20162457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):31, 53

               
               
               Conread position:8-150
               
               
               Cow position:chr25:447735-447871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-150
               
               
               Cow position:chr25:3141673-3141535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:8-155
               
               
               Cow position:chr25:19679523-19679382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:8-158
               
               
               Cow position:chr25:11855376-11855525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:8-161
               
               
               Cow position:chr25:22154202-22154045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:8-163
               
               
               Cow position:chr25:8410862-8411015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):151, 37

               
               
               Conread position:8-168
               
               
               Cow position:chr25:12223735-12223584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):150, 47

               
               
               Conread position:8-168
               
               
               Cow position:chr25:21547328-21547170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):150, 60

               
               
               Conread position:8-170
               
               
               Cow position:chr25:11857815-11857975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):110, 47

               
               
               Conread position:8-171
               
               
               Cow position:chr25:20085749-20085588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:8-172
               
               
               Cow position:chr25:22373315-22373480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:8-172
               
               
               Cow position:chr25:22734177-22734018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:8-173
               
               
               Cow position:chr25:15349738-15349896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-175
               
               
               Cow position:chr25:1982811-1982975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):47, 56

               
               
               Conread position:8-176
               
               
               Cow position:chr25:31705398-31705232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):161, 0

               
               
               Conread position:8-178
               
               
               Cow position:chr25:18646751-18646589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-178
               
               
               Cow position:chr25:22348287-22348459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr25:2624965-2624799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-180
               
               
               Cow position:chr25:11956975-11956806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr25:14164369-14164200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):148, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr25:23323668-23323491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr25:36369992-36369820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:142
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr25:36375683-36375511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:142
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr25:36535247-36535418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr25:6682879-6683062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr25:8347824-8347652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr25:9573964-9574130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr25:13223069-13222900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr25:13443236-13443411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr25:21500871-21501046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):73, 39

               
               
               Conread position:8-182
               
               
               Cow position:chr25:35339019-35339190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):125, 47

               
               
               Conread position:8-182
               
               
               Cow position:chr25:40904656-40904830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr25:5846634-5846810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr25:5921118-5920943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr25:5922543-5922704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr25:6718083-6718247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):80, 47

               
               
               Conread position:8-183
               
               
               Cow position:chr25:7726836-7726661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr25:18760540-18760709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr25:23053734-23053556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):66, 89

               
               
               Conread position:8-184
               
               
               Cow position:chr25:1838414-1838235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):155, 68

               
               
               Conread position:8-184
               
               
               Cow position:chr25:17403647-17403481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr25:17704910-17704742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr25:18988550-18988388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr25:23244833-23245004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr25:24863039-24862873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr25:26087689-26087517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):110, 47

               
               
               Conread position:8-184
               
               
               Cow position:chr25:30817063-30816887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr25:33311152-33311329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):164, 0

               
               
               Conread position:8-185
               
               
               Cow position:chr25:1823920-1824100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:8-185
               
               
               Cow position:chr25:9269511-9269345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-187
               
               
               Cow position:chr25:33100743-33100571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-189
               
               
               Cow position:chr25:18491208-18491031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr25:6259055-6258874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):80, 47

               
               
               Conread position:8-191
               
               
               Cow position:chr25:7673478-7673286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr25:13272740-13272560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr25:17658783-17658602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr25:26136649-26136832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):64, 46

               
               
               Conread position:8-191
               
               
               Cow position:chr25:35109107-35109278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr25:35612129-35612322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:8-193
               
               
               Cow position:chr25:33686511-33686696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-199
               
               
               Cow position:chr25:7306461-7306275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):160, 47

               
               
               Conread position:8-201
               
               
               Cow position:chr25:8157338-8157521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:8-213
               
               
               Cow position:chr25:31657109-31657308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-214
               
               
               Cow position:chr25:5808119-5807912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):204, 0

               
               
               Conread position:8-246
               
               
               Cow position:chr25:26989372-26989140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):55, 153

               
               
               Conread position:9-154
               
               
               Cow position:chr25:26679397-26679254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:9-167
               
               
               Cow position:chr25:28667877-28668031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:9-173
               
               
               Cow position:chr25:22565791-22565947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:9-184
               
               
               Cow position:chr25:6473906-6474089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:9-184
               
               
               Cow position:chr25:9616008-9615835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:9-184
               
               
               Cow position:chr25:33256535-33256352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):34, 170

               
               
               Conread position:9-191
               
               
               Cow position:chr25:20402537-20402718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:10-161
               
               
               Cow position:chr25:7298724-7298882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:10-173
               
               
               Cow position:chr25:5791544-5791708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:10-175
               
               
               Cow position:chr25:7403169-7403334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:10-183
               
               
               Cow position:chr25:16065051-16064891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:10-191
               
               
               Cow position:chr25:13503620-13503424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):57, 97

               
               
               Conread position:11-124
               
               
               Cow position:chr25:18480830-18480721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):85, 42

               
               
               Conread position:11-135
               
               
               Cow position:chr25:7185105-7185229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-158
               
               
               Cow position:chr25:14849482-14849629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):65, 50

               
               
               Conread position:11-173
               
               
               Cow position:chr25:1840489-1840333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:11-173
               
               
               Cow position:chr25:22315372-22315214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:11-173
               
               
               Cow position:chr25:24669284-24669435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):145, 44

               
               
               Conread position:11-177
               
               
               Cow position:chr25:1763252-1763092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):158, 44

               
               
               Conread position:11-177
               
               
               Cow position:chr25:7311225-7311388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):146, 0

               
               
               Conread position:11-178
               
               
               Cow position:chr25:21893502-21893342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:11-179
               
               
               Cow position:chr25:22203529-22203685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:11-181
               
               
               Cow position:chr25:36082035-36081876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr25:18720959-18721120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr25:26306035-26306204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr25:33457897-33457732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr25:14107005-14106831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):49, 142

               
               
               Conread position:11-183
               
               
               Cow position:chr25:17724052-17724225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr25:22756780-22756608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr25:9522813-9522642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):52, 67

               
               
               Conread position:11-184
               
               
               Cow position:chr25:10504167-10504339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):55, 33

               
               
               Conread position:11-184
               
               
               Cow position:chr25:16921625-16921799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr25:20008302-20008130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):152, 44

               
               
               Conread position:11-185
               
               
               Cow position:chr25:8863221-8863395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-185
               
               
               Cow position:chr25:26224868-26225032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-191
               
               
               Cow position:chr25:10138490-10138309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):48, 134

               
               
               Conread position:11-205
               
               
               Cow position:chr25:8226272-8226081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:11-211
               
               
               Cow position:chr25:2662562-2662371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):183, 43

               
               
               Conread position:12-121
               
               
               Cow position:chr25:19850035-19849925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:12-132
               
               
               Cow position:chr25:28939973-28940091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:101
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-140
               
               
               Cow position:chr25:18568047-18568175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-140
               
               
               Cow position:chr25:22571126-22571000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-148
               
               
               Cow position:chr25:15999383-15999518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):38, 60

               
               
               Conread position:12-150
               
               
               Cow position:chr25:9494876-9494737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:12-156
               
               
               Cow position:chr25:788424-788285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:12-161
               
               
               Cow position:chr25:22768388-22768239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-168
               
               
               Cow position:chr25:28597437-28597596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:12-171
               
               
               Cow position:chr25:7277158-7277314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:12-179
               
               
               Cow position:chr25:11060302-11060135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):34, 71

               
               
               Conread position:12-179
               
               
               Cow position:chr25:12098004-12097843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):58, 109

               
               
               Conread position:12-182
               
               
               Cow position:chr25:11585696-11585518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr25:15715039-15714873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr25:26072396-26072557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr25:10791652-10791815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr25:12305446-12305275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr25:17119911-17119743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):51, 43

               
               
               Conread position:12-183
               
               
               Cow position:chr25:18201759-18201927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr25:33555775-33555605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:12-185
               
               
               Cow position:chr25:432878-433051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:13-114
               
               
               Cow position:chr25:11319138-11319039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:85
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:13-182
               
               
               Cow position:chr25:13049134-13049302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):120, 107

               
               
               Conread position:13-191
               
               
               Cow position:chr25:18288604-18288777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:14-130
               
               
               Cow position:chr25:22119489-22119605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-148
               
               
               Cow position:chr25:14944960-14945094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-171
               
               
               Cow position:chr25:7684734-7684887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:14-182
               
               
               Cow position:chr25:36872890-36873056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:14-183
               
               
               Cow position:chr25:8102838-8102668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:14-183
               
               
               Cow position:chr25:17919142-17918973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):64, 15

               
               
               Conread position:14-183
               
               
               Cow position:chr25:28945183-28945019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:14-183
               
               
               Cow position:chr25:33101447-33101606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:14-184
               
               
               Cow position:chr25:12807208-12807040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):45, 124

               
               
               Conread position:14-184
               
               
               Cow position:chr25:20487270-20487442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):159, 0

               
               
               Conread position:14-191
               
               
               Cow position:chr25:17474345-17474521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):152, 0

               
               
               Conread position:14-191
               
               
               Cow position:chr25:22730990-22730820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):136, 42

               
               
               Conread position:15-161
               
               
               Cow position:chr25:33776220-33776076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:15-182
               
               
               Cow position:chr25:21245433-21245604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:15-184
               
               
               Cow position:chr25:7380673-7380841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:16-148
               
               
               Cow position:chr25:9635486-9635364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:18-159
               
               
               Cow position:chr25:10856554-10856691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:18-171
               
               
               Cow position:chr25:26061563-26061716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:18-184
               
               
               Cow position:chr25:11038524-11038352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:19-142
               
               
               Cow position:chr25:23769728-23769847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:104
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-159
               
               
               Cow position:chr25:35802499-35802640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:19-183
               
               
               Cow position:chr25:23519873-23520029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:19-185
               
               
               Cow position:chr25:18156123-18156288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):31, 76

               
               
               Conread position:20-164
               
               
               Cow position:chr25:18934477-18934616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:20-181
               
               
               Cow position:chr25:13542824-13542985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):44, 51

               
               
               Conread position:20-182
               
               
               Cow position:chr25:16867404-16867238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:20-208
               
               
               Cow position:chr25:7330765-7330577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):121, 34

               
               
               Conread position:21-169
               
               
               Cow position:chr25:36135977-36136125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):13, 138

               
               
               Conread position:25-185
               
               
               Cow position:chr25:25861190-25861355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):34, 78

               
               
               Conread position:26-158
               
               
               Cow position:chr25:11543441-11543567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:27-154
               
               
               Cow position:chr25:6782012-6781890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:27-182
               
               
               Cow position:chr25:3744585-3744745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:27-208
               
               
               Cow position:chr25:24115163-24115343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):155, 28

               
               
               Conread position:28-148
               
               
               Cow position:chr25:24202858-24202978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:97
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):31, 42

               
               
               Conread position:29-183
               
               
               Cow position:chr25:5515454-5515305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:30-175
               
               
               Cow position:chr25:26059642-26059498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):19, 8

               
               
               Conread position:34-155
               
               
               Cow position:chr25:12773428-12773307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:34-184
               
               
               Cow position:chr25:18906034-18905883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:35-183
               
               
               Cow position:chr25:9002818-9002671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):39, 81

               
               
               Conread position:41-167
               
               
               Cow position:chr25:13805155-13805028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:41-182
               
               
               Cow position:chr25:38421807-38421666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:41-183
               
               
               Cow position:chr25:15565862-15566004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):134, 129

               
               
               Conread position:41-184
               
               
               Cow position:chr25:36555553-36555691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:46-182
               
               
               Cow position:chr25:14215926-14215789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):25, 91

               
               
               Conread position:46-183
               
               
               Cow position:chr25:15294932-15294795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-142
               
               
               Cow position:chr25:17775131-17775037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:80
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-180
               
               
               Cow position:chr25:31762475-31762606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:48-183
               
               
               Cow position:chr25:12064181-12064047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:48-183
               
               
               Cow position:chr25:26052037-26051901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):23, 35

               
               
               Conread position:48-184
               
               
               Cow position:chr25:22750874-22751009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:48-191
               
               
               Cow position:chr25:15218266-15218127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:48-191
               
               
               Cow position:chr25:30619195-30619055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:49-181
               
               
               Cow position:chr25:34241970-34242103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:50-147
               
               
               Cow position:chr25:25828840-25828743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:82
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:50-191
               
               
               Cow position:chr25:7581296-7581440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:51-177
               
               
               Cow position:chr25:7216955-7216831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:56-167
               
               
               Cow position:chr25:3983410-3983301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:91
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:56-181
               
               
               Cow position:chr25:23016146-23016021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-183
               
               
               Cow position:chr25:5474104-5474231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-183
               
               
               Cow position:chr25:10217923-10218050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-183
               
               
               Cow position:chr25:22520465-22520336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr25:28187819-28187947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-191
               
               
               Cow position:chr25:21894760-21894893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:57-183
               
               
               Cow position:chr25:4009218-4009092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:58-184
               
               
               Cow position:chr25:26161093-26160963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:59-183
               
               
               Cow position:chr25:13325703-13325579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:63-183
               
               
               Cow position:chr25:20133196-20133315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:64-173
               
               
               Cow position:chr25:12205151-12205042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:89
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-184
               
               
               Cow position:chr25:36120616-36120496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-184
               
               
               Cow position:chr25:36762223-36762103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-232
               
               
               Cow position:chr25:7470480-7470312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:65-191
               
               
               Cow position:chr25:14513232-14513105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:66-184
               
               
               Cow position:chr25:30656533-30656648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:67-173
               
               
               Cow position:chr25:27520643-27520749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:67-184
               
               
               Cow position:chr25:12840603-12840720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:92
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:67-184
               
               
               Cow position:chr25:21267102-21266989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):102, 46

               
               
               Conread position:68-177
               
               
               Cow position:chr25:7546623-7546514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:88
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:69-183
               
               
               Cow position:chr25:18564599-18564486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:70-197
               
               
               Cow position:chr25:34768622-34768745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:71-184
               
               
               Cow position:chr25:36840507-36840394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):102, 55

               
               
               Conread position:71-191
               
               
               Cow position:chr25:4221492-4221612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-154
               
               
               Cow position:chr26:23602157-23602307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:112
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):18, 54

               
               
               Conread position:2-155
               
               
               Cow position:chr26:23106226-23106382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:3-131
               
               
               Cow position:chr26:35530443-35530316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:3-153
               
               
               Cow position:chr26:31711870-31712020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-154
               
               
               Cow position:chr26:34026839-34026990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-155
               
               
               Cow position:chr26:31173467-31173315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-155
               
               
               Cow position:chr26:32688748-32688590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:3-177
               
               
               Cow position:chr26:14293344-14293174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):13, 53

               
               
               Conread position:3-178
               
               
               Cow position:chr26:1894187-1894349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):36, 58

               
               
               Conread position:3-181
               
               
               Cow position:chr26:12028040-12028217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr26:8811325-8811145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr26:9662034-9662210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr26:10974323-10974149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr26:23141908-23142086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr26:25225535-25225715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:4-183
               
               
               Cow position:chr26:27847217-27847038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:4-201
               
               
               Cow position:chr26:178433-178233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):73, 194

               
               
               Conread position:5-168
               
               
               Cow position:chr26:7687050-7687212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):75, 50

               
               
               Conread position:5-177
               
               
               Cow position:chr26:20260774-20260608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:5-183
               
               
               Cow position:chr26:23112230-23112056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):150, 0

               
               
               Conread position:6-183
               
               
               Cow position:chr26:33175521-33175697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:7-167
               
               
               Cow position:chr26:5836627-5836786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-131
               
               
               Cow position:chr26:33114748-33114868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:8-135
               
               
               Cow position:chr26:10220033-10220162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):46, 21

               
               
               Conread position:8-139
               
               
               Cow position:chr26:31876015-31876148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:8-143
               
               
               Cow position:chr26:26926990-26927124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):64, 11

               
               
               Conread position:8-144
               
               
               Cow position:chr26:30220727-30220590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):8, 109

               
               
               Conread position:8-145
               
               
               Cow position:chr26:28644-28775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:8-146
               
               
               Cow position:chr26:26407601-26407735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):90, 47

               
               
               Conread position:8-149
               
               
               Cow position:chr26:21320135-21319998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:105
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-149
               
               
               Cow position:chr26:22798964-22799104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-155
               
               
               Cow position:chr26:28251343-28251202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:8-160
               
               
               Cow position:chr26:11967944-11968095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:8-160
               
               
               Cow position:chr26:16801175-16801020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):65, 118

               
               
               Conread position:8-161
               
               
               Cow position:chr26:21279772-21279921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-161
               
               
               Cow position:chr26:26244979-26245130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:8-168
               
               
               Cow position:chr26:29900871-29901026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:8-173
               
               
               Cow position:chr26:8811664-8811500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:8-176
               
               
               Cow position:chr26:22892258-22892420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-177
               
               
               Cow position:chr26:11538725-11538556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr26:2994510-2994677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr26:15132830-15132659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):92, 82

               
               
               Conread position:8-180
               
               
               Cow position:chr26:647533-647704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):164, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr26:2930064-2930235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):24, 143

               
               
               Conread position:8-181
               
               
               Cow position:chr26:32830273-32830101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr26:4585022-4585191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr26:7148111-7148286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):51, 81

               
               
               Conread position:8-182
               
               
               Cow position:chr26:9535703-9535537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr26:12144927-12145099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr26:17057864-17057697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):132, 43

               
               
               Conread position:8-182
               
               
               Cow position:chr26:25526436-25526268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr26:4167160-4167335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):47, 61

               
               
               Conread position:8-183
               
               
               Cow position:chr26:10764404-10764230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr26:11672490-11672315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr26:28244021-28243847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr26:4854733-4854562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr26:10608766-10608599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr26:23671608-23671433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):54, 60

               
               
               Conread position:8-184
               
               
               Cow position:chr26:32601545-32601367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr26:33392591-33392411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):46, 29

               
               
               Conread position:8-184
               
               
               Cow position:chr26:35397322-35397136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):47, 127

               
               
               Conread position:8-184
               
               
               Cow position:chr26:35449248-35449080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr26:35686587-35686408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:8-185
               
               
               Cow position:chr26:6823349-6823175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr26:12893240-12893417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr26:25504652-25504471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):101, 48

               
               
               Conread position:8-191
               
               
               Cow position:chr26:29889325-29889501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr26:32518668-32518480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:8-201
               
               
               Cow position:chr26:23481062-23481250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):165, 56

               
               
               Conread position:8-201
               
               
               Cow position:chr26:34060525-34060334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:8-212
               
               
               Cow position:chr26:31382504-31382311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):155, 44

               
               
               Conread position:9-175
               
               
               Cow position:chr26:32834385-32834553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:9-183
               
               
               Cow position:chr26:18381497-18381332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:9-191
               
               
               Cow position:chr26:19459880-19459703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:9-191
               
               
               Cow position:chr26:32563538-32563359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):15, 47

               
               
               Conread position:10-155
               
               
               Cow position:chr26:16166504-16166649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:10-176
               
               
               Cow position:chr26:33038038-33038198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:10-182
               
               
               Cow position:chr26:33475887-33475710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:10-184
               
               
               Cow position:chr26:23623856-23624027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:10-195
               
               
               Cow position:chr26:14905629-14905802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:11-131
               
               
               Cow position:chr26:26666652-26666769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:11-138
               
               
               Cow position:chr26:32842597-32842724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):58, 94

               
               
               Conread position:11-139
               
               
               Cow position:chr26:20846931-20846807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:11-149
               
               
               Cow position:chr26:24240870-24240731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):58, 9

               
               
               Conread position:11-155
               
               
               Cow position:chr26:3930344-3930488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-159
               
               
               Cow position:chr26:27482376-27482524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-164
               
               
               Cow position:chr26:8637939-8637786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):47, 120

               
               
               Conread position:11-171
               
               
               Cow position:chr26:28202780-28202940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-179
               
               
               Cow position:chr26:16585614-16585457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr26:20291506-20291673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr26:20770037-20769870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr26:22901067-22901242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):40, 153

               
               
               Conread position:11-183
               
               
               Cow position:chr26:19146090-19145920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):67, 140

               
               
               Conread position:11-183
               
               
               Cow position:chr26:33074310-33074479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr26:34114451-34114280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):52, 66

               
               
               Conread position:11-184
               
               
               Cow position:chr26:4807744-4807575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr26:5168579-5168415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr26:9099347-9099515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr26:10965399-10965577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr26:19671664-19671495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr26:22348824-22348995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):120, 40

               
               
               Conread position:11-184
               
               
               Cow position:chr26:31633918-31633745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr26:32503160-32503318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-186
               
               
               Cow position:chr26:25663362-25663531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:11-191
               
               
               Cow position:chr26:16435463-16435646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:11-191
               
               
               Cow position:chr26:16796026-16796196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:11-191
               
               
               Cow position:chr26:28423472-28423297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:12-127
               
               
               Cow position:chr26:23097007-23097120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-131
               
               
               Cow position:chr26:33728454-33728574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:12-135
               
               
               Cow position:chr26:25029722-25029599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-149
               
               
               Cow position:chr26:29897372-29897239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:12-156
               
               
               Cow position:chr26:1041188-1041044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-168
               
               
               Cow position:chr26:34559986-34560136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:12-181
               
               
               Cow position:chr26:3192259-3192423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):163, 42

               
               
               Conread position:12-181
               
               
               Cow position:chr26:32670313-32670475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr26:586687-586861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):60, 124

               
               
               Conread position:12-183
               
               
               Cow position:chr26:7642388-7642555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr26:34314867-34314709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr26:5407168-5406996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:143
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr26:27768456-27768282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):162, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr26:32353536-32353703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr26:32655419-32655592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):146, 136

               
               
               Conread position:12-191
               
               
               Cow position:chr26:14950960-14951133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-191
               
               
               Cow position:chr26:34580999-34580813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):43, 148

               
               
               Conread position:12-191
               
               
               Cow position:chr26:35358835-35359014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:13-148
               
               
               Cow position:chr26:31062611-31062467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):36, 79

               
               
               Conread position:13-149
               
               
               Cow position:chr26:17554436-17554564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):102, 39

               
               
               Conread position:13-152
               
               
               Cow position:chr26:34955598-34955733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:13-182
               
               
               Cow position:chr26:33201886-33202051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:13-184
               
               
               Cow position:chr26:29663969-29664142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:13-209
               
               
               Cow position:chr26:32981286-32981480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):58, 49

               
               
               Conread position:14-134
               
               
               Cow position:chr26:11800390-11800278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:14-154
               
               
               Cow position:chr26:10502913-10502776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):89, 48

               
               
               Conread position:14-166
               
               
               Cow position:chr26:754727-754876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:14-169
               
               
               Cow position:chr26:8478690-8478840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):5, 42

               
               
               Conread position:14-176
               
               
               Cow position:chr26:12807120-12807274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:14-181
               
               
               Cow position:chr26:7154060-7153890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):56, 20

               
               
               Conread position:14-182
               
               
               Cow position:chr26:12940592-12940419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:14-184
               
               
               Cow position:chr26:9501895-9501726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):154, 142

               
               
               Conread position:14-184
               
               
               Cow position:chr26:21822864-21823027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):156, 41

               
               
               Conread position:14-184
               
               
               Cow position:chr26:33253133-33253299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:144
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:14-206
               
               
               Cow position:chr26:6794335-6794141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):88, 41

               
               
               Conread position:18-179
               
               
               Cow position:chr26:6714119-6714280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:18-183
               
               
               Cow position:chr26:31903349-31903185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:18-184
               
               
               Cow position:chr26:3706982-3706809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):34, 102

               
               
               Conread position:19-149
               
               
               Cow position:chr26:28244992-28245120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-177
               
               
               Cow position:chr26:13828242-13828093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):156, 43

               
               
               Conread position:19-181
               
               
               Cow position:chr26:17398758-17398596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:19-183
               
               
               Cow position:chr26:16550170-16550002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:19-184
               
               
               Cow position:chr26:24453722-24453890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):51, 10

               
               
               Conread position:19-185
               
               
               Cow position:chr26:4363482-4363316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):63, 84

               
               
               Conread position:19-208
               
               
               Cow position:chr26:11884472-11884293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):176, 26

               
               
               Conread position:20-160
               
               
               Cow position:chr26:23109208-23109069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):135, 35

               
               
               Conread position:20-176
               
               
               Cow position:chr26:7525031-7525178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:20-184
               
               
               Cow position:chr26:28202578-28202742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:29-154
               
               
               Cow position:chr26:8187047-8186924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):119, 42

               
               
               Conread position:29-184
               
               
               Cow position:chr26:9839372-9839526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):28, 91

               
               
               Conread position:35-182
               
               
               Cow position:chr26:15200348-15200494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):9, 112

               
               
               Conread position:36-201
               
               
               Cow position:chr26:829970-829806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):157, 0

               
               
               Conread position:47-184
               
               
               Cow position:chr26:7314954-7315090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):67, 111

               
               
               Conread position:48-171
               
               
               Cow position:chr26:26294043-26294166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-177
               
               
               Cow position:chr26:32825848-32825976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:48-181
               
               
               Cow position:chr26:11263792-11263661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):30, 92

               
               
               Conread position:48-191
               
               
               Cow position:chr26:6865174-6865034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:48-191
               
               
               Cow position:chr26:16594349-16594489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:50-203
               
               
               Cow position:chr26:32836389-32836238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:51-171
               
               
               Cow position:chr26:32565600-32565479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:96
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:51-182
               
               
               Cow position:chr26:677830-677961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:52-185
               
               
               Cow position:chr26:25074863-25074733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:55-178
               
               
               Cow position:chr26:21930484-21930361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:96
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:55-182
               
               
               Cow position:chr26:22354560-22354432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:55-183
               
               
               Cow position:chr26:19774152-19774281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:56-161
               
               
               Cow position:chr26:33691343-33691448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:87
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-176
               
               
               Cow position:chr26:32571438-32571318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-181
               
               
               Cow position:chr26:15599382-15599506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:56-183
               
               
               Cow position:chr26:7157460-7157588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:97
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:56-183
               
               
               Cow position:chr26:13100211-13100338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr26:8353114-8352986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-191
               
               
               Cow position:chr26:16922083-16921948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):22, 77

               
               
               Conread position:56-191
               
               
               Cow position:chr26:30254489-30254623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:57-191
               
               
               Cow position:chr26:9104138-9104271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:58-180
               
               
               Cow position:chr26:27760768-27760888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:59-183
               
               
               Cow position:chr26:22304237-22304361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-191
               
               
               Cow position:chr26:28374306-28374433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:67-180
               
               
               Cow position:chr26:28446717-28446604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:94
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:67-184
               
               
               Cow position:chr26:7183863-7183980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:96
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:67-191
               
               
               Cow position:chr26:33011536-33011658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:74-191
               
               
               Cow position:chr26:18876835-18876952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:95
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-177
               
               
               Cow position:chr27:24709331-24709506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:1-182
               
               
               Cow position:chr27:28478361-28478534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:1-191
               
               
               Cow position:chr27:26112141-26111951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:151
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):172, 7

               
               
               Conread position:2-181
               
               
               Cow position:chr27:26236105-26236279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:2-184
               
               
               Cow position:chr27:20514597-20514775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):154, 0

               
               
               Conread position:3-149
               
               
               Cow position:chr27:23108124-23107979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:107
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:3-151
               
               
               Cow position:chr27:20612299-20612447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):100, 69

               
               
               Conread position:3-152
               
               
               Cow position:chr27:10994468-10994618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:109
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:3-156
               
               
               Cow position:chr27:23177534-23177384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:3-160
               
               
               Cow position:chr27:27003481-27003327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:3-161
               
               
               Cow position:chr27:17908483-17908326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:3-177
               
               
               Cow position:chr27:19932844-19933018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-178
               
               
               Cow position:chr27:12564650-12564475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-181
               
               
               Cow position:chr27:22586740-22586918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-181
               
               
               Cow position:chr27:24731260-24731086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):173, 110

               
               
               Conread position:3-182
               
               
               Cow position:chr27:6499836-6500015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-182
               
               
               Cow position:chr27:12187346-12187167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-182
               
               
               Cow position:chr27:20591705-20591883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr27:1353358-1353538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr27:10979638-10979818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr27:18739152-18739332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr27:20719063-20719243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr27:22489050-22489232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr27:29603596-29603773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr27:29613713-29613533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-184
               
               
               Cow position:chr27:30605477-30605655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:3-186
               
               
               Cow position:chr27:15237589-15237771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:3-191
               
               
               Cow position:chr27:13639209-13639020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:3-195
               
               
               Cow position:chr27:232329-232522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:151
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):179, 0

               
               
               Conread position:3-206
               
               
               Cow position:chr27:15870937-15871139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:3-208
               
               
               Cow position:chr27:11323105-11323310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-208
               
               
               Cow position:chr27:22730913-22730702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):25, 188

               
               
               Conread position:4-183
               
               
               Cow position:chr27:19485650-19485829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:5-179
               
               
               Cow position:chr27:21978363-21978184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):53, 88

               
               
               Conread position:5-184
               
               
               Cow position:chr27:20543494-20543676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):15, 151

               
               
               Conread position:5-184
               
               
               Cow position:chr27:20749222-20749058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:7-149
               
               
               Cow position:chr27:23477730-23477867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:7-156
               
               
               Cow position:chr27:27450101-27449957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:7-163
               
               
               Cow position:chr27:26980183-26980027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:7-179
               
               
               Cow position:chr27:22792621-22792783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:7-184
               
               
               Cow position:chr27:6541417-6541588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:7-184
               
               
               Cow position:chr27:26490123-26489952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:7-191
               
               
               Cow position:chr27:30764815-30764994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:8-116
               
               
               Cow position:chr27:700311-700203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:87
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-127
               
               
               Cow position:chr27:20826014-20825891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:8-128
               
               
               Cow position:chr27:26467778-26467658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-128
               
               
               Cow position:chr27:30441485-30441605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):76, 19

               
               
               Conread position:8-130
               
               
               Cow position:chr27:19991932-19992051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:8-135
               
               
               Cow position:chr27:21101509-21101383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:8-141
               
               
               Cow position:chr27:26624990-26625122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:8-145
               
               
               Cow position:chr27:25000184-25000043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr27:12459071-12459209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr27:22583526-22583667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:8-149
               
               
               Cow position:chr27:178646-178784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:8-155
               
               
               Cow position:chr27:7412177-7412320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-155
               
               
               Cow position:chr27:29183443-29183289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:8-156
               
               
               Cow position:chr27:31153775-31153629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):107, 55

               
               
               Conread position:8-157
               
               
               Cow position:chr27:23859946-23860093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:8-157
               
               
               Cow position:chr27:30444891-30444751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:8-157
               
               
               Cow position:chr27:31183354-31183505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:8-161
               
               
               Cow position:chr27:23060333-23060180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-163
               
               
               Cow position:chr27:12596565-12596712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-164
               
               
               Cow position:chr27:11208774-11208618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-164
               
               
               Cow position:chr27:23232695-23232853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:8-170
               
               
               Cow position:chr27:29249369-29249534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):64, 21

               
               
               Conread position:8-171
               
               
               Cow position:chr27:26314342-26314180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:8-171
               
               
               Cow position:chr27:31157593-31157755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:8-172
               
               
               Cow position:chr27:22220333-22220498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):65, 47

               
               
               Conread position:8-173
               
               
               Cow position:chr27:11561557-11561721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:8-176
               
               
               Cow position:chr27:426753-426917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:8-177
               
               
               Cow position:chr27:6924865-6925034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-177
               
               
               Cow position:chr27:31248823-31248664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-178
               
               
               Cow position:chr27:1190693-1190523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr27:20484516-20484681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr27:22268003-22268176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):40, 154

               
               
               Conread position:8-179
               
               
               Cow position:chr27:28922112-28921941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):139, 132

               
               
               Conread position:8-179
               
               
               Cow position:chr27:29308126-29308294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):50, 77

               
               
               Conread position:8-179
               
               
               Cow position:chr27:31498563-31498730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):68, 85

               
               
               Conread position:8-180
               
               
               Cow position:chr27:16705036-16705203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr27:3518285-3518458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr27:7649808-7649628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):53, 23

               
               
               Conread position:8-181
               
               
               Cow position:chr27:10598770-10598942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr27:13801588-13801762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):46, 22

               
               
               Conread position:8-181
               
               
               Cow position:chr27:15865393-15865560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr27:26118280-26118453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr27:26400934-26400768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr27:29892505-29892680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):168, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr27:2592320-2592497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:146
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr27:6319706-6319873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr27:18688629-18688455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr27:19576539-19576369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr27:19717681-19717869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr27:23128248-23128414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):64, 108

               
               
               Conread position:8-182
               
               
               Cow position:chr27:23452246-23452415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr27:23890716-23890892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr27:29693250-29693432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr27:4414033-4413863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):150, 44

               
               
               Conread position:8-183
               
               
               Cow position:chr27:5539909-5539740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr27:10307520-10307345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):50, 131

               
               
               Conread position:8-183
               
               
               Cow position:chr27:10323627-10323792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr27:10404334-10404161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):150, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr27:11994084-11993911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr27:14818013-14818188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr27:15332505-15332340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):122, 54

               
               
               Conread position:8-183
               
               
               Cow position:chr27:16786614-16786784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr27:18791731-18791554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr27:19500453-19500278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr27:19557175-19557340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr27:20637275-20637106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):70, 48

               
               
               Conread position:8-183
               
               
               Cow position:chr27:23554546-23554374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr27:26245763-26245592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr27:30455776-30455949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr27:31151166-31151336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr27:6241410-6241236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr27:8790959-8790785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):159, 29

               
               
               Conread position:8-184
               
               
               Cow position:chr27:13251807-13251968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):103, 44

               
               
               Conread position:8-184
               
               
               Cow position:chr27:15315306-15315473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr27:18558141-18558313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):148, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr27:19660711-19660888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr27:24303723-24303903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr27:26481414-26481239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):22, 119

               
               
               Conread position:8-184
               
               
               Cow position:chr27:27438725-27438548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):147, 132

               
               
               Conread position:8-184
               
               
               Cow position:chr27:28002020-28001856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr27:29319189-29319367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):34, 78

               
               
               Conread position:8-184
               
               
               Cow position:chr27:29388455-29388628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):90, 39

               
               
               Conread position:8-184
               
               
               Cow position:chr27:31386847-31386674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):167, 56

               
               
               Conread position:8-185
               
               
               Cow position:chr27:2957200-2957362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:8-185
               
               
               Cow position:chr27:22254573-22254752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):49, 147

               
               
               Conread position:8-185
               
               
               Cow position:chr27:23147944-23148123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:8-190
               
               
               Cow position:chr27:7346453-7346634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):25, 148

               
               
               Conread position:8-191
               
               
               Cow position:chr27:590986-590799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr27:7959048-7958867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr27:15925125-15925309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:8-192
               
               
               Cow position:chr27:16088574-16088771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):47, 100

               
               
               Conread position:8-206
               
               
               Cow position:chr27:26323225-26323426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):62, 174

               
               
               Conread position:8-207
               
               
               Cow position:chr27:26909805-26909610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):164, 47

               
               
               Conread position:8-209
               
               
               Cow position:chr27:9504336-9504529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:8-211
               
               
               Cow position:chr27:17102683-17102878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:9-148
               
               
               Cow position:chr27:22602959-22603106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:9-149
               
               
               Cow position:chr27:16336675-16336809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:9-161
               
               
               Cow position:chr27:21951196-21951045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:9-179
               
               
               Cow position:chr27:11133872-11134037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:9-181
               
               
               Cow position:chr27:13411584-13411415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):25, 45

               
               
               Conread position:9-182
               
               
               Cow position:chr27:16103595-16103761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:9-183
               
               
               Cow position:chr27:17472602-17472763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:9-183
               
               
               Cow position:chr27:22549986-22549811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):112, 36

               
               
               Conread position:9-184
               
               
               Cow position:chr27:16512383-16512215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:9-191
               
               
               Cow position:chr27:20653474-20653292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:10-128
               
               
               Cow position:chr27:30458848-30458730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:92
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:10-141
               
               
               Cow position:chr27:23760193-23760068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:10-167
               
               
               Cow position:chr27:18912736-18912584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:10-173
               
               
               Cow position:chr27:30694425-30694262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:10-184
               
               
               Cow position:chr27:212736-212913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):49, 166

               
               
               Conread position:10-184
               
               
               Cow position:chr27:6162618-6162454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:10-184
               
               
               Cow position:chr27:26188612-26188785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):146, 0

               
               
               Conread position:10-185
               
               
               Cow position:chr27:22560041-22559870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):56, 28

               
               
               Conread position:11-121
               
               
               Cow position:chr27:19653788-19653678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:89
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-131
               
               
               Cow position:chr27:27012482-27012602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-142
               
               
               Cow position:chr27:672450-672581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:101
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):72, 108

               
               
               Conread position:11-156
               
               
               Cow position:chr27:11145668-11145807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-158
               
               
               Cow position:chr27:23930851-23930707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:11-160
               
               
               Cow position:chr27:10581320-10581466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):137, 43

               
               
               Conread position:11-160
               
               
               Cow position:chr27:15453999-15454145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):138, 5

               
               
               Conread position:11-171
               
               
               Cow position:chr27:16965361-16965522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):120, 36

               
               
               Conread position:11-175
               
               
               Cow position:chr27:15867179-15867337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):152, 44

               
               
               Conread position:11-177
               
               
               Cow position:chr27:21677644-21677474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:11-179
               
               
               Cow position:chr27:27828070-27827900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):52, 162

               
               
               Conread position:11-180
               
               
               Cow position:chr27:26883474-26883306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:11-181
               
               
               Cow position:chr27:1184389-1184224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-181
               
               
               Cow position:chr27:11480852-11480683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr27:4944720-4944560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr27:8062565-8062396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr27:13318191-13318020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr27:15668988-15668817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):56, 67

               
               
               Conread position:11-182
               
               
               Cow position:chr27:17397665-17397500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr27:2644312-2644135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr27:24755777-24755943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr27:26121544-26121715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr27:26437334-26437166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr27:26509370-26509202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr27:27648529-27648362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr27:28932016-28931847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr27:1637140-1636979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr27:7935372-7935200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):130, 60

               
               
               Conread position:11-184
               
               
               Cow position:chr27:13903143-13902960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):47, 165

               
               
               Conread position:11-184
               
               
               Cow position:chr27:19452785-19452958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):59, 50

               
               
               Conread position:11-184
               
               
               Cow position:chr27:23594105-23594277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr27:30868965-30868784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr27:30914793-30914965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):145, 0

               
               
               Conread position:11-185
               
               
               Cow position:chr27:16246593-16246764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):144, 42

               
               
               Conread position:11-191
               
               
               Cow position:chr27:20548596-20548774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:11-191
               
               
               Cow position:chr27:25151875-25152048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):48, 102

               
               
               Conread position:11-191
               
               
               Cow position:chr27:28518079-28518261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):162, 0

               
               
               Conread position:11-191
               
               
               Cow position:chr27:28896664-28896845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):100, 145

               
               
               Conread position:11-197
               
               
               Cow position:chr27:26852796-26852611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:12-131
               
               
               Cow position:chr27:21054244-21054363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:92
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-139
               
               
               Cow position:chr27:26154105-26154232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-142
               
               
               Cow position:chr27:26317850-26317980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-145
               
               
               Cow position:chr27:19779663-19779794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:12-148
               
               
               Cow position:chr27:2036510-2036640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-151
               
               
               Cow position:chr27:21419399-21419267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:12-154
               
               
               Cow position:chr27:29246360-29246221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:12-161
               
               
               Cow position:chr27:26983950-26984095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):126, 43

               
               
               Conread position:12-179
               
               
               Cow position:chr27:23560242-23560080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-179
               
               
               Cow position:chr27:27058618-27058452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:12-180
               
               
               Cow position:chr27:28015948-28015783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):58, 68

               
               
               Conread position:12-181
               
               
               Cow position:chr27:26173285-26173448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:12-181
               
               
               Cow position:chr27:26793997-26793830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr27:7343642-7343474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):102, 57

               
               
               Conread position:12-182
               
               
               Cow position:chr27:19508799-19508967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr27:24223739-24223906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):139, 42

               
               
               Conread position:12-182
               
               
               Cow position:chr27:31170285-31170110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):52, 132

               
               
               Conread position:12-183
               
               
               Cow position:chr27:5553256-5553424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr27:11435540-11435367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):70, 99

               
               
               Conread position:12-183
               
               
               Cow position:chr27:29991672-29991492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr27:30582524-30582689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr27:30872270-30872104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr27:18435343-18435177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr27:25809729-25809563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:12-184
               
               
               Cow position:chr27:29593844-29593673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:12-185
               
               
               Cow position:chr27:24331501-24331677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):29, 164

               
               
               Conread position:12-189
               
               
               Cow position:chr27:25790087-25790253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:13-172
               
               
               Cow position:chr27:20048425-20048578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:13-173
               
               
               Cow position:chr27:30997041-30996885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:13-177
               
               
               Cow position:chr27:29160196-29160035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):145, 0

               
               
               Conread position:13-181
               
               
               Cow position:chr27:28254024-28254191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:13-183
               
               
               Cow position:chr27:11982860-11982691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:13-201
               
               
               Cow position:chr27:29831920-29831725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):38, 181

               
               
               Conread position:14-131
               
               
               Cow position:chr27:18215372-18215261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:14-155
               
               
               Cow position:chr27:30884814-30884955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-158
               
               
               Cow position:chr27:27606507-27606366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:14-167
               
               
               Cow position:chr27:20266439-20266286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-179
               
               
               Cow position:chr27:20045680-20045843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):82, 123

               
               
               Conread position:14-181
               
               
               Cow position:chr27:17995157-17994990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-181
               
               
               Cow position:chr27:18507436-18507603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-182
               
               
               Cow position:chr27:19387808-19387972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:14-183
               
               
               Cow position:chr27:10582157-10582328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:14-183
               
               
               Cow position:chr27:16231151-16230979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:14-191
               
               
               Cow position:chr27:1768833-1768661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:14-198
               
               
               Cow position:chr27:19483315-19483132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):169, 0

               
               
               Conread position:14-214
               
               
               Cow position:chr27:11349072-11349262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:18-148
               
               
               Cow position:chr27:18873844-18873968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:18-176
               
               
               Cow position:chr27:24356827-24356986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:18-181
               
               
               Cow position:chr27:4390466-4390300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):148, 59

               
               
               Conread position:18-183
               
               
               Cow position:chr27:7304813-7304649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:18-183
               
               
               Cow position:chr27:9977478-9977638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):20, 38

               
               
               Conread position:18-183
               
               
               Cow position:chr27:18882449-18882607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:19-149
               
               
               Cow position:chr27:15434118-15434246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-161
               
               
               Cow position:chr27:7847511-7847653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):116, 45

               
               
               Conread position:19-167
               
               
               Cow position:chr27:18491352-18491495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:19-182
               
               
               Cow position:chr27:15825929-15825766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):56, 75

               
               
               Conread position:19-182
               
               
               Cow position:chr27:27747674-27747511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:19-184
               
               
               Cow position:chr27:14841393-14841228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:20-154
               
               
               Cow position:chr27:26087112-26087242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:20-179
               
               
               Cow position:chr27:6550250-6550414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):35, 142

               
               
               Conread position:20-183
               
               
               Cow position:chr27:13940759-13940602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:20-183
               
               
               Cow position:chr27:29236350-29236517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):45, 155

               
               
               Conread position:20-191
               
               
               Cow position:chr27:23632395-23632559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:21-177
               
               
               Cow position:chr27:28541318-28541163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:22-177
               
               
               Cow position:chr27:27551159-27551006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):38, 16

               
               
               Conread position:22-178
               
               
               Cow position:chr27:13803376-13803529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:26-171
               
               
               Cow position:chr27:27020299-27020154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:26-179
               
               
               Cow position:chr27:15866020-15866168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:26-184
               
               
               Cow position:chr27:14303541-14303693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):128, 30

               
               
               Conread position:26-184
               
               
               Cow position:chr27:23863386-23863545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):32, 133

               
               
               Conread position:27-191
               
               
               Cow position:chr27:30261093-30260926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:29-202
               
               
               Cow position:chr27:12284802-12284966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:30-191
               
               
               Cow position:chr27:30908474-30908635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):40, 96

               
               
               Conread position:34-184
               
               
               Cow position:chr27:28260725-28260580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:35-165
               
               
               Cow position:chr27:23495899-23495772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:35-186
               
               
               Cow position:chr27:7973984-7974135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):13, 31

               
               
               Conread position:36-185
               
               
               Cow position:chr27:20552973-20552821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:37-215
               
               
               Cow position:chr27:26920103-26919926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):48, 157

               
               
               Conread position:38-178
               
               
               Cow position:chr27:16205599-16205737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:41-153
               
               
               Cow position:chr27:23489044-23488935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:92
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:41-184
               
               
               Cow position:chr27:22423330-22423472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:45-183
               
               
               Cow position:chr27:8168613-8168475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:102
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:46-184
               
               
               Cow position:chr27:17918493-17918357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:46-184
               
               
               Cow position:chr27:29380673-29380809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:46-185
               
               
               Cow position:chr27:17918897-17918760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:47-185
               
               
               Cow position:chr27:14957906-14957772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:48-176
               
               
               Cow position:chr27:29658894-29658767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):29, 72

               
               
               Conread position:48-182
               
               
               Cow position:chr27:6674101-6674233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:48-182
               
               
               Cow position:chr27:27039016-27038887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:48-182
               
               
               Cow position:chr27:30489590-30489456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr27:4386241-4386105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr27:22454956-22454819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr27:22723874-22723737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr27:27270723-27270584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):20, 30

               
               
               Conread position:48-185
               
               
               Cow position:chr27:30988618-30988754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:50-191
               
               
               Cow position:chr27:20584631-20584493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:51-179
               
               
               Cow position:chr27:15215050-15215181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:51-191
               
               
               Cow position:chr27:18923009-18922870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:55-183
               
               
               Cow position:chr27:27064612-27064484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:55-198
               
               
               Cow position:chr27:27673188-27673047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:56-177
               
               
               Cow position:chr27:1789310-1789189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:97
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-178
               
               
               Cow position:chr27:30665248-30665126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:95
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-182
               
               
               Cow position:chr27:23545502-23545375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:56-182
               
               
               Cow position:chr27:30359235-30359361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:96
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-183
               
               
               Cow position:chr27:19755926-19756051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr27:1291020-1290895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:56-187
               
               
               Cow position:chr27:25276972-25277099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:57-181
               
               
               Cow position:chr27:27641181-27641059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:57-184
               
               
               Cow position:chr27:20812736-20812861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:58-183
               
               
               Cow position:chr27:26413424-26413299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:59-179
               
               
               Cow position:chr27:14675184-14675064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-184
               
               
               Cow position:chr27:10443262-10443141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:65-179
               
               
               Cow position:chr27:16237464-16237578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:65-184
               
               
               Cow position:chr27:12191642-12191522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:65-184
               
               
               Cow position:chr27:27255825-27255944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:101
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:67-196
               
               
               Cow position:chr27:8263499-8263369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:99
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:68-183
               
               
               Cow position:chr27:23216476-23216364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:71-183
               
               
               Cow position:chr27:10653528-10653640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:71-188
               
               
               Cow position:chr27:22153702-22153819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:95
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:84-183
               
               
               Cow position:chr27:715357-715456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:83
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-135
               
               
               Cow position:chr28:4588499-4588372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:2-189
               
               
               Cow position:chr28:6059277-6059470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:3-135
               
               
               Cow position:chr28:16159687-16159817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:101
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:3-139
               
               
               Cow position:chr28:26304249-26304113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):71, 16

               
               
               Conread position:3-145
               
               
               Cow position:chr28:11309907-11310056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:3-149
               
               
               Cow position:chr28:17737967-17738113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-159
               
               
               Cow position:chr28:19118155-19117999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):78, 73

               
               
               Conread position:3-168
               
               
               Cow position:chr28:5609735-5609896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:3-171
               
               
               Cow position:chr28:2279419-2279578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:3-175
               
               
               Cow position:chr28:8359083-8358913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):149, 0

               
               
               Conread position:3-176
               
               
               Cow position:chr28:18176061-18176234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-178
               
               
               Cow position:chr28:5402860-5403031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:3-179
               
               
               Cow position:chr28:28903376-28903552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):159, 72

               
               
               Conread position:3-181
               
               
               Cow position:chr28:6358227-6358406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr28:5674055-5673881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):87, 52

               
               
               Conread position:3-183
               
               
               Cow position:chr28:13048098-13048277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:144
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):171, 0

               
               
               Conread position:3-196
               
               
               Cow position:chr28:13245747-13245555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):190, 0

               
               
               Conread position:3-198
               
               
               Cow position:chr28:25827545-25827740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:5-183
               
               
               Cow position:chr28:34230412-34230234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:5-184
               
               
               Cow position:chr28:3143704-3143870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:7-183
               
               
               Cow position:chr28:3200641-3200465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:7-183
               
               
               Cow position:chr28:5236416-5236598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:7-183
               
               
               Cow position:chr28:11059670-11059507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:7-183
               
               
               Cow position:chr28:19262405-19262581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-121
               
               
               Cow position:chr28:8165035-8165148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:94
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-130
               
               
               Cow position:chr28:14657894-14657772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-131
               
               
               Cow position:chr28:22278447-22278574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-133
               
               
               Cow position:chr28:22182955-22183085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:8-135
               
               
               Cow position:chr28:21263332-21263211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-136
               
               
               Cow position:chr28:24767586-24767457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:8-145
               
               
               Cow position:chr28:4866400-4866529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-147
               
               
               Cow position:chr28:34830335-34830196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr28:3759175-3759031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr28:5436908-5437044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr28:9705834-9705691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr28:11828781-11828921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-149
               
               
               Cow position:chr28:4077159-4077306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:8-149
               
               
               Cow position:chr28:16569982-16569845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-153
               
               
               Cow position:chr28:6301262-6301117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-154
               
               
               Cow position:chr28:16856928-16857072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-154
               
               
               Cow position:chr28:26867976-26868116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-155
               
               
               Cow position:chr28:3678537-3678396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-155
               
               
               Cow position:chr28:8936326-8936184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:109
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:8-156
               
               
               Cow position:chr28:21744890-21744748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-158
               
               
               Cow position:chr28:29988931-29989079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-160
               
               
               Cow position:chr28:11562065-11562217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-164
               
               
               Cow position:chr28:4870618-4870780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:8-168
               
               
               Cow position:chr28:10958977-10958823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-168
               
               
               Cow position:chr28:19395041-19394896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:8-169
               
               
               Cow position:chr28:31223379-31223541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):108, 69

               
               
               Conread position:8-170
               
               
               Cow position:chr28:11006907-11006745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):65, 46

               
               
               Conread position:8-170
               
               
               Cow position:chr28:22085367-22085523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-171
               
               
               Cow position:chr28:3406234-3406397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-171
               
               
               Cow position:chr28:5273249-5273412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-171
               
               
               Cow position:chr28:20174016-20173857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):75, 97

               
               
               Conread position:8-173
               
               
               Cow position:chr28:2825600-2825435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-175
               
               
               Cow position:chr28:26530689-26530852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-176
               
               
               Cow position:chr28:659109-659282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):54, 37

               
               
               Conread position:8-176
               
               
               Cow position:chr28:4876616-4876456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-176
               
               
               Cow position:chr28:21845132-21844970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr28:4046022-4045857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr28:19024628-19024443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr28:5818016-5817850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr28:7644922-7644748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):120, 103

               
               
               Conread position:8-181
               
               
               Cow position:chr28:8827342-8827167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):73, 168

               
               
               Conread position:8-181
               
               
               Cow position:chr28:18369835-18369999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr28:662278-662113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):94, 47

               
               
               Conread position:8-182
               
               
               Cow position:chr28:4159142-4158962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr28:5144336-5144514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr28:7014632-7014460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr28:7557552-7557727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr28:16879746-16879580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr28:19564057-19564221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr28:33884580-33884409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):33, 49

               
               
               Conread position:8-183
               
               
               Cow position:chr28:751406-751233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr28:4074155-4073975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr28:4937061-4937236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr28:5188252-5188423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):118, 56

               
               
               Conread position:8-183
               
               
               Cow position:chr28:5232116-5231944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr28:8347912-8347737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr28:11346311-11346481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr28:11398616-11398791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr28:11411361-11411530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):150, 47

               
               
               Conread position:8-183
               
               
               Cow position:chr28:17071518-17071343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr28:22133086-22132917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr28:26055656-26055486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr28:26982558-26982732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr28:27218503-27218329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr28:30293407-30293583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):61, 149

               
               
               Conread position:8-184
               
               
               Cow position:chr28:777854-777680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):92, 54

               
               
               Conread position:8-184
               
               
               Cow position:chr28:2821439-2821258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr28:3449487-3449308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):97, 47

               
               
               Conread position:8-184
               
               
               Cow position:chr28:4138489-4138666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):46, 71

               
               
               Conread position:8-184
               
               
               Cow position:chr28:4186081-4185911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr28:5552529-5552709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):49, 76

               
               
               Conread position:8-184
               
               
               Cow position:chr28:5630277-5630103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr28:6563716-6563893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr28:8291591-8291434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr28:10480625-10480806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):43, 117

               
               
               Conread position:8-184
               
               
               Cow position:chr28:11814901-11815073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):118, 47

               
               
               Conread position:8-184
               
               
               Cow position:chr28:11866490-11866660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr28:12951594-12951427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr28:15362756-15362584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):75, 47

               
               
               Conread position:8-184
               
               
               Cow position:chr28:18797488-18797325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr28:19038840-19039014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr28:19994768-19994941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):84, 142

               
               
               Conread position:8-185
               
               
               Cow position:chr28:10495121-10495293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:8-185
               
               
               Cow position:chr28:12933555-12933730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):150, 48

               
               
               Conread position:8-185
               
               
               Cow position:chr28:20968398-20968576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:8-185
               
               
               Cow position:chr28:28765722-28765899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-187
               
               
               Cow position:chr28:20013630-20013437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr28:7697801-7697980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr28:17680803-17680620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:147
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr28:19127994-19128170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr28:26743809-26743624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:8-198
               
               
               Cow position:chr28:26820098-26820285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):46, 111

               
               
               Conread position:8-201
               
               
               Cow position:chr28:18770268-18770073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):50, 136

               
               
               Conread position:8-214
               
               
               Cow position:chr28:26826400-26826195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):185, 149

               
               
               Conread position:8-215
               
               
               Cow position:chr28:5441719-5441923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):58, 33

               
               
               Conread position:8-292
               
               
               Cow position:chr28:19216990-19216720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:9-131
               
               
               Cow position:chr28:3311044-3311166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:9-154
               
               
               Cow position:chr28:9677843-9677704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:9-181
               
               
               Cow position:chr28:26943975-26944150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):123, 78

               
               
               Conread position:9-183
               
               
               Cow position:chr28:19361916-19361742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:9-184
               
               
               Cow position:chr28:2819950-2819780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):7, 47

               
               
               Conread position:9-184
               
               
               Cow position:chr28:3011090-3011264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):108, 132

               
               
               Conread position:10-121
               
               
               Cow position:chr28:5428581-5428686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:93
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:10-145
               
               
               Cow position:chr28:17620183-17620317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:10-159
               
               
               Cow position:chr28:30921881-30922032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:10-183
               
               
               Cow position:chr28:4643594-4643764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:10-184
               
               
               Cow position:chr28:2899174-2898994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:11-144
               
               
               Cow position:chr28:21118855-21118722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-148
               
               
               Cow position:chr28:7131916-7132049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):120, 51

               
               
               Conread position:11-148
               
               
               Cow position:chr28:8655991-8656125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:11-152
               
               
               Cow position:chr28:16200565-16200706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-162
               
               
               Cow position:chr28:10606463-10606609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):138, 18

               
               
               Conread position:11-167
               
               
               Cow position:chr28:2892431-2892274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:11-167
               
               
               Cow position:chr28:7964503-7964654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:11-174
               
               
               Cow position:chr28:3423952-3423792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-175
               
               
               Cow position:chr28:10252740-10252903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:11-176
               
               
               Cow position:chr28:22307184-22307022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:11-179
               
               
               Cow position:chr28:4013258-4013094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:11-179
               
               
               Cow position:chr28:4182176-4182011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:11-180
               
               
               Cow position:chr28:23296494-23296331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-181
               
               
               Cow position:chr28:8716205-8716379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):48, 167

               
               
               Conread position:11-181
               
               
               Cow position:chr28:9418773-9418958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr28:3445305-3445474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):79, 52

               
               
               Conread position:11-182
               
               
               Cow position:chr28:7267774-7267936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr28:10978013-10977848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):122, 13

               
               
               Conread position:11-182
               
               
               Cow position:chr28:13474474-13474307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):21, 46

               
               
               Conread position:11-182
               
               
               Cow position:chr28:20759518-20759694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):44, 115

               
               
               Conread position:11-183
               
               
               Cow position:chr28:6321994-6321823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):33, 97

               
               
               Conread position:11-183
               
               
               Cow position:chr28:8112095-8112268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr28:8259807-8259634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr28:9426177-9426344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr28:12672286-12672459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr28:12974059-12973887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr28:13133810-13133638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr28:18608190-18608362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr28:24672443-24672271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr28:26810856-26810685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):38, 58

               
               
               Conread position:11-183
               
               
               Cow position:chr28:27721871-27721708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr28:30303033-30303192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr28:34430248-34430417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):70, 66

               
               
               Conread position:11-184
               
               
               Cow position:chr28:4163405-4163574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):147, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr28:5236049-5235886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr28:8681262-8681420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr28:9100104-9099941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr28:34843397-34843567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:11-193
               
               
               Cow position:chr28:19221968-19222155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:11-197
               
               
               Cow position:chr28:13356191-13356381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:11-198
               
               
               Cow position:chr28:13160368-13160556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):161, 0

               
               
               Conread position:11-201
               
               
               Cow position:chr28:14242871-14242681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):98, 36

               
               
               Conread position:12-148
               
               
               Cow position:chr28:16252234-16252364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-149
               
               
               Cow position:chr28:21363917-21363780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-149
               
               
               Cow position:chr28:25518579-25518725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:12-154
               
               
               Cow position:chr28:22332705-22332563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-155
               
               
               Cow position:chr28:17739999-17739856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-156
               
               
               Cow position:chr28:3729843-3729986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:12-169
               
               
               Cow position:chr28:118788-118629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:12-175
               
               
               Cow position:chr28:3726034-3726195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):6, 43

               
               
               Conread position:12-179
               
               
               Cow position:chr28:1632471-1632646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:12-179
               
               
               Cow position:chr28:3484760-3484590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):61, 42

               
               
               Conread position:12-179
               
               
               Cow position:chr28:8787713-8787550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):65, 43

               
               
               Conread position:12-180
               
               
               Cow position:chr28:13527373-13527205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):66, 161

               
               
               Conread position:12-180
               
               
               Cow position:chr28:32014959-32014793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):157, 56

               
               
               Conread position:12-182
               
               
               Cow position:chr28:8396503-8396342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr28:9109385-9109223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr28:21868631-21868464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr28:30902295-30902133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr28:117584-117757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr28:2524119-2523949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr28:10053155-10053323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):150, 43

               
               
               Conread position:12-184
               
               
               Cow position:chr28:3137727-3137548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr28:10615773-10615941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:148
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr28:11559459-11559627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:12-201
               
               
               Cow position:chr28:7008807-7008989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:13-175
               
               
               Cow position:chr28:20281926-20281772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:13-177
               
               
               Cow position:chr28:23460317-23460159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:13-181
               
               
               Cow position:chr28:22630177-22630020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:13-182
               
               
               Cow position:chr28:26531105-26531270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:13-184
               
               
               Cow position:chr28:33322630-33322462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):121, 42

               
               
               Conread position:14-140
               
               
               Cow position:chr28:3494533-3494404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:14-148
               
               
               Cow position:chr28:9639825-9639692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:100
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:14-148
               
               
               Cow position:chr28:26574574-26574451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:14-148
               
               
               Cow position:chr28:29500579-29500441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:14-149
               
               
               Cow position:chr28:26960741-26960869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:14-174
               
               
               Cow position:chr28:11827860-11827703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:14-184
               
               
               Cow position:chr28:7350825-7350659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:14-184
               
               
               Cow position:chr28:20397196-20397365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:145
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:14-184
               
               
               Cow position:chr28:24064718-24064890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):42, 79

               
               
               Conread position:14-184
               
               
               Cow position:chr28:28602927-28602758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):160, 0

               
               
               Conread position:14-185
               
               
               Cow position:chr28:4022848-4022677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:139
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:15-182
               
               
               Cow position:chr28:20046713-20046560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:15-183
               
               
               Cow position:chr28:4881072-4881234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:143
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:15-184
               
               
               Cow position:chr28:4307722-4307892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:15-184
               
               
               Cow position:chr28:10298015-10297861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:15-184
               
               
               Cow position:chr28:21008499-21008660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:18-155
               
               
               Cow position:chr28:2077669-2077534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:18-169
               
               
               Cow position:chr28:34464085-34463934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:18-182
               
               
               Cow position:chr28:3408054-3408211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:18-191
               
               
               Cow position:chr28:25700700-25700865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:19-149
               
               
               Cow position:chr28:24651440-24651566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:19-167
               
               
               Cow position:chr28:4311496-4311638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:19-178
               
               
               Cow position:chr28:13448291-13448134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:19-184
               
               
               Cow position:chr28:25400043-25399877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):35, 97

               
               
               Conread position:19-191
               
               
               Cow position:chr28:11307347-11307520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:19-191
               
               
               Cow position:chr28:23793144-23793313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):142, 36

               
               
               Conread position:19-201
               
               
               Cow position:chr28:24707075-24706886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):51, 172

               
               
               Conread position:20-168
               
               
               Cow position:chr28:24082436-24082291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):60, 42

               
               
               Conread position:20-182
               
               
               Cow position:chr28:24996453-24996606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:20-183
               
               
               Cow position:chr28:6283323-6283482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:20-191
               
               
               Cow position:chr28:3492621-3492785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):136, 36

               
               
               Conread position:21-169
               
               
               Cow position:chr28:5867889-5867743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):21, 51

               
               
               Conread position:21-170
               
               
               Cow position:chr28:25459919-25459772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:109
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:22-186
               
               
               Cow position:chr28:2777694-2777533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:25-184
               
               
               Cow position:chr28:9812433-9812283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:26-148
               
               
               Cow position:chr28:24726280-24726396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:26-176
               
               
               Cow position:chr28:7541704-7541863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:26-184
               
               
               Cow position:chr28:8167193-8167345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:26-191
               
               
               Cow position:chr28:7388610-7388769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:27-184
               
               
               Cow position:chr28:5577692-5577530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):43, 10

               
               
               Conread position:30-156
               
               
               Cow position:chr28:2090689-2090564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:33-183
               
               
               Cow position:chr28:13241408-13241559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:33-184
               
               
               Cow position:chr28:15601432-15601282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):44, 120

               
               
               Conread position:34-155
               
               
               Cow position:chr28:4227631-4227510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):27, 108

               
               
               Conread position:38-182
               
               
               Cow position:chr28:7333738-7333594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:40-156
               
               
               Cow position:chr28:26269535-26269419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:40-183
               
               
               Cow position:chr28:30081576-30081718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:40-185
               
               
               Cow position:chr28:5204340-5204199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:41-184
               
               
               Cow position:chr28:8149484-8149627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:42-183
               
               
               Cow position:chr28:25763170-25763028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:105
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:44-192
               
               
               Cow position:chr28:34097476-34097616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:45-182
               
               
               Cow position:chr28:7619006-7619143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-146
               
               
               Cow position:chr28:11115226-11115129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:86
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:48-177
               
               
               Cow position:chr28:2772851-2772723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:48-183
               
               
               Cow position:chr28:2752353-2752488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-183
               
               
               Cow position:chr28:31109860-31109998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:104
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr28:25677197-25677337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr28:27161186-27161321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr28:29041911-29042049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:48-185
               
               
               Cow position:chr28:2743223-2743085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:48-197
               
               
               Cow position:chr28:12385149-12385302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:48-201
               
               
               Cow position:chr28:29434283-29434439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):12, 142

               
               
               Conread position:49-161
               
               
               Cow position:chr28:8258964-8258852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:88
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:49-173
               
               
               Cow position:chr28:11365389-11365511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:51-182
               
               
               Cow position:chr28:5365985-5366116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):37, 85

               
               
               Conread position:51-184
               
               
               Cow position:chr28:4355684-4355553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:53-184
               
               
               Cow position:chr28:20313413-20313282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:55-179
               
               
               Cow position:chr28:7265483-7265355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:55-179
               
               
               Cow position:chr28:23047752-23047628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):113, 117

               
               
               Conread position:55-184
               
               
               Cow position:chr28:17601420-17601549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:55-184
               
               
               Cow position:chr28:18533773-18533901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:55-184
               
               
               Cow position:chr28:21355365-21355236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:107
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-178
               
               
               Cow position:chr28:13090393-13090515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:94
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr28:25249487-25249359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-191
               
               
               Cow position:chr28:5650605-5650739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):69, 51

               
               
               Conread position:57-184
               
               
               Cow position:chr28:32174761-32174632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:64-182
               
               
               Cow position:chr28:23410198-23410318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:64-184
               
               
               Cow position:chr28:17398109-17398229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-184
               
               
               Cow position:chr28:17414350-17414470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:65-177
               
               
               Cow position:chr28:22321543-22321431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:65-184
               
               
               Cow position:chr28:32179817-32179702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:66-181
               
               
               Cow position:chr28:10247611-10247497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:95
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:66-184
               
               
               Cow position:chr28:26922245-26922363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:92
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:67-184
               
               
               Cow position:chr28:5166889-5166773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:95
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:67-195
               
               
               Cow position:chr28:16692045-16691918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:68-184
               
               
               Cow position:chr28:5152722-5152606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:71-184
               
               
               Cow position:chr28:4765794-4765679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:76-180
               
               
               Cow position:chr28:32365956-32365853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:86
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:77-183
               
               
               Cow position:chr28:16389018-16388912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:90
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:81-191
               
               
               Cow position:chr28:3160846-3160955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:90
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:1-131
               
               
               Cow position:chr29:7143477-7143346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:109
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):54, 7

               
               
               Conread position:1-185
               
               
               Cow position:chr29:30441117-30440931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):76, 8

               
               
               Conread position:1-201
               
               
               Cow position:chr29:26631227-26631028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):69, 7

               
               
               Conread position:1-208
               
               
               Cow position:chr29:28775284-28775484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:2-175
               
               
               Cow position:chr29:40916986-40916815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):18, 134

               
               
               Conread position:3-118
               
               
               Cow position:chr29:16164257-16164372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:93
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-131
               
               
               Cow position:chr29:24119321-24119449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-141
               
               
               Cow position:chr29:11685346-11685208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-150
               
               
               Cow position:chr29:38732332-38732185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-153
               
               
               Cow position:chr29:8605761-8605906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:3-161
               
               
               Cow position:chr29:22577001-22577158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:3-163
               
               
               Cow position:chr29:35189786-35189626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-169
               
               
               Cow position:chr29:14746955-14746793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:3-169
               
               
               Cow position:chr29:23819207-23819377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:3-177
               
               
               Cow position:chr29:44684274-44684104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:3-181
               
               
               Cow position:chr29:25793318-25793147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:3-181
               
               
               Cow position:chr29:35677364-35677542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr29:1933393-1933572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr29:2744092-2744268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr29:5109005-5109185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):75, 100

               
               
               Conread position:3-183
               
               
               Cow position:chr29:17297315-17297135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:147
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr29:21018567-21018747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr29:23845017-23844837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr29:23913220-23913394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr29:25475110-25474922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr29:27524656-27524836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr29:28420934-28420755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):145, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr29:30827585-30827405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr29:32656613-32656432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):100, 154

               
               
               Conread position:3-183
               
               
               Cow position:chr29:32894434-32894262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:3-184
               
               
               Cow position:chr29:15947346-15947165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:151
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-184
               
               
               Cow position:chr29:29578794-29578975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-189
               
               
               Cow position:chr29:14375702-14375888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-191
               
               
               Cow position:chr29:3549782-3549594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-191
               
               
               Cow position:chr29:14501772-14501584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-191
               
               
               Cow position:chr29:15944738-15944551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:3-191
               
               
               Cow position:chr29:16609927-16609739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-191
               
               
               Cow position:chr29:23114823-23115010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:3-191
               
               
               Cow position:chr29:31981999-31981822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:3-191
               
               
               Cow position:chr29:33511550-33511738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-202
               
               
               Cow position:chr29:32713341-32713141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:3-204
               
               
               Cow position:chr29:26211230-26211030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:5-148
               
               
               Cow position:chr29:2414575-2414718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:5-180
               
               
               Cow position:chr29:5953681-5953857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:5-184
               
               
               Cow position:chr29:4441030-4441207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):153, 50

               
               
               Conread position:7-156
               
               
               Cow position:chr29:42405122-42404973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:7-183
               
               
               Cow position:chr29:38347854-38348029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):134, 95

               
               
               Conread position:7-184
               
               
               Cow position:chr29:7310836-7310675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-125
               
               
               Cow position:chr29:4741217-4741334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:95
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-134
               
               
               Cow position:chr29:10994683-10994560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:8-139
               
               
               Cow position:chr29:36357300-36357169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-143
               
               
               Cow position:chr29:30920228-30920364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):60, 19

               
               
               Conread position:8-148
               
               
               Cow position:chr29:14828055-14828194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:8-149
               
               
               Cow position:chr29:25907424-25907279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:8-149
               
               
               Cow position:chr29:33143184-33143321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-155
               
               
               Cow position:chr29:28257314-28257168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:8-156
               
               
               Cow position:chr29:22652491-22652349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-157
               
               
               Cow position:chr29:10203941-10203797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-158
               
               
               Cow position:chr29:10191873-10192015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):125, 37

               
               
               Conread position:8-158
               
               
               Cow position:chr29:23678873-23678734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-161
               
               
               Cow position:chr29:16735398-16735245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-161
               
               
               Cow position:chr29:37293199-37293060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-171
               
               
               Cow position:chr29:8798837-8799004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:8-171
               
               
               Cow position:chr29:21508175-21508338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-171
               
               
               Cow position:chr29:26602372-26602210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:8-173
               
               
               Cow position:chr29:17804702-17804544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-175
               
               
               Cow position:chr29:8163655-8163822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-175
               
               
               Cow position:chr29:22534135-22533968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-175
               
               
               Cow position:chr29:23142160-23142327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):162, 152

               
               
               Conread position:8-176
               
               
               Cow position:chr29:25432626-25432457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):31, 18

               
               
               Conread position:8-177
               
               
               Cow position:chr29:17436919-17436756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:8-177
               
               
               Cow position:chr29:26017328-26017497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr29:9709865-9709698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr29:18449966-18450135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr29:29324248-29324417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):45, 114

               
               
               Conread position:8-179
               
               
               Cow position:chr29:41422737-41422906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):159, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr29:43088478-43088314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr29:16196027-16195843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):46, 165

               
               
               Conread position:8-181
               
               
               Cow position:chr29:16290895-16290727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):80, 31

               
               
               Conread position:8-181
               
               
               Cow position:chr29:21196480-21196648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):60, 32

               
               
               Conread position:8-181
               
               
               Cow position:chr29:32799531-32799710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):62, 147

               
               
               Conread position:8-182
               
               
               Cow position:chr29:3685349-3685519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):58, 71

               
               
               Conread position:8-182
               
               
               Cow position:chr29:4070792-4070628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr29:5408970-5409141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr29:15796659-15796486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:8-182
               
               
               Cow position:chr29:15798126-15797952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:8-182
               
               
               Cow position:chr29:16272916-16272742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr29:16657863-16657699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr29:21645489-21645318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):46, 116

               
               
               Conread position:8-182
               
               
               Cow position:chr29:23825040-23825210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr29:25737244-25737414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr29:31929158-31928989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr29:33321521-33321351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):150, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr29:5830845-5831021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr29:8634824-8634653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr29:14577029-14576858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr29:17222588-17222412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):71, 26

               
               
               Conread position:8-183
               
               
               Cow position:chr29:23874634-23874459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr29:31489496-31489318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr29:38754766-38754940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):123, 47

               
               
               Conread position:8-183
               
               
               Cow position:chr29:38858040-38858214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):52, 26

               
               
               Conread position:8-184
               
               
               Cow position:chr29:396574-396411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr29:3293115-3292946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr29:4423278-4423441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr29:16279149-16278986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr29:19949477-19949308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr29:36781138-36781306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr29:37618480-37618303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):148, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr29:41531023-41530848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr29:44901489-44901668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):118, 54

               
               
               Conread position:8-188
               
               
               Cow position:chr29:19061589-19061777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):47, 105

               
               
               Conread position:8-191
               
               
               Cow position:chr29:4520504-4520331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr29:11915993-11915818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):13, 39

               
               
               Conread position:8-191
               
               
               Cow position:chr29:12025304-12025476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr29:13028622-13028435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):54, 156

               
               
               Conread position:8-191
               
               
               Cow position:chr29:19910135-19909947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr29:22734933-22735114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):50, 29

               
               
               Conread position:8-191
               
               
               Cow position:chr29:24365725-24365905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr29:34359654-34359829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:150
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-196
               
               
               Cow position:chr29:19125502-19125306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:8-199
               
               
               Cow position:chr29:26540368-26540557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):68, 47

               
               
               Conread position:8-202
               
               
               Cow position:chr29:7954792-7954985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):59, 74

               
               
               Conread position:8-206
               
               
               Cow position:chr29:34297399-34297592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:9-159
               
               
               Cow position:chr29:18748216-18748367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):43, 28

               
               
               Conread position:9-160
               
               
               Cow position:chr29:27042447-27042293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:9-173
               
               
               Cow position:chr29:27911763-27911602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:9-183
               
               
               Cow position:chr29:3711547-3711378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:9-183
               
               
               Cow position:chr29:23637503-23637679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:9-183
               
               
               Cow position:chr29:29795209-29795383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:9-184
               
               
               Cow position:chr29:29057347-29057177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:9-184
               
               
               Cow position:chr29:31934547-31934377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:9-191
               
               
               Cow position:chr29:27926945-27926767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:10-154
               
               
               Cow position:chr29:29447554-29447409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):121, 56

               
               
               Conread position:10-157
               
               
               Cow position:chr29:11081224-11081371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:10-160
               
               
               Cow position:chr29:4484267-4484117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):144, 49

               
               
               Conread position:10-166
               
               
               Cow position:chr29:22128034-22127886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:10-179
               
               
               Cow position:chr29:34760231-34760410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):48, 155

               
               
               Conread position:10-180
               
               
               Cow position:chr29:24293040-24292870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):60, 21

               
               
               Conread position:10-184
               
               
               Cow position:chr29:23698142-23697975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):138, 45

               
               
               Conread position:10-184
               
               
               Cow position:chr29:38581162-38580978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):36, 146

               
               
               Conread position:10-212
               
               
               Cow position:chr29:24605066-24604867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:11-145
               
               
               Cow position:chr29:7040699-7040835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:11-145
               
               
               Cow position:chr29:22019018-22019150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:11-148
               
               
               Cow position:chr29:2219556-2219421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-155
               
               
               Cow position:chr29:23991660-23991803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:11-158
               
               
               Cow position:chr29:34688741-34688882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:11-161
               
               
               Cow position:chr29:11894869-11894719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-176
               
               
               Cow position:chr29:29588756-29588920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:11-176
               
               
               Cow position:chr29:40117734-40117578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr29:20526993-20527163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr29:26411297-26411469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr29:86835-87012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):53, 88

               
               
               Conread position:11-183
               
               
               Cow position:chr29:7955819-7955991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):67, 105

               
               
               Conread position:11-183
               
               
               Cow position:chr29:16200307-16200479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr29:21706228-21706397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):33, 42

               
               
               Conread position:11-183
               
               
               Cow position:chr29:22720478-22720652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):119, 44

               
               
               Conread position:11-183
               
               
               Cow position:chr29:24187894-24188066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr29:29973844-29974015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):166, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr29:30294702-30294866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr29:32733464-32733298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr29:35084054-35084223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr29:35458600-35458772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):78, 126

               
               
               Conread position:11-183
               
               
               Cow position:chr29:38582139-38581972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):149, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr29:31651571-31651409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):128, 52

               
               
               Conread position:11-184
               
               
               Cow position:chr29:32655925-32656094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):120, 49

               
               
               Conread position:11-184
               
               
               Cow position:chr29:35292255-35292090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):134, 44

               
               
               Conread position:11-184
               
               
               Cow position:chr29:42630286-42630119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:11-191
               
               
               Cow position:chr29:43544436-43544611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:11-201
               
               
               Cow position:chr29:40633822-40633625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):79, 190

               
               
               Conread position:12-135
               
               
               Cow position:chr29:41094287-41094164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-153
               
               
               Cow position:chr29:7414665-7414530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):121, 15

               
               
               Conread position:12-174
               
               
               Cow position:chr29:42865728-42865567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:12-176
               
               
               Cow position:chr29:19363876-19363717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:12-176
               
               
               Cow position:chr29:22723767-22723607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:12-177
               
               
               Cow position:chr29:501368-501202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):55, 15

               
               
               Conread position:12-177
               
               
               Cow position:chr29:36632692-36632855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr29:5893017-5892845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr29:17110123-17109960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr29:19420449-19420613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr29:30227112-30227275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr29:5046824-5046652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr29:12900382-12900552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr29:18878311-18878482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:142
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr29:22068573-22068741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr29:36220711-36220533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr29:40994711-40994891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):39, 143

               
               
               Conread position:12-184
               
               
               Cow position:chr29:5520316-5520487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:140
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr29:24051210-24051383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):56, 110

               
               
               Conread position:12-184
               
               
               Cow position:chr29:30548944-30548774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr29:40583956-40583791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):60, 26

               
               
               Conread position:12-187
               
               
               Cow position:chr29:26539399-26539230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:12-191
               
               
               Cow position:chr29:40097149-40096957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):44, 148

               
               
               Conread position:12-210
               
               
               Cow position:chr29:4053176-4053369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):180, 43

               
               
               Conread position:13-184
               
               
               Cow position:chr29:4023163-4023002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:14-157
               
               
               Cow position:chr29:3826133-3825997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:14-167
               
               
               Cow position:chr29:3538519-3538661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:14-168
               
               
               Cow position:chr29:35737149-35737311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):36, 153

               
               
               Conread position:14-170
               
               
               Cow position:chr29:33393854-33393690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:14-175
               
               
               Cow position:chr29:4648044-4648202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:14-176
               
               
               Cow position:chr29:22028795-22028946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:14-178
               
               
               Cow position:chr29:685011-685169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:14-182
               
               
               Cow position:chr29:9378801-9378637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:14-182
               
               
               Cow position:chr29:34358811-34358978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):40, 29

               
               
               Conread position:14-183
               
               
               Cow position:chr29:21443170-21443339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-184
               
               
               Cow position:chr29:8669521-8669364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:14-184
               
               
               Cow position:chr29:28979347-28979500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:15-156
               
               
               Cow position:chr29:28279120-28279261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:18-184
               
               
               Cow position:chr29:2056219-2056059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:19-149
               
               
               Cow position:chr29:109841-109720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:19-149
               
               
               Cow position:chr29:13091307-13091434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:19-182
               
               
               Cow position:chr29:9310764-9310600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):6, 128

               
               
               Conread position:19-183
               
               
               Cow position:chr29:20167588-20167423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:19-183
               
               
               Cow position:chr29:23812883-23813040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):66, 32

               
               
               Conread position:19-184
               
               
               Cow position:chr29:13639202-13639369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):34, 25

               
               
               Conread position:19-185
               
               
               Cow position:chr29:4121017-4120851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:19-191
               
               
               Cow position:chr29:24624408-24624241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):66, 35

               
               
               Conread position:20-140
               
               
               Cow position:chr29:18605499-18605618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:20-149
               
               
               Cow position:chr29:27487348-27487219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:20-181
               
               
               Cow position:chr29:19187186-19187027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:20-183
               
               
               Cow position:chr29:35259145-35258984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:21-183
               
               
               Cow position:chr29:34745498-34745658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:25-156
               
               
               Cow position:chr29:5653097-5652966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:26-184
               
               
               Cow position:chr29:629696-629536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:27-155
               
               
               Cow position:chr29:936356-936234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-149
               
               
               Cow position:chr29:17663604-17663728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:29-179
               
               
               Cow position:chr29:1325589-1325446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:29-184
               
               
               Cow position:chr29:13867057-13867212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):5, 37

               
               
               Conread position:34-152
               
               
               Cow position:chr29:45584342-45584226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:97
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):32, 45

               
               
               Conread position:34-183
               
               
               Cow position:chr29:7966391-7966245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:36-182
               
               
               Cow position:chr29:40615343-40615493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):20, 121

               
               
               Conread position:37-177
               
               
               Cow position:chr29:31814086-31813943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:37-182
               
               
               Cow position:chr29:42406838-42406693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:39-183
               
               
               Cow position:chr29:21509993-21509851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:47-184
               
               
               Cow position:chr29:7103693-7103556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-168
               
               
               Cow position:chr29:29940776-29940654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr29:16365751-16365891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:48-191
               
               
               Cow position:chr29:40298886-40299029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-201
               
               
               Cow position:chr29:6844498-6844650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):106, 133

               
               
               Conread position:48-204
               
               
               Cow position:chr29:28559513-28559360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:48-206
               
               
               Cow position:chr29:1022429-1022273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:49-182
               
               
               Cow position:chr29:19059950-19060082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:107
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:49-184
               
               
               Cow position:chr29:1219998-1220133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:49-184
               
               
               Cow position:chr29:17409468-17409333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:50-184
               
               
               Cow position:chr29:2262863-2262994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:51-161
               
               
               Cow position:chr29:1402900-1402787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:93
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:51-161
               
               
               Cow position:chr29:28242212-28242320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:94
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:51-184
               
               
               Cow position:chr29:11647225-11647092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:52-187
               
               
               Cow position:chr29:32926235-32926099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:55-163
               
               
               Cow position:chr29:30424672-30424779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:55-191
               
               
               Cow position:chr29:22936398-22936263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):55, 103

               
               
               Conread position:56-182
               
               
               Cow position:chr29:26653917-26654046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:56-183
               
               
               Cow position:chr29:16672613-16672490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:56-193
               
               
               Cow position:chr29:19176781-19176924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:57-184
               
               
               Cow position:chr29:6286036-6286163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:103
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-184
               
               
               Cow position:chr29:22519009-22519129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:99
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):53, 41

               
               
               Conread position:65-205
               
               
               Cow position:chr29:25333344-25333481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:66-184
               
               
               Cow position:chr29:5789145-5789027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:95
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):12, 71

               
               
               Conread position:67-184
               
               
               Cow position:chr29:4085423-4085311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:95
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:68-182
               
               
               Cow position:chr29:11053745-11053859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:93
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):10, 85

               
               
               Conread position:69-183
               
               
               Cow position:chr29:13372776-13372663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:71-164
               
               
               Cow position:chr29:6015237-6015144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:94
               
               
               Alignm identity:80
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:71-184
               
               
               Cow position:chr29:27819329-27819217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:91
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:74-184
               
               
               Cow position:chr29:27873709-27873599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:74-193
               
               
               Cow position:chr29:1229715-1229596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:95
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:80-184
               
               
               Cow position:chr29:8686432-8686328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:88
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:81-181
               
               
               Cow position:chr29:39285596-39285496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:83-196
               
               
               Cow position:chr29:16947822-16947707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:92
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:1-145
               
               
               Cow position:chr3:70319645-70319790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:107
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-170
               
               
               Cow position:chr3:81400951-81401107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:1-181
               
               
               Cow position:chr3:72027794-72027617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):174, 7

               
               
               Conread position:1-184
               
               
               Cow position:chr3:4319874-4319687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):24, 7

               
               
               Conread position:1-184
               
               
               Cow position:chr3:46005859-46006042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):57, 126

               
               
               Conread position:2-177
               
               
               Cow position:chr3:45279624-45279449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-187
               
               
               Cow position:chr3:19788675-19788857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):9, 54

               
               
               Conread position:3-128
               
               
               Cow position:chr3:29944014-29943888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:3-130
               
               
               Cow position:chr3:78115436-78115563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-147
               
               
               Cow position:chr3:62998841-62998979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:3-150
               
               
               Cow position:chr3:11607971-11607832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:3-161
               
               
               Cow position:chr3:46259866-46259709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:3-168
               
               
               Cow position:chr3:79398299-79398136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):152, 0

               
               
               Conread position:3-168
               
               
               Cow position:chr3:83199667-83199503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:3-173
               
               
               Cow position:chr3:42796364-42796533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):154, 74

               
               
               Conread position:3-175
               
               
               Cow position:chr3:54049875-54050046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:3-177
               
               
               Cow position:chr3:80733696-80733870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-180
               
               
               Cow position:chr3:45744064-45743885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):128, 52

               
               
               Conread position:3-181
               
               
               Cow position:chr3:18699954-18700132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-182
               
               
               Cow position:chr3:31298003-31298185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:3-182
               
               
               Cow position:chr3:65308299-65308476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:3-182
               
               
               Cow position:chr3:69144850-69144671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-182
               
               
               Cow position:chr3:72255264-72255441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr3:1830419-1830596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr3:6728167-6728353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr3:7381678-7381852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr3:8591214-8591395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr3:11254011-11254191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr3:13301695-13301873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr3:14589076-14589264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):128, 90

               
               
               Conread position:3-183
               
               
               Cow position:chr3:32787616-32787437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):76, 41

               
               
               Conread position:3-183
               
               
               Cow position:chr3:33329988-33329794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr3:35624389-35624568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr3:39661300-39661479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):149, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr3:44960099-44959919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr3:52487783-52487592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):48, 169

               
               
               Conread position:3-183
               
               
               Cow position:chr3:60933572-60933394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr3:70756485-70756664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:151
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr3:72745402-72745586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):52, 6

               
               
               Conread position:3-183
               
               
               Cow position:chr3:80709710-80709890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr3:84174458-84174278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-184
               
               
               Cow position:chr3:2638087-2637902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:3-184
               
               
               Cow position:chr3:45822865-45823046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-184
               
               
               Cow position:chr3:58134530-58134710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:3-184
               
               
               Cow position:chr3:59035197-59035016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-184
               
               
               Cow position:chr3:71238304-71238130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:3-191
               
               
               Cow position:chr3:58317789-58317979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:3-191
               
               
               Cow position:chr3:73525081-73525269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-192
               
               
               Cow position:chr3:63202076-63201885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):174, 0

               
               
               Conread position:3-196
               
               
               Cow position:chr3:32376966-32376778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:3-200
               
               
               Cow position:chr3:14211832-14212023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):155, 50

               
               
               Conread position:3-203
               
               
               Cow position:chr3:5707056-5707256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-206
               
               
               Cow position:chr3:32570012-32569807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:3-206
               
               
               Cow position:chr3:48851813-48852016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:4-183
               
               
               Cow position:chr3:83770887-83770708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:5-149
               
               
               Cow position:chr3:43895911-43896049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:5-177
               
               
               Cow position:chr3:54557818-54557657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:5-182
               
               
               Cow position:chr3:67407215-67407388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:5-183
               
               
               Cow position:chr3:33252740-33252912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:5-183
               
               
               Cow position:chr3:66900574-66900756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:5-184
               
               
               Cow position:chr3:15153840-15153667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:5-184
               
               
               Cow position:chr3:44534382-44534555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:5-184
               
               
               Cow position:chr3:48253031-48252861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:5-184
               
               
               Cow position:chr3:73395267-73395093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:7-158
               
               
               Cow position:chr3:17039767-17039614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:7-178
               
               
               Cow position:chr3:36411933-36412106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:7-181
               
               
               Cow position:chr3:18459384-18459549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:7-183
               
               
               Cow position:chr3:14801897-14801721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:7-184
               
               
               Cow position:chr3:53270983-53270806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:7-184
               
               
               Cow position:chr3:83988687-83988509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):60, 115

               
               
               Conread position:8-112
               
               
               Cow position:chr3:42933632-42933528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:87
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-130
               
               
               Cow position:chr3:58497809-58497687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-134
               
               
               Cow position:chr3:6547575-6547449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-138
               
               
               Cow position:chr3:44218917-44218787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-139
               
               
               Cow position:chr3:19641214-19641079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:8-139
               
               
               Cow position:chr3:22078227-22078096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-141
               
               
               Cow position:chr3:621590-621453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:8-141
               
               
               Cow position:chr3:58527526-58527401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:106
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-146
               
               
               Cow position:chr3:44594773-44594635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-146
               
               
               Cow position:chr3:49787705-49787572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-147
               
               
               Cow position:chr3:53552835-53552967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr3:3453731-3453591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr3:59604991-59604855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-149
               
               
               Cow position:chr3:40957979-40958116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-149
               
               
               Cow position:chr3:55105997-55106138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-149
               
               
               Cow position:chr3:74515187-74515327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):68, 41

               
               
               Conread position:8-149
               
               
               Cow position:chr3:77098675-77098812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:8-154
               
               
               Cow position:chr3:5003781-5003639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:8-155
               
               
               Cow position:chr3:31361572-31361430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:8-155
               
               
               Cow position:chr3:74050557-74050697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:8-156
               
               
               Cow position:chr3:635327-635181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:8-156
               
               
               Cow position:chr3:60186300-60186149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):94, 63

               
               
               Conread position:8-161
               
               
               Cow position:chr3:2016581-2016434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-161
               
               
               Cow position:chr3:61680466-61680316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:8-161
               
               
               Cow position:chr3:83934873-83934724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-164
               
               
               Cow position:chr3:17531587-17531742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:8-167
               
               
               Cow position:chr3:15859233-15859386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):80, 47

               
               
               Conread position:8-167
               
               
               Cow position:chr3:19044619-19044773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:8-167
               
               
               Cow position:chr3:55730317-55730476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-167
               
               
               Cow position:chr3:80958360-80958518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:8-168
               
               
               Cow position:chr3:23804654-23804496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):150, 47

               
               
               Conread position:8-171
               
               
               Cow position:chr3:23132019-23132180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:8-171
               
               
               Cow position:chr3:65022452-65022283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-171
               
               
               Cow position:chr3:78258601-78258766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):65, 88

               
               
               Conread position:8-172
               
               
               Cow position:chr3:17058398-17058558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-173
               
               
               Cow position:chr3:59610570-59610731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:8-173
               
               
               Cow position:chr3:70431583-70431418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):52, 114

               
               
               Conread position:8-173
               
               
               Cow position:chr3:76168480-76168645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-175
               
               
               Cow position:chr3:27286664-27286503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-175
               
               
               Cow position:chr3:79884331-79884501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:8-176
               
               
               Cow position:chr3:79893347-79893514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:8-177
               
               
               Cow position:chr3:3889428-3889584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-177
               
               
               Cow position:chr3:11027426-11027259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):161, 0

               
               
               Conread position:8-177
               
               
               Cow position:chr3:40212886-40213051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-177
               
               
               Cow position:chr3:68289832-68289663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):77, 154

               
               
               Conread position:8-178
               
               
               Cow position:chr3:20158223-20158050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:8-178
               
               
               Cow position:chr3:36190051-36189872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):38, 23

               
               
               Conread position:8-178
               
               
               Cow position:chr3:59828239-59828411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr3:30463027-30463192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):163, 19

               
               
               Conread position:8-179
               
               
               Cow position:chr3:39969714-39969882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):133, 47

               
               
               Conread position:8-179
               
               
               Cow position:chr3:59681758-59681923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-180
               
               
               Cow position:chr3:2648359-2648530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:8-180
               
               
               Cow position:chr3:9663020-9663192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-180
               
               
               Cow position:chr3:23037359-23037527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:8-180
               
               
               Cow position:chr3:51609035-51609206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:8-180
               
               
               Cow position:chr3:71496980-71497158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr3:986164-985993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr3:4071620-4071784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr3:12090826-12090654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):50, 115

               
               
               Conread position:8-181
               
               
               Cow position:chr3:13882369-13882542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):65, 121

               
               
               Conread position:8-181
               
               
               Cow position:chr3:43388976-43389149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr3:58101824-58101658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr3:62789801-62789973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):70, 154

               
               
               Conread position:8-181
               
               
               Cow position:chr3:70333820-70333986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr3:75777920-75778085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):134, 47

               
               
               Conread position:8-181
               
               
               Cow position:chr3:79271560-79271732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr3:3316659-3316837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):47, 132

               
               
               Conread position:8-182
               
               
               Cow position:chr3:7662006-7661834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):52, 143

               
               
               Conread position:8-182
               
               
               Cow position:chr3:10668730-10668901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):96, 47

               
               
               Conread position:8-182
               
               
               Cow position:chr3:22165266-22165437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr3:28937434-28937627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr3:32317680-32317853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr3:45314501-45314322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr3:47753386-47753204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr3:49363256-49363087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr3:54506855-54506685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr3:64196974-64196804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr3:64280789-64280953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):158, 47

               
               
               Conread position:8-182
               
               
               Cow position:chr3:76267825-76267997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:142
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr3:76270037-76269870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr3:1011641-1011463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):50, 72

               
               
               Conread position:8-183
               
               
               Cow position:chr3:2518392-2518562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):20, 45

               
               
               Conread position:8-183
               
               
               Cow position:chr3:2675181-2675006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr3:4120222-4120389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr3:5551660-5551835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr3:5703325-5703155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr3:7566272-7566440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr3:7763807-7763633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr3:10841965-10841789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):167, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr3:11281918-11281743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr3:13240924-13241099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr3:15973719-15973543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr3:16333953-16333774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr3:17134480-17134311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):154, 47

               
               
               Conread position:8-183
               
               
               Cow position:chr3:17456118-17456291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr3:18393253-18393417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):151, 45

               
               
               Conread position:8-183
               
               
               Cow position:chr3:21866889-21867061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr3:23920277-23920452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr3:24548685-24548860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr3:25945244-25945070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr3:29334261-29334437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr3:43233652-43233483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr3:45211453-45211278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr3:45667194-45667369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):127, 42

               
               
               Conread position:8-183
               
               
               Cow position:chr3:46792532-46792362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr3:49996568-49996746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr3:51033521-51033343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):46, 11

               
               
               Conread position:8-183
               
               
               Cow position:chr3:53318559-53318378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):56, 103

               
               
               Conread position:8-183
               
               
               Cow position:chr3:53592537-53592712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):26, 33

               
               
               Conread position:8-183
               
               
               Cow position:chr3:53604595-53604769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr3:55970664-55970484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):50, 90

               
               
               Conread position:8-183
               
               
               Cow position:chr3:56678198-56678374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):158, 88

               
               
               Conread position:8-183
               
               
               Cow position:chr3:57754326-57754499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr3:58452194-58452025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr3:59040719-59040546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr3:59702323-59702148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):54, 145

               
               
               Conread position:8-183
               
               
               Cow position:chr3:73335431-73335261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr3:74787575-74787407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr3:82084971-82084795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):47, 149

               
               
               Conread position:8-183
               
               
               Cow position:chr3:83889398-83889224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):148, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr3:2025352-2025172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr3:2506327-2506502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr3:3584489-3584323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):120, 48

               
               
               Conread position:8-184
               
               
               Cow position:chr3:5040154-5040331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):55, 85

               
               
               Conread position:8-184
               
               
               Cow position:chr3:8813952-8814137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr3:11640885-11640709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr3:13380129-13380299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr3:15160666-15160496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr3:18687050-18686882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr3:19793049-19792881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):85, 39

               
               
               Conread position:8-184
               
               
               Cow position:chr3:20021417-20021245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr3:20841731-20841897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr3:23471314-23471483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr3:27246818-27246983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr3:27976373-27976548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:146
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):31, 38

               
               
               Conread position:8-184
               
               
               Cow position:chr3:28896872-28897043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr3:35075021-35074854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr3:48810489-48810669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):48, 24

               
               
               Conread position:8-184
               
               
               Cow position:chr3:48900181-48900356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:148
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr3:51578175-51578347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):171, 45

               
               
               Conread position:8-184
               
               
               Cow position:chr3:52651931-52652105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):132, 46

               
               
               Conread position:8-184
               
               
               Cow position:chr3:53046509-53046683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):59, 150

               
               
               Conread position:8-184
               
               
               Cow position:chr3:53703798-53703987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):45, 96

               
               
               Conread position:8-184
               
               
               Cow position:chr3:55819898-55819734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr3:65237172-65237000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr3:65413125-65413302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr3:67930021-67930207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):48, 127

               
               
               Conread position:8-184
               
               
               Cow position:chr3:68587167-68586999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):95, 47

               
               
               Conread position:8-184
               
               
               Cow position:chr3:71231547-71231372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):66, 47

               
               
               Conread position:8-184
               
               
               Cow position:chr3:75238609-75238433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:144
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr3:76056139-76056309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr3:81234537-81234365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr3:83491229-83491062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:8-185
               
               
               Cow position:chr3:60597686-60597519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):81, 41

               
               
               Conread position:8-185
               
               
               Cow position:chr3:75966633-75966806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):91, 47

               
               
               Conread position:8-187
               
               
               Cow position:chr3:52608330-52608155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-187
               
               
               Cow position:chr3:55541168-55540987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:8-187
               
               
               Cow position:chr3:78071643-78071819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):164, 48

               
               
               Conread position:8-187
               
               
               Cow position:chr3:82195633-82195459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:8-189
               
               
               Cow position:chr3:62312947-62312768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):66, 46

               
               
               Conread position:8-189
               
               
               Cow position:chr3:62370206-62370027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):66, 47

               
               
               Conread position:8-191
               
               
               Cow position:chr3:3275744-3275565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):132, 45

               
               
               Conread position:8-191
               
               
               Cow position:chr3:8393489-8393319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr3:15443577-15443759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:149
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):158, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr3:19711187-19711369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):87, 116

               
               
               Conread position:8-191
               
               
               Cow position:chr3:23203080-23203262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr3:55318749-55318931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):167, 63

               
               
               Conread position:8-192
               
               
               Cow position:chr3:11229219-11229397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-197
               
               
               Cow position:chr3:40145616-40145426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):186, 0

               
               
               Conread position:8-208
               
               
               Cow position:chr3:18479147-18479343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:8-214
               
               
               Cow position:chr3:83672004-83671801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-216
               
               
               Cow position:chr3:39812211-39811994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):61, 155

               
               
               Conread position:8-255
               
               
               Cow position:chr3:54905755-54905523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):197, 39

               
               
               Conread position:9-135
               
               
               Cow position:chr3:61171216-61171344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:9-155
               
               
               Cow position:chr3:57704480-57704341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:9-158
               
               
               Cow position:chr3:59699503-59699648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:9-159
               
               
               Cow position:chr3:64909947-64910095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:9-169
               
               
               Cow position:chr3:81616302-81616460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):148, 0

               
               
               Conread position:9-174
               
               
               Cow position:chr3:30940958-30940793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):60, 127

               
               
               Conread position:9-174
               
               
               Cow position:chr3:35582989-35582827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:9-179
               
               
               Cow position:chr3:16752106-16752277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):51, 140

               
               
               Conread position:9-180
               
               
               Cow position:chr3:68303466-68303296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):69, 149

               
               
               Conread position:9-181
               
               
               Cow position:chr3:63860462-63860632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:9-182
               
               
               Cow position:chr3:58432299-58432467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:9-183
               
               
               Cow position:chr3:6299606-6299434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:9-183
               
               
               Cow position:chr3:35055828-35055999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):161, 68

               
               
               Conread position:9-184
               
               
               Cow position:chr3:18059852-18059678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):149, 55

               
               
               Conread position:9-184
               
               
               Cow position:chr3:77365139-77365314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:9-191
               
               
               Cow position:chr3:74234333-74234155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:10-168
               
               
               Cow position:chr3:58540370-58540529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):53, 127

               
               
               Conread position:10-178
               
               
               Cow position:chr3:84137667-84137833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:10-183
               
               
               Cow position:chr3:44102114-44101945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):141, 52

               
               
               Conread position:10-183
               
               
               Cow position:chr3:66631196-66631375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):49, 20

               
               
               Conread position:10-184
               
               
               Cow position:chr3:30357656-30357498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:10-184
               
               
               Cow position:chr3:54551563-54551736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:10-184
               
               
               Cow position:chr3:59474267-59474098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:10-184
               
               
               Cow position:chr3:81087489-81087660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):97, 140

               
               
               Conread position:10-191
               
               
               Cow position:chr3:15159181-15159000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:10-191
               
               
               Cow position:chr3:49482564-49482747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:11-113
               
               
               Cow position:chr3:70632293-70632191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:85
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-147
               
               
               Cow position:chr3:70761977-70762110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-148
               
               
               Cow position:chr3:2538383-2538252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):71, 47

               
               
               Conread position:11-153
               
               
               Cow position:chr3:47417425-47417565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:11-154
               
               
               Cow position:chr3:4518038-4518177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-154
               
               
               Cow position:chr3:23753630-23753497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-154
               
               
               Cow position:chr3:52845701-52845562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:11-155
               
               
               Cow position:chr3:53150479-53150336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):43, 58

               
               
               Conread position:11-156
               
               
               Cow position:chr3:67942387-67942532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-158
               
               
               Cow position:chr3:53428772-53428915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-161
               
               
               Cow position:chr3:25060474-25060326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):58, 9

               
               
               Conread position:11-161
               
               
               Cow position:chr3:58614610-58614455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:11-161
               
               
               Cow position:chr3:73162250-73162389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:11-161
               
               
               Cow position:chr3:76300920-76300769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:11-167
               
               
               Cow position:chr3:59597319-59597171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-167
               
               
               Cow position:chr3:62186304-62186144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:11-167
               
               
               Cow position:chr3:80910743-80910588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:11-168
               
               
               Cow position:chr3:37641472-37641319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:11-170
               
               
               Cow position:chr3:60371130-60370972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:11-171
               
               
               Cow position:chr3:54350288-54350452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:11-172
               
               
               Cow position:chr3:71474261-71474416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:11-173
               
               
               Cow position:chr3:17221987-17222155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:11-173
               
               
               Cow position:chr3:59588790-59588626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):55, 158

               
               
               Conread position:11-175
               
               
               Cow position:chr3:20066001-20066169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:11-178
               
               
               Cow position:chr3:28884016-28884179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-178
               
               
               Cow position:chr3:83705389-83705555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:11-179
               
               
               Cow position:chr3:9025937-9026105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):81, 117

               
               
               Conread position:11-181
               
               
               Cow position:chr3:21959811-21959640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):49, 23

               
               
               Conread position:11-181
               
               
               Cow position:chr3:59947814-59947644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-181
               
               
               Cow position:chr3:61023874-61024044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:141
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-181
               
               
               Cow position:chr3:72391234-72391061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:11-181
               
               
               Cow position:chr3:75050475-75050638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr3:26970959-26970791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr3:34871714-34871545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr3:48459183-48459351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr3:54946270-54946109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr3:73589620-73589793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr3:3556694-3556522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr3:11987474-11987306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr3:15953936-15954108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr3:18143967-18144141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr3:22888868-22889040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):67, 27

               
               
               Conread position:11-183
               
               
               Cow position:chr3:29596541-29596367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):39, 8

               
               
               Conread position:11-183
               
               
               Cow position:chr3:45183675-45183856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr3:47198979-47199150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr3:48468322-48468150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr3:56943783-56943949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr3:57577842-57577674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr3:72342394-72342222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr3:84250403-84250563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr3:3032555-3032385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):74, 44

               
               
               Conread position:11-184
               
               
               Cow position:chr3:14547145-14546978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr3:22221472-22221304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr3:53875616-53875789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr3:54100567-54100750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr3:56704164-56704345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr3:65969320-65969143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr3:79272430-79272597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr3:85118515-85118347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:11-188
               
               
               Cow position:chr3:7860104-7860280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):173, 0

               
               
               Conread position:11-191
               
               
               Cow position:chr3:19793444-19793621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:11-191
               
               
               Cow position:chr3:28902616-28902790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-191
               
               
               Cow position:chr3:30026516-30026336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-191
               
               
               Cow position:chr3:41863768-41863593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):171, 45

               
               
               Conread position:11-191
               
               
               Cow position:chr3:65019711-65019896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):44, 85

               
               
               Conread position:11-191
               
               
               Cow position:chr3:83215415-83215231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:11-194
               
               
               Cow position:chr3:35802790-35802979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):61, 40

               
               
               Conread position:11-197
               
               
               Cow position:chr3:29234531-29234719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):54, 145

               
               
               Conread position:11-209
               
               
               Cow position:chr3:23640485-23640293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):164, 44

               
               
               Conread position:12-139
               
               
               Cow position:chr3:18764250-18764122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:12-141
               
               
               Cow position:chr3:16107227-16107348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:12-141
               
               
               Cow position:chr3:42484075-42483945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):105, 11

               
               
               Conread position:12-145
               
               
               Cow position:chr3:3011293-3011161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:102
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):63, 25

               
               
               Conread position:12-148
               
               
               Cow position:chr3:8460186-8460053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):58, 84

               
               
               Conread position:12-149
               
               
               Cow position:chr3:68624364-68624228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:12-161
               
               
               Cow position:chr3:63069216-63069367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:12-163
               
               
               Cow position:chr3:2392824-2392972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):113, 43

               
               
               Conread position:12-164
               
               
               Cow position:chr3:3262678-3262838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:12-170
               
               
               Cow position:chr3:6579628-6579478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-170
               
               
               Cow position:chr3:20043446-20043604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-171
               
               
               Cow position:chr3:4268429-4268587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:12-171
               
               
               Cow position:chr3:15388367-15388208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-172
               
               
               Cow position:chr3:23105220-23105374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:12-173
               
               
               Cow position:chr3:23168920-23169077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:12-173
               
               
               Cow position:chr3:25702186-25702355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:12-173
               
               
               Cow position:chr3:65058843-65058685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:12-173
               
               
               Cow position:chr3:83812423-83812259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):44, 88

               
               
               Conread position:12-175
               
               
               Cow position:chr3:59317845-59317687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-176
               
               
               Cow position:chr3:8523009-8523166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:12-176
               
               
               Cow position:chr3:25735758-25735922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-177
               
               
               Cow position:chr3:22734113-22734283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):131, 63

               
               
               Conread position:12-177
               
               
               Cow position:chr3:62046816-62046647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:12-179
               
               
               Cow position:chr3:10958096-10958259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:12-179
               
               
               Cow position:chr3:75853187-75853347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-179
               
               
               Cow position:chr3:82366274-82366108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):104, 52

               
               
               Conread position:12-181
               
               
               Cow position:chr3:12178206-12178034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):51, 127

               
               
               Conread position:12-181
               
               
               Cow position:chr3:14553017-14552854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:12-181
               
               
               Cow position:chr3:54067942-54067774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):160, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr3:9120990-9120823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr3:21694372-21694203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):66, 26

               
               
               Conread position:12-182
               
               
               Cow position:chr3:45882044-45881876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr3:73820217-73820391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr3:74134852-74134682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):38, 26

               
               
               Conread position:12-182
               
               
               Cow position:chr3:75158503-75158339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr3:210467-210296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr3:1889961-1890132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr3:3584860-3584690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr3:14465567-14465729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr3:14517936-14518102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):86, 34

               
               
               Conread position:12-183
               
               
               Cow position:chr3:20674731-20674897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):58, 35

               
               
               Conread position:12-183
               
               
               Cow position:chr3:29891261-29891432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr3:31309206-31309377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr3:36375393-36375559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr3:49679279-49679109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr3:53910254-53910086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr3:77188585-77188415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr3:3401687-3401523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr3:3656663-3656490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr3:29946534-29946363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr3:30180228-30180062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr3:36914215-36914026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr3:48483326-48483154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr3:51233959-51234118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr3:76024649-76024483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):158, 43

               
               
               Conread position:12-184
               
               
               Cow position:chr3:77582251-77582085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):70, 56

               
               
               Conread position:12-185
               
               
               Cow position:chr3:56948948-56949113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-191
               
               
               Cow position:chr3:5044665-5044844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-191
               
               
               Cow position:chr3:19006287-19006110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:12-191
               
               
               Cow position:chr3:31055865-31056044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-191
               
               
               Cow position:chr3:46559571-46559746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:12-191
               
               
               Cow position:chr3:51150277-51150097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:12-191
               
               
               Cow position:chr3:74644705-74644526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):167, 158

               
               
               Conread position:13-174
               
               
               Cow position:chr3:58010685-58010842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:13-179
               
               
               Cow position:chr3:60264577-60264735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:13-182
               
               
               Cow position:chr3:74127356-74127525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):52, 133

               
               
               Conread position:13-184
               
               
               Cow position:chr3:37041565-37041395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:13-184
               
               
               Cow position:chr3:38828895-38828735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:14-130
               
               
               Cow position:chr3:73410426-73410316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:14-150
               
               
               Cow position:chr3:26565565-26565715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:14-156
               
               
               Cow position:chr3:37851642-37851500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):123, 30

               
               
               Conread position:14-160
               
               
               Cow position:chr3:3985459-3985322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:14-164
               
               
               Cow position:chr3:4086705-4086868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:14-168
               
               
               Cow position:chr3:42589245-42589089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:14-177
               
               
               Cow position:chr3:5305951-5305781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:14-181
               
               
               Cow position:chr3:24468239-24468402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:14-181
               
               
               Cow position:chr3:77171461-77171294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-183
               
               
               Cow position:chr3:39996748-39996914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):132, 39

               
               
               Conread position:14-183
               
               
               Cow position:chr3:54373714-54373883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-183
               
               
               Cow position:chr3:81666942-81666776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:14-184
               
               
               Cow position:chr3:59000620-59000776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:14-184
               
               
               Cow position:chr3:84807181-84807352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:14-191
               
               
               Cow position:chr3:48241753-48241587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:16-181
               
               
               Cow position:chr3:38283421-38283585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:18-150
               
               
               Cow position:chr3:35079366-35079498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:18-181
               
               
               Cow position:chr3:59271970-59271812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:18-182
               
               
               Cow position:chr3:4271508-4271350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:18-183
               
               
               Cow position:chr3:47316239-47316401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):74, 56

               
               
               Conread position:18-183
               
               
               Cow position:chr3:64010671-64010835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):57, 86

               
               
               Conread position:18-184
               
               
               Cow position:chr3:18326687-18326848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):103, 140

               
               
               Conread position:18-184
               
               
               Cow position:chr3:52457052-52456894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:18-184
               
               
               Cow position:chr3:55124142-55124304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:18-191
               
               
               Cow position:chr3:18831557-18831390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):113, 36

               
               
               Conread position:18-207
               
               
               Cow position:chr3:20911268-20911460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):160, 0

               
               
               Conread position:18-214
               
               
               Cow position:chr3:81065415-81065230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):161, 33

               
               
               Conread position:19-149
               
               
               Cow position:chr3:31896818-31896946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:99
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-149
               
               
               Cow position:chr3:40343891-40344019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:99
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-149
               
               
               Cow position:chr3:44622640-44622773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:103
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):36, 81

               
               
               Conread position:19-160
               
               
               Cow position:chr3:3292603-3292466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-164
               
               
               Cow position:chr3:31352737-31352879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:19-177
               
               
               Cow position:chr3:25037856-25038009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-179
               
               
               Cow position:chr3:48477896-48478050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):12, 41

               
               
               Conread position:19-181
               
               
               Cow position:chr3:7581576-7581738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):41, 91

               
               
               Conread position:19-183
               
               
               Cow position:chr3:15751576-15751736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:19-184
               
               
               Cow position:chr3:14601565-14601735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):121, 36

               
               
               Conread position:19-184
               
               
               Cow position:chr3:77271140-77271301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:19-184
               
               
               Cow position:chr3:80023171-80023333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:19-191
               
               
               Cow position:chr3:15237552-15237722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):44, 102

               
               
               Conread position:19-191
               
               
               Cow position:chr3:24596286-24596454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:19-191
               
               
               Cow position:chr3:26982196-26982027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:19-191
               
               
               Cow position:chr3:38783746-38783575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:19-197
               
               
               Cow position:chr3:61323472-61323288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:20-149
               
               
               Cow position:chr3:19435254-19435127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:20-149
               
               
               Cow position:chr3:49732913-49733042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):49, 85

               
               
               Conread position:20-170
               
               
               Cow position:chr3:49741158-49741309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):25, 123

               
               
               Conread position:20-183
               
               
               Cow position:chr3:6690140-6689977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:20-184
               
               
               Cow position:chr3:21642133-21641964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):39, 136

               
               
               Conread position:20-191
               
               
               Cow position:chr3:2484138-2483973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:21-181
               
               
               Cow position:chr3:70402774-70402623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:21-182
               
               
               Cow position:chr3:8061260-8061107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:21-184
               
               
               Cow position:chr3:21014817-21014982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:21-191
               
               
               Cow position:chr3:31207015-31206845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:21-193
               
               
               Cow position:chr3:69650753-69650922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:22-215
               
               
               Cow position:chr3:91219-91021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):33, 180

               
               
               Conread position:25-149
               
               
               Cow position:chr3:205307-205429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:97
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:26-147
               
               
               Cow position:chr3:47284942-47284826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:27-179
               
               
               Cow position:chr3:82123420-82123566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:27-182
               
               
               Cow position:chr3:80565094-80564944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:29-160
               
               
               Cow position:chr3:75045742-75045878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:29-183
               
               
               Cow position:chr3:28898091-28898246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:29-184
               
               
               Cow position:chr3:12711783-12711939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:29-187
               
               
               Cow position:chr3:73709175-73709020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:30-191
               
               
               Cow position:chr3:27727699-27727861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):22, 132

               
               
               Conread position:31-167
               
               
               Cow position:chr3:3163979-3164117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):46, 59

               
               
               Conread position:31-184
               
               
               Cow position:chr3:36160066-36160217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:33-184
               
               
               Cow position:chr3:57877691-57877542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:35-180
               
               
               Cow position:chr3:41366585-41366730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:36-182
               
               
               Cow position:chr3:79339460-79339601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:37-159
               
               
               Cow position:chr3:18067255-18067133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:44-183
               
               
               Cow position:chr3:5366884-5366746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:44-184
               
               
               Cow position:chr3:39247906-39248048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:45-183
               
               
               Cow position:chr3:49790695-49790835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:47-169
               
               
               Cow position:chr3:2179231-2179110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:47-191
               
               
               Cow position:chr3:20515705-20515849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-173
               
               
               Cow position:chr3:35285159-35285030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:48-182
               
               
               Cow position:chr3:55984210-55984077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr3:17934829-17934962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr3:52863071-52863208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):50, 44

               
               
               Conread position:48-184
               
               
               Cow position:chr3:64373044-64373180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr3:74900533-74900664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr3:84175712-84175847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:48-191
               
               
               Cow position:chr3:10104152-10104010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:48-191
               
               
               Cow position:chr3:70402010-70401866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):22, 99

               
               
               Conread position:48-192
               
               
               Cow position:chr3:61467081-61467222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:49-178
               
               
               Cow position:chr3:61133749-61133621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:49-179
               
               
               Cow position:chr3:61279019-61278890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:49-182
               
               
               Cow position:chr3:78201718-78201588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:49-184
               
               
               Cow position:chr3:55712551-55712416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:50-183
               
               
               Cow position:chr3:22510135-22510004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:51-161
               
               
               Cow position:chr3:29413170-29413059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:91
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:51-176
               
               
               Cow position:chr3:53192183-53192306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:51-178
               
               
               Cow position:chr3:75772903-75772781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:106
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):62, 12

               
               
               Conread position:51-183
               
               
               Cow position:chr3:84239094-84239226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:51-191
               
               
               Cow position:chr3:67959809-67959947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):21, 109

               
               
               Conread position:55-156
               
               
               Cow position:chr3:57067714-57067612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:85
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:55-184
               
               
               Cow position:chr3:32457298-32457170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:99
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:55-191
               
               
               Cow position:chr3:57624569-57624433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:55-201
               
               
               Cow position:chr3:38691301-38691448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:56-156
               
               
               Cow position:chr3:53256631-53256532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:84
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:56-167
               
               
               Cow position:chr3:52634211-52634101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:91
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:56-181
               
               
               Cow position:chr3:59621544-59621669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-182
               
               
               Cow position:chr3:46901302-46901177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):18, 32

               
               
               Conread position:56-184
               
               
               Cow position:chr3:24935468-24935341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr3:59630409-59630533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr3:59883964-59884093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr3:71423451-71423575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr3:80053440-80053565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:57-179
               
               
               Cow position:chr3:21997685-21997807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:57-181
               
               
               Cow position:chr3:1534001-1534126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:57-184
               
               
               Cow position:chr3:81470993-81471120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:57-191
               
               
               Cow position:chr3:33693922-33693788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:58-178
               
               
               Cow position:chr3:53113277-53113157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:59-184
               
               
               Cow position:chr3:22092250-22092125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:96
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:60-167
               
               
               Cow position:chr3:4167176-4167282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:88
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:60-184
               
               
               Cow position:chr3:5365777-5365653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:105
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:60-191
               
               
               Cow position:chr3:58767363-58767232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:101
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-167
               
               
               Cow position:chr3:39157552-39157655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-179
               
               
               Cow position:chr3:4050289-4050174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-179
               
               
               Cow position:chr3:23667716-23667601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):94, 23

               
               
               Conread position:64-184
               
               
               Cow position:chr3:11705347-11705227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-184
               
               
               Cow position:chr3:57760594-57760474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-201
               
               
               Cow position:chr3:24372017-24371881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:103
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:65-153
               
               
               Cow position:chr3:45308002-45307914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:89
               
               
               Alignm identity:79
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:65-184
               
               
               Cow position:chr3:4258141-4258259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:93
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:65-191
               
               
               Cow position:chr3:39873600-39873724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):12, 33

               
               
               Conread position:66-155
               
               
               Cow position:chr3:85044318-85044407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:90
               
               
               Alignm identity:77
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:66-184
               
               
               Cow position:chr3:58940219-58940102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:67-177
               
               
               Cow position:chr3:49650481-49650371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:92
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:67-183
               
               
               Cow position:chr3:68059407-68059292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:93
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:67-184
               
               
               Cow position:chr3:40199202-40199319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:67-184
               
               
               Cow position:chr3:72503803-72503920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:92
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:69-184
               
               
               Cow position:chr3:15228732-15228847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:70-198
               
               
               Cow position:chr3:30222281-30222152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:71-183
               
               
               Cow position:chr3:42967291-42967401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:91
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:71-183
               
               
               Cow position:chr3:83928335-83928223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:72-181
               
               
               Cow position:chr3:20038175-20038066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:87
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:72-183
               
               
               Cow position:chr3:49383037-49382926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:88
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:72-184
               
               
               Cow position:chr3:11292160-11292272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:99
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:74-177
               
               
               Cow position:chr3:34669647-34669750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:74-184
               
               
               Cow position:chr3:38347276-38347169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:92
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:82-184
               
               
               Cow position:chr3:81277390-81277492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:86
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-164
               
               
               Cow position:chr4:34983331-34983487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):161, 54

               
               
               Conread position:1-183
               
               
               Cow position:chr4:25197319-25197501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):82, 8

               
               
               Conread position:2-176
               
               
               Cow position:chr4:38999597-38999425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):9, 75

               
               
               Conread position:2-182
               
               
               Cow position:chr4:53126278-53126109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):18, 62

               
               
               Conread position:3-125
               
               
               Cow position:chr4:29116601-29116727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:3-145
               
               
               Cow position:chr4:59557613-59557471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):138, 73

               
               
               Conread position:3-147
               
               
               Cow position:chr4:45801688-45801545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:3-148
               
               
               Cow position:chr4:34562553-34562410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):6, 60

               
               
               Conread position:3-155
               
               
               Cow position:chr4:11154443-11154290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:3-175
               
               
               Cow position:chr4:2680460-2680288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-176
               
               
               Cow position:chr4:45773636-45773464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):166, 0

               
               
               Conread position:3-177
               
               
               Cow position:chr4:13668448-13668622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-178
               
               
               Cow position:chr4:570958-570791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-178
               
               
               Cow position:chr4:29237870-29238045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-180
               
               
               Cow position:chr4:45685623-45685454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:3-182
               
               
               Cow position:chr4:18974596-18974418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:3-182
               
               
               Cow position:chr4:26644917-26644737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:3-182
               
               
               Cow position:chr4:55270596-55270774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr4:1645913-1646098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):64, 96

               
               
               Conread position:3-183
               
               
               Cow position:chr4:4647572-4647393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr4:6093894-6094072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr4:7698435-7698260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr4:10895658-10895839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):153, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr4:12245381-12245206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr4:13131651-13131468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):101, 35

               
               
               Conread position:3-183
               
               
               Cow position:chr4:13326781-13326957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):89, 39

               
               
               Conread position:3-183
               
               
               Cow position:chr4:15905276-15905094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr4:19199113-19199293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr4:19292883-19292715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr4:26323914-26323734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr4:32458686-32458867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):165, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr4:37985899-37985726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr4:40995904-40995725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):147, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr4:45213016-45213196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):139, 34

               
               
               Conread position:3-183
               
               
               Cow position:chr4:47262707-47262528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr4:54880904-54881081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):36, 63

               
               
               Conread position:3-183
               
               
               Cow position:chr4:56591212-56591036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):29, 68

               
               
               Conread position:3-183
               
               
               Cow position:chr4:63916467-63916648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:3-184
               
               
               Cow position:chr4:13919149-13918974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:3-184
               
               
               Cow position:chr4:27511718-27511537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):74, 91

               
               
               Conread position:3-184
               
               
               Cow position:chr4:42673346-42673169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:3-188
               
               
               Cow position:chr4:60761811-60761634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:3-189
               
               
               Cow position:chr4:58045462-58045645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):171, 139

               
               
               Conread position:3-190
               
               
               Cow position:chr4:16870037-16870223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):181, 0

               
               
               Conread position:3-191
               
               
               Cow position:chr4:28841589-28841402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:3-193
               
               
               Cow position:chr4:50368582-50368393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:5-156
               
               
               Cow position:chr4:19580580-19580734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):61, 86

               
               
               Conread position:5-167
               
               
               Cow position:chr4:49158624-49158784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:5-177
               
               
               Cow position:chr4:18095493-18095674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):45, 11

               
               
               Conread position:5-181
               
               
               Cow position:chr4:13590255-13590079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):87, 50

               
               
               Conread position:5-184
               
               
               Cow position:chr4:37732311-37732490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:5-231
               
               
               Cow position:chr4:26671674-26671902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):65, 122

               
               
               Conread position:6-183
               
               
               Cow position:chr4:12901388-12901564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:7-131
               
               
               Cow position:chr4:63198199-63198326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:7-149
               
               
               Cow position:chr4:60370360-60370501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:7-180
               
               
               Cow position:chr4:19709109-19708932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):163, 0

               
               
               Conread position:7-182
               
               
               Cow position:chr4:4084291-4084455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:7-182
               
               
               Cow position:chr4:60363518-60363345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):63, 48

               
               
               Conread position:7-183
               
               
               Cow position:chr4:23450924-23451101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):159, 0

               
               
               Conread position:7-184
               
               
               Cow position:chr4:12127473-12127646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):65, 45

               
               
               Conread position:7-184
               
               
               Cow position:chr4:23444872-23445053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):56, 106

               
               
               Conread position:7-184
               
               
               Cow position:chr4:27699206-27699025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):46, 176

               
               
               Conread position:8-119
               
               
               Cow position:chr4:9571271-9571162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:91
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:8-124
               
               
               Cow position:chr4:34722536-34722420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-140
               
               
               Cow position:chr4:42608904-42608776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-145
               
               
               Cow position:chr4:17076112-17076247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):61, 71

               
               
               Conread position:8-145
               
               
               Cow position:chr4:61451383-61451245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):69, 49

               
               
               Conread position:8-146
               
               
               Cow position:chr4:4320828-4320960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-147
               
               
               Cow position:chr4:2770236-2770103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-147
               
               
               Cow position:chr4:66412348-66412216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr4:27691505-27691644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr4:28660381-28660522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr4:28854110-28854246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-149
               
               
               Cow position:chr4:19420590-19420729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:8-149
               
               
               Cow position:chr4:19584879-19584731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:8-149
               
               
               Cow position:chr4:23271449-23271310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:8-149
               
               
               Cow position:chr4:23943478-23943617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):26, 50

               
               
               Conread position:8-149
               
               
               Cow position:chr4:26659465-26659327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):113, 47

               
               
               Conread position:8-149
               
               
               Cow position:chr4:68590934-68590799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:8-153
               
               
               Cow position:chr4:33389027-33388880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:8-154
               
               
               Cow position:chr4:8182468-8182614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):11, 59

               
               
               Conread position:8-154
               
               
               Cow position:chr4:47417581-47417435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-154
               
               
               Cow position:chr4:48693760-48693621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:8-155
               
               
               Cow position:chr4:53380856-53380709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-156
               
               
               Cow position:chr4:2628695-2628549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-157
               
               
               Cow position:chr4:19542315-19542152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:8-157
               
               
               Cow position:chr4:30935194-30935344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):115, 129

               
               
               Conread position:8-157
               
               
               Cow position:chr4:54315057-54315203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:8-158
               
               
               Cow position:chr4:44681095-44681233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:8-164
               
               
               Cow position:chr4:52823237-52823389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-165
               
               
               Cow position:chr4:45840557-45840410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:8-167
               
               
               Cow position:chr4:7326761-7326915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:8-167
               
               
               Cow position:chr4:8675532-8675381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):138, 47

               
               
               Conread position:8-167
               
               
               Cow position:chr4:34919109-34919261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):148, 55

               
               
               Conread position:8-168
               
               
               Cow position:chr4:14131590-14131434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):125, 47

               
               
               Conread position:8-168
               
               
               Cow position:chr4:68807940-68808100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-169
               
               
               Cow position:chr4:5250356-5250195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-170
               
               
               Cow position:chr4:11186132-11185970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-171
               
               
               Cow position:chr4:25802859-25802696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-171
               
               
               Cow position:chr4:33100642-33100804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:8-171
               
               
               Cow position:chr4:36709190-36709026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:8-171
               
               
               Cow position:chr4:47125673-47125834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):147, 0

               
               
               Conread position:8-171
               
               
               Cow position:chr4:53830648-53830485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):64, 128

               
               
               Conread position:8-172
               
               
               Cow position:chr4:21161270-21161110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-172
               
               
               Cow position:chr4:30845550-30845376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:8-172
               
               
               Cow position:chr4:39092049-39091895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-173
               
               
               Cow position:chr4:19123038-19122876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):8, 56

               
               
               Conread position:8-173
               
               
               Cow position:chr4:30974499-30974340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):40, 82

               
               
               Conread position:8-173
               
               
               Cow position:chr4:42044809-42044971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-173
               
               
               Cow position:chr4:46435499-46435328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-175
               
               
               Cow position:chr4:29247032-29247199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-175
               
               
               Cow position:chr4:46656299-46656131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:8-176
               
               
               Cow position:chr4:62472241-62472080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:8-177
               
               
               Cow position:chr4:66547598-66547768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:8-178
               
               
               Cow position:chr4:34722719-34722888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:8-178
               
               
               Cow position:chr4:37915173-37915336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr4:9434751-9434572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):58, 159

               
               
               Conread position:8-179
               
               
               Cow position:chr4:30769197-30769033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr4:35291188-35291018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):20, 45

               
               
               Conread position:8-179
               
               
               Cow position:chr4:38209810-38209977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr4:58018508-58018340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):129, 47

               
               
               Conread position:8-180
               
               
               Cow position:chr4:53347816-53347973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr4:5790811-5790642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):149, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr4:6072886-6073054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr4:19543108-19542931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr4:22101096-22101269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr4:25354693-25354521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr4:31177987-31177820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr4:36290787-36290620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr4:43909930-43909761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):148, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr4:45800045-45799868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):45, 90

               
               
               Conread position:8-181
               
               
               Cow position:chr4:53819519-53819690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr4:54937259-54937075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr4:2713692-2713863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr4:10732385-10732218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr4:12474016-12473846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):69, 120

               
               
               Conread position:8-182
               
               
               Cow position:chr4:12676960-12676798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr4:13284549-13284379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):69, 120

               
               
               Conread position:8-182
               
               
               Cow position:chr4:17052420-17052598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr4:17851092-17851258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr4:19431525-19431701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):57, 30

               
               
               Conread position:8-182
               
               
               Cow position:chr4:23846889-23847054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr4:34383173-34383346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):146, 135

               
               
               Conread position:8-182
               
               
               Cow position:chr4:41907417-41907587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):147, 47

               
               
               Conread position:8-182
               
               
               Cow position:chr4:42373990-42374162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):72, 48

               
               
               Conread position:8-182
               
               
               Cow position:chr4:42423640-42423810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr4:54191267-54191085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):46, 27

               
               
               Conread position:8-182
               
               
               Cow position:chr4:54871858-54872032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):71, 43

               
               
               Conread position:8-182
               
               
               Cow position:chr4:61999033-61999207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):134, 45

               
               
               Conread position:8-182
               
               
               Cow position:chr4:69290576-69290748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr4:617212-617384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):62, 46

               
               
               Conread position:8-183
               
               
               Cow position:chr4:1985816-1985641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):65, 47

               
               
               Conread position:8-183
               
               
               Cow position:chr4:2681497-2681327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr4:4827298-4827119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):51, 31

               
               
               Conread position:8-183
               
               
               Cow position:chr4:7964482-7964654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr4:8770259-8770096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr4:9444517-9444693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr4:16091152-16091322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr4:19485470-19485291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):108, 42

               
               
               Conread position:8-183
               
               
               Cow position:chr4:22073152-22073326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):43, 158

               
               
               Conread position:8-183
               
               
               Cow position:chr4:22138051-22138228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr4:22713330-22713499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):137, 30

               
               
               Conread position:8-183
               
               
               Cow position:chr4:23059687-23059862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):64, 52

               
               
               Conread position:8-183
               
               
               Cow position:chr4:28836703-28836530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr4:29805204-29805376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):42, 149

               
               
               Conread position:8-183
               
               
               Cow position:chr4:31505853-31506030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr4:34310297-34310459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr4:38822150-38822322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr4:43740696-43740528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr4:45250138-45249964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr4:45852785-45852949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr4:45964055-45963877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr4:46883502-46883677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr4:47230831-47231004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr4:47283846-47284019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr4:47305246-47305071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr4:48104400-48104575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):42, 61

               
               
               Conread position:8-183
               
               
               Cow position:chr4:54171790-54171620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr4:56498705-56498882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):47, 114

               
               
               Conread position:8-183
               
               
               Cow position:chr4:56746159-56745985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):72, 165

               
               
               Conread position:8-183
               
               
               Cow position:chr4:59785485-59785316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr4:63078391-63078216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr4:2774888-2774706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):60, 44

               
               
               Conread position:8-184
               
               
               Cow position:chr4:14020664-14020493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr4:14500079-14500251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):161, 53

               
               
               Conread position:8-184
               
               
               Cow position:chr4:16814556-16814375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):40, 29

               
               
               Conread position:8-184
               
               
               Cow position:chr4:19102711-19102889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr4:19315842-19316012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):83, 53

               
               
               Conread position:8-184
               
               
               Cow position:chr4:19539066-19539244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr4:19700272-19700091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):45, 150

               
               
               Conread position:8-184
               
               
               Cow position:chr4:20147350-20147176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr4:22546678-22546848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr4:24371691-24371868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):51, 62

               
               
               Conread position:8-184
               
               
               Cow position:chr4:29384076-29384239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr4:31004247-31004416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr4:38358658-38358828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr4:40414463-40414635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):72, 46

               
               
               Conread position:8-184
               
               
               Cow position:chr4:41370776-41370948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):94, 43

               
               
               Conread position:8-184
               
               
               Cow position:chr4:42347652-42347477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr4:44613170-44612997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):150, 77

               
               
               Conread position:8-184
               
               
               Cow position:chr4:45909795-45909984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):43, 93

               
               
               Conread position:8-184
               
               
               Cow position:chr4:46136914-46136743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):35, 40

               
               
               Conread position:8-184
               
               
               Cow position:chr4:50687700-50687868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr4:52780011-52779843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):97, 20

               
               
               Conread position:8-184
               
               
               Cow position:chr4:58248568-58248398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr4:61313034-61313220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr4:63349310-63349492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr4:67393260-67393084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:142
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-187
               
               
               Cow position:chr4:37675795-37675608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):40, 161

               
               
               Conread position:8-190
               
               
               Cow position:chr4:61887805-61887622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):150, 142

               
               
               Conread position:8-191
               
               
               Cow position:chr4:19407826-19408011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):47, 26

               
               
               Conread position:8-191
               
               
               Cow position:chr4:34631072-34630884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr4:38944093-38944270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr4:45775165-45775352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr4:60527346-60527166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:8-192
               
               
               Cow position:chr4:50837868-50837688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-193
               
               
               Cow position:chr4:656643-656824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):9, 46

               
               
               Conread position:8-201
               
               
               Cow position:chr4:29291671-29291493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-201
               
               
               Cow position:chr4:35638740-35638926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:8-201
               
               
               Cow position:chr4:39010219-39010025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):51, 77

               
               
               Conread position:8-207
               
               
               Cow position:chr4:36876691-36876889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):27, 61

               
               
               Conread position:8-208
               
               
               Cow position:chr4:66168173-66168364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):143, 43

               
               
               Conread position:8-212
               
               
               Cow position:chr4:38949363-38949571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):43, 170

               
               
               Conread position:9-150
               
               
               Cow position:chr4:59105521-59105656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:9-156
               
               
               Cow position:chr4:19333550-19333407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:9-161
               
               
               Cow position:chr4:34210200-34210049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:9-176
               
               
               Cow position:chr4:56239697-56239859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):69, 45

               
               
               Conread position:9-181
               
               
               Cow position:chr4:348263-348429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:9-182
               
               
               Cow position:chr4:34641559-34641731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:9-183
               
               
               Cow position:chr4:26959802-26959975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:9-192
               
               
               Cow position:chr4:43579249-43579427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:10-154
               
               
               Cow position:chr4:60332064-60332214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:10-156
               
               
               Cow position:chr4:8352400-8352544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:10-161
               
               
               Cow position:chr4:36058210-36058057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:10-178
               
               
               Cow position:chr4:19500925-19501093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):53, 20

               
               
               Conread position:10-181
               
               
               Cow position:chr4:30648010-30647851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):152, 39

               
               
               Conread position:10-184
               
               
               Cow position:chr4:7704153-7704332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):54, 27

               
               
               Conread position:10-184
               
               
               Cow position:chr4:48127738-48127558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):45, 115

               
               
               Conread position:10-185
               
               
               Cow position:chr4:40918466-40918288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:11-147
               
               
               Cow position:chr4:51617834-51617969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:11-148
               
               
               Cow position:chr4:501508-501654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:11-148
               
               
               Cow position:chr4:4516707-4516842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):59, 78

               
               
               Conread position:11-148
               
               
               Cow position:chr4:39458821-39458681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):44, 27

               
               
               Conread position:11-148
               
               
               Cow position:chr4:56756020-56755883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:103
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-149
               
               
               Cow position:chr4:11901344-11901482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-155
               
               
               Cow position:chr4:59001976-59002117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:11-158
               
               
               Cow position:chr4:30944116-30943973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:11-164
               
               
               Cow position:chr4:68764681-68764530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):38, 68

               
               
               Conread position:11-174
               
               
               Cow position:chr4:20164536-20164690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:11-174
               
               
               Cow position:chr4:30691164-30691007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:11-175
               
               
               Cow position:chr4:10915670-10915834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):59, 19

               
               
               Conread position:11-175
               
               
               Cow position:chr4:45483966-45483800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):55, 75

               
               
               Conread position:11-176
               
               
               Cow position:chr4:19435412-19435256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:11-177
               
               
               Cow position:chr4:44183958-44184115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:11-179
               
               
               Cow position:chr4:26830880-26830705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):52, 120

               
               
               Conread position:11-181
               
               
               Cow position:chr4:7043655-7043823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr4:1236700-1236878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):46, 84

               
               
               Conread position:11-182
               
               
               Cow position:chr4:19496662-19496489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr4:44854125-44854296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr4:48138106-48137943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr4:48381552-48381376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):45, 147

               
               
               Conread position:11-182
               
               
               Cow position:chr4:54390852-54391023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):72, 83

               
               
               Conread position:11-182
               
               
               Cow position:chr4:56410507-56410340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):61, 44

               
               
               Conread position:11-183
               
               
               Cow position:chr4:11187614-11187445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr4:14512390-14512564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr4:16513365-16513532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):143, 44

               
               
               Conread position:11-183
               
               
               Cow position:chr4:19573451-19573278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr4:32561994-32561823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr4:37691146-37691318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):52, 44

               
               
               Conread position:11-183
               
               
               Cow position:chr4:46061110-46060936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):49, 86

               
               
               Conread position:11-183
               
               
               Cow position:chr4:51193138-51192961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr4:54789805-54789633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr4:61188704-61188875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr4:12004380-12004211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr4:13222018-13222192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):31, 152

               
               
               Conread position:11-184
               
               
               Cow position:chr4:19430526-19430358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):21, 41

               
               
               Conread position:11-184
               
               
               Cow position:chr4:20124806-20124975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):120, 44

               
               
               Conread position:11-184
               
               
               Cow position:chr4:32693950-32693780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):145, 44

               
               
               Conread position:11-184
               
               
               Cow position:chr4:38946381-38946213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr4:44772877-44773050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:144
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr4:48322199-48322026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):39, 55

               
               
               Conread position:11-184
               
               
               Cow position:chr4:60955484-60955324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr4:65265126-65265313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:11-191
               
               
               Cow position:chr4:15236786-15236622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:11-191
               
               
               Cow position:chr4:37313333-37313155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):59, 142

               
               
               Conread position:11-191
               
               
               Cow position:chr4:51986412-51986593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:11-198
               
               
               Cow position:chr4:22482481-22482301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):140, 42

               
               
               Conread position:11-200
               
               
               Cow position:chr4:10999545-10999738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:11-201
               
               
               Cow position:chr4:61608805-61608988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:154
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:12-139
               
               
               Cow position:chr4:53050156-53050030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:12-141
               
               
               Cow position:chr4:49808680-49808553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:12-143
               
               
               Cow position:chr4:45723410-45723279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-149
               
               
               Cow position:chr4:56395677-56395540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-155
               
               
               Cow position:chr4:4084949-4085089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:12-155
               
               
               Cow position:chr4:19578547-19578407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):119, 18

               
               
               Conread position:12-156
               
               
               Cow position:chr4:46235001-46235139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:12-158
               
               
               Cow position:chr4:38935522-38935378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):70, 44

               
               
               Conread position:12-160
               
               
               Cow position:chr4:48152210-48152359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:12-161
               
               
               Cow position:chr4:65351496-65351645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):56, 117

               
               
               Conread position:12-167
               
               
               Cow position:chr4:21531479-21531631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:12-176
               
               
               Cow position:chr4:23808123-23807950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):51, 8

               
               
               Conread position:12-179
               
               
               Cow position:chr4:11506625-11506785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:12-179
               
               
               Cow position:chr4:59015741-59015590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr4:47038930-47038762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr4:19238382-19238213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):51, 66

               
               
               Conread position:12-183
               
               
               Cow position:chr4:27521721-27521547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):66, 139

               
               
               Conread position:12-183
               
               
               Cow position:chr4:41900129-41899965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr4:45076918-45077083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr4:47748575-47748409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr4:57566530-57566687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr4:65885664-65885496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr4:42277824-42277991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):61, 120

               
               
               Conread position:12-184
               
               
               Cow position:chr4:46560340-46560173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):87, 41

               
               
               Conread position:12-184
               
               
               Cow position:chr4:62370470-62370309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-191
               
               
               Cow position:chr4:43894648-43894827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):43, 122

               
               
               Conread position:12-191
               
               
               Cow position:chr4:44786199-44786028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:12-191
               
               
               Cow position:chr4:66380175-66380353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):43, 56

               
               
               Conread position:12-198
               
               
               Cow position:chr4:18756599-18756413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-206
               
               
               Cow position:chr4:57584077-57584271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-209
               
               
               Cow position:chr4:23984957-23985157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):57, 164

               
               
               Conread position:12-212
               
               
               Cow position:chr4:56853017-56852819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):33, 135

               
               
               Conread position:12-215
               
               
               Cow position:chr4:42080541-42080740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):181, 43

               
               
               Conread position:13-127
               
               
               Cow position:chr4:20196675-20196559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:13-130
               
               
               Cow position:chr4:60072587-60072698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:98
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:13-183
               
               
               Cow position:chr4:66256842-66256680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):104, 41

               
               
               Conread position:13-184
               
               
               Cow position:chr4:65825664-65825835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):135, 62

               
               
               Conread position:14-154
               
               
               Cow position:chr4:63769994-63769856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:14-155
               
               
               Cow position:chr4:22331284-22331146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:14-159
               
               
               Cow position:chr4:28753788-28753640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:14-159
               
               
               Cow position:chr4:48239187-48239334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):50, 68

               
               
               Conread position:14-177
               
               
               Cow position:chr4:12867259-12867105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:14-178
               
               
               Cow position:chr4:20877187-20877351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-181
               
               
               Cow position:chr4:62317608-62317439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):40, 54

               
               
               Conread position:14-182
               
               
               Cow position:chr4:3341116-3340947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:14-182
               
               
               Cow position:chr4:23509752-23509591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:14-182
               
               
               Cow position:chr4:45862572-45862412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:14-182
               
               
               Cow position:chr4:54478755-54478923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):55, 132

               
               
               Conread position:14-183
               
               
               Cow position:chr4:3388706-3388538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:14-183
               
               
               Cow position:chr4:68491174-68491001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:14-184
               
               
               Cow position:chr4:12048039-12047865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):95, 37

               
               
               Conread position:14-184
               
               
               Cow position:chr4:27632602-27632440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:14-184
               
               
               Cow position:chr4:45738304-45738482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:14-191
               
               
               Cow position:chr4:13344695-13344524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:14-192
               
               
               Cow position:chr4:27276384-27276559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):36, 48

               
               
               Conread position:16-184
               
               
               Cow position:chr4:508751-508916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:16-184
               
               
               Cow position:chr4:51769267-51769099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):60, 137

               
               
               Conread position:18-149
               
               
               Cow position:chr4:50131675-50131544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:18-172
               
               
               Cow position:chr4:23799607-23799761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):74, 34

               
               
               Conread position:18-172
               
               
               Cow position:chr4:30172068-30172223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:18-178
               
               
               Cow position:chr4:2099789-2099627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:18-183
               
               
               Cow position:chr4:14743410-14743245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:18-184
               
               
               Cow position:chr4:21112418-21112575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:18-191
               
               
               Cow position:chr4:48227534-48227701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:18-201
               
               
               Cow position:chr4:6653879-6653702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:19-147
               
               
               Cow position:chr4:46494459-46494333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:19-149
               
               
               Cow position:chr4:12720280-12720154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-161
               
               
               Cow position:chr4:22050958-22051100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:19-172
               
               
               Cow position:chr4:22127851-22128005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):137, 36

               
               
               Conread position:19-173
               
               
               Cow position:chr4:46761773-46761611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:19-175
               
               
               Cow position:chr4:56236399-56236550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:19-183
               
               
               Cow position:chr4:5577060-5577217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:19-183
               
               
               Cow position:chr4:9925477-9925635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-183
               
               
               Cow position:chr4:13140948-13141100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:19-183
               
               
               Cow position:chr4:23526857-23526688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):35, 90

               
               
               Conread position:19-184
               
               
               Cow position:chr4:33181702-33181537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:19-184
               
               
               Cow position:chr4:45636335-45636159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:19-187
               
               
               Cow position:chr4:479639-479800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:19-189
               
               
               Cow position:chr4:34234623-34234458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):161, 44

               
               
               Conread position:19-192
               
               
               Cow position:chr4:56805326-56805163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):143, 36

               
               
               Conread position:19-204
               
               
               Cow position:chr4:61268341-61268164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):183, 15

               
               
               Conread position:20-158
               
               
               Cow position:chr4:19200263-19200131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:20-181
               
               
               Cow position:chr4:61969572-61969729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:20-182
               
               
               Cow position:chr4:17186196-17186355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:20-183
               
               
               Cow position:chr4:45626479-45626633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:20-183
               
               
               Cow position:chr4:45874308-45874472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:20-184
               
               
               Cow position:chr4:11897149-11897302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:20-191
               
               
               Cow position:chr4:3268217-3268377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:21-191
               
               
               Cow position:chr4:45662355-45662525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):48, 99

               
               
               Conread position:24-177
               
               
               Cow position:chr4:41780084-41780239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):37, 87

               
               
               Conread position:25-161
               
               
               Cow position:chr4:57590521-57590654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:25-183
               
               
               Cow position:chr4:17790146-17790298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:26-184
               
               
               Cow position:chr4:45074206-45074056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:27-175
               
               
               Cow position:chr4:22907652-22907506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:27-178
               
               
               Cow position:chr4:21520728-21520577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:27-180
               
               
               Cow position:chr4:14761124-14760968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:27-182
               
               
               Cow position:chr4:23600315-23600162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:27-191
               
               
               Cow position:chr4:46455919-46456079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:28-184
               
               
               Cow position:chr4:45706191-45706036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):47, 131

               
               
               Conread position:29-184
               
               
               Cow position:chr4:12591070-12591221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:30-156
               
               
               Cow position:chr4:20282388-20282262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:98
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):108, 57

               
               
               Conread position:30-193
               
               
               Cow position:chr4:45582970-45583135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):22, 132

               
               
               Conread position:31-156
               
               
               Cow position:chr4:41099083-41098956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:31-161
               
               
               Cow position:chr4:46447037-46447166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:31-182
               
               
               Cow position:chr4:42481327-42481178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:32-161
               
               
               Cow position:chr4:51630931-51630798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):18, 104

               
               
               Conread position:34-209
               
               
               Cow position:chr4:54650345-54650518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):124, 21

               
               
               Conread position:35-184
               
               
               Cow position:chr4:45837486-45837635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:36-177
               
               
               Cow position:chr4:13520733-13520880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:36-184
               
               
               Cow position:chr4:51708207-51708058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):25, 6

               
               
               Conread position:37-172
               
               
               Cow position:chr4:54543523-54543659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:41-184
               
               
               Cow position:chr4:16070543-16070680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:41-184
               
               
               Cow position:chr4:65950790-65950648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:41-191
               
               
               Cow position:chr4:42231888-42232037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:42-184
               
               
               Cow position:chr4:34369313-34369457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:45-179
               
               
               Cow position:chr4:30795215-30795344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):123, 10

               
               
               Conread position:47-182
               
               
               Cow position:chr4:33091503-33091368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-164
               
               
               Cow position:chr4:7729308-7729424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-173
               
               
               Cow position:chr4:65650006-65650130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:100
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:48-176
               
               
               Cow position:chr4:30792097-30791969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-178
               
               
               Cow position:chr4:50676045-50676171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:48-181
               
               
               Cow position:chr4:19098601-19098467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:48-183
               
               
               Cow position:chr4:19304473-19304338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):60, 20

               
               
               Conread position:48-183
               
               
               Cow position:chr4:20142783-20142912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:48-183
               
               
               Cow position:chr4:21874931-21874796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-183
               
               
               Cow position:chr4:48902496-48902631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr4:44782503-44782368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr4:59378038-59377902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-187
               
               
               Cow position:chr4:2000-1861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-206
               
               
               Cow position:chr4:45367868-45367711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):145, 0

               
               
               Conread position:48-239
               
               
               Cow position:chr4:65806024-65805836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:49-182
               
               
               Cow position:chr4:51920672-51920539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:49-184
               
               
               Cow position:chr4:47280255-47280122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:51-181
               
               
               Cow position:chr4:53169469-53169599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:51-184
               
               
               Cow position:chr4:12135801-12135933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:55-171
               
               
               Cow position:chr4:21532976-21533090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:55-171
               
               
               Cow position:chr4:43865735-43865851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:55-175
               
               
               Cow position:chr4:45563868-45563744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:56-154
               
               
               Cow position:chr4:28781527-28781625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:83
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-180
               
               
               Cow position:chr4:19456566-19456690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-181
               
               
               Cow position:chr4:60719222-60719097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:96
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr4:15462130-15462260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:57-171
               
               
               Cow position:chr4:5047026-5047140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:57-180
               
               
               Cow position:chr4:54854682-54854807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:57-182
               
               
               Cow position:chr4:32272853-32272978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):13, 91

               
               
               Conread position:57-184
               
               
               Cow position:chr4:16762606-16762733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:57-184
               
               
               Cow position:chr4:46591786-46591660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:57-190
               
               
               Cow position:chr4:45261926-45262061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:57-191
               
               
               Cow position:chr4:19321958-19322092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:59-178
               
               
               Cow position:chr4:26401072-26400955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:59-184
               
               
               Cow position:chr4:13941574-13941453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:100
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:61-178
               
               
               Cow position:chr4:22849376-22849493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):103, 78

               
               
               Conread position:64-184
               
               
               Cow position:chr4:8083685-8083806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:64-184
               
               
               Cow position:chr4:65175032-65175152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:66-185
               
               
               Cow position:chr4:19561899-19561780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:67-177
               
               
               Cow position:chr4:1495299-1495408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:93
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:67-181
               
               
               Cow position:chr4:24481563-24481673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:67-184
               
               
               Cow position:chr4:28068002-28068114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:100
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:67-184
               
               
               Cow position:chr4:37935174-37935292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:68-155
               
               
               Cow position:chr4:54975609-54975522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:88
               
               
               Alignm identity:80
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:68-184
               
               
               Cow position:chr4:46702549-46702665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:69-183
               
               
               Cow position:chr4:8705102-8704986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):88, 103

               
               
               Conread position:69-184
               
               
               Cow position:chr4:69543290-69543175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:90
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:71-183
               
               
               Cow position:chr4:61926586-61926696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:72-184
               
               
               Cow position:chr4:5460757-5460868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:72-191
               
               
               Cow position:chr4:21017-20898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:81-200
               
               
               Cow position:chr4:68819684-68819565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:93
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:89-184
               
               
               Cow position:chr4:65432238-65432143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:96
               
               
               Alignm identity:80
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-154
               
               
               Cow position:chr5:21339054-21339213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):47, 7

               
               
               Conread position:1-181
               
               
               Cow position:chr5:50578958-50579137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):91, 7

               
               
               Conread position:1-183
               
               
               Cow position:chr5:66659720-66659536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):67, 7

               
               
               Conread position:1-184
               
               
               Cow position:chr5:44163167-44163343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):157, 7

               
               
               Conread position:1-185
               
               
               Cow position:chr5:57687374-57687561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):122, 8

               
               
               Conread position:1-191
               
               
               Cow position:chr5:5016627-5016448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:2-182
               
               
               Cow position:chr5:66366714-66366538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:2-187
               
               
               Cow position:chr5:695070-694887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):18, 26

               
               
               Conread position:3-147
               
               
               Cow position:chr5:26149240-26149097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:3-149
               
               
               Cow position:chr5:1678795-1678649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):70, 91

               
               
               Conread position:3-154
               
               
               Cow position:chr5:19052586-19052736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:3-155
               
               
               Cow position:chr5:55162833-55162681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-155
               
               
               Cow position:chr5:69682142-69682294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-158
               
               
               Cow position:chr5:63763870-63763716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):153, 69

               
               
               Conread position:3-168
               
               
               Cow position:chr5:32064773-32064938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):82, 69

               
               
               Conread position:3-174
               
               
               Cow position:chr5:64492481-64492310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-175
               
               
               Cow position:chr5:54751013-54750842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:3-176
               
               
               Cow position:chr5:21525366-21525194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):106, 84

               
               
               Conread position:3-176
               
               
               Cow position:chr5:64026810-64026985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:3-178
               
               
               Cow position:chr5:12300115-12299943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):74, 32

               
               
               Conread position:3-178
               
               
               Cow position:chr5:26894508-26894687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:3-178
               
               
               Cow position:chr5:40122403-40122578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-178
               
               
               Cow position:chr5:62572736-62572564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:3-178
               
               
               Cow position:chr5:73424472-73424649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):28, 159

               
               
               Conread position:3-179
               
               
               Cow position:chr5:53795226-53795056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):132, 44

               
               
               Conread position:3-181
               
               
               Cow position:chr5:38853556-38853378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-182
               
               
               Cow position:chr5:5202108-5201929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-182
               
               
               Cow position:chr5:18513501-18513678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:3-182
               
               
               Cow position:chr5:18702016-18702192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:3-182
               
               
               Cow position:chr5:37679378-37679200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:3-182
               
               
               Cow position:chr5:57279591-57279412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr5:58725-58905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):59, 127

               
               
               Conread position:3-183
               
               
               Cow position:chr5:1005661-1005841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr5:7177357-7177178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr5:30035274-30035094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr5:32935950-32935772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr5:37713447-37713627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr5:40889090-40889270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr5:41935450-41935624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):124, 111

               
               
               Conread position:3-183
               
               
               Cow position:chr5:44196725-44196902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr5:57393098-57393277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr5:60209941-60210116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):36, 47

               
               
               Conread position:3-183
               
               
               Cow position:chr5:60514821-60515001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):78, 123

               
               
               Conread position:3-183
               
               
               Cow position:chr5:63241184-63241004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-184
               
               
               Cow position:chr5:3677933-3677749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):72, 156

               
               
               Conread position:3-184
               
               
               Cow position:chr5:65679767-65679944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):17, 75

               
               
               Conread position:3-187
               
               
               Cow position:chr5:6503671-6503858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:3-187
               
               
               Cow position:chr5:37255128-37255312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-187
               
               
               Cow position:chr5:51920495-51920311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-187
               
               
               Cow position:chr5:61576752-61576568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-189
               
               
               Cow position:chr5:43839792-43839977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):173, 150

               
               
               Conread position:3-191
               
               
               Cow position:chr5:1104672-1104860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-201
               
               
               Cow position:chr5:23209164-23208966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:4-168
               
               
               Cow position:chr5:1027271-1027425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:4-170
               
               
               Cow position:chr5:56434087-56433921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):61, 68

               
               
               Conread position:4-180
               
               
               Cow position:chr5:453755-453587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:5-149
               
               
               Cow position:chr5:16637647-16637798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:5-150
               
               
               Cow position:chr5:48819479-48819333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):47, 118

               
               
               Conread position:5-175
               
               
               Cow position:chr5:12562557-12562725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):126, 50

               
               
               Conread position:5-180
               
               
               Cow position:chr5:6695752-6695575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):69, 98

               
               
               Conread position:5-183
               
               
               Cow position:chr5:52164970-52165150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:5-204
               
               
               Cow position:chr5:3743529-3743329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):65, 192

               
               
               Conread position:5-210
               
               
               Cow position:chr5:26167623-26167420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):179, 50

               
               
               Conread position:7-153
               
               
               Cow position:chr5:12668791-12668927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:7-161
               
               
               Cow position:chr5:65745567-65745716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:7-179
               
               
               Cow position:chr5:3772043-3771879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:7-180
               
               
               Cow position:chr5:49920127-49919954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:7-183
               
               
               Cow position:chr5:64140739-64140564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):150, 57

               
               
               Conread position:7-183
               
               
               Cow position:chr5:66582171-66581988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):61, 91

               
               
               Conread position:7-183
               
               
               Cow position:chr5:68605064-68604880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):52, 154

               
               
               Conread position:7-184
               
               
               Cow position:chr5:17383953-17384123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:7-207
               
               
               Cow position:chr5:71015684-71015883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):159, 38

               
               
               Conread position:8-124
               
               
               Cow position:chr5:75711937-75712052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:8-126
               
               
               Cow position:chr5:44868555-44868441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-130
               
               
               Cow position:chr5:14419817-14419930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:8-130
               
               
               Cow position:chr5:45854701-45854577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:8-131
               
               
               Cow position:chr5:31317201-31317079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):87, 44

               
               
               Conread position:8-131
               
               
               Cow position:chr5:58487573-58487454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:101
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-136
               
               
               Cow position:chr5:56624314-56624443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:8-137
               
               
               Cow position:chr5:29060739-29060862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-140
               
               
               Cow position:chr5:69765834-69765964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:103
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-141
               
               
               Cow position:chr5:24108858-24108991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-142
               
               
               Cow position:chr5:55783761-55783895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-145
               
               
               Cow position:chr5:54712868-54713000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:8-145
               
               
               Cow position:chr5:56643268-56643132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):33, 61

               
               
               Conread position:8-148
               
               
               Cow position:chr5:718349-718212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr5:4981648-4981512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr5:25035054-25035196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr5:40292737-40292877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr5:57447464-57447604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-150
               
               
               Cow position:chr5:59662857-59662998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:8-154
               
               
               Cow position:chr5:18289318-18289178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-155
               
               
               Cow position:chr5:29599352-29599491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-155
               
               
               Cow position:chr5:37253623-37253484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-155
               
               
               Cow position:chr5:47602008-47601867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:8-155
               
               
               Cow position:chr5:56734484-56734343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:8-155
               
               
               Cow position:chr5:60100662-60100525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-155
               
               
               Cow position:chr5:60207905-60207763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:8-155
               
               
               Cow position:chr5:74887699-74887845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):72, 47

               
               
               Conread position:8-156
               
               
               Cow position:chr5:30492591-30492740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):56, 71

               
               
               Conread position:8-157
               
               
               Cow position:chr5:41530736-41530887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:8-161
               
               
               Cow position:chr5:17987693-17987844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:8-161
               
               
               Cow position:chr5:20345738-20345587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):76, 92

               
               
               Conread position:8-161
               
               
               Cow position:chr5:34787772-34787623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:8-161
               
               
               Cow position:chr5:50525720-50525573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):147, 47

               
               
               Conread position:8-161
               
               
               Cow position:chr5:65140500-65140345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):132, 85

               
               
               Conread position:8-163
               
               
               Cow position:chr5:58401765-58401616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-164
               
               
               Cow position:chr5:19294319-19294480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):43, 86

               
               
               Conread position:8-164
               
               
               Cow position:chr5:51012200-51012045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):99, 83

               
               
               Conread position:8-167
               
               
               Cow position:chr5:20288058-20288218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):81, 152

               
               
               Conread position:8-167
               
               
               Cow position:chr5:59335973-59335813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:8-168
               
               
               Cow position:chr5:7139641-7139789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-168
               
               
               Cow position:chr5:17062879-17063037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):148, 0

               
               
               Conread position:8-168
               
               
               Cow position:chr5:53779355-53779195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):148, 47

               
               
               Conread position:8-170
               
               
               Cow position:chr5:28881482-28881652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-170
               
               
               Cow position:chr5:60523927-60523772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):140, 45

               
               
               Conread position:8-172
               
               
               Cow position:chr5:24996021-24996184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):74, 29

               
               
               Conread position:8-173
               
               
               Cow position:chr5:48061910-48062077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):52, 90

               
               
               Conread position:8-175
               
               
               Cow position:chr5:57755834-57755997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:8-176
               
               
               Cow position:chr5:62996159-62995991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-177
               
               
               Cow position:chr5:67932266-67932439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:8-178
               
               
               Cow position:chr5:20127108-20126935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):128, 56

               
               
               Conread position:8-179
               
               
               Cow position:chr5:2240789-2240958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):149, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr5:19752501-19752338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr5:30253940-30253772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr5:30628953-30629128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):62, 87

               
               
               Conread position:8-179
               
               
               Cow position:chr5:46704100-46704268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):68, 55

               
               
               Conread position:8-179
               
               
               Cow position:chr5:53980552-53980723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:143
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr5:55942177-55942348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr5:57156100-57156281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):56, 96

               
               
               Conread position:8-179
               
               
               Cow position:chr5:57767785-57767954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr5:59384486-59384658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):31, 22

               
               
               Conread position:8-180
               
               
               Cow position:chr5:42753096-42752938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-180
               
               
               Cow position:chr5:51125818-51125979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:8-180
               
               
               Cow position:chr5:52108058-52108238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):42, 109

               
               
               Conread position:8-180
               
               
               Cow position:chr5:64843765-64843941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr5:12902119-12901946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr5:29828248-29828077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):39, 69

               
               
               Conread position:8-181
               
               
               Cow position:chr5:36143178-36143016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr5:65760334-65760503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):42, 62

               
               
               Conread position:8-182
               
               
               Cow position:chr5:6443943-6444125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):48, 137

               
               
               Conread position:8-182
               
               
               Cow position:chr5:16668893-16668725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr5:30247325-30247494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr5:34288054-34288222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):73, 54

               
               
               Conread position:8-182
               
               
               Cow position:chr5:39035982-39035808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):42, 89

               
               
               Conread position:8-182
               
               
               Cow position:chr5:39447325-39447507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr5:41165282-41165116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr5:45397767-45397601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr5:47220692-47220516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):62, 46

               
               
               Conread position:8-182
               
               
               Cow position:chr5:49821631-49821456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:143
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr5:52138138-52137963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):42, 30

               
               
               Conread position:8-182
               
               
               Cow position:chr5:54875493-54875671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):133, 75

               
               
               Conread position:8-182
               
               
               Cow position:chr5:57399051-57399224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):147, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr5:57744710-57744896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):42, 30

               
               
               Conread position:8-182
               
               
               Cow position:chr5:59626772-59626943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr5:64175930-64176098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr5:69383451-69383283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr5:7057197-7057374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):51, 125

               
               
               Conread position:8-183
               
               
               Cow position:chr5:12873952-12873778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):20, 69

               
               
               Conread position:8-183
               
               
               Cow position:chr5:14550382-14550557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr5:17828277-17828452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr5:20128254-20128079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr5:20843198-20843368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):33, 26

               
               
               Conread position:8-183
               
               
               Cow position:chr5:31475884-31475709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr5:33560538-33560707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr5:33834240-33834069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr5:34347533-34347701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr5:35145535-35145354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):47, 117

               
               
               Conread position:8-183
               
               
               Cow position:chr5:35513421-35513242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr5:36868937-36868764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr5:43604339-43604168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr5:44734527-44734698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr5:47316772-47316947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):52, 36

               
               
               Conread position:8-183
               
               
               Cow position:chr5:47756972-47756803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr5:48867270-48867437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr5:50723248-50723073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr5:56059864-56060043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr5:57419596-57419767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr5:61049534-61049359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr5:61914771-61914590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr5:61999356-61999530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):152, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr5:64060646-64060473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr5:65776177-65776358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):37, 27

               
               
               Conread position:8-183
               
               
               Cow position:chr5:65883424-65883599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr5:2469010-2469181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr5:4267860-4267696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr5:16937834-16937996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr5:18062110-18062293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr5:18574382-18574201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):45, 132

               
               
               Conread position:8-184
               
               
               Cow position:chr5:24464938-24464770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):150, 26

               
               
               Conread position:8-184
               
               
               Cow position:chr5:26262485-26262648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):37, 42

               
               
               Conread position:8-184
               
               
               Cow position:chr5:33273897-33273721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):52, 144

               
               
               Conread position:8-184
               
               
               Cow position:chr5:35969740-35969559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):49, 169

               
               
               Conread position:8-184
               
               
               Cow position:chr5:39937317-39937142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):162, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr5:42064407-42064231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr5:43403109-43402931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):50, 86

               
               
               Conread position:8-184
               
               
               Cow position:chr5:43858218-43858393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr5:46022858-46023039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):49, 15

               
               
               Conread position:8-184
               
               
               Cow position:chr5:53947099-53946923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr5:55965692-55965868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr5:57101326-57101496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr5:59241776-59241952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr5:64523664-64523837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:8-185
               
               
               Cow position:chr5:7012649-7012822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:8-185
               
               
               Cow position:chr5:52853167-52852996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-187
               
               
               Cow position:chr5:57265702-57265881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-187
               
               
               Cow position:chr5:66972630-66972452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):43, 21

               
               
               Conread position:8-187
               
               
               Cow position:chr5:69427261-69427428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-190
               
               
               Cow position:chr5:44722313-44722492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:8-190
               
               
               Cow position:chr5:60741445-60741265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):166, 68

               
               
               Conread position:8-191
               
               
               Cow position:chr5:5257087-5257269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):39, 49

               
               
               Conread position:8-191
               
               
               Cow position:chr5:11667984-11668166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):43, 57

               
               
               Conread position:8-191
               
               
               Cow position:chr5:25598029-25597852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr5:45225620-45225794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr5:55956110-55955927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):110, 47

               
               
               Conread position:8-191
               
               
               Cow position:chr5:56860643-56860466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):44, 37

               
               
               Conread position:8-191
               
               
               Cow position:chr5:57062328-57062510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):23, 84

               
               
               Conread position:8-191
               
               
               Cow position:chr5:59395864-59395681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):172, 165

               
               
               Conread position:8-192
               
               
               Cow position:chr5:20779199-20779377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-192
               
               
               Cow position:chr5:57526727-57526907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):182, 105

               
               
               Conread position:8-193
               
               
               Cow position:chr5:50942962-50943140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):82, 47

               
               
               Conread position:8-201
               
               
               Cow position:chr5:16214881-16214697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:8-202
               
               
               Cow position:chr5:38820459-38820651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:8-204
               
               
               Cow position:chr5:36823072-36822891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):178, 30

               
               
               Conread position:8-213
               
               
               Cow position:chr5:26147790-26147587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):176, 60

               
               
               Conread position:8-239
               
               
               Cow position:chr5:47743821-47743595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):186, 41

               
               
               Conread position:9-149
               
               
               Cow position:chr5:55749837-55749976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:9-170
               
               
               Cow position:chr5:44028106-44028266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):54, 79

               
               
               Conread position:9-181
               
               
               Cow position:chr5:19079442-19079281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:9-181
               
               
               Cow position:chr5:54127486-54127318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):165, 46

               
               
               Conread position:9-182
               
               
               Cow position:chr5:22565818-22565647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:9-183
               
               
               Cow position:chr5:5751408-5751582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:9-184
               
               
               Cow position:chr5:2827577-2827400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):51, 139

               
               
               Conread position:9-184
               
               
               Cow position:chr5:15471120-15470959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:9-184
               
               
               Cow position:chr5:50101179-50101350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):133, 46

               
               
               Conread position:9-201
               
               
               Cow position:chr5:35459097-35459285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):125, 45

               
               
               Conread position:10-160
               
               
               Cow position:chr5:12557089-12557238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):145, 45

               
               
               Conread position:10-182
               
               
               Cow position:chr5:30845304-30845141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:10-182
               
               
               Cow position:chr5:62341231-62341056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:10-183
               
               
               Cow position:chr5:32975360-32975526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:10-184
               
               
               Cow position:chr5:20882415-20882598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:10-184
               
               
               Cow position:chr5:29352934-29353099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:10-184
               
               
               Cow position:chr5:35228944-35229112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:10-185
               
               
               Cow position:chr5:55756215-55756395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:11-131
               
               
               Cow position:chr5:52778367-52778487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-144
               
               
               Cow position:chr5:14168043-14167908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):40, 122

               
               
               Conread position:11-147
               
               
               Cow position:chr5:22667267-22667134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:11-148
               
               
               Cow position:chr5:61456040-61455906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:11-150
               
               
               Cow position:chr5:35235490-35235629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-152
               
               
               Cow position:chr5:15770255-15770397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):44, 131

               
               
               Conread position:11-154
               
               
               Cow position:chr5:43846181-43846329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):82, 18

               
               
               Conread position:11-156
               
               
               Cow position:chr5:63939861-63940007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):61, 126

               
               
               Conread position:11-170
               
               
               Cow position:chr5:6876768-6876928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):107, 57

               
               
               Conread position:11-170
               
               
               Cow position:chr5:11229474-11229635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):41, 19

               
               
               Conread position:11-171
               
               
               Cow position:chr5:45405243-45405083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-175
               
               
               Cow position:chr5:7675961-7676120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:11-175
               
               
               Cow position:chr5:71445589-71445425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-176
               
               
               Cow position:chr5:25495153-25495324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:11-178
               
               
               Cow position:chr5:19335580-19335749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:11-178
               
               
               Cow position:chr5:65050022-65050177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:11-179
               
               
               Cow position:chr5:4347496-4347673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:11-179
               
               
               Cow position:chr5:9486886-9487051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:11-179
               
               
               Cow position:chr5:37842082-37842248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):69, 44

               
               
               Conread position:11-179
               
               
               Cow position:chr5:41983921-41983755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):71, 147

               
               
               Conread position:11-179
               
               
               Cow position:chr5:53935357-53935518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:11-179
               
               
               Cow position:chr5:72045478-72045643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:11-180
               
               
               Cow position:chr5:8736080-8736249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):71, 55

               
               
               Conread position:11-182
               
               
               Cow position:chr5:7044509-7044677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr5:11539855-11540022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):77, 100

               
               
               Conread position:11-182
               
               
               Cow position:chr5:26548946-26549112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr5:30233107-30232936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):73, 98

               
               
               Conread position:11-182
               
               
               Cow position:chr5:55795773-55795939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):134, 43

               
               
               Conread position:11-182
               
               
               Cow position:chr5:57686544-57686709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr5:65941053-65941222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):7, 54

               
               
               Conread position:11-183
               
               
               Cow position:chr5:5760112-5760286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):46, 110

               
               
               Conread position:11-183
               
               
               Cow position:chr5:11562530-11562696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):145, 43

               
               
               Conread position:11-183
               
               
               Cow position:chr5:15364468-15364296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):57, 44

               
               
               Conread position:11-183
               
               
               Cow position:chr5:32394799-32394626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):35, 63

               
               
               Conread position:11-183
               
               
               Cow position:chr5:35208460-35208291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):152, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr5:44796539-44796706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr5:54350174-54350334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr5:63172851-63173016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr5:65343825-65343650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr5:5856057-5855884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr5:14903869-14904043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):48, 16

               
               
               Conread position:11-184
               
               
               Cow position:chr5:35246911-35247086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:146
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):152, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr5:53055362-53055535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr5:70189275-70189100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):19, 150

               
               
               Conread position:11-185
               
               
               Cow position:chr5:17105042-17104878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:11-190
               
               
               Cow position:chr5:41885111-41884942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-191
               
               
               Cow position:chr5:2309361-2309537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-191
               
               
               Cow position:chr5:44810040-44810220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-211
               
               
               Cow position:chr5:38040371-38040567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):175, 44

               
               
               Conread position:12-104
               
               
               Cow position:chr5:74690056-74690148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:93
               
               
               Alignm identity:80
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-130
               
               
               Cow position:chr5:28660427-28660310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:12-138
               
               
               Cow position:chr5:54554989-54555118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:12-140
               
               
               Cow position:chr5:32975962-32975828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:106
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-145
               
               
               Cow position:chr5:55949482-55949614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:102
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:12-148
               
               
               Cow position:chr5:73253601-73253470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-154
               
               
               Cow position:chr5:21721276-21721414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:12-155
               
               
               Cow position:chr5:57556228-57556084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:12-156
               
               
               Cow position:chr5:70346505-70346355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:12-170
               
               
               Cow position:chr5:63234627-63234787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):38, 69

               
               
               Conread position:12-172
               
               
               Cow position:chr5:30221581-30221740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:12-172
               
               
               Cow position:chr5:43611896-43611736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-176
               
               
               Cow position:chr5:44901716-44901543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:12-177
               
               
               Cow position:chr5:51233827-51233986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:12-178
               
               
               Cow position:chr5:742927-742763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:12-178
               
               
               Cow position:chr5:56548762-56548604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:12-179
               
               
               Cow position:chr5:38169089-38168925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):88, 49

               
               
               Conread position:12-179
               
               
               Cow position:chr5:62011881-62011714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-179
               
               
               Cow position:chr5:69461531-69461364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):118, 56

               
               
               Conread position:12-181
               
               
               Cow position:chr5:29256512-29256678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:12-181
               
               
               Cow position:chr5:50087965-50087800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):74, 138

               
               
               Conread position:12-182
               
               
               Cow position:chr5:21829063-21828896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr5:49474358-49474517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr5:54753053-54753224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr5:1987812-1987642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr5:11427037-11427206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):66, 72

               
               
               Conread position:12-183
               
               
               Cow position:chr5:12760924-12761091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr5:29681291-29681125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr5:34976643-34976815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr5:58519218-58519389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr5:6520202-6520037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):131, 42

               
               
               Conread position:12-184
               
               
               Cow position:chr5:60948328-60948159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):127, 56

               
               
               Conread position:12-184
               
               
               Cow position:chr5:67634312-67634491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:12-185
               
               
               Cow position:chr5:30562124-30561957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:12-191
               
               
               Cow position:chr5:17999300-17999473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:12-202
               
               
               Cow position:chr5:44799002-44798813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):184, 171

               
               
               Conread position:12-207
               
               
               Cow position:chr5:54340964-54340775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:12-214
               
               
               Cow position:chr5:5666624-5666822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):188, 145

               
               
               Conread position:12-250
               
               
               Cow position:chr5:19561250-19561495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):144, 162

               
               
               Conread position:13-144
               
               
               Cow position:chr5:75116375-75116507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):37, 65

               
               
               Conread position:13-179
               
               
               Cow position:chr5:35190301-35190141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:13-182
               
               
               Cow position:chr5:54312796-54312629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:13-182
               
               
               Cow position:chr5:57074137-57074303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:13-183
               
               
               Cow position:chr5:61007262-61007092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):61, 39

               
               
               Conread position:13-183
               
               
               Cow position:chr5:73167819-73167984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:13-184
               
               
               Cow position:chr5:49501623-49501798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:13-184
               
               
               Cow position:chr5:61784530-61784701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:13-187
               
               
               Cow position:chr5:26097485-26097313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:13-191
               
               
               Cow position:chr5:15479329-15479145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):36, 97

               
               
               Conread position:14-133
               
               
               Cow position:chr5:35320368-35320482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:99
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:14-167
               
               
               Cow position:chr5:56327529-56327678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):117, 41

               
               
               Conread position:14-171
               
               
               Cow position:chr5:31527198-31527357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:14-172
               
               
               Cow position:chr5:31648609-31648460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:14-179
               
               
               Cow position:chr5:22608835-22608673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:14-181
               
               
               Cow position:chr5:4280638-4280477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:141
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:14-182
               
               
               Cow position:chr5:30276880-30276718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:14-182
               
               
               Cow position:chr5:56613369-56613536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):70, 42

               
               
               Conread position:14-183
               
               
               Cow position:chr5:1247459-1247293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:14-183
               
               
               Cow position:chr5:13270821-13270990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):69, 137

               
               
               Conread position:14-183
               
               
               Cow position:chr5:22102752-22102585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:14-183
               
               
               Cow position:chr5:46063690-46063524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:14-183
               
               
               Cow position:chr5:61580476-61580309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):78, 57

               
               
               Conread position:14-184
               
               
               Cow position:chr5:65552525-65552685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:15-181
               
               
               Cow position:chr5:16939399-16939565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:18-141
               
               
               Cow position:chr5:57994687-57994809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:95
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:18-157
               
               
               Cow position:chr5:23855483-23855616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:111
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:18-166
               
               
               Cow position:chr5:57086872-57087019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:18-168
               
               
               Cow position:chr5:38079565-38079409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):32, 79

               
               
               Conread position:18-181
               
               
               Cow position:chr5:24915335-24915498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:18-181
               
               
               Cow position:chr5:70749996-70750156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:18-182
               
               
               Cow position:chr5:34914865-34915025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:18-183
               
               
               Cow position:chr5:20812739-20812573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):42, 102

               
               
               Conread position:18-183
               
               
               Cow position:chr5:61492288-61492120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:19-135
               
               
               Cow position:chr5:29507400-29507514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:93
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:19-149
               
               
               Cow position:chr5:29010445-29010317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:19-154
               
               
               Cow position:chr5:9352699-9352566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:19-156
               
               
               Cow position:chr5:49358490-49358624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:19-170
               
               
               Cow position:chr5:2355711-2355560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):104, 75

               
               
               Conread position:19-173
               
               
               Cow position:chr5:19298480-19298642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:19-181
               
               
               Cow position:chr5:21003497-21003345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):82, 31

               
               
               Conread position:19-182
               
               
               Cow position:chr5:33482905-33482749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):143, 36

               
               
               Conread position:19-184
               
               
               Cow position:chr5:17566245-17566412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):45, 157

               
               
               Conread position:19-185
               
               
               Cow position:chr5:20994896-20995067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):140, 13

               
               
               Conread position:19-185
               
               
               Cow position:chr5:42845404-42845568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):94, 36

               
               
               Conread position:19-185
               
               
               Cow position:chr5:71579650-71579488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):45, 79

               
               
               Conread position:19-191
               
               
               Cow position:chr5:11769461-11769290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):39, 50

               
               
               Conread position:19-215
               
               
               Cow position:chr5:72167309-72167503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):48, 167

               
               
               Conread position:20-147
               
               
               Cow position:chr5:15077446-15077571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:20-147
               
               
               Cow position:chr5:52192245-52192366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:20-155
               
               
               Cow position:chr5:34918531-34918401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:20-155
               
               
               Cow position:chr5:49207141-49207272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:20-161
               
               
               Cow position:chr5:46749637-46749777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:20-167
               
               
               Cow position:chr5:30497685-30497540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:20-181
               
               
               Cow position:chr5:52723763-52723605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:20-183
               
               
               Cow position:chr5:30419165-30419002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:20-183
               
               
               Cow position:chr5:52001433-52001596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:20-184
               
               
               Cow position:chr5:51053460-51053627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):138, 44

               
               
               Conread position:20-184
               
               
               Cow position:chr5:71495010-71494847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:20-185
               
               
               Cow position:chr5:16185568-16185403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:20-191
               
               
               Cow position:chr5:46681530-46681698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:21-149
               
               
               Cow position:chr5:45436309-45436435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:21-184
               
               
               Cow position:chr5:30805345-30805191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:21-184
               
               
               Cow position:chr5:37646353-37646517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):41, 99

               
               
               Conread position:21-205
               
               
               Cow position:chr5:26370873-26370688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:25-171
               
               
               Cow position:chr5:41522501-41522639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:25-177
               
               
               Cow position:chr5:36370463-36370312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:26-161
               
               
               Cow position:chr5:29979782-29979909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:27-186
               
               
               Cow position:chr5:17602024-17602180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:27-214
               
               
               Cow position:chr5:60126877-60126688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):43, 134

               
               
               Conread position:29-181
               
               
               Cow position:chr5:14473220-14473375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:29-183
               
               
               Cow position:chr5:11289209-11289366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:29-184
               
               
               Cow position:chr5:3589208-3589057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:31-146
               
               
               Cow position:chr5:73914529-73914414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:90
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:31-203
               
               
               Cow position:chr5:54404676-54404845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:35-181
               
               
               Cow position:chr5:26497507-26497648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:35-182
               
               
               Cow position:chr5:30949740-30949887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:35-183
               
               
               Cow position:chr5:26093991-26094139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:39-182
               
               
               Cow position:chr5:7723834-7723693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:41-178
               
               
               Cow position:chr5:4956443-4956580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:47-164
               
               
               Cow position:chr5:61875698-61875583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:47-179
               
               
               Cow position:chr5:60715205-60715335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:100
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:47-184
               
               
               Cow position:chr5:28230329-28230188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:47-184
               
               
               Cow position:chr5:55019458-55019318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:48-149
               
               
               Cow position:chr5:54154041-54154141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:85
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:48-168
               
               
               Cow position:chr5:54067875-54068000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:48-183
               
               
               Cow position:chr5:53855868-53855727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:48-183
               
               
               Cow position:chr5:63426844-63426978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):22, 9

               
               
               Conread position:48-184
               
               
               Cow position:chr5:12738396-12738529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):19, 109

               
               
               Conread position:48-184
               
               
               Cow position:chr5:43992486-43992350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr5:45419975-45420111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr5:54060438-54060304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr5:55129505-55129369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr5:58446972-58446833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:48-191
               
               
               Cow position:chr5:23678541-23678680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:48-191
               
               
               Cow position:chr5:60908826-60908685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:48-201
               
               
               Cow position:chr5:26476856-26477007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:49-164
               
               
               Cow position:chr5:23866319-23866434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:92
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:49-183
               
               
               Cow position:chr5:59872921-59873053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:49-190
               
               
               Cow position:chr5:17724056-17724196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:51-148
               
               
               Cow position:chr5:63059220-63059123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:83
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:51-178
               
               
               Cow position:chr5:4709993-4710119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:51-183
               
               
               Cow position:chr5:54436914-54436783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):20, 102

               
               
               Conread position:51-184
               
               
               Cow position:chr5:59627259-59627126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:51-191
               
               
               Cow position:chr5:74858734-74858594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):108, 104

               
               
               Conread position:52-164
               
               
               Cow position:chr5:18091163-18091050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:90
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:52-183
               
               
               Cow position:chr5:24946402-24946267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):18, 34

               
               
               Conread position:53-184
               
               
               Cow position:chr5:58555296-58555163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:55-181
               
               
               Cow position:chr5:29771683-29771557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:55-184
               
               
               Cow position:chr5:458643-458515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:55-184
               
               
               Cow position:chr5:26723601-26723474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:55-198
               
               
               Cow position:chr5:56361950-56361808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):22, 97

               
               
               Conread position:55-201
               
               
               Cow position:chr5:54311491-54311346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:56-180
               
               
               Cow position:chr5:57230183-57230308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:56-183
               
               
               Cow position:chr5:38739249-38739376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-183
               
               
               Cow position:chr5:58856258-58856130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):7, 85

               
               
               Conread position:56-184
               
               
               Cow position:chr5:9369119-9369245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:56-201
               
               
               Cow position:chr5:64758615-64758757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:56-203
               
               
               Cow position:chr5:51490448-51490595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:57-166
               
               
               Cow position:chr5:36251265-36251156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:91
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:57-183
               
               
               Cow position:chr5:38382647-38382772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):13, 27

               
               
               Conread position:57-184
               
               
               Cow position:chr5:45037402-45037276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:97
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:57-184
               
               
               Cow position:chr5:50575936-50575810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:57-187
               
               
               Cow position:chr5:27293731-27293861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:58-183
               
               
               Cow position:chr5:45273350-45273474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:97
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:58-184
               
               
               Cow position:chr5:41294233-41294107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):33, 114

               
               
               Conread position:58-184
               
               
               Cow position:chr5:51277702-51277827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:59-183
               
               
               Cow position:chr5:37808512-37808636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:59-191
               
               
               Cow position:chr5:35126206-35126074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-179
               
               
               Cow position:chr5:54086684-54086571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:64-180
               
               
               Cow position:chr5:36839105-36838990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:64-184
               
               
               Cow position:chr5:39258652-39258534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:97
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):13, 87

               
               
               Conread position:64-184
               
               
               Cow position:chr5:42623034-42623153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:64-184
               
               
               Cow position:chr5:54375356-54375476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-184
               
               
               Cow position:chr5:54767763-54767883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-184
               
               
               Cow position:chr5:63987299-63987419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):11, 80

               
               
               Conread position:64-199
               
               
               Cow position:chr5:35725752-35725892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:111
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:65-179
               
               
               Cow position:chr5:4336437-4336328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:65-179
               
               
               Cow position:chr5:70353838-70353953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:65-184
               
               
               Cow position:chr5:47323607-47323489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:65-184
               
               
               Cow position:chr5:57150812-57150691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:66-183
               
               
               Cow position:chr5:56287358-56287475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:94
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:66-184
               
               
               Cow position:chr5:28224596-28224479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:67-168
               
               
               Cow position:chr5:17644485-17644586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:86
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:67-182
               
               
               Cow position:chr5:30638435-30638551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:67-183
               
               
               Cow position:chr5:41981511-41981399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:68-183
               
               
               Cow position:chr5:63656621-63656503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:96
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:69-183
               
               
               Cow position:chr5:53710548-53710662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:93
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:69-191
               
               
               Cow position:chr5:34463439-34463559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:95
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:69-216
               
               
               Cow position:chr5:70728768-70728623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:70-169
               
               
               Cow position:chr5:38418656-38418558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:84
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:71-203
               
               
               Cow position:chr5:2851729-2851603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:74-182
               
               
               Cow position:chr5:6528821-6528711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:93
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:1-150
               
               
               Cow position:chr6:66302388-66302532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):26, 7

               
               
               Conread position:1-184
               
               
               Cow position:chr6:11246987-11246806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):133, 7

               
               
               Conread position:3-148
               
               
               Cow position:chr6:16137549-16137695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:3-155
               
               
               Cow position:chr6:14263671-14263822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):134, 76

               
               
               Conread position:3-161
               
               
               Cow position:chr6:43906463-43906621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-162
               
               
               Cow position:chr6:17412355-17412505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:3-163
               
               
               Cow position:chr6:31471297-31471136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:3-169
               
               
               Cow position:chr6:38641712-38641545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):143, 68

               
               
               Conread position:3-176
               
               
               Cow position:chr6:55518095-55517923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:3-176
               
               
               Cow position:chr6:58666601-58666771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:3-177
               
               
               Cow position:chr6:17705052-17704878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-180
               
               
               Cow position:chr6:35842878-35842704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:3-181
               
               
               Cow position:chr6:16261999-16261821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-181
               
               
               Cow position:chr6:42728864-42728688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:3-181
               
               
               Cow position:chr6:54365111-54365285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr6:4468984-4468809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr6:12091768-12091952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr6:18447297-18447475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr6:19045846-19045663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr6:21587216-21587389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr6:23058432-23058252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr6:24110502-24110323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):154, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr6:24536308-24536491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr6:41375988-41375813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr6:42567714-42567533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr6:43345222-43345401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr6:48379393-48379573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr6:50863165-50862983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr6:51835616-51835441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr6:54846058-54846238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr6:57295950-57295770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr6:60121378-60121559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr6:62079136-62078963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr6:62707505-62707686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr6:62724776-62724596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr6:64428976-64429155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr6:66259955-66259770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr6:66434172-66433991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):116, 144

               
               
               Conread position:3-183
               
               
               Cow position:chr6:67728596-67728416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-188
               
               
               Cow position:chr6:36570685-36570498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):7, 158

               
               
               Conread position:3-189
               
               
               Cow position:chr6:44706880-44706693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-191
               
               
               Cow position:chr6:24183338-24183526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-191
               
               
               Cow position:chr6:54849149-54848961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-191
               
               
               Cow position:chr6:55548316-55548501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:3-191
               
               
               Cow position:chr6:65534950-65535138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-205
               
               
               Cow position:chr6:22204806-22205007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):180, 0

               
               
               Conread position:4-178
               
               
               Cow position:chr6:49173338-49173512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:5-167
               
               
               Cow position:chr6:57299986-57299815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:5-183
               
               
               Cow position:chr6:445544-445364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:5-191
               
               
               Cow position:chr6:21184007-21184190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):54, 64

               
               
               Conread position:5-191
               
               
               Cow position:chr6:25773003-25773183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:7-138
               
               
               Cow position:chr6:67211709-67211839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:99
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:7-183
               
               
               Cow position:chr6:34475344-34475520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):72, 48

               
               
               Conread position:7-187
               
               
               Cow position:chr6:49686034-49685858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:8-125
               
               
               Cow position:chr6:30688296-30688413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-129
               
               
               Cow position:chr6:23381453-23381574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:97
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-134
               
               
               Cow position:chr6:16016248-16016123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:8-135
               
               
               Cow position:chr6:55945743-55945875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-138
               
               
               Cow position:chr6:12099477-12099601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-138
               
               
               Cow position:chr6:57546013-57546143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-143
               
               
               Cow position:chr6:54406589-54406719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-144
               
               
               Cow position:chr6:27219379-27219247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:8-144
               
               
               Cow position:chr6:68816384-68816246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-145
               
               
               Cow position:chr6:16627945-16627813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):8, 48

               
               
               Conread position:8-148
               
               
               Cow position:chr6:34463378-34463512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:112
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-149
               
               
               Cow position:chr6:4699918-4699782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-149
               
               
               Cow position:chr6:7291524-7291390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:8-149
               
               
               Cow position:chr6:8726890-8726752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:8-149
               
               
               Cow position:chr6:28559753-28559612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):90, 63

               
               
               Conread position:8-153
               
               
               Cow position:chr6:24903362-24903507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-159
               
               
               Cow position:chr6:31847031-31847176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-161
               
               
               Cow position:chr6:34076376-34076224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):109, 46

               
               
               Conread position:8-164
               
               
               Cow position:chr6:17404779-17404620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):51, 114

               
               
               Conread position:8-167
               
               
               Cow position:chr6:21052233-21052393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:8-167
               
               
               Cow position:chr6:36939087-36938924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-168
               
               
               Cow position:chr6:32006243-32006399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-170
               
               
               Cow position:chr6:37692963-37692804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:8-170
               
               
               Cow position:chr6:57467812-57467650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-171
               
               
               Cow position:chr6:32867008-32867166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):146, 30

               
               
               Conread position:8-171
               
               
               Cow position:chr6:60186441-60186610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-172
               
               
               Cow position:chr6:62805858-62805694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-173
               
               
               Cow position:chr6:3937000-3936835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):52, 144

               
               
               Conread position:8-173
               
               
               Cow position:chr6:61644643-61644808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-174
               
               
               Cow position:chr6:16411826-16411661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):160, 148

               
               
               Conread position:8-174
               
               
               Cow position:chr6:26054687-26054855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:8-174
               
               
               Cow position:chr6:45159842-45160008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-175
               
               
               Cow position:chr6:633030-633204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:8-176
               
               
               Cow position:chr6:50682086-50682250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:8-176
               
               
               Cow position:chr6:55282077-55282246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):46, 64

               
               
               Conread position:8-177
               
               
               Cow position:chr6:120453-120294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:8-177
               
               
               Cow position:chr6:33302609-33302444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:8-178
               
               
               Cow position:chr6:8125542-8125372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-178
               
               
               Cow position:chr6:8186974-8187144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-178
               
               
               Cow position:chr6:23401782-23401946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr6:2078603-2078770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr6:6996686-6996853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr6:9718704-9718869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr6:19996828-19996659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:8-180
               
               
               Cow position:chr6:45094791-45094610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr6:13742200-13742031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr6:15243052-15242879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr6:19563266-19563441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr6:22850039-22850212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):75, 86

               
               
               Conread position:8-181
               
               
               Cow position:chr6:39415038-39414866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):123, 47

               
               
               Conread position:8-181
               
               
               Cow position:chr6:41014761-41014936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr6:47151031-47150861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):165, 47

               
               
               Conread position:8-181
               
               
               Cow position:chr6:50984438-50984265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):61, 80

               
               
               Conread position:8-181
               
               
               Cow position:chr6:67574603-67574431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr6:1870984-1871156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr6:5330627-5330454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr6:6614838-6614662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):75, 46

               
               
               Conread position:8-182
               
               
               Cow position:chr6:15305784-15305613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr6:22876715-22876889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr6:32336252-32336068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr6:38207273-38207448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):41, 11

               
               
               Conread position:8-182
               
               
               Cow position:chr6:48988647-48988472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr6:60740223-60740056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr6:67451155-67451329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr6:3952734-3952559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr6:6201646-6201465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr6:6264865-6264693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):139, 46

               
               
               Conread position:8-183
               
               
               Cow position:chr6:6724722-6724547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):49, 140

               
               
               Conread position:8-183
               
               
               Cow position:chr6:7539786-7539616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr6:12669311-12669141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):55, 85

               
               
               Conread position:8-183
               
               
               Cow position:chr6:13565300-13565129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr6:17313951-17313776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):47, 113

               
               
               Conread position:8-183
               
               
               Cow position:chr6:32126265-32126097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr6:33510002-33509830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr6:34380603-34380774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):39, 52

               
               
               Conread position:8-183
               
               
               Cow position:chr6:38610187-38610009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):84, 55

               
               
               Conread position:8-183
               
               
               Cow position:chr6:41733848-41733667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr6:43134727-43134898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):49, 17

               
               
               Conread position:8-183
               
               
               Cow position:chr6:47245995-47245821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):91, 47

               
               
               Conread position:8-183
               
               
               Cow position:chr6:50090858-50090683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr6:57072637-57072463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr6:61631392-61631568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):72, 85

               
               
               Conread position:8-184
               
               
               Cow position:chr6:611756-611590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr6:4691752-4691935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):46, 108

               
               
               Conread position:8-184
               
               
               Cow position:chr6:10176086-10176262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr6:15300627-15300789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr6:15446980-15447158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr6:15937639-15937815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr6:18677495-18677658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr6:19293011-19292841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr6:19696022-19695849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):150, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr6:21535253-21535077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):154, 47

               
               
               Conread position:8-184
               
               
               Cow position:chr6:24339502-24339322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):10, 80

               
               
               Conread position:8-184
               
               
               Cow position:chr6:24514321-24514506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr6:24781338-24781515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):44, 108

               
               
               Conread position:8-184
               
               
               Cow position:chr6:30895777-30895953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):168, 69

               
               
               Conread position:8-184
               
               
               Cow position:chr6:33450764-33450930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr6:35990026-35990196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):140, 45

               
               
               Conread position:8-184
               
               
               Cow position:chr6:37395190-37395361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):108, 48

               
               
               Conread position:8-184
               
               
               Cow position:chr6:42483628-42483455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr6:43787695-43787871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr6:47305555-47305381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr6:47959021-47958855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):67, 8

               
               
               Conread position:8-184
               
               
               Cow position:chr6:50467351-50467175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr6:57079639-57079463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr6:61514985-61515148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):12, 31

               
               
               Conread position:8-184
               
               
               Cow position:chr6:62437630-62437454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr6:65264338-65264502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr6:66947610-66947778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-185
               
               
               Cow position:chr6:8688637-8688808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-185
               
               
               Cow position:chr6:36808989-36809168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):68, 86

               
               
               Conread position:8-185
               
               
               Cow position:chr6:58725580-58725409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-188
               
               
               Cow position:chr6:56061876-56061696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr6:19446466-19446286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):125, 142

               
               
               Conread position:8-191
               
               
               Cow position:chr6:54127608-54127780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr6:62670084-62669898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr6:67187894-67187716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):157, 52

               
               
               Conread position:8-195
               
               
               Cow position:chr6:28561955-28562140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):185, 82

               
               
               Conread position:8-201
               
               
               Cow position:chr6:1429847-1429664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:8-201
               
               
               Cow position:chr6:60118355-60118174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-201
               
               
               Cow position:chr6:64432146-64431961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):143, 37

               
               
               Conread position:8-205
               
               
               Cow position:chr6:45388534-45388346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):179, 24

               
               
               Conread position:8-207
               
               
               Cow position:chr6:30983727-30983533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):57, 29

               
               
               Conread position:8-214
               
               
               Cow position:chr6:59297258-59297064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):174, 47

               
               
               Conread position:9-142
               
               
               Cow position:chr6:59101107-59101240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:9-159
               
               
               Cow position:chr6:10225438-10225591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):51, 74

               
               
               Conread position:9-175
               
               
               Cow position:chr6:26005978-26005812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:9-181
               
               
               Cow position:chr6:51529973-51530145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:9-183
               
               
               Cow position:chr6:22525538-22525371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:9-184
               
               
               Cow position:chr6:47356038-47355863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):40, 28

               
               
               Conread position:9-189
               
               
               Cow position:chr6:59546277-59546096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):167, 0

               
               
               Conread position:9-191
               
               
               Cow position:chr6:1103528-1103706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:9-191
               
               
               Cow position:chr6:12965068-12964885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):83, 5

               
               
               Conread position:9-191
               
               
               Cow position:chr6:27851496-27851675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):161, 51

               
               
               Conread position:9-192
               
               
               Cow position:chr6:32268675-32268852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:10-145
               
               
               Cow position:chr6:14152678-14152812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):58, 17

               
               
               Conread position:10-173
               
               
               Cow position:chr6:35984923-35985086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:10-179
               
               
               Cow position:chr6:2547466-2547300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:10-179
               
               
               Cow position:chr6:22215251-22215425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):44, 156

               
               
               Conread position:10-182
               
               
               Cow position:chr6:60517049-60516868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 142

               
               
               Conread position:10-182
               
               
               Cow position:chr6:61168976-61168797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:10-184
               
               
               Cow position:chr6:30825565-30825726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:10-184
               
               
               Cow position:chr6:53932634-53932809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):147, 73

               
               
               Conread position:10-185
               
               
               Cow position:chr6:13367493-13367324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:10-191
               
               
               Cow position:chr6:21061680-21061848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:11-128
               
               
               Cow position:chr6:49824882-49824998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:93
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:11-138
               
               
               Cow position:chr6:31928849-31928722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-145
               
               
               Cow position:chr6:10163884-10163744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:11-145
               
               
               Cow position:chr6:21175544-21175416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:109
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:11-147
               
               
               Cow position:chr6:38853446-38853582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:11-148
               
               
               Cow position:chr6:53732195-53732057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:11-148
               
               
               Cow position:chr6:55061080-55060938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:11-150
               
               
               Cow position:chr6:4760203-4760065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:11-155
               
               
               Cow position:chr6:19936358-19936501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:11-171
               
               
               Cow position:chr6:26638602-26638440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:11-171
               
               
               Cow position:chr6:44566636-44566477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:11-175
               
               
               Cow position:chr6:54821044-54820880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-177
               
               
               Cow position:chr6:1173737-1173908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):43, 153

               
               
               Conread position:11-177
               
               
               Cow position:chr6:44541014-44540857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:11-178
               
               
               Cow position:chr6:47022769-47022606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:11-179
               
               
               Cow position:chr6:10399698-10399864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):52, 96

               
               
               Conread position:11-179
               
               
               Cow position:chr6:21470222-21470384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:11-179
               
               
               Cow position:chr6:55417323-55417483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-180
               
               
               Cow position:chr6:8369634-8369468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:11-180
               
               
               Cow position:chr6:26408292-26408461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-181
               
               
               Cow position:chr6:5445878-5445709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):141, 66

               
               
               Conread position:11-181
               
               
               Cow position:chr6:15974313-15974477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-181
               
               
               Cow position:chr6:21004890-21004719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):62, 160

               
               
               Conread position:11-181
               
               
               Cow position:chr6:28483227-28483058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):129, 44

               
               
               Conread position:11-181
               
               
               Cow position:chr6:36225320-36225151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:11-181
               
               
               Cow position:chr6:55296882-55297052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-181
               
               
               Cow position:chr6:60852423-60852601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):48, 133

               
               
               Conread position:11-182
               
               
               Cow position:chr6:12761490-12761321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr6:35726300-35726136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):80, 44

               
               
               Conread position:11-183
               
               
               Cow position:chr6:16380757-16380585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr6:19754868-19755040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr6:27239794-27239965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):52, 40

               
               
               Conread position:11-183
               
               
               Cow position:chr6:44867336-44867502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):64, 24

               
               
               Conread position:11-183
               
               
               Cow position:chr6:47783077-47782902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr6:48010314-48010482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):64, 83

               
               
               Conread position:11-183
               
               
               Cow position:chr6:63251711-63251882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr6:15058585-15058416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr6:34569626-34569447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):54, 86

               
               
               Conread position:11-184
               
               
               Cow position:chr6:44078725-44078558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr6:58370957-58370798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:11-185
               
               
               Cow position:chr6:46558264-46558096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:11-185
               
               
               Cow position:chr6:53711613-53711441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-186
               
               
               Cow position:chr6:24491244-24491066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):110, 43

               
               
               Conread position:11-191
               
               
               Cow position:chr6:28088837-28089015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:11-191
               
               
               Cow position:chr6:53841293-53841473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-196
               
               
               Cow position:chr6:17173038-17172855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):164, 112

               
               
               Conread position:11-210
               
               
               Cow position:chr6:59015370-59015558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):174, 53

               
               
               Conread position:12-140
               
               
               Cow position:chr6:38640443-38640317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:12-140
               
               
               Cow position:chr6:48520849-48520972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:12-147
               
               
               Cow position:chr6:48278683-48278812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:12-150
               
               
               Cow position:chr6:8326007-8325870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):37, 41

               
               
               Conread position:12-155
               
               
               Cow position:chr6:18440266-18440409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-155
               
               
               Cow position:chr6:19264289-19264430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:12-155
               
               
               Cow position:chr6:48097391-48097532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):103, 50

               
               
               Conread position:12-156
               
               
               Cow position:chr6:33290180-33290036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-156
               
               
               Cow position:chr6:62224633-62224489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):65, 26

               
               
               Conread position:12-161
               
               
               Cow position:chr6:53811795-53811645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:12-168
               
               
               Cow position:chr6:58697420-58697576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-172
               
               
               Cow position:chr6:48449027-48448876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:12-177
               
               
               Cow position:chr6:44543938-44544101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:12-178
               
               
               Cow position:chr6:17954038-17954198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):66, 112

               
               
               Conread position:12-178
               
               
               Cow position:chr6:60777981-60777813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):145, 59

               
               
               Conread position:12-179
               
               
               Cow position:chr6:19225180-19225333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-181
               
               
               Cow position:chr6:12928349-12928189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-181
               
               
               Cow position:chr6:17794546-17794721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:12-181
               
               
               Cow position:chr6:36163955-36163786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr6:1941625-1941790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):123, 52

               
               
               Conread position:12-182
               
               
               Cow position:chr6:5609233-5609403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):58, 147

               
               
               Conread position:12-182
               
               
               Cow position:chr6:10105771-10105937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr6:15243471-15243297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr6:20076006-20075835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):52, 73

               
               
               Conread position:12-182
               
               
               Cow position:chr6:24776348-24776180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr6:44194344-44194507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr6:50504665-50504498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr6:60143990-60144156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):155, 42

               
               
               Conread position:12-183
               
               
               Cow position:chr6:8366023-8365852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr6:10039935-10039764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr6:14471574-14471404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):154, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr6:18608601-18608771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr6:33150084-33150251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr6:56986439-56986607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr6:1704006-1703844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr6:5095330-5095502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr6:38441389-38441215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):48, 150

               
               
               Conread position:12-184
               
               
               Cow position:chr6:40774125-40774292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):23, 44

               
               
               Conread position:12-184
               
               
               Cow position:chr6:61681287-61681117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:12-185
               
               
               Cow position:chr6:46173049-46173219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:12-185
               
               
               Cow position:chr6:61883964-61884128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):60, 70

               
               
               Conread position:12-189
               
               
               Cow position:chr6:55044431-55044607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:12-191
               
               
               Cow position:chr6:1769985-1770165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:12-191
               
               
               Cow position:chr6:60850908-60850733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:12-201
               
               
               Cow position:chr6:6060362-6060548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):64, 11

               
               
               Conread position:12-209
               
               
               Cow position:chr6:65903417-65903608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):31, 39

               
               
               Conread position:13-183
               
               
               Cow position:chr6:21514397-21514567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):6, 26

               
               
               Conread position:13-183
               
               
               Cow position:chr6:27888555-27888392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:13-184
               
               
               Cow position:chr6:50883470-50883638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):144, 41

               
               
               Conread position:14-131
               
               
               Cow position:chr6:47989633-47989518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):20, 43

               
               
               Conread position:14-136
               
               
               Cow position:chr6:57935367-57935485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:101
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:14-138
               
               
               Cow position:chr6:40833811-40833929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:102
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:14-146
               
               
               Cow position:chr6:54840293-54840430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:14-178
               
               
               Cow position:chr6:7801188-7801348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:14-182
               
               
               Cow position:chr6:23696206-23696042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:14-182
               
               
               Cow position:chr6:59603008-59603166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:14-183
               
               
               Cow position:chr6:8600214-8600041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):37, 9

               
               
               Conread position:14-183
               
               
               Cow position:chr6:14056259-14056429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:14-183
               
               
               Cow position:chr6:35318926-35319093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:14-184
               
               
               Cow position:chr6:9832409-9832246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:14-184
               
               
               Cow position:chr6:35181047-35181217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-184
               
               
               Cow position:chr6:37149392-37149229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:14-184
               
               
               Cow position:chr6:50771153-50771319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:14-187
               
               
               Cow position:chr6:16700461-16700298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:14-191
               
               
               Cow position:chr6:14914027-14914202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:15-176
               
               
               Cow position:chr6:17816785-17816946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:15-186
               
               
               Cow position:chr6:69153618-69153447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:16-167
               
               
               Cow position:chr6:12631702-12631558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:18-179
               
               
               Cow position:chr6:36189903-36189743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:18-179
               
               
               Cow position:chr6:52478208-52478366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:18-183
               
               
               Cow position:chr6:28852179-28852014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:18-183
               
               
               Cow position:chr6:32453590-32453426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):57, 90

               
               
               Conread position:18-183
               
               
               Cow position:chr6:59104801-59104640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):123, 20

               
               
               Conread position:18-184
               
               
               Cow position:chr6:2585144-2584982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:18-184
               
               
               Cow position:chr6:21467062-21467224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:18-191
               
               
               Cow position:chr6:21475930-21475760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:19-149
               
               
               Cow position:chr6:36891857-36891726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:19-149
               
               
               Cow position:chr6:67963853-67963981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:19-156
               
               
               Cow position:chr6:14150175-14150312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:19-161
               
               
               Cow position:chr6:55450136-55449996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-161
               
               
               Cow position:chr6:66293689-66293547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:19-164
               
               
               Cow position:chr6:6850526-6850381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):112, 36

               
               
               Conread position:19-176
               
               
               Cow position:chr6:57571680-57571527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-177
               
               
               Cow position:chr6:58304618-58304461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:19-182
               
               
               Cow position:chr6:52025161-52025330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:19-183
               
               
               Cow position:chr6:67323508-67323350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-184
               
               
               Cow position:chr6:16287861-16288018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:19-184
               
               
               Cow position:chr6:48469213-48469040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:19-197
               
               
               Cow position:chr6:59301581-59301762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:19-198
               
               
               Cow position:chr6:16352161-16352326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:19-201
               
               
               Cow position:chr6:15587390-15587571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):165, 0

               
               
               Conread position:19-201
               
               
               Cow position:chr6:18144412-18144215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):36, 190

               
               
               Conread position:20-179
               
               
               Cow position:chr6:31865296-31865141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:20-181
               
               
               Cow position:chr6:2153395-2153556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:20-182
               
               
               Cow position:chr6:8468865-8468707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:20-184
               
               
               Cow position:chr6:143177-143334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:20-184
               
               
               Cow position:chr6:17997116-17997279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):43, 29

               
               
               Conread position:20-184
               
               
               Cow position:chr6:57089405-57089238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):137, 51

               
               
               Conread position:20-191
               
               
               Cow position:chr6:67282092-67281927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:21-181
               
               
               Cow position:chr6:67689411-67689572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):17, 99

               
               
               Conread position:21-183
               
               
               Cow position:chr6:48436032-48435875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:25-183
               
               
               Cow position:chr6:55502969-55502807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:26-181
               
               
               Cow position:chr6:58076591-58076436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:26-184
               
               
               Cow position:chr6:21590900-21590747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:26-191
               
               
               Cow position:chr6:36643289-36643459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):36, 82

               
               
               Conread position:27-184
               
               
               Cow position:chr6:14063105-14063269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:30-184
               
               
               Cow position:chr6:35171798-35171645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):58, 25

               
               
               Conread position:31-184
               
               
               Cow position:chr6:28148448-28148294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):131, 74

               
               
               Conread position:31-184
               
               
               Cow position:chr6:40032377-40032231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:35-185
               
               
               Cow position:chr6:17548777-17548935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:36-171
               
               
               Cow position:chr6:67305257-67305122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):34, 53

               
               
               Conread position:37-183
               
               
               Cow position:chr6:8731599-8731449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):120, 73

               
               
               Conread position:38-179
               
               
               Cow position:chr6:53346159-53346019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:41-161
               
               
               Cow position:chr6:139463-139581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:95
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:41-184
               
               
               Cow position:chr6:40878964-40878817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:42-181
               
               
               Cow position:chr6:12501032-12500885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:42-183
               
               
               Cow position:chr6:3592579-3592444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:42-191
               
               
               Cow position:chr6:24004720-24004569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:43-184
               
               
               Cow position:chr6:60057477-60057615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):6, 46

               
               
               Conread position:45-177
               
               
               Cow position:chr6:603696-603566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:46-170
               
               
               Cow position:chr6:61575997-61575874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:47-184
               
               
               Cow position:chr6:67214925-67214789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:47-191
               
               
               Cow position:chr6:9750882-9751021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:47-207
               
               
               Cow position:chr6:37603742-37603585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):107, 17

               
               
               Conread position:48-148
               
               
               Cow position:chr6:50882757-50882657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:86
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-149
               
               
               Cow position:chr6:36516136-36516035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:83
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-180
               
               
               Cow position:chr6:16764470-16764604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):107, 127

               
               
               Conread position:48-181
               
               
               Cow position:chr6:55535576-55535704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):127, 67

               
               
               Conread position:48-183
               
               
               Cow position:chr6:67456894-67456759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr6:21066707-21066844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr6:60451604-60451467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr6:66531648-66531781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:48-189
               
               
               Cow position:chr6:47676188-47676050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:48-191
               
               
               Cow position:chr6:35993759-35993617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:48-193
               
               
               Cow position:chr6:18048844-18048993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):22, 46

               
               
               Conread position:48-198
               
               
               Cow position:chr6:29852890-29853039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:48-239
               
               
               Cow position:chr6:32184871-32185060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):30, 130

               
               
               Conread position:49-179
               
               
               Cow position:chr6:16738534-16738405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:49-181
               
               
               Cow position:chr6:62478695-62478827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:49-182
               
               
               Cow position:chr6:47799468-47799335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:49-191
               
               
               Cow position:chr6:49096279-49096418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:49-192
               
               
               Cow position:chr6:47339181-47339324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:51-182
               
               
               Cow position:chr6:19508013-19508146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:51-184
               
               
               Cow position:chr6:19519546-19519415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:51-184
               
               
               Cow position:chr6:21235216-21235082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:51-219
               
               
               Cow position:chr6:28900499-28900330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):156, 0

               
               
               Conread position:53-176
               
               
               Cow position:chr6:35654379-35654502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:53-179
               
               
               Cow position:chr6:47841723-47841596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:98
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:53-191
               
               
               Cow position:chr6:37199367-37199494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:55-184
               
               
               Cow position:chr6:60516793-60516665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:99
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:56-150
               
               
               Cow position:chr6:61182686-61182780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:80
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-174
               
               
               Cow position:chr6:35702177-35702295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr6:582105-582232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr6:16316484-16316353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:56-187
               
               
               Cow position:chr6:35103160-35103294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:56-191
               
               
               Cow position:chr6:37783568-37783433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-181
               
               
               Cow position:chr6:34195989-34196107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:64-184
               
               
               Cow position:chr6:16191831-16191718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:64-184
               
               
               Cow position:chr6:54867677-54867557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-184
               
               
               Cow position:chr6:57287503-57287622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:64-184
               
               
               Cow position:chr6:59069460-59069584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:97
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:64-191
               
               
               Cow position:chr6:47575066-47574939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:96
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-191
               
               
               Cow position:chr6:60667571-60667446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):6, 50

               
               
               Conread position:64-191
               
               
               Cow position:chr6:67805855-67805982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-192
               
               
               Cow position:chr6:36470402-36470530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:65-184
               
               
               Cow position:chr6:6343588-6343466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):68, 11

               
               
               Conread position:65-184
               
               
               Cow position:chr6:23656616-23656733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:65-184
               
               
               Cow position:chr6:54573419-54573299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:66-182
               
               
               Cow position:chr6:54607009-54606895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:97
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:67-184
               
               
               Cow position:chr6:19131587-19131470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:95
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:68-184
               
               
               Cow position:chr6:19681369-19681485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:68-184
               
               
               Cow position:chr6:42565843-42565728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:68-184
               
               
               Cow position:chr6:63047748-63047632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:70-179
               
               
               Cow position:chr6:5957595-5957703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:89
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:71-184
               
               
               Cow position:chr6:16707165-16707055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:94
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:72-180
               
               
               Cow position:chr6:107273-107381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:74-184
               
               
               Cow position:chr6:37463172-37463062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:74-201
               
               
               Cow position:chr6:8787887-8788013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:98
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:80-193
               
               
               Cow position:chr6:17527445-17527557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:91
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:83-184
               
               
               Cow position:chr6:61142421-61142523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:1-149
               
               
               Cow position:chr7:37394520-37394375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:1-172
               
               
               Cow position:chr7:15559905-15559741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:1-172
               
               
               Cow position:chr7:40688164-40687996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:1-179
               
               
               Cow position:chr7:519304-519478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):87, 7

               
               
               Conread position:1-181
               
               
               Cow position:chr7:16022513-16022340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:1-183
               
               
               Cow position:chr7:18388173-18388356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:151
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:1-185
               
               
               Cow position:chr7:29279798-29279978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):10, 19

               
               
               Conread position:1-191
               
               
               Cow position:chr7:17782471-17782658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):134, 7

               
               
               Conread position:2-145
               
               
               Cow position:chr7:21239903-21240046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-184
               
               
               Cow position:chr7:4812239-4812058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):9, 53

               
               
               Conread position:2-199
               
               
               Cow position:chr7:14450557-14450358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):19, 153

               
               
               Conread position:2-213
               
               
               Cow position:chr7:68540376-68540585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):191, 0

               
               
               Conread position:3-134
               
               
               Cow position:chr7:15861535-15861404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):13, 54

               
               
               Conread position:3-140
               
               
               Cow position:chr7:45070075-45070211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):71, 19

               
               
               Conread position:3-148
               
               
               Cow position:chr7:26896572-26896427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-149
               
               
               Cow position:chr7:65619217-65619355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:3-156
               
               
               Cow position:chr7:8235102-8234949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-177
               
               
               Cow position:chr7:38084535-38084367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:3-177
               
               
               Cow position:chr7:47547625-47547458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:3-178
               
               
               Cow position:chr7:25786061-25785887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):64, 41

               
               
               Conread position:3-179
               
               
               Cow position:chr7:15650623-15650800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:3-179
               
               
               Cow position:chr7:21228329-21228501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):28, 8

               
               
               Conread position:3-179
               
               
               Cow position:chr7:44993820-44993648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:3-182
               
               
               Cow position:chr7:8821691-8821518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:3-182
               
               
               Cow position:chr7:29302134-29302313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-182
               
               
               Cow position:chr7:43450764-43450585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:149
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr7:535500-535673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr7:9781501-9781681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr7:20411303-20411486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):148, 11

               
               
               Conread position:3-183
               
               
               Cow position:chr7:32284144-32283965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr7:41729087-41729261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr7:64228669-64228849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr7:64268771-64268951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-184
               
               
               Cow position:chr7:40305036-40305211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:3-184
               
               
               Cow position:chr7:46952255-46952074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-188
               
               
               Cow position:chr7:8303396-8303581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-191
               
               
               Cow position:chr7:3304799-3304612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:3-205
               
               
               Cow position:chr7:25083905-25083703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-205
               
               
               Cow position:chr7:25464789-25464587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-215
               
               
               Cow position:chr7:67099556-67099343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):190, 172

               
               
               Conread position:3-216
               
               
               Cow position:chr7:63834627-63834840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):185, 172

               
               
               Conread position:5-131
               
               
               Cow position:chr7:21175041-21174908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:5-183
               
               
               Cow position:chr7:31504067-31503890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:5-184
               
               
               Cow position:chr7:31315519-31315351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):163, 51

               
               
               Conread position:5-184
               
               
               Cow position:chr7:39144908-39144738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:5-201
               
               
               Cow position:chr7:33698171-33697981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:7-161
               
               
               Cow position:chr7:43484317-43484464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:7-161
               
               
               Cow position:chr7:53271224-53271077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:7-183
               
               
               Cow position:chr7:63300415-63300243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:7-184
               
               
               Cow position:chr7:19797710-19797886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:7-184
               
               
               Cow position:chr7:28096104-28095916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):28, 157

               
               
               Conread position:7-184
               
               
               Cow position:chr7:39947034-39947207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:7-184
               
               
               Cow position:chr7:48563267-48563432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:7-184
               
               
               Cow position:chr7:64572844-64573017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):151, 45

               
               
               Conread position:8-118
               
               
               Cow position:chr7:12342778-12342888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:88
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-123
               
               
               Cow position:chr7:13478587-13478705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:96
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-123
               
               
               Cow position:chr7:19241908-19242024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:95
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):45, 70

               
               
               Conread position:8-124
               
               
               Cow position:chr7:9093563-9093679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:98
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):109, 27

               
               
               Conread position:8-130
               
               
               Cow position:chr7:33805304-33805186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:8-134
               
               
               Cow position:chr7:35651511-35651638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:8-135
               
               
               Cow position:chr7:51673079-51673205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:8-136
               
               
               Cow position:chr7:40710471-40710348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-137
               
               
               Cow position:chr7:30290728-30290856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:8-144
               
               
               Cow position:chr7:23609596-23609459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:8-146
               
               
               Cow position:chr7:40344663-40344794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-147
               
               
               Cow position:chr7:5724390-5724259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):126, 45

               
               
               Conread position:8-147
               
               
               Cow position:chr7:9077593-9077731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):95, 47

               
               
               Conread position:8-147
               
               
               Cow position:chr7:58615482-58615344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr7:11946095-11945961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr7:49068623-49068763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-149
               
               
               Cow position:chr7:48616153-48616298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-149
               
               
               Cow position:chr7:53433837-53433694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:8-154
               
               
               Cow position:chr7:10945008-10944861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:8-155
               
               
               Cow position:chr7:11784830-11784973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:8-155
               
               
               Cow position:chr7:12484517-12484370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-155
               
               
               Cow position:chr7:17991094-17990953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-155
               
               
               Cow position:chr7:32920384-32920530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):70, 76

               
               
               Conread position:8-156
               
               
               Cow position:chr7:9858567-9858425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-156
               
               
               Cow position:chr7:11511934-11511794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:8-156
               
               
               Cow position:chr7:14796166-14796324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-156
               
               
               Cow position:chr7:16285360-16285507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:8-156
               
               
               Cow position:chr7:26309451-26309599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-156
               
               
               Cow position:chr7:31885810-31885663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:8-156
               
               
               Cow position:chr7:32693325-32693475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:8-159
               
               
               Cow position:chr7:53862723-53862579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:8-161
               
               
               Cow position:chr7:18958325-18958476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:8-161
               
               
               Cow position:chr7:39528577-39528720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-161
               
               
               Cow position:chr7:42460882-42460731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:8-161
               
               
               Cow position:chr7:47523427-47523282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:8-163
               
               
               Cow position:chr7:13606673-13606518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):60, 146

               
               
               Conread position:8-167
               
               
               Cow position:chr7:43077620-43077459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):62, 27

               
               
               Conread position:8-168
               
               
               Cow position:chr7:23819110-23818953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):13, 53

               
               
               Conread position:8-168
               
               
               Cow position:chr7:48020640-48020486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-171
               
               
               Cow position:chr7:7475891-7476058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-171
               
               
               Cow position:chr7:10885113-10884952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:8-173
               
               
               Cow position:chr7:15570252-15570091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-174
               
               
               Cow position:chr7:17000944-17000778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-175
               
               
               Cow position:chr7:4060487-4060316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):62, 87

               
               
               Conread position:8-176
               
               
               Cow position:chr7:12918367-12918527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-176
               
               
               Cow position:chr7:58301725-58301889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-177
               
               
               Cow position:chr7:25722454-25722617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-177
               
               
               Cow position:chr7:32259983-32260147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):129, 47

               
               
               Conread position:8-177
               
               
               Cow position:chr7:47849476-47849297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-177
               
               
               Cow position:chr7:53221621-53221791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr7:6781612-6781435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr7:21573785-21573618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):79, 47

               
               
               Conread position:8-179
               
               
               Cow position:chr7:36665543-36665372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):46, 108

               
               
               Conread position:8-179
               
               
               Cow position:chr7:39021992-39022163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr7:53053190-53053356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):24, 48

               
               
               Conread position:8-180
               
               
               Cow position:chr7:38429502-38429665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-180
               
               
               Cow position:chr7:53834373-53834544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):165, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr7:19466043-19466205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr7:25393513-25393348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):102, 43

               
               
               Conread position:8-181
               
               
               Cow position:chr7:25415612-25415433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):149, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr7:40310845-40311019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):154, 54

               
               
               Conread position:8-181
               
               
               Cow position:chr7:49941916-49942085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):154, 95

               
               
               Conread position:8-181
               
               
               Cow position:chr7:58862661-58862836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):61, 37

               
               
               Conread position:8-182
               
               
               Cow position:chr7:146927-146752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr7:4129572-4129736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr7:6469841-6469665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):73, 53

               
               
               Conread position:8-182
               
               
               Cow position:chr7:6821262-6821089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr7:7510636-7510809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr7:11176520-11176684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr7:12494906-12495076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr7:31523761-31523589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr7:32946281-32946112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr7:35088875-35088701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr7:39514450-39514277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):52, 64

               
               
               Conread position:8-182
               
               
               Cow position:chr7:39516300-39516473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):52, 64

               
               
               Conread position:8-182
               
               
               Cow position:chr7:44574435-44574266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):43, 49

               
               
               Conread position:8-182
               
               
               Cow position:chr7:46116419-46116595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr7:50900458-50900644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):47, 15

               
               
               Conread position:8-182
               
               
               Cow position:chr7:52591785-52591954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr7:52839407-52839574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr7:54090702-54090536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):64, 99

               
               
               Conread position:8-182
               
               
               Cow position:chr7:63772266-63772093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr7:11994965-11995142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):44, 147

               
               
               Conread position:8-183
               
               
               Cow position:chr7:14482282-14482109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr7:23624450-23624623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr7:24865943-24866119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr7:35642368-35642542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr7:38361020-38361194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):158, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr7:42335535-42335369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):160, 83

               
               
               Conread position:8-183
               
               
               Cow position:chr7:42432092-42431903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):50, 24

               
               
               Conread position:8-183
               
               
               Cow position:chr7:43085092-43084919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr7:43109322-43109495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr7:43185003-43184828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):115, 52

               
               
               Conread position:8-183
               
               
               Cow position:chr7:46963957-46963782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr7:50866948-50867122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr7:53202930-53202755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr7:53579173-53579348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):89, 120

               
               
               Conread position:8-183
               
               
               Cow position:chr7:68172942-68173120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):150, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr7:168443-168624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr7:3336346-3336508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr7:4582516-4582686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr7:8089377-8089207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):124, 48

               
               
               Conread position:8-184
               
               
               Cow position:chr7:9161455-9161634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr7:11015914-11015724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr7:14029521-14029353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):160, 47

               
               
               Conread position:8-184
               
               
               Cow position:chr7:30931768-30931931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr7:34433064-34433239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr7:35779954-35779784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr7:39093708-39093884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr7:40308302-40308477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):154, 62

               
               
               Conread position:8-184
               
               
               Cow position:chr7:40414787-40414955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr7:50565979-50566159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr7:54513193-54513363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr7:62953726-62953556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):113, 26

               
               
               Conread position:8-185
               
               
               Cow position:chr7:6706518-6706341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-185
               
               
               Cow position:chr7:23636926-23636747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):62, 147

               
               
               Conread position:8-185
               
               
               Cow position:chr7:27990463-27990639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):82, 47

               
               
               Conread position:8-185
               
               
               Cow position:chr7:31074359-31074539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):146, 71

               
               
               Conread position:8-185
               
               
               Cow position:chr7:60547454-60547624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-186
               
               
               Cow position:chr7:5343567-5343739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-188
               
               
               Cow position:chr7:5906850-5906672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-189
               
               
               Cow position:chr7:30012044-30011868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:150
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):157, 47

               
               
               Conread position:8-189
               
               
               Cow position:chr7:35754890-35754711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:8-190
               
               
               Cow position:chr7:17750626-17750806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-190
               
               
               Cow position:chr7:32692812-32692994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):39, 57

               
               
               Conread position:8-191
               
               
               Cow position:chr7:249290-249468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr7:8777425-8777243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr7:31694416-31694604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr7:33386134-33385957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr7:37651715-37651527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):60, 46

               
               
               Conread position:8-191
               
               
               Cow position:chr7:37698023-37697836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr7:48721690-48721864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr7:51019995-51019813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:147
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr7:55085875-55085691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr7:55315989-55316164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):23, 48

               
               
               Conread position:8-192
               
               
               Cow position:chr7:14535135-14534958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:8-192
               
               
               Cow position:chr7:41346814-41346999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:8-194
               
               
               Cow position:chr7:68144724-68144548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):173, 29

               
               
               Conread position:8-200
               
               
               Cow position:chr7:50442680-50442869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):169, 47

               
               
               Conread position:8-201
               
               
               Cow position:chr7:44454052-44454254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):54, 196

               
               
               Conread position:8-203
               
               
               Cow position:chr7:42943520-42943334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-203
               
               
               Cow position:chr7:57659946-57660140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):84, 177

               
               
               Conread position:8-245
               
               
               Cow position:chr7:9816215-9815980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):225, 110

               
               
               Conread position:9-148
               
               
               Cow position:chr7:39444403-39444534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:9-149
               
               
               Cow position:chr7:18016884-18016751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:9-149
               
               
               Cow position:chr7:41122056-41122190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:9-155
               
               
               Cow position:chr7:8025571-8025420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:9-155
               
               
               Cow position:chr7:44037743-44037596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:9-167
               
               
               Cow position:chr7:19329095-19329247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:9-167
               
               
               Cow position:chr7:68773973-68773824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):147, 43

               
               
               Conread position:9-181
               
               
               Cow position:chr7:46051874-46051700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:9-182
               
               
               Cow position:chr7:23552751-23552920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:9-182
               
               
               Cow position:chr7:48715071-48714898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:9-183
               
               
               Cow position:chr7:7535749-7535583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:9-183
               
               
               Cow position:chr7:52781743-52781923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:9-185
               
               
               Cow position:chr7:10945564-10945388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:142
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:9-185
               
               
               Cow position:chr7:26737127-26737305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:10-154
               
               
               Cow position:chr7:65597409-65597554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:10-164
               
               
               Cow position:chr7:34216418-34216271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:10-176
               
               
               Cow position:chr7:65325539-65325704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):150, 0

               
               
               Conread position:10-183
               
               
               Cow position:chr7:1720752-1720923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):48, 59

               
               
               Conread position:10-183
               
               
               Cow position:chr7:38347633-38347805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:10-183
               
               
               Cow position:chr7:46818285-46818451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:10-185
               
               
               Cow position:chr7:13963423-13963252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):101, 36

               
               
               Conread position:11-126
               
               
               Cow position:chr7:7461904-7462019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:94
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-127
               
               
               Cow position:chr7:40361865-40361750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:11-129
               
               
               Cow position:chr7:14497496-14497378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-130
               
               
               Cow position:chr7:35925784-35925666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:93
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:11-138
               
               
               Cow position:chr7:53000245-53000123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:11-148
               
               
               Cow position:chr7:63967971-63968116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-149
               
               
               Cow position:chr7:20535084-20534949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:11-149
               
               
               Cow position:chr7:23823286-23823422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-149
               
               
               Cow position:chr7:39017465-39017596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):79, 44

               
               
               Conread position:11-149
               
               
               Cow position:chr7:40336450-40336313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:11-150
               
               
               Cow position:chr7:23255964-23255830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:11-153
               
               
               Cow position:chr7:25859990-25860133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:11-156
               
               
               Cow position:chr7:43457459-43457609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:11-164
               
               
               Cow position:chr7:6043925-6044074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:11-167
               
               
               Cow position:chr7:44942768-44942617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-170
               
               
               Cow position:chr7:27290284-27290443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-171
               
               
               Cow position:chr7:4765051-4764900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-173
               
               
               Cow position:chr7:11884071-11884228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:11-173
               
               
               Cow position:chr7:35096810-35096972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-174
               
               
               Cow position:chr7:16219673-16219834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:11-176
               
               
               Cow position:chr7:5992504-5992339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):57, 84

               
               
               Conread position:11-178
               
               
               Cow position:chr7:15616402-15616236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:11-179
               
               
               Cow position:chr7:8658726-8658562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-179
               
               
               Cow position:chr7:15653717-15653887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:11-179
               
               
               Cow position:chr7:40484533-40484365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-180
               
               
               Cow position:chr7:30017310-30017467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:11-181
               
               
               Cow position:chr7:10559771-10559936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):33, 46

               
               
               Conread position:11-181
               
               
               Cow position:chr7:22730414-22730244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-181
               
               
               Cow position:chr7:33279776-33279952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:11-181
               
               
               Cow position:chr7:36248304-36248145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:11-181
               
               
               Cow position:chr7:37354436-37354598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:11-181
               
               
               Cow position:chr7:56880289-56880119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-181
               
               
               Cow position:chr7:58967482-58967312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr7:24631055-24630884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr7:8318425-8318602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr7:14519830-14519998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr7:32093465-32093292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):162, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr7:32549196-32549364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr7:35286434-35286597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):18, 26

               
               
               Conread position:11-183
               
               
               Cow position:chr7:37455537-37455361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr7:44496356-44496528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr7:47776076-47775904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr7:47931581-47931753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr7:59438664-59438494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):122, 64

               
               
               Conread position:11-183
               
               
               Cow position:chr7:65615983-65615811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr7:67873408-67873236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr7:2579024-2579195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr7:9137062-9136880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):41, 21

               
               
               Conread position:11-184
               
               
               Cow position:chr7:32807659-32807499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr7:33914181-33914013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr7:34464566-34464400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr7:36996570-36996404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr7:39099803-39099975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr7:42894670-42894486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):39, 153

               
               
               Conread position:11-184
               
               
               Cow position:chr7:54054809-54054631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):61, 30

               
               
               Conread position:11-185
               
               
               Cow position:chr7:28441387-28441219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-187
               
               
               Cow position:chr7:25263582-25263407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:145
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:11-189
               
               
               Cow position:chr7:7616990-7616813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):68, 105

               
               
               Conread position:11-190
               
               
               Cow position:chr7:10385093-10384915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:11-191
               
               
               Cow position:chr7:26909551-26909725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:11-191
               
               
               Cow position:chr7:39800532-39800722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):29, 171

               
               
               Conread position:11-191
               
               
               Cow position:chr7:57506574-57506749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):159, 34

               
               
               Conread position:11-191
               
               
               Cow position:chr7:61790140-61790317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:12-135
               
               
               Cow position:chr7:10466527-10466648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:12-154
               
               
               Cow position:chr7:60755614-60755760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):48, 25

               
               
               Conread position:12-155
               
               
               Cow position:chr7:8032653-8032514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):12, 20

               
               
               Conread position:12-157
               
               
               Cow position:chr7:12330015-12330157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):53, 41

               
               
               Conread position:12-161
               
               
               Cow position:chr7:32813657-32813508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-161
               
               
               Cow position:chr7:44094502-44094656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:12-164
               
               
               Cow position:chr7:8523570-8523718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-164
               
               
               Cow position:chr7:39402423-39402271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):106, 41

               
               
               Conread position:12-167
               
               
               Cow position:chr7:39518715-39518568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-176
               
               
               Cow position:chr7:29479732-29479578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:12-176
               
               
               Cow position:chr7:55060484-55060314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:12-178
               
               
               Cow position:chr7:40009042-40008877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:12-179
               
               
               Cow position:chr7:47513473-47513637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:12-181
               
               
               Cow position:chr7:48376022-48375855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:12-181
               
               
               Cow position:chr7:58330615-58330784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr7:7581654-7581821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr7:26263440-26263609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):91, 32

               
               
               Conread position:12-182
               
               
               Cow position:chr7:30154798-30154962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr7:63749268-63749432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr7:68857374-68857542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr7:3026505-3026676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr7:3160011-3159847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr7:3431152-3431323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr7:8110034-8110208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr7:8387201-8387371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr7:29682237-29682408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr7:53763380-53763543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr7:54108657-54108822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):62, 95

               
               
               Conread position:12-183
               
               
               Cow position:chr7:62542879-62542703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr7:10414926-10415092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr7:28563186-28563348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr7:37023145-37022970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr7:50166240-50166071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr7:60121765-60121593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):146, 15

               
               
               Conread position:12-184
               
               
               Cow position:chr7:68240672-68240506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:12-189
               
               
               Cow position:chr7:9068384-9068561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):89, 146

               
               
               Conread position:12-191
               
               
               Cow position:chr7:1761941-1761766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-191
               
               
               Cow position:chr7:15755230-15755411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:12-191
               
               
               Cow position:chr7:59688750-59688581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:13-181
               
               
               Cow position:chr7:40321691-40321533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:13-182
               
               
               Cow position:chr7:29505322-29505159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:13-184
               
               
               Cow position:chr7:23678138-23677968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:13-191
               
               
               Cow position:chr7:105063-104884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):136, 42

               
               
               Conread position:13-191
               
               
               Cow position:chr7:13067370-13067192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:13-191
               
               
               Cow position:chr7:51039644-51039467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:14-131
               
               
               Cow position:chr7:54037908-54038025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:93
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-150
               
               
               Cow position:chr7:48900768-48900637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:14-154
               
               
               Cow position:chr7:43853119-43853258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:14-181
               
               
               Cow position:chr7:9175688-9175522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:14-181
               
               
               Cow position:chr7:30155742-30155904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):144, 40

               
               
               Conread position:14-182
               
               
               Cow position:chr7:6116158-6116321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:14-183
               
               
               Cow position:chr7:20051257-20051429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):58, 95

               
               
               Conread position:14-183
               
               
               Cow position:chr7:25195759-25195585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:14-183
               
               
               Cow position:chr7:33370603-33370435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:14-184
               
               
               Cow position:chr7:39129390-39129564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):35, 149

               
               
               Conread position:14-184
               
               
               Cow position:chr7:41293538-41293704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:14-184
               
               
               Cow position:chr7:50772522-50772690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:14-184
               
               
               Cow position:chr7:64135256-64135425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:14-191
               
               
               Cow position:chr7:7786797-7786977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:100
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:14-191
               
               
               Cow position:chr7:51685226-51685049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-192
               
               
               Cow position:chr7:13593986-13593803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):37, 137

               
               
               Conread position:15-153
               
               
               Cow position:chr7:61984149-61984012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):125, 46

               
               
               Conread position:15-155
               
               
               Cow position:chr7:12913782-12913921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:16-181
               
               
               Cow position:chr7:47512472-47512315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:16-184
               
               
               Cow position:chr7:33104362-33104204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:17-183
               
               
               Cow position:chr7:40710334-40710170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):7, 39

               
               
               Conread position:18-149
               
               
               Cow position:chr7:30536360-30536492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):34, 107

               
               
               Conread position:18-164
               
               
               Cow position:chr7:41104355-41104491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:18-170
               
               
               Cow position:chr7:13440230-13440382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:18-178
               
               
               Cow position:chr7:31049394-31049542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:18-181
               
               
               Cow position:chr7:914252-914089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:18-183
               
               
               Cow position:chr7:11444196-11444025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:18-183
               
               
               Cow position:chr7:26791715-26791550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:18-183
               
               
               Cow position:chr7:27543779-27543621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:18-184
               
               
               Cow position:chr7:39167668-39167505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:18-184
               
               
               Cow position:chr7:46823878-46823712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:18-184
               
               
               Cow position:chr7:53653200-53653025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:18-184
               
               
               Cow position:chr7:58800375-58800211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:19-135
               
               
               Cow position:chr7:1355986-1356100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:92
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:19-149
               
               
               Cow position:chr7:53211423-53211295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-156
               
               
               Cow position:chr7:64002393-64002529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):91, 28

               
               
               Conread position:19-179
               
               
               Cow position:chr7:27062983-27062823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):32, 47

               
               
               Conread position:19-181
               
               
               Cow position:chr7:47503902-47503731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-182
               
               
               Cow position:chr7:33720243-33720079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):55, 27

               
               
               Conread position:19-184
               
               
               Cow position:chr7:24220864-24220710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:19-184
               
               
               Cow position:chr7:32324403-32324243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:19-184
               
               
               Cow position:chr7:33810914-33810752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):147, 34

               
               
               Conread position:19-184
               
               
               Cow position:chr7:60121234-60121068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:19-185
               
               
               Cow position:chr7:53996507-53996343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:20-167
               
               
               Cow position:chr7:55498883-55499031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:20-176
               
               
               Cow position:chr7:11487468-11487622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:20-176
               
               
               Cow position:chr7:23671956-23671802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:20-177
               
               
               Cow position:chr7:62603383-62603226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:20-183
               
               
               Cow position:chr7:1376334-1376181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:20-183
               
               
               Cow position:chr7:23668222-23668385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:20-183
               
               
               Cow position:chr7:37435449-37435286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:20-183
               
               
               Cow position:chr7:39939941-39939779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:20-184
               
               
               Cow position:chr7:19652235-19652395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):113, 43

               
               
               Conread position:20-185
               
               
               Cow position:chr7:58329697-58329863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):131, 15

               
               
               Conread position:21-149
               
               
               Cow position:chr7:46003133-46003259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:99
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:21-191
               
               
               Cow position:chr7:42222735-42222907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):118, 26

               
               
               Conread position:21-202
               
               
               Cow position:chr7:9346899-9346729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):147, 34

               
               
               Conread position:22-191
               
               
               Cow position:chr7:19414247-19414416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:25-181
               
               
               Cow position:chr7:6271489-6271328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:25-184
               
               
               Cow position:chr7:49636010-49636174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:25-184
               
               
               Cow position:chr7:49745663-49745499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:26-149
               
               
               Cow position:chr7:12212172-12212299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:26-182
               
               
               Cow position:chr7:23568539-23568691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:27-197
               
               
               Cow position:chr7:34005156-34004991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:29-184
               
               
               Cow position:chr7:40894742-40894583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:30-183
               
               
               Cow position:chr7:66894347-66894496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:31-182
               
               
               Cow position:chr7:15490162-15490313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:31-183
               
               
               Cow position:chr7:36507445-36507295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:31-184
               
               
               Cow position:chr7:39160379-39160230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:32-183
               
               
               Cow position:chr7:61601121-61601273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):8, 50

               
               
               Conread position:34-161
               
               
               Cow position:chr7:1781992-1782125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:36-184
               
               
               Cow position:chr7:39162562-39162417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:39-184
               
               
               Cow position:chr7:36570048-36569904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):112, 16

               
               
               Conread position:41-184
               
               
               Cow position:chr7:48406313-48406453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):94, 21

               
               
               Conread position:41-184
               
               
               Cow position:chr7:57258838-57258981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:44-179
               
               
               Cow position:chr7:41103673-41103537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:45-184
               
               
               Cow position:chr7:39168062-39167923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:46-184
               
               
               Cow position:chr7:24927844-24927981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:47-170
               
               
               Cow position:chr7:40305259-40305380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:98
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:48-171
               
               
               Cow position:chr7:6077305-6077428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:99
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-171
               
               
               Cow position:chr7:64236082-64236206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:48-175
               
               
               Cow position:chr7:23896514-23896386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:48-182
               
               
               Cow position:chr7:3256167-3256301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-182
               
               
               Cow position:chr7:40067838-40067705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr7:5201499-5201635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr7:24461129-24460993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr7:41464644-41464513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr7:45158297-45158164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):16, 58

               
               
               Conread position:48-184
               
               
               Cow position:chr7:50858132-50857994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr7:58923576-58923440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-191
               
               
               Cow position:chr7:56347649-56347790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:48-235
               
               
               Cow position:chr7:8289731-8289910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:49-184
               
               
               Cow position:chr7:40744951-40744816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:50-185
               
               
               Cow position:chr7:11716181-11716046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:51-177
               
               
               Cow position:chr7:11997271-11997145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:98
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):95, 119

               
               
               Conread position:51-180
               
               
               Cow position:chr7:35019145-35019016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:51-183
               
               
               Cow position:chr7:63085924-63085792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:51-243
               
               
               Cow position:chr7:23640728-23640919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):40, 120

               
               
               Conread position:52-148
               
               
               Cow position:chr7:39472938-39473033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:83
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:52-180
               
               
               Cow position:chr7:10796010-10795879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:53-184
               
               
               Cow position:chr7:2894899-2894769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:100
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:55-184
               
               
               Cow position:chr7:12408069-12408198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):15, 112

               
               
               Conread position:56-156
               
               
               Cow position:chr7:1783047-1783147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:86
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-181
               
               
               Cow position:chr7:9200252-9200376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:56-182
               
               
               Cow position:chr7:17713301-17713427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr7:11549834-11549708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:105
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):14, 95

               
               
               Conread position:56-184
               
               
               Cow position:chr7:23089977-23090101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:56-191
               
               
               Cow position:chr7:9800525-9800388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:56-192
               
               
               Cow position:chr7:38060256-38060392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-205
               
               
               Cow position:chr7:63946416-63946563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:57-184
               
               
               Cow position:chr7:17816918-17816791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:98
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:57-184
               
               
               Cow position:chr7:38697011-38696885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:58-184
               
               
               Cow position:chr7:15739418-15739543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:58-184
               
               
               Cow position:chr7:36774536-36774410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):80, 103

               
               
               Conread position:58-191
               
               
               Cow position:chr7:44596534-44596663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:107
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:59-181
               
               
               Cow position:chr7:14524647-14524524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:59-182
               
               
               Cow position:chr7:13096146-13096023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:95
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:59-183
               
               
               Cow position:chr7:37466680-37466556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:59-187
               
               
               Cow position:chr7:52718472-52718596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:62-184
               
               
               Cow position:chr7:9108625-9108506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):14, 27

               
               
               Conread position:64-184
               
               
               Cow position:chr7:17381617-17381497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-197
               
               
               Cow position:chr7:14497743-14497613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):45, 93

               
               
               Conread position:65-184
               
               
               Cow position:chr7:20176548-20176662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:65-184
               
               
               Cow position:chr7:25511963-25512082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:66-183
               
               
               Cow position:chr7:59076010-59075893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:94
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:67-191
               
               
               Cow position:chr7:11011520-11011647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:68-181
               
               
               Cow position:chr7:41745308-41745420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:90
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:68-185
               
               
               Cow position:chr7:11513558-11513675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:95
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:69-173
               
               
               Cow position:chr7:8376324-8376221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:71-191
               
               
               Cow position:chr7:14486229-14486111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:72-184
               
               
               Cow position:chr7:19981692-19981804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:74-184
               
               
               Cow position:chr7:9193085-9193195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:93
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:78-184
               
               
               Cow position:chr7:49630325-49630219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:82-183
               
               
               Cow position:chr7:8868971-8868866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:91
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:1-140
               
               
               Cow position:chr8:20617476-20617335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):68, 7

               
               
               Conread position:1-141
               
               
               Cow position:chr8:33664088-33663957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:1-164
               
               
               Cow position:chr8:36647241-36647398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):15, 53

               
               
               Conread position:1-179
               
               
               Cow position:chr8:10971025-10970850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:1-183
               
               
               Cow position:chr8:522235-522416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:1-183
               
               
               Cow position:chr8:34402489-34402307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-184
               
               
               Cow position:chr8:53492517-53492345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:2-187
               
               
               Cow position:chr8:1024150-1023972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:3-127
               
               
               Cow position:chr8:59092694-59092817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:3-128
               
               
               Cow position:chr8:61277975-61278095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:3-131
               
               
               Cow position:chr8:49939004-49939132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-149
               
               
               Cow position:chr8:36054355-36054208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:3-153
               
               
               Cow position:chr8:27774091-27774231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:3-174
               
               
               Cow position:chr8:20897537-20897366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-174
               
               
               Cow position:chr8:52197267-52197436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:3-175
               
               
               Cow position:chr8:27954964-27955131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:3-177
               
               
               Cow position:chr8:27662047-27661882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:3-178
               
               
               Cow position:chr8:24309437-24309260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:3-179
               
               
               Cow position:chr8:26961366-26961190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-181
               
               
               Cow position:chr8:25272021-25271843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-182
               
               
               Cow position:chr8:24210064-24209886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:3-182
               
               
               Cow position:chr8:39350596-39350775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-182
               
               
               Cow position:chr8:50957158-50957338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):155, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr8:2288899-2289079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr8:2375829-2376009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr8:5477665-5477839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr8:8112929-8112749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):153, 58

               
               
               Conread position:3-183
               
               
               Cow position:chr8:9402116-9401936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):117, 32

               
               
               Conread position:3-183
               
               
               Cow position:chr8:12058914-12058737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr8:17199241-17199420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:146
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr8:18091514-18091335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr8:19204254-19204434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:145
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr8:20582496-20582676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr8:28378576-28378755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr8:34820126-34820306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr8:36493644-36493464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr8:37167934-37167755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr8:37636381-37636559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr8:38356665-38356845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr8:43942919-43942738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):155, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr8:46799092-46799272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr8:46964927-46964747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr8:51580954-51581136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:3-184
               
               
               Cow position:chr8:21222820-21222639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-184
               
               
               Cow position:chr8:21223893-21224074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-185
               
               
               Cow position:chr8:31776384-31776201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:3-185
               
               
               Cow position:chr8:47751722-47751904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-190
               
               
               Cow position:chr8:38358608-38358420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):145, 183

               
               
               Conread position:3-191
               
               
               Cow position:chr8:37020669-37020481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-191
               
               
               Cow position:chr8:39352688-39352871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:3-200
               
               
               Cow position:chr8:48645655-48645458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:4-183
               
               
               Cow position:chr8:29765456-29765272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:5-167
               
               
               Cow position:chr8:39475727-39475560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):47, 141

               
               
               Conread position:5-183
               
               
               Cow position:chr8:19474893-19475071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:5-183
               
               
               Cow position:chr8:55454849-55454679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:5-184
               
               
               Cow position:chr8:61443032-61443204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):27, 42

               
               
               Conread position:7-181
               
               
               Cow position:chr8:45859996-45859822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:7-183
               
               
               Cow position:chr8:42880235-42880408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):47, 79

               
               
               Conread position:7-183
               
               
               Cow position:chr8:52308255-52308430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:7-184
               
               
               Cow position:chr8:55096057-55095892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:8-121
               
               
               Cow position:chr8:10194251-10194138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:89
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-124
               
               
               Cow position:chr8:36912349-36912465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-130
               
               
               Cow position:chr8:24871697-24871819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-134
               
               
               Cow position:chr8:2968763-2968637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-135
               
               
               Cow position:chr8:18887500-18887381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:8-137
               
               
               Cow position:chr8:41466237-41466369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:8-146
               
               
               Cow position:chr8:45167446-45167584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-147
               
               
               Cow position:chr8:24488669-24488526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr8:28382900-28383040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr8:38572086-38572222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-149
               
               
               Cow position:chr8:51501103-51501240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:8-150
               
               
               Cow position:chr8:34092956-34092808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:8-152
               
               
               Cow position:chr8:50825499-50825354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:8-155
               
               
               Cow position:chr8:5467899-5468051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-156
               
               
               Cow position:chr8:11135051-11135204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):47, 27

               
               
               Conread position:8-156
               
               
               Cow position:chr8:38658277-38658425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-157
               
               
               Cow position:chr8:53486104-53485944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:8-158
               
               
               Cow position:chr8:61128517-61128660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):74, 44

               
               
               Conread position:8-161
               
               
               Cow position:chr8:54306537-54306389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-161
               
               
               Cow position:chr8:57388979-57388832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:8-163
               
               
               Cow position:chr8:31767854-31768002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:8-167
               
               
               Cow position:chr8:40743031-40743192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):69, 87

               
               
               Conread position:8-168
               
               
               Cow position:chr8:38993914-38993760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):27, 48

               
               
               Conread position:8-169
               
               
               Cow position:chr8:38643323-38643483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:8-170
               
               
               Cow position:chr8:37172874-37173037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):57, 39

               
               
               Conread position:8-171
               
               
               Cow position:chr8:19223477-19223635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):84, 47

               
               
               Conread position:8-172
               
               
               Cow position:chr8:58393742-58393585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:8-173
               
               
               Cow position:chr8:1970898-1971063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):60, 11

               
               
               Conread position:8-174
               
               
               Cow position:chr8:43052158-43051992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):42, 137

               
               
               Conread position:8-175
               
               
               Cow position:chr8:56249944-56249782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-177
               
               
               Cow position:chr8:1665888-1666057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-177
               
               
               Cow position:chr8:19727637-19727465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):62, 112

               
               
               Conread position:8-177
               
               
               Cow position:chr8:60595047-60594872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:8-178
               
               
               Cow position:chr8:4500672-4500509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:8-178
               
               
               Cow position:chr8:8509878-8509710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:8-178
               
               
               Cow position:chr8:26305679-26305849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):64, 119

               
               
               Conread position:8-178
               
               
               Cow position:chr8:36768662-36768492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-178
               
               
               Cow position:chr8:53383580-53383421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr8:1651777-1651609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr8:11612737-11612563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr8:17046575-17046747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):146, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr8:19995547-19995717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):95, 57

               
               
               Conread position:8-179
               
               
               Cow position:chr8:24328660-24328839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr8:39592775-39592604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr8:48700159-48699989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):68, 93

               
               
               Conread position:8-180
               
               
               Cow position:chr8:6616596-6616776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-180
               
               
               Cow position:chr8:11277918-11278090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):79, 30

               
               
               Conread position:8-180
               
               
               Cow position:chr8:22223467-22223632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:8-180
               
               
               Cow position:chr8:60127030-60126864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr8:935890-935719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr8:3445913-3446083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):97, 48

               
               
               Conread position:8-181
               
               
               Cow position:chr8:3662359-3662538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr8:6184052-6184225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):75, 86

               
               
               Conread position:8-181
               
               
               Cow position:chr8:6665357-6665539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):47, 81

               
               
               Conread position:8-181
               
               
               Cow position:chr8:8283113-8283286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr8:8668001-8668173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr8:11003613-11003786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:144
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr8:13118553-13118383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr8:20327668-20327836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr8:20926442-20926617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:144
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr8:28228423-28228259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr8:38696210-38696381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr8:46543937-46544105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr8:50024779-50024949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr8:50310668-50310837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr8:7609758-7609922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr8:8772890-8773065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):56, 15

               
               
               Conread position:8-182
               
               
               Cow position:chr8:25388338-25388153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):39, 165

               
               
               Conread position:8-182
               
               
               Cow position:chr8:26284670-26284842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):69, 24

               
               
               Conread position:8-182
               
               
               Cow position:chr8:32278161-32278335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):58, 123

               
               
               Conread position:8-182
               
               
               Cow position:chr8:37635812-37635981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr8:41219513-41219341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr8:49305564-49305736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr8:55885156-55884986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr8:58598821-58598653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):106, 51

               
               
               Conread position:8-183
               
               
               Cow position:chr8:1526557-1526725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):122, 47

               
               
               Conread position:8-183
               
               
               Cow position:chr8:1620540-1620714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr8:3423190-3423017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr8:5173100-5173273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr8:6535922-6536095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):55, 24

               
               
               Conread position:8-183
               
               
               Cow position:chr8:6909976-6910150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr8:11124382-11124550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr8:11216674-11216843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr8:11864135-11863962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr8:13922823-13922654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr8:15922077-15922255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):52, 131

               
               
               Conread position:8-183
               
               
               Cow position:chr8:16413626-16413798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):69, 142

               
               
               Conread position:8-183
               
               
               Cow position:chr8:18017705-18017530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr8:19378440-19378263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr8:20105687-20105861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):166, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr8:22274047-22273875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr8:27731224-27731049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr8:28322157-28321986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):161, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr8:32332287-32332474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr8:34035857-34035689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr8:36249234-36249406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr8:36299706-36299881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr8:37571519-37571692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):162, 47

               
               
               Conread position:8-183
               
               
               Cow position:chr8:38415942-38416117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr8:38816578-38816409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr8:44700165-44699991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):162, 43

               
               
               Conread position:8-183
               
               
               Cow position:chr8:51524191-51524019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr8:52657343-52657174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr8:53606334-53606507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):149, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr8:54177529-54177703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):42, 19

               
               
               Conread position:8-183
               
               
               Cow position:chr8:55058894-55058714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):57, 157

               
               
               Conread position:8-183
               
               
               Cow position:chr8:57281313-57281141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr8:4525260-4525092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr8:4992734-4992564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr8:5484386-5484562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr8:6194166-6193985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr8:15426934-15426755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):47, 79

               
               
               Conread position:8-184
               
               
               Cow position:chr8:16061257-16061085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):56, 144

               
               
               Conread position:8-184
               
               
               Cow position:chr8:16505672-16505506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr8:20107610-20107780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr8:21600637-21600457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:147
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr8:21911827-21911647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr8:24870622-24870797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr8:28210170-28209993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr8:31166905-31167094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):42, 162

               
               
               Conread position:8-184
               
               
               Cow position:chr8:32457972-32457799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):123, 47

               
               
               Conread position:8-184
               
               
               Cow position:chr8:33125678-33125509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):72, 45

               
               
               Conread position:8-184
               
               
               Cow position:chr8:35497502-35497669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr8:36375338-36375505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr8:37291902-37292079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr8:38711771-38711604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr8:38790141-38789970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr8:41722007-41722176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):122, 92

               
               
               Conread position:8-184
               
               
               Cow position:chr8:43104099-43104280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):48, 150

               
               
               Conread position:8-184
               
               
               Cow position:chr8:43112667-43112835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):159, 47

               
               
               Conread position:8-184
               
               
               Cow position:chr8:50282063-50281888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):152, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr8:53965286-53965466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:8-185
               
               
               Cow position:chr8:4655958-4656128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:8-188
               
               
               Cow position:chr8:61860174-61859990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):46, 88

               
               
               Conread position:8-191
               
               
               Cow position:chr8:18081712-18081540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr8:19785042-19784866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):83, 54

               
               
               Conread position:8-191
               
               
               Cow position:chr8:21611580-21611381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr8:24406458-24406637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr8:25554642-25554825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr8:26626055-26625872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:145
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr8:50736017-50735826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:8-192
               
               
               Cow position:chr8:28509272-28509449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):169, 52

               
               
               Conread position:8-196
               
               
               Cow position:chr8:1297695-1297509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:8-198
               
               
               Cow position:chr8:24419102-24419279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-203
               
               
               Cow position:chr8:6795571-6795369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):73, 169

               
               
               Conread position:9-121
               
               
               Cow position:chr8:20109468-20109356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:9-150
               
               
               Cow position:chr8:10639924-10639776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):40, 88

               
               
               Conread position:9-161
               
               
               Cow position:chr8:39968098-39968247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:9-164
               
               
               Cow position:chr8:38996839-38996686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:9-167
               
               
               Cow position:chr8:10832247-10832405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):51, 152

               
               
               Conread position:9-170
               
               
               Cow position:chr8:42145583-42145748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):55, 154

               
               
               Conread position:9-171
               
               
               Cow position:chr8:39898874-39898720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):154, 46

               
               
               Conread position:9-177
               
               
               Cow position:chr8:21858527-21858700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:9-182
               
               
               Cow position:chr8:55070901-55070730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:9-184
               
               
               Cow position:chr8:6816491-6816659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:9-184
               
               
               Cow position:chr8:17247401-17247237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:9-191
               
               
               Cow position:chr8:9811411-9811229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:9-191
               
               
               Cow position:chr8:48527781-48527962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):109, 11

               
               
               Conread position:10-147
               
               
               Cow position:chr8:22428393-22428530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:104
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:10-148
               
               
               Cow position:chr8:54239746-54239612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:10-167
               
               
               Cow position:chr8:45687495-45687649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:10-183
               
               
               Cow position:chr8:16144315-16144142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:140
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:10-184
               
               
               Cow position:chr8:32304121-32303939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:10-184
               
               
               Cow position:chr8:61845367-61845541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):148, 35

               
               
               Conread position:11-126
               
               
               Cow position:chr8:47667795-47667908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:92
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:11-131
               
               
               Cow position:chr8:31615345-31615224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:95
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:11-146
               
               
               Cow position:chr8:16053871-16053742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:11-148
               
               
               Cow position:chr8:633491-633628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-149
               
               
               Cow position:chr8:12105731-12105594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):5, 10

               
               
               Conread position:11-156
               
               
               Cow position:chr8:4753793-4753932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:11-156
               
               
               Cow position:chr8:34556348-34556203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):43, 58

               
               
               Conread position:11-161
               
               
               Cow position:chr8:38665722-38665572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-161
               
               
               Cow position:chr8:48182685-48182536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:11-168
               
               
               Cow position:chr8:18831926-18831770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:11-168
               
               
               Cow position:chr8:36034784-36034941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):66, 43

               
               
               Conread position:11-171
               
               
               Cow position:chr8:3423320-3423480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):59, 40

               
               
               Conread position:11-174
               
               
               Cow position:chr8:21776093-21775942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:11-176
               
               
               Cow position:chr8:3057024-3056859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-177
               
               
               Cow position:chr8:21069783-21069960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:11-178
               
               
               Cow position:chr8:43857876-43858046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):110, 21

               
               
               Conread position:11-179
               
               
               Cow position:chr8:20783081-20783250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:140
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):152, 43

               
               
               Conread position:11-179
               
               
               Cow position:chr8:39556312-39556141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):44, 59

               
               
               Conread position:11-181
               
               
               Cow position:chr8:8975888-8975718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-181
               
               
               Cow position:chr8:20102582-20102764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):44, 175

               
               
               Conread position:11-181
               
               
               Cow position:chr8:35816936-35817105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:11-181
               
               
               Cow position:chr8:38860751-38860575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr8:690100-690265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr8:16296583-16296754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr8:24363456-24363626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):147, 23

               
               
               Conread position:11-182
               
               
               Cow position:chr8:36531418-36531592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr8:55725585-55725755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:139
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr8:572981-573145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):156, 48

               
               
               Conread position:11-183
               
               
               Cow position:chr8:1999813-1999641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr8:9942342-9942513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):66, 78

               
               
               Conread position:11-183
               
               
               Cow position:chr8:18870065-18869891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):164, 149

               
               
               Conread position:11-183
               
               
               Cow position:chr8:19642648-19642480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr8:19857786-19857961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr8:21324335-21324506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr8:24237268-24237087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):44, 107

               
               
               Conread position:11-183
               
               
               Cow position:chr8:39426361-39426189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):57, 12

               
               
               Conread position:11-183
               
               
               Cow position:chr8:39590418-39590246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr8:58183124-58183291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr8:18730639-18730458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr8:25639924-25640090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr8:26009065-26008892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr8:30324498-30324334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr8:38852274-38852100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):44, 26

               
               
               Conread position:11-184
               
               
               Cow position:chr8:45879209-45879048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr8:45925791-45925630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr8:47170127-47169955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr8:54197688-54197868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr8:57406949-57406772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):39, 143

               
               
               Conread position:11-187
               
               
               Cow position:chr8:53552853-53552683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:11-189
               
               
               Cow position:chr8:5665507-5665688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:11-189
               
               
               Cow position:chr8:31265730-31265900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:11-191
               
               
               Cow position:chr8:1188094-1187925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-191
               
               
               Cow position:chr8:35580455-35580631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-208
               
               
               Cow position:chr8:3762331-3762133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):178, 9

               
               
               Conread position:12-111
               
               
               Cow position:chr8:61033103-61033202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:82
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-139
               
               
               Cow position:chr8:6413330-6413205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:12-139
               
               
               Cow position:chr8:32243777-32243653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:12-145
               
               
               Cow position:chr8:31902509-31902636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:109
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-148
               
               
               Cow position:chr8:6224259-6224390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-148
               
               
               Cow position:chr8:19616488-19616360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:12-156
               
               
               Cow position:chr8:53641602-53641454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):54, 85

               
               
               Conread position:12-167
               
               
               Cow position:chr8:2156900-2157059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:12-167
               
               
               Cow position:chr8:3793333-3793182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:12-167
               
               
               Cow position:chr8:26881647-26881800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:12-168
               
               
               Cow position:chr8:3887515-3887361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:12-171
               
               
               Cow position:chr8:16216239-16216083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:12-173
               
               
               Cow position:chr8:49543061-49542904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:12-174
               
               
               Cow position:chr8:8766953-8767114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):56, 147

               
               
               Conread position:12-179
               
               
               Cow position:chr8:21826561-21826719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:12-179
               
               
               Cow position:chr8:42378716-42378881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:12-179
               
               
               Cow position:chr8:55974632-55974800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):23, 61

               
               
               Conread position:12-179
               
               
               Cow position:chr8:61848547-61848711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-180
               
               
               Cow position:chr8:46874730-46874570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-180
               
               
               Cow position:chr8:54546779-54546606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:12-181
               
               
               Cow position:chr8:5671972-5672140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):52, 113

               
               
               Conread position:12-181
               
               
               Cow position:chr8:47057483-47057650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr8:6478028-6477860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr8:34059982-34060149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr8:42762254-42762418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr8:42794133-42794309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr8:676132-676304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr8:9168635-9168805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr8:20409869-20409700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr8:37298658-37298484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):145, 65

               
               
               Conread position:12-183
               
               
               Cow position:chr8:44126652-44126481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr8:46952697-46952527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr8:55064118-55063948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):48, 61

               
               
               Conread position:12-184
               
               
               Cow position:chr8:537728-537902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr8:8097084-8097256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr8:21212966-21212804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):106, 52

               
               
               Conread position:12-184
               
               
               Cow position:chr8:55900845-55901011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr8:61067466-61067300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):60, 43

               
               
               Conread position:12-185
               
               
               Cow position:chr8:51511674-51511841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:12-188
               
               
               Cow position:chr8:30419226-30419050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):31, 36

               
               
               Conread position:12-191
               
               
               Cow position:chr8:27138615-27138791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-191
               
               
               Cow position:chr8:47283887-47284066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):41, 75

               
               
               Conread position:12-201
               
               
               Cow position:chr8:17179858-17180039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-201
               
               
               Cow position:chr8:35563522-35563330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):42, 76

               
               
               Conread position:12-202
               
               
               Cow position:chr8:25083357-25083168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):148, 116

               
               
               Conread position:12-204
               
               
               Cow position:chr8:37167455-37167265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):164, 0

               
               
               Conread position:12-205
               
               
               Cow position:chr8:51576444-51576252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:13-176
               
               
               Cow position:chr8:29173389-29173228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:13-176
               
               
               Cow position:chr8:44449426-44449585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):87, 48

               
               
               Conread position:13-183
               
               
               Cow position:chr8:13479170-13478998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:13-184
               
               
               Cow position:chr8:8323690-8323859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:14-123
               
               
               Cow position:chr8:20112614-20112503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:14-165
               
               
               Cow position:chr8:39545178-39545025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):134, 49

               
               
               Conread position:14-170
               
               
               Cow position:chr8:36372384-36372541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:14-179
               
               
               Cow position:chr8:21917160-21917319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:14-191
               
               
               Cow position:chr8:13454443-13454620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-191
               
               
               Cow position:chr8:53927837-53928012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):135, 46

               
               
               Conread position:14-203
               
               
               Cow position:chr8:53251514-53251710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):38, 187

               
               
               Conread position:15-191
               
               
               Cow position:chr8:54032052-54031885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:16-155
               
               
               Cow position:chr8:22599915-22600054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):47, 7

               
               
               Conread position:16-175
               
               
               Cow position:chr8:37443698-37443550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:16-176
               
               
               Cow position:chr8:9815073-9814915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):62, 142

               
               
               Conread position:18-149
               
               
               Cow position:chr8:20910898-20911031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:18-175
               
               
               Cow position:chr8:37148487-37148330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:18-180
               
               
               Cow position:chr8:23652926-23653086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:18-183
               
               
               Cow position:chr8:9652841-9652686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:18-183
               
               
               Cow position:chr8:24512970-24513132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:18-183
               
               
               Cow position:chr8:35827627-35827792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:18-184
               
               
               Cow position:chr8:11606506-11606337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:18-191
               
               
               Cow position:chr8:46743141-46743308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:19-149
               
               
               Cow position:chr8:21057914-21058041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-149
               
               
               Cow position:chr8:24427028-24427155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-149
               
               
               Cow position:chr8:33020387-33020259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-149
               
               
               Cow position:chr8:36471498-36471367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:19-182
               
               
               Cow position:chr8:5894109-5893958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-183
               
               
               Cow position:chr8:8924164-8924336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:19-183
               
               
               Cow position:chr8:52339500-52339338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):47, 122

               
               
               Conread position:19-183
               
               
               Cow position:chr8:60746817-60746651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:19-184
               
               
               Cow position:chr8:29958580-29958417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):41, 136

               
               
               Conread position:19-184
               
               
               Cow position:chr8:38811478-38811314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):156, 0

               
               
               Conread position:19-184
               
               
               Cow position:chr8:39487461-39487626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):49, 32

               
               
               Conread position:19-184
               
               
               Cow position:chr8:40697052-40696889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):48, 139

               
               
               Conread position:19-184
               
               
               Cow position:chr8:55853503-55853347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:19-184
               
               
               Cow position:chr8:58417860-58417700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):51, 133

               
               
               Conread position:20-184
               
               
               Cow position:chr8:37347276-37347444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:20-203
               
               
               Cow position:chr8:36860638-36860465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):163, 30

               
               
               Conread position:21-182
               
               
               Cow position:chr8:43439783-43439625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:21-184
               
               
               Cow position:chr8:55348499-55348348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:21-191
               
               
               Cow position:chr8:53633059-53633219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:22-183
               
               
               Cow position:chr8:35456669-35456830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:22-184
               
               
               Cow position:chr8:1114640-1114798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:22-184
               
               
               Cow position:chr8:15394688-15394849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):38, 71

               
               
               Conread position:25-161
               
               
               Cow position:chr8:27033941-27033805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:26-184
               
               
               Cow position:chr8:43163543-43163692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):67, 24

               
               
               Conread position:26-191
               
               
               Cow position:chr8:48512856-48513009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:27-161
               
               
               Cow position:chr8:55214414-55214282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:106
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:27-184
               
               
               Cow position:chr8:6232731-6232885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):113, 27

               
               
               Conread position:29-184
               
               
               Cow position:chr8:5884527-5884680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:30-183
               
               
               Cow position:chr8:20307140-20306991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:32-185
               
               
               Cow position:chr8:21961603-21961451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):37, 10

               
               
               Conread position:33-156
               
               
               Cow position:chr8:38801329-38801209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:35-183
               
               
               Cow position:chr8:35534125-35534273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:36-191
               
               
               Cow position:chr8:4648317-4648472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:37-184
               
               
               Cow position:chr8:22183874-22183719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:39-182
               
               
               Cow position:chr8:25455555-25455419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:41-181
               
               
               Cow position:chr8:47664750-47664892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:42-172
               
               
               Cow position:chr8:56580758-56580632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:42-177
               
               
               Cow position:chr8:13732454-13732588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:42-184
               
               
               Cow position:chr8:1588459-1588601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:45-181
               
               
               Cow position:chr8:7351243-7351106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):24, 57

               
               
               Conread position:45-184
               
               
               Cow position:chr8:47192322-47192459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):11, 50

               
               
               Conread position:45-185
               
               
               Cow position:chr8:39782746-39782606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):107, 33

               
               
               Conread position:45-191
               
               
               Cow position:chr8:20157610-20157756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:46-184
               
               
               Cow position:chr8:33805672-33805534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-181
               
               
               Cow position:chr8:9468487-9468360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:48-181
               
               
               Cow position:chr8:14109536-14109404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:48-182
               
               
               Cow position:chr8:18647216-18647345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):15, 89

               
               
               Conread position:48-182
               
               
               Cow position:chr8:39174095-39174230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:48-182
               
               
               Cow position:chr8:54147813-54147679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-183
               
               
               Cow position:chr8:12795971-12795836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr8:40579266-40579403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr8:45126087-45126224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr8:45127555-45127692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr8:47462006-47461869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:48-191
               
               
               Cow position:chr8:49659274-49659133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:48-198
               
               
               Cow position:chr8:47969133-47969283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:49-183
               
               
               Cow position:chr8:24767265-24767395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:49-184
               
               
               Cow position:chr8:38596078-38596210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):45, 104

               
               
               Conread position:51-184
               
               
               Cow position:chr8:3922572-3922705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:51-184
               
               
               Cow position:chr8:37882489-37882356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:53-184
               
               
               Cow position:chr8:3891283-3891413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):10, 93

               
               
               Conread position:55-184
               
               
               Cow position:chr8:60485348-60485217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:55-187
               
               
               Cow position:chr8:48956084-48955950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:108
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):15, 51

               
               
               Conread position:56-175
               
               
               Cow position:chr8:11148502-11148620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:97
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:56-179
               
               
               Cow position:chr8:36672057-36671931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:56-182
               
               
               Cow position:chr8:17167709-17167583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-183
               
               
               Cow position:chr8:15238271-15238398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-183
               
               
               Cow position:chr8:36490008-36489881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr8:20339414-20339290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:59-182
               
               
               Cow position:chr8:13374681-13374559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:96
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:59-184
               
               
               Cow position:chr8:34774632-34774509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:59-187
               
               
               Cow position:chr8:5546274-5546146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:61-191
               
               
               Cow position:chr8:3795957-3795830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:63-184
               
               
               Cow position:chr8:32192822-32192701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:99
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-167
               
               
               Cow position:chr8:4821048-4821149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:86
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:64-170
               
               
               Cow position:chr8:4940188-4940293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:89
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):20, 47

               
               
               Conread position:64-179
               
               
               Cow position:chr8:28884968-28884853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-181
               
               
               Cow position:chr8:642446-642562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:97
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:64-182
               
               
               Cow position:chr8:26694964-26694845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:64-184
               
               
               Cow position:chr8:10846370-10846250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-184
               
               
               Cow position:chr8:37709281-37709161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-197
               
               
               Cow position:chr8:45149661-45149792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:65-184
               
               
               Cow position:chr8:48086476-48086595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:66-185
               
               
               Cow position:chr8:13723535-13723419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:67-184
               
               
               Cow position:chr8:53429905-53429786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:94
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:68-191
               
               
               Cow position:chr8:61738461-61738339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:96
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:69-183
               
               
               Cow position:chr8:52968184-52968298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:71-191
               
               
               Cow position:chr8:40143728-40143848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:71-191
               
               
               Cow position:chr8:45244905-45245027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:72-183
               
               
               Cow position:chr8:21222314-21222204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:89
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:72-184
               
               
               Cow position:chr8:58520417-58520304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:92
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:75-184
               
               
               Cow position:chr8:3593779-3593670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:91
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:75-184
               
               
               Cow position:chr8:26304271-26304380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:89
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:75-191
               
               
               Cow position:chr8:4552628-4552744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:79-179
               
               
               Cow position:chr8:2163790-2163888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:85
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:1-167
               
               
               Cow position:chr9:61019515-61019349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):158, 7

               
               
               Conread position:1-191
               
               
               Cow position:chr9:5327112-5327294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:2-164
               
               
               Cow position:chr9:27686432-27686594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):121, 98

               
               
               Conread position:2-168
               
               
               Cow position:chr9:5155942-5156114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:2-168
               
               
               Cow position:chr9:47446168-47446003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):70, 78

               
               
               Conread position:2-183
               
               
               Cow position:chr9:3185978-3186154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):8, 59

               
               
               Conread position:2-183
               
               
               Cow position:chr9:8767565-8767388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):133, 53

               
               
               Conread position:3-127
               
               
               Cow position:chr9:32019476-32019352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-148
               
               
               Cow position:chr9:28342804-28342658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-149
               
               
               Cow position:chr9:18163506-18163361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:3-155
               
               
               Cow position:chr9:33128005-33127854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:3-161
               
               
               Cow position:chr9:27308027-27307876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):147, 50

               
               
               Conread position:3-168
               
               
               Cow position:chr9:16216829-16216994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):128, 61

               
               
               Conread position:3-177
               
               
               Cow position:chr9:13993614-13993787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:3-177
               
               
               Cow position:chr9:44314857-44314684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:3-178
               
               
               Cow position:chr9:7805635-7805798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:3-178
               
               
               Cow position:chr9:17277041-17276866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-178
               
               
               Cow position:chr9:52130863-52131033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:3-179
               
               
               Cow position:chr9:43202185-43202358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):9, 53

               
               
               Conread position:3-181
               
               
               Cow position:chr9:55495138-55494960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-182
               
               
               Cow position:chr9:43623116-43623295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-182
               
               
               Cow position:chr9:63700915-63700746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:3-182
               
               
               Cow position:chr9:63853058-63853237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr9:7611936-7611764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr9:12280824-12280999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr9:13945453-13945634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr9:15806075-15805895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr9:22637950-22638130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr9:28263367-28263547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr9:32348971-32348786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr9:41644902-41644722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr9:45483960-45484139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr9:54986310-54986127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:3-184
               
               
               Cow position:chr9:3353218-3353384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:3-184
               
               
               Cow position:chr9:52513615-52513419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:3-185
               
               
               Cow position:chr9:35547116-35547298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-192
               
               
               Cow position:chr9:35466675-35466485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:149
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:3-200
               
               
               Cow position:chr9:53632075-53631883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):147, 0

               
               
               Conread position:3-206
               
               
               Cow position:chr9:37955323-37955121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:156
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):181, 0

               
               
               Conread position:4-178
               
               
               Cow position:chr9:41394798-41394624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:4-183
               
               
               Cow position:chr9:5220961-5220782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:5-136
               
               
               Cow position:chr9:50647922-50648048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):19, 44

               
               
               Conread position:5-182
               
               
               Cow position:chr9:4241260-4241433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):101, 51

               
               
               Conread position:5-183
               
               
               Cow position:chr9:48115536-48115707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:5-184
               
               
               Cow position:chr9:55288036-55287863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:6-184
               
               
               Cow position:chr9:22152227-22152057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:7-156
               
               
               Cow position:chr9:44625074-44625213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:7-161
               
               
               Cow position:chr9:36624073-36623919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):104, 48

               
               
               Conread position:7-167
               
               
               Cow position:chr9:1403682-1403524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:7-176
               
               
               Cow position:chr9:34276358-34276189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:7-176
               
               
               Cow position:chr9:34958197-34958035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:7-185
               
               
               Cow position:chr9:15215835-15215657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-127
               
               
               Cow position:chr9:26578352-26578230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:96
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:8-128
               
               
               Cow position:chr9:39142512-39142391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:95
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:8-131
               
               
               Cow position:chr9:16826346-16826219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:8-134
               
               
               Cow position:chr9:44526965-44527097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-144
               
               
               Cow position:chr9:13141384-13141527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:8-144
               
               
               Cow position:chr9:60741327-60741195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:8-145
               
               
               Cow position:chr9:11200084-11199947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-145
               
               
               Cow position:chr9:13722285-13722148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-147
               
               
               Cow position:chr9:9243400-9243543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:8-147
               
               
               Cow position:chr9:35932958-35932822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr9:9495015-9495149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr9:27495087-27495230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):19, 35

               
               
               Conread position:8-148
               
               
               Cow position:chr9:51620300-51620438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr9:53323931-53323791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-149
               
               
               Cow position:chr9:20712694-20712830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-150
               
               
               Cow position:chr9:17769177-17769313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-154
               
               
               Cow position:chr9:1443765-1443619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):8, 143

               
               
               Conread position:8-154
               
               
               Cow position:chr9:11447951-11447809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-154
               
               
               Cow position:chr9:26394492-26394350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-154
               
               
               Cow position:chr9:42482759-42482908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):50, 82

               
               
               Conread position:8-155
               
               
               Cow position:chr9:24079161-24079302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:8-155
               
               
               Cow position:chr9:34760510-34760364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:8-160
               
               
               Cow position:chr9:12355637-12355791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:8-161
               
               
               Cow position:chr9:8592574-8592421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):50, 65

               
               
               Conread position:8-161
               
               
               Cow position:chr9:23840549-23840387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:8-161
               
               
               Cow position:chr9:55117938-55118093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-163
               
               
               Cow position:chr9:26388072-26388216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:8-164
               
               
               Cow position:chr9:9091252-9091096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-164
               
               
               Cow position:chr9:28315280-28315438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:8-167
               
               
               Cow position:chr9:14357268-14357427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-167
               
               
               Cow position:chr9:22447439-22447282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-168
               
               
               Cow position:chr9:4263233-4263077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:8-168
               
               
               Cow position:chr9:34024555-34024712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-171
               
               
               Cow position:chr9:11309713-11309876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-171
               
               
               Cow position:chr9:50977400-50977236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:8-173
               
               
               Cow position:chr9:1712852-1712688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:8-173
               
               
               Cow position:chr9:48282050-48282220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-174
               
               
               Cow position:chr9:8645119-8645286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:8-174
               
               
               Cow position:chr9:40984360-40984524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-174
               
               
               Cow position:chr9:61286617-61286781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):80, 47

               
               
               Conread position:8-176
               
               
               Cow position:chr9:4257121-4256966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:8-177
               
               
               Cow position:chr9:35403442-35403605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-178
               
               
               Cow position:chr9:38624771-38624601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr9:23956121-23955956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr9:23971037-23970872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):127, 39

               
               
               Conread position:8-179
               
               
               Cow position:chr9:25400331-25400175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr9:37951044-37950874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):163, 0

               
               
               Conread position:8-179
               
               
               Cow position:chr9:46344781-46344960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-180
               
               
               Cow position:chr9:12495070-12495240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):133, 115

               
               
               Conread position:8-180
               
               
               Cow position:chr9:26057573-26057412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:8-180
               
               
               Cow position:chr9:31215935-31216109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):110, 47

               
               
               Conread position:8-180
               
               
               Cow position:chr9:34917321-34917162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-180
               
               
               Cow position:chr9:53123942-53124114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr9:2397666-2397833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr9:3847251-3847428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr9:6954397-6954223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr9:13670492-13670658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr9:28747662-28747496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr9:29091626-29091804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):119, 145

               
               
               Conread position:8-181
               
               
               Cow position:chr9:30665144-30664962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr9:40603523-40603694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr9:42061949-42062125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:8-181
               
               
               Cow position:chr9:42497684-42497854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):98, 45

               
               
               Conread position:8-182
               
               
               Cow position:chr9:6192601-6192432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):132, 47

               
               
               Conread position:8-182
               
               
               Cow position:chr9:7101290-7101469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):52, 116

               
               
               Conread position:8-182
               
               
               Cow position:chr9:12786620-12786446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:142
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr9:13744078-13743903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr9:17872251-17872083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr9:22165861-22165686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr9:28726873-28726697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):98, 55

               
               
               Conread position:8-182
               
               
               Cow position:chr9:29006415-29006584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr9:33120035-33119861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr9:33219101-33218927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):40, 129

               
               
               Conread position:8-182
               
               
               Cow position:chr9:34362592-34362763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr9:34707454-34707285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr9:36627978-36628145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr9:37198983-37199154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-182
               
               
               Cow position:chr9:64105759-64105926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr9:3573320-3573494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr9:8613357-8613183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):84, 12

               
               
               Conread position:8-183
               
               
               Cow position:chr9:9311715-9311886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr9:9724023-9723851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr9:9753547-9753363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):47, 94

               
               
               Conread position:8-183
               
               
               Cow position:chr9:14738108-14738277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr9:16811799-16811626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr9:27279162-27279337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr9:31344754-31344579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr9:32307378-32307205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):152, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr9:34410537-34410368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr9:35028311-35028136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):145, 69

               
               
               Conread position:8-183
               
               
               Cow position:chr9:37934383-37934208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr9:44396515-44396689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):170, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr9:44709685-44709853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):8, 56

               
               
               Conread position:8-183
               
               
               Cow position:chr9:47591128-47590953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr9:57274074-57274248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr9:1878142-1877977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr9:5110712-5110887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr9:5469725-5469895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr9:6839847-6840022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):62, 46

               
               
               Conread position:8-184
               
               
               Cow position:chr9:6934225-6934045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):24, 137

               
               
               Conread position:8-184
               
               
               Cow position:chr9:8723651-8723822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr9:8992323-8992150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):92, 47

               
               
               Conread position:8-184
               
               
               Cow position:chr9:10010668-10010839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr9:11123624-11123456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr9:12226129-12225949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):51, 101

               
               
               Conread position:8-184
               
               
               Cow position:chr9:20637231-20637402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr9:22804113-22803942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):106, 46

               
               
               Conread position:8-184
               
               
               Cow position:chr9:26085913-26086085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):25, 55

               
               
               Conread position:8-184
               
               
               Cow position:chr9:26102588-26102752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr9:26477068-26477245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:147
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr9:33347625-33347461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr9:33597829-33598015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr9:34286654-34286828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr9:34484446-34484624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr9:38846485-38846308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):46, 147

               
               
               Conread position:8-184
               
               
               Cow position:chr9:40215103-40215272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):83, 44

               
               
               Conread position:8-184
               
               
               Cow position:chr9:41282868-41283044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:146
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr9:41470245-41470069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):75, 86

               
               
               Conread position:8-184
               
               
               Cow position:chr9:44822466-44822295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr9:52407023-52407193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):8, 84

               
               
               Conread position:8-184
               
               
               Cow position:chr9:54716761-54716578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):45, 149

               
               
               Conread position:8-184
               
               
               Cow position:chr9:56032461-56032286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):68, 56

               
               
               Conread position:8-184
               
               
               Cow position:chr9:56065422-56065585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chr9:63785053-63784885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:8-185
               
               
               Cow position:chr9:34375071-34374894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-185
               
               
               Cow position:chr9:47214694-47214515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:151
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):31, 72

               
               
               Conread position:8-187
               
               
               Cow position:chr9:45749288-45749473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):93, 68

               
               
               Conread position:8-188
               
               
               Cow position:chr9:61847259-61847098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:8-189
               
               
               Cow position:chr9:8537162-8537341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):151, 87

               
               
               Conread position:8-189
               
               
               Cow position:chr9:29819582-29819752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr9:9815266-9815447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:146
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):152, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr9:12337756-12337938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):53, 42

               
               
               Conread position:8-191
               
               
               Cow position:chr9:14975073-14974883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr9:31346805-31346985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr9:31514079-31513903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:8-191
               
               
               Cow position:chr9:40507738-40507563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):154, 48

               
               
               Conread position:8-192
               
               
               Cow position:chr9:43679977-43680157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:8-193
               
               
               Cow position:chr9:11271488-11271317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):160, 37

               
               
               Conread position:8-195
               
               
               Cow position:chr9:52510971-52511155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):70, 150

               
               
               Conread position:8-197
               
               
               Cow position:chr9:23632809-23632609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):42, 91

               
               
               Conread position:8-197
               
               
               Cow position:chr9:52807566-52807363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):45, 182

               
               
               Conread position:8-201
               
               
               Cow position:chr9:33114195-33114390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):54, 155

               
               
               Conread position:8-201
               
               
               Cow position:chr9:34423474-34423667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:152
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):139, 167

               
               
               Conread position:9-138
               
               
               Cow position:chr9:31625988-31626117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:9-148
               
               
               Cow position:chr9:29339455-29339320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:9-154
               
               
               Cow position:chr9:33584827-33584686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:9-167
               
               
               Cow position:chr9:17785712-17785554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:9-179
               
               
               Cow position:chr9:12773551-12773714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:9-182
               
               
               Cow position:chr9:9551949-9552117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:9-182
               
               
               Cow position:chr9:39011613-39011442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:9-184
               
               
               Cow position:chr9:51011944-51011764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):42, 116

               
               
               Conread position:9-184
               
               
               Cow position:chr9:55529660-55529824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:9-191
               
               
               Cow position:chr9:18425766-18425948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):142, 134

               
               
               Conread position:9-191
               
               
               Cow position:chr9:56827329-56827517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:10-130
               
               
               Cow position:chr9:45170526-45170406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:10-178
               
               
               Cow position:chr9:24652257-24652427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:10-179
               
               
               Cow position:chr9:38941579-38941408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:10-183
               
               
               Cow position:chr9:5456314-5456147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:10-183
               
               
               Cow position:chr9:33838450-33838285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:10-184
               
               
               Cow position:chr9:44584459-44584622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:10-191
               
               
               Cow position:chr9:5164130-5163950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:11-135
               
               
               Cow position:chr9:1841431-1841555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-148
               
               
               Cow position:chr9:33822975-33823111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:11-149
               
               
               Cow position:chr9:58440520-58440376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):60, 21

               
               
               Conread position:11-149
               
               
               Cow position:chr9:62136258-62136120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-150
               
               
               Cow position:chr9:21780782-21780919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:11-163
               
               
               Cow position:chr9:55013482-55013323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):57, 132

               
               
               Conread position:11-164
               
               
               Cow position:chr9:8834272-8834118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:11-166
               
               
               Cow position:chr9:63185838-63185684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:11-170
               
               
               Cow position:chr9:8016730-8016887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:11-171
               
               
               Cow position:chr9:5772821-5772661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-173
               
               
               Cow position:chr9:55892408-55892247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:11-174
               
               
               Cow position:chr9:52998521-52998361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:11-174
               
               
               Cow position:chr9:55807493-55807650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-177
               
               
               Cow position:chr9:20828762-20828924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:11-178
               
               
               Cow position:chr9:35306493-35306323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):53, 27

               
               
               Conread position:11-179
               
               
               Cow position:chr9:31359464-31359629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):144, 52

               
               
               Conread position:11-179
               
               
               Cow position:chr9:36401801-36401641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-179
               
               
               Cow position:chr9:41728119-41728282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:11-181
               
               
               Cow position:chr9:9358675-9358836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:11-182
               
               
               Cow position:chr9:13169806-13169636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr9:6397927-6397755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):143, 59

               
               
               Conread position:11-183
               
               
               Cow position:chr9:8937007-8937180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr9:18216053-18215882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):67, 77

               
               
               Conread position:11-183
               
               
               Cow position:chr9:20322230-20322072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr9:20755900-20755732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr9:22443764-22443599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr9:28722561-28722732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):33, 43

               
               
               Conread position:11-183
               
               
               Cow position:chr9:33541911-33542084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr9:34697443-34697274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr9:46930318-46930486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:11-183
               
               
               Cow position:chr9:52754993-52754827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr9:1751188-1751367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):35, 16

               
               
               Conread position:11-184
               
               
               Cow position:chr9:5068696-5068870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr9:5342387-5342219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr9:30402570-30402396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr9:51721028-51720871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:11-184
               
               
               Cow position:chr9:54664707-54664882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):53, 113

               
               
               Conread position:11-184
               
               
               Cow position:chr9:62631808-62631642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):110, 44

               
               
               Conread position:11-185
               
               
               Cow position:chr9:53454581-53454407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-185
               
               
               Cow position:chr9:61738780-61738952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-186
               
               
               Cow position:chr9:3356898-3356723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):149, 173

               
               
               Conread position:11-191
               
               
               Cow position:chr9:39148941-39149115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:11-203
               
               
               Cow position:chr9:58369134-58368950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:158
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:12-135
               
               
               Cow position:chr9:3789877-3789992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-141
               
               
               Cow position:chr9:19657117-19656990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:12-148
               
               
               Cow position:chr9:34279199-34279060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:12-148
               
               
               Cow position:chr9:64310919-64310783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-155
               
               
               Cow position:chr9:17027059-17027197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):86, 43

               
               
               Conread position:12-167
               
               
               Cow position:chr9:26715113-26715264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):53, 68

               
               
               Conread position:12-173
               
               
               Cow position:chr9:24887065-24887224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:12-173
               
               
               Cow position:chr9:53061513-53061680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:12-174
               
               
               Cow position:chr9:16115745-16115589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-174
               
               
               Cow position:chr9:34196050-34196215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):7, 66

               
               
               Conread position:12-176
               
               
               Cow position:chr9:6189503-6189344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:12-178
               
               
               Cow position:chr9:44759067-44758908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-179
               
               
               Cow position:chr9:4341296-4341135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:12-180
               
               
               Cow position:chr9:7543400-7543234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):125, 43

               
               
               Conread position:12-180
               
               
               Cow position:chr9:32676534-32676702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):58, 43

               
               
               Conread position:12-181
               
               
               Cow position:chr9:54677117-54677285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):56, 148

               
               
               Conread position:12-181
               
               
               Cow position:chr9:59586175-59586337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr9:1884281-1884103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr9:16300717-16300542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:12-182
               
               
               Cow position:chr9:35295555-35295717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr9:6338650-6338821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr9:8901369-8901199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr9:20319189-20319027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr9:32670089-32669919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr9:33411714-33411543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr9:36457856-36458027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr9:39709713-39709885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:12-183
               
               
               Cow position:chr9:52030336-52030506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr9:4629969-4630132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr9:30137983-30138150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):146, 39

               
               
               Conread position:12-184
               
               
               Cow position:chr9:34283813-34283982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr9:35049340-35049502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):9, 47

               
               
               Conread position:12-184
               
               
               Cow position:chr9:35167026-35167205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr9:35832757-35832590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr9:51566638-51566466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-185
               
               
               Cow position:chr9:32858784-32858602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):41, 93

               
               
               Conread position:12-186
               
               
               Cow position:chr9:6446964-6447140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:12-187
               
               
               Cow position:chr9:32955834-32955653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):49, 22

               
               
               Conread position:12-187
               
               
               Cow position:chr9:36634364-36634538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):157, 145

               
               
               Conread position:12-191
               
               
               Cow position:chr9:8998213-8998385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:12-191
               
               
               Cow position:chr9:27345729-27345548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):44, 78

               
               
               Conread position:12-191
               
               
               Cow position:chr9:40005334-40005510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:12-191
               
               
               Cow position:chr9:54598530-54598706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):157, 0

               
               
               Conread position:13-176
               
               
               Cow position:chr9:61302864-61303021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:13-178
               
               
               Cow position:chr9:52505448-52505283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:13-183
               
               
               Cow position:chr9:52763895-52763732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:13-184
               
               
               Cow position:chr9:4181691-4181520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:13-184
               
               
               Cow position:chr9:64629502-64629336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:14-125
               
               
               Cow position:chr9:3946284-3946178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:92
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:14-156
               
               
               Cow position:chr9:57642373-57642508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):123, 32

               
               
               Conread position:14-166
               
               
               Cow position:chr9:20017259-20017409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:14-183
               
               
               Cow position:chr9:38866122-38865955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):59, 40

               
               
               Conread position:14-184
               
               
               Cow position:chr9:7859776-7859608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):48, 92

               
               
               Conread position:14-184
               
               
               Cow position:chr9:21292545-21292378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):149, 40

               
               
               Conread position:14-184
               
               
               Cow position:chr9:25583691-25583857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:14-184
               
               
               Cow position:chr9:41964870-41964706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:14-184
               
               
               Cow position:chr9:47906428-47906252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):56, 95

               
               
               Conread position:14-184
               
               
               Cow position:chr9:50310901-50310737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):52, 63

               
               
               Conread position:14-191
               
               
               Cow position:chr9:54493000-54493171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:14-218
               
               
               Cow position:chr9:63134251-63134454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):48, 27

               
               
               Conread position:15-128
               
               
               Cow position:chr9:35360429-35360316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:91
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:18-155
               
               
               Cow position:chr9:44093219-44093082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:18-164
               
               
               Cow position:chr9:11506160-11506310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:18-168
               
               
               Cow position:chr9:3198316-3198174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:18-175
               
               
               Cow position:chr9:8467922-8468076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:18-181
               
               
               Cow position:chr9:54681386-54681535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:18-182
               
               
               Cow position:chr9:52267896-52267731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):46, 136

               
               
               Conread position:18-183
               
               
               Cow position:chr9:41416196-41416361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:18-183
               
               
               Cow position:chr9:46981358-46981200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):156, 37

               
               
               Conread position:18-183
               
               
               Cow position:chr9:49374052-49374215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:18-184
               
               
               Cow position:chr9:25375871-25375707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:18-184
               
               
               Cow position:chr9:29185274-29185108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:18-184
               
               
               Cow position:chr9:52258200-52258038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):36, 123

               
               
               Conread position:18-185
               
               
               Cow position:chr9:17677247-17677080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:18-208
               
               
               Cow position:chr9:49764511-49764709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):27, 35

               
               
               Conread position:19-142
               
               
               Cow position:chr9:3369854-3369981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):37, 101

               
               
               Conread position:19-150
               
               
               Cow position:chr9:54086150-54086020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:19-158
               
               
               Cow position:chr9:18008893-18008748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:19-164
               
               
               Cow position:chr9:8535721-8535876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:19-177
               
               
               Cow position:chr9:18003315-18003169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):150, 10

               
               
               Conread position:19-179
               
               
               Cow position:chr9:11168603-11168754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-179
               
               
               Cow position:chr9:22408624-22408783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):112, 52

               
               
               Conread position:19-180
               
               
               Cow position:chr9:54611461-54611288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:19-184
               
               
               Cow position:chr9:6118573-6118409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):36, 67

               
               
               Conread position:19-184
               
               
               Cow position:chr9:7409637-7409795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):138, 27

               
               
               Conread position:19-184
               
               
               Cow position:chr9:32089250-32089418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:19-184
               
               
               Cow position:chr9:42446128-42445954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:19-184
               
               
               Cow position:chr9:58662110-58662268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:19-191
               
               
               Cow position:chr9:9443744-9443568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):36, 145

               
               
               Conread position:20-154
               
               
               Cow position:chr9:48900971-48900837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:20-161
               
               
               Cow position:chr9:11161197-11161335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:20-184
               
               
               Cow position:chr9:26279304-26279140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:20-184
               
               
               Cow position:chr9:30477904-30477746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:22-183
               
               
               Cow position:chr9:41481726-41481565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:25-164
               
               
               Cow position:chr9:15389361-15389213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:26-183
               
               
               Cow position:chr9:22434057-22433901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:27-179
               
               
               Cow position:chr9:21460279-21460130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:28-184
               
               
               Cow position:chr9:1729801-1729645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:29-183
               
               
               Cow position:chr9:63153941-63153786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:31-183
               
               
               Cow position:chr9:823838-823988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:34-184
               
               
               Cow position:chr9:5650087-5649946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:37-185
               
               
               Cow position:chr9:4646437-4646295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:39-145
               
               
               Cow position:chr9:61372685-61372579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:39-192
               
               
               Cow position:chr9:9316339-9316490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:41-183
               
               
               Cow position:chr9:53413352-53413210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:41-184
               
               
               Cow position:chr9:59386883-59386740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:43-184
               
               
               Cow position:chr9:43443692-43443830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):67, 113

               
               
               Conread position:43-192
               
               
               Cow position:chr9:47955356-47955206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:45-154
               
               
               Cow position:chr9:32710542-32710651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:87
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:45-179
               
               
               Cow position:chr9:28718602-28718736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:45-183
               
               
               Cow position:chr9:5665956-5666094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:45-184
               
               
               Cow position:chr9:7806069-7805932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:47-178
               
               
               Cow position:chr9:57117079-57116948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-148
               
               
               Cow position:chr9:29578174-29578274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:83
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-168
               
               
               Cow position:chr9:46190035-46190155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-179
               
               
               Cow position:chr9:44467449-44467315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:48-182
               
               
               Cow position:chr9:8288511-8288642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:48-182
               
               
               Cow position:chr9:11319743-11319607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:48-182
               
               
               Cow position:chr9:28686282-28686414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:48-183
               
               
               Cow position:chr9:22696114-22696250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):20, 82

               
               
               Conread position:48-183
               
               
               Cow position:chr9:28392133-28391997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr9:17310669-17310536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):22, 45

               
               
               Conread position:48-184
               
               
               Cow position:chr9:17518594-17518460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr9:21888063-21888197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr9:24243830-24243692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr9:36445507-36445649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr9:37069663-37069528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):73, 23

               
               
               Conread position:48-184
               
               
               Cow position:chr9:50081147-50081011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-184
               
               
               Cow position:chr9:54051669-54051803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):10, 93

               
               
               Conread position:48-184
               
               
               Cow position:chr9:55084408-55084275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:48-188
               
               
               Cow position:chr9:61981413-61981552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:48-191
               
               
               Cow position:chr9:1520846-1520701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):89, 42

               
               
               Conread position:48-191
               
               
               Cow position:chr9:8562715-8562856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:49-181
               
               
               Cow position:chr9:18828160-18828028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:51-182
               
               
               Cow position:chr9:16528957-16528824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:51-183
               
               
               Cow position:chr9:62668146-62668276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:105
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:51-184
               
               
               Cow position:chr9:17411297-17411164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:51-184
               
               
               Cow position:chr9:38645448-38645316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:55-171
               
               
               Cow position:chr9:23403718-23403834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:55-172
               
               
               Cow position:chr9:14597339-14597221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:55-182
               
               
               Cow position:chr9:34014349-34014222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:55-183
               
               
               Cow position:chr9:28378868-28378995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:56-146
               
               
               Cow position:chr9:1878824-1878914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:91
               
               
               Alignm identity:80
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-161
               
               
               Cow position:chr9:41716342-41716447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:89
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-181
               
               
               Cow position:chr9:64559981-64559855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):117, 96

               
               
               Conread position:56-182
               
               
               Cow position:chr9:1909713-1909587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-182
               
               
               Cow position:chr9:35793578-35793704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-183
               
               
               Cow position:chr9:39681239-39681367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:56-183
               
               
               Cow position:chr9:60110151-60110277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:98
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr9:34135618-34135745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr9:34888393-34888269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr9:39315754-39315879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr9:43342232-43342360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-184
               
               
               Cow position:chr9:64064462-64064334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-197
               
               
               Cow position:chr9:50139186-50139327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-198
               
               
               Cow position:chr9:35105889-35105747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:57-181
               
               
               Cow position:chr9:2951606-2951479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:58-184
               
               
               Cow position:chr9:19902985-19903111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:58-184
               
               
               Cow position:chr9:30652806-30652681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:58-187
               
               
               Cow position:chr9:52598818-52598689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:59-183
               
               
               Cow position:chr9:5594406-5594531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:96
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:59-183
               
               
               Cow position:chr9:64155947-64155823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:59-202
               
               
               Cow position:chr9:53736740-53736601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:60-183
               
               
               Cow position:chr9:13846221-13846099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:96
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:60-203
               
               
               Cow position:chr9:64154767-64154624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):98, 132

               
               
               Conread position:62-184
               
               
               Cow position:chr9:1867357-1867480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:63-197
               
               
               Cow position:chr9:29684053-29684187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):118, 20

               
               
               Conread position:64-180
               
               
               Cow position:chr9:8337936-8338052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-184
               
               
               Cow position:chr9:4580495-4580375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-184
               
               
               Cow position:chr9:18217190-18217070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-184
               
               
               Cow position:chr9:41781563-41781683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-184
               
               
               Cow position:chr9:52839970-52839852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:64-184
               
               
               Cow position:chr9:60355304-60355183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:99
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):23, 7

               
               
               Conread position:64-184
               
               
               Cow position:chr9:64050652-64050532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-187
               
               
               Cow position:chr9:5433541-5433664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:99
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-195
               
               
               Cow position:chr9:11427568-11427702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):106, 132

               
               
               Conread position:65-180
               
               
               Cow position:chr9:42478572-42478457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:66-171
               
               
               Cow position:chr9:34811387-34811492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:85
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:66-181
               
               
               Cow position:chr9:5245764-5245879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:66-184
               
               
               Cow position:chr9:25627995-25628114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:66-184
               
               
               Cow position:chr9:28354428-28354547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:66-184
               
               
               Cow position:chr9:62459278-62459395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:67-183
               
               
               Cow position:chr9:14796858-14796742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:67-183
               
               
               Cow position:chr9:22071049-22070933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:67-184
               
               
               Cow position:chr9:19713992-19714109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:96
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:67-184
               
               
               Cow position:chr9:43870887-43871004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:96
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:68-184
               
               
               Cow position:chr9:31098972-31098857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:70-183
               
               
               Cow position:chr9:26403700-26403813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:92
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:70-184
               
               
               Cow position:chr9:8534781-8534661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:99
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:71-184
               
               
               Cow position:chr9:55321553-55321666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:89
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:74-179
               
               
               Cow position:chr9:807341-807446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:85
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:75-196
               
               
               Cow position:chr9:15225376-15225255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:97
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-155
               
               
               Cow position:chrX:4169827-4169975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:1-183
               
               
               Cow position:chrX:31729645-31729470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:1-183
               
               
               Cow position:chrX:37489937-37489747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):50, 7

               
               
               Conread position:1-184
               
               
               Cow position:chrX:908149-907973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:1-184
               
               
               Cow position:chrX:4645706-4645886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:1-191
               
               
               Cow position:chrX:25815691-25815881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):60, 7

               
               
               Conread position:2-155
               
               
               Cow position:chrX:5915399-5915244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:3-130
               
               
               Cow position:chrX:42314684-42314811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-131
               
               
               Cow position:chrX:11670894-11670766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-135
               
               
               Cow position:chrX:25048895-25049025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:3-140
               
               
               Cow position:chrX:35509473-35509608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:3-141
               
               
               Cow position:chrX:33678263-33678403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:3-148
               
               
               Cow position:chrX:1938220-1938077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:3-157
               
               
               Cow position:chrX:26881872-26882026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-161
               
               
               Cow position:chrX:37867461-37867303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-168
               
               
               Cow position:chrX:1121159-1121324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-173
               
               
               Cow position:chrX:37751904-37752068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:3-174
               
               
               Cow position:chrX:16556016-16556180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:3-177
               
               
               Cow position:chrX:22813272-22813096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:3-180
               
               
               Cow position:chrX:35276193-35276016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-181
               
               
               Cow position:chrX:12290925-12290749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:3-181
               
               
               Cow position:chrX:17949285-17949463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-182
               
               
               Cow position:chrX:2314411-2314590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:150
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-182
               
               
               Cow position:chrX:15597235-15597056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-182
               
               
               Cow position:chrX:27515066-27514887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chrX:8731301-8731122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):147, 0

               
               
               Conread position:3-183
               
               
               Cow position:chrX:13868910-13868730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):71, 6

               
               
               Conread position:3-183
               
               
               Cow position:chrX:17231944-17231763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:3-183
               
               
               Cow position:chrX:17293163-17292983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chrX:18111586-18111406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chrX:23563583-23563763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chrX:28068058-28067878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-183
               
               
               Cow position:chrX:32330378-32330195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):113, 161

               
               
               Conread position:3-183
               
               
               Cow position:chrX:34543993-34543812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:3-183
               
               
               Cow position:chrX:40574736-40574914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:3-183
               
               
               Cow position:chrX:43050277-43050097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):72, 46

               
               
               Conread position:3-183
               
               
               Cow position:chrX:46770755-46770935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):104, 88

               
               
               Conread position:3-183
               
               
               Cow position:chrX:46793543-46793718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:3-184
               
               
               Cow position:chrX:1960218-1960398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:3-184
               
               
               Cow position:chrX:27074844-27075024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:3-187
               
               
               Cow position:chrX:30962668-30962853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:3-188
               
               
               Cow position:chrX:25049074-25049258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):181, 0

               
               
               Conread position:3-191
               
               
               Cow position:chrX:31948727-31948915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-201
               
               
               Cow position:chrX:32190965-32191163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-204
               
               
               Cow position:chrX:20345658-20345459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):189, 153

               
               
               Conread position:3-209
               
               
               Cow position:chrX:19761956-19761754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):189, 52

               
               
               Conread position:3-219
               
               
               Cow position:chrX:36568850-36569063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):135, 66

               
               
               Conread position:4-157
               
               
               Cow position:chrX:41199427-41199278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):114, 5

               
               
               Conread position:4-182
               
               
               Cow position:chrX:24105046-24104868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:4-184
               
               
               Cow position:chrX:34222919-34222743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:5-164
               
               
               Cow position:chrX:10415047-10415206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:5-183
               
               
               Cow position:chrX:12309180-12309358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:142
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:5-184
               
               
               Cow position:chrX:34503134-34502947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:7-161
               
               
               Cow position:chrX:41363647-41363809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:7-183
               
               
               Cow position:chrX:34662645-34662818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:7-183
               
               
               Cow position:chrX:44660385-44660561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):88, 157

               
               
               Conread position:7-184
               
               
               Cow position:chrX:11653970-11653791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):145, 46

               
               
               Conread position:7-184
               
               
               Cow position:chrX:16323812-16323987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):67, 151

               
               
               Conread position:7-184
               
               
               Cow position:chrX:29601626-29601801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:145
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:7-184
               
               
               Cow position:chrX:42449810-42449987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:146
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:7-201
               
               
               Cow position:chrX:47079831-47079638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):186, 0

               
               
               Conread position:8-118
               
               
               Cow position:chrX:10479952-10479842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-125
               
               
               Cow position:chrX:1996249-1996366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:97
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-125
               
               
               Cow position:chrX:9367521-9367402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:8-131
               
               
               Cow position:chrX:17929200-17929081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:8-133
               
               
               Cow position:chrX:43028431-43028310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-139
               
               
               Cow position:chrX:45657733-45657868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:8-144
               
               
               Cow position:chrX:41215525-41215389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-145
               
               
               Cow position:chrX:48574152-48574291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:8-146
               
               
               Cow position:chrX:14135877-14135743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-147
               
               
               Cow position:chrX:3494848-3494981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-148
               
               
               Cow position:chrX:6640626-6640490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-149
               
               
               Cow position:chrX:11589165-11589305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:8-149
               
               
               Cow position:chrX:22552777-22552917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:8-149
               
               
               Cow position:chrX:35543086-35542949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-154
               
               
               Cow position:chrX:23497495-23497634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-156
               
               
               Cow position:chrX:15100180-15100038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):77, 21

               
               
               Conread position:8-156
               
               
               Cow position:chrX:30840743-30840601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-156
               
               
               Cow position:chrX:41166627-41166770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):69, 54

               
               
               Conread position:8-156
               
               
               Cow position:chrX:42760455-42760307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-157
               
               
               Cow position:chrX:28107048-28106901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:8-158
               
               
               Cow position:chrX:16770267-16770117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-158
               
               
               Cow position:chrX:23485732-23485574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-162
               
               
               Cow position:chrX:4444630-4444471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):62, 154

               
               
               Conread position:8-162
               
               
               Cow position:chrX:39642426-39642573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-168
               
               
               Cow position:chrX:5097591-5097754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):59, 47

               
               
               Conread position:8-168
               
               
               Cow position:chrX:8759825-8759670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):88, 114

               
               
               Conread position:8-168
               
               
               Cow position:chrX:27442336-27442496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-168
               
               
               Cow position:chrX:31983376-31983542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:8-168
               
               
               Cow position:chrX:41990921-41991089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):54, 152

               
               
               Conread position:8-171
               
               
               Cow position:chrX:4403520-4403357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-171
               
               
               Cow position:chrX:27415386-27415540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:8-171
               
               
               Cow position:chrX:35409954-35409792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:8-171
               
               
               Cow position:chrX:36367732-36367895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-171
               
               
               Cow position:chrX:45759871-45759711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):23, 48

               
               
               Conread position:8-172
               
               
               Cow position:chrX:30824187-30824028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-173
               
               
               Cow position:chrX:34412050-34411884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:8-173
               
               
               Cow position:chrX:40035237-40035404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):151, 0

               
               
               Conread position:8-174
               
               
               Cow position:chrX:42875411-42875250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-175
               
               
               Cow position:chrX:876645-876806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:8-175
               
               
               Cow position:chrX:6389281-6389113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):149, 47

               
               
               Conread position:8-176
               
               
               Cow position:chrX:16984837-16984676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-177
               
               
               Cow position:chrX:45412041-45412203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:8-178
               
               
               Cow position:chrX:597276-597441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:8-178
               
               
               Cow position:chrX:17498525-17498355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-179
               
               
               Cow position:chrX:2936155-2935989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-179
               
               
               Cow position:chrX:6407746-6407576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:8-179
               
               
               Cow position:chrX:14925475-14925308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:8-179
               
               
               Cow position:chrX:29050444-29050282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):83, 15

               
               
               Conread position:8-179
               
               
               Cow position:chrX:31986370-31986542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):129, 69

               
               
               Conread position:8-179
               
               
               Cow position:chrX:32420413-32420244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:8-179
               
               
               Cow position:chrX:32910299-32910136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-179
               
               
               Cow position:chrX:34314223-34314056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:8-179
               
               
               Cow position:chrX:40685127-40685296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:8-180
               
               
               Cow position:chrX:19795307-19795472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):125, 41

               
               
               Conread position:8-180
               
               
               Cow position:chrX:34441251-34441423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-181
               
               
               Cow position:chrX:8642247-8642076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:8-181
               
               
               Cow position:chrX:27416297-27416122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):56, 129

               
               
               Conread position:8-181
               
               
               Cow position:chrX:38968097-38967919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):51, 133

               
               
               Conread position:8-182
               
               
               Cow position:chrX:9251961-9252134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:8-182
               
               
               Cow position:chrX:11633884-11633711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:8-182
               
               
               Cow position:chrX:19394757-19394582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):46, 58

               
               
               Conread position:8-182
               
               
               Cow position:chrX:20583865-20583695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-182
               
               
               Cow position:chrX:22387038-22387217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):56, 156

               
               
               Conread position:8-182
               
               
               Cow position:chrX:23358915-23359082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-182
               
               
               Cow position:chrX:23513805-23513986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):45, 101

               
               
               Conread position:8-182
               
               
               Cow position:chrX:26881360-26881536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):52, 21

               
               
               Conread position:8-182
               
               
               Cow position:chrX:27431719-27431889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-182
               
               
               Cow position:chrX:27668760-27668929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:8-182
               
               
               Cow position:chrX:28940446-28940271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):62, 47

               
               
               Conread position:8-182
               
               
               Cow position:chrX:32867072-32866904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-182
               
               
               Cow position:chrX:32877174-32877346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:8-182
               
               
               Cow position:chrX:34270763-34270592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:8-182
               
               
               Cow position:chrX:39290557-39290388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):11, 48

               
               
               Conread position:8-183
               
               
               Cow position:chrX:1055179-1055353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:8-183
               
               
               Cow position:chrX:3494619-3494794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chrX:3580147-3579972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chrX:3806880-3806710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:145
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:8-183
               
               
               Cow position:chrX:4109387-4109212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chrX:4632652-4632830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):84, 75

               
               
               Conread position:8-183
               
               
               Cow position:chrX:6559254-6559420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:8-183
               
               
               Cow position:chrX:8917597-8917422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chrX:11844038-11844213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chrX:12095569-12095746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):169, 0

               
               
               Conread position:8-183
               
               
               Cow position:chrX:15231457-15231632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chrX:18204261-18204439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):29, 62

               
               
               Conread position:8-183
               
               
               Cow position:chrX:22822257-22822074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:8-183
               
               
               Cow position:chrX:23335773-23335944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:8-183
               
               
               Cow position:chrX:24331979-24331804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chrX:26493209-26493034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chrX:26843064-26843241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:8-183
               
               
               Cow position:chrX:27228331-27228154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:8-183
               
               
               Cow position:chrX:27508822-27508994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):64, 92

               
               
               Conread position:8-183
               
               
               Cow position:chrX:32574518-32574345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:8-183
               
               
               Cow position:chrX:33654641-33654816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chrX:34420938-34420762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:8-183
               
               
               Cow position:chrX:36866375-36866201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:8-183
               
               
               Cow position:chrX:38321181-38321354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:8-183
               
               
               Cow position:chrX:40337113-40336939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:8-183
               
               
               Cow position:chrX:41454751-41454926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chrX:41674302-41674132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):86, 47

               
               
               Conread position:8-183
               
               
               Cow position:chrX:41790225-41790401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):34, 71

               
               
               Conread position:8-183
               
               
               Cow position:chrX:41941825-41941651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:8-183
               
               
               Cow position:chrX:42432312-42432486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):150, 47

               
               
               Conread position:8-183
               
               
               Cow position:chrX:43150633-43150457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):167, 80

               
               
               Conread position:8-183
               
               
               Cow position:chrX:44040379-44040209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):148, 0

               
               
               Conread position:8-183
               
               
               Cow position:chrX:44055005-44054830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-183
               
               
               Cow position:chrX:44995702-44995526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:8-183
               
               
               Cow position:chrX:45875595-45875420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):8, 44

               
               
               Conread position:8-183
               
               
               Cow position:chrX:46588022-46587850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:8-184
               
               
               Cow position:chrX:152107-151932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):54, 93

               
               
               Conread position:8-184
               
               
               Cow position:chrX:161605-161439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-184
               
               
               Cow position:chrX:1615856-1616014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:8-184
               
               
               Cow position:chrX:11454376-11454213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):35, 40

               
               
               Conread position:8-184
               
               
               Cow position:chrX:11656280-11656108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:8-184
               
               
               Cow position:chrX:17956891-17956720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:8-184
               
               
               Cow position:chrX:24170523-24170702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):47, 113

               
               
               Conread position:8-184
               
               
               Cow position:chrX:24365620-24365794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:8-184
               
               
               Cow position:chrX:25037194-25037014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:8-184
               
               
               Cow position:chrX:27511623-27511455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:8-184
               
               
               Cow position:chrX:28877964-28878147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:8-184
               
               
               Cow position:chrX:29478924-29478751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:8-184
               
               
               Cow position:chrX:35382840-35383009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:8-184
               
               
               Cow position:chrX:35658999-35658826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:8-184
               
               
               Cow position:chrX:38094321-38094489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):7, 46

               
               
               Conread position:8-184
               
               
               Cow position:chrX:38218915-38218741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):99, 53

               
               
               Conread position:8-184
               
               
               Cow position:chrX:38964299-38964135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:8-184
               
               
               Cow position:chrX:40108311-40108492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:8-184
               
               
               Cow position:chrX:40680817-40680641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:143
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-184
               
               
               Cow position:chrX:41068922-41068752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-184
               
               
               Cow position:chrX:41809973-41810141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-184
               
               
               Cow position:chrX:42246979-42247155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:146
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-184
               
               
               Cow position:chrX:42836383-42836208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:8-184
               
               
               Cow position:chrX:45598406-45598576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:8-184
               
               
               Cow position:chrX:48558948-48558773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:8-185
               
               
               Cow position:chrX:16762970-16762797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):107, 47

               
               
               Conread position:8-185
               
               
               Cow position:chrX:19965193-19965370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-185
               
               
               Cow position:chrX:27446885-27446712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:8-185
               
               
               Cow position:chrX:31489723-31489546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:142
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-185
               
               
               Cow position:chrX:32821242-32821055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):47, 168

               
               
               Conread position:8-191
               
               
               Cow position:chrX:4559936-4559759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:8-191
               
               
               Cow position:chrX:10516456-10516273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-191
               
               
               Cow position:chrX:13122146-13121958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:8-191
               
               
               Cow position:chrX:17524181-17524364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-191
               
               
               Cow position:chrX:20152050-20151880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:8-191
               
               
               Cow position:chrX:22115112-22115297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:8-191
               
               
               Cow position:chrX:27705789-27705606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):10, 22

               
               
               Conread position:8-191
               
               
               Cow position:chrX:30672182-30672376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:8-191
               
               
               Cow position:chrX:33001100-33000925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):83, 47

               
               
               Conread position:8-191
               
               
               Cow position:chrX:35885530-35885707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:8-191
               
               
               Cow position:chrX:42855665-42855478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:152
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:8-192
               
               
               Cow position:chrX:16763728-16763908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):154, 47

               
               
               Conread position:8-193
               
               
               Cow position:chrX:42492319-42492505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:149
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):48, 87

               
               
               Conread position:8-197
               
               
               Cow position:chrX:41453501-41453317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:8-199
               
               
               Cow position:chrX:40649104-40648908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):41, 148

               
               
               Conread position:8-201
               
               
               Cow position:chrX:51700-51887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):182, 68

               
               
               Conread position:8-203
               
               
               Cow position:chrX:4612669-4612874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):56, 95

               
               
               Conread position:8-205
               
               
               Cow position:chrX:19356666-19356476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):151, 122

               
               
               Conread position:8-206
               
               
               Cow position:chrX:35620907-35620709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-208
               
               
               Cow position:chrX:13924063-13923869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):192, 48

               
               
               Conread position:8-208
               
               
               Cow position:chrX:35285376-35285177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:156
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):187, 0

               
               
               Conread position:8-210
               
               
               Cow position:chrX:42539749-42539561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:8-243
               
               
               Cow position:chrX:1122344-1122572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:180
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):148, 0

               
               
               Conread position:9-171
               
               
               Cow position:chrX:41858683-41858842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):81, 46

               
               
               Conread position:9-183
               
               
               Cow position:chrX:20677568-20677394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:9-184
               
               
               Cow position:chrX:34565486-34565313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):41, 64

               
               
               Conread position:9-185
               
               
               Cow position:chrX:32235545-32235716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:10-161
               
               
               Cow position:chrX:7337043-7336891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:10-161
               
               
               Cow position:chrX:10237713-10237863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:10-173
               
               
               Cow position:chrX:41435342-41435511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:10-179
               
               
               Cow position:chrX:36722613-36722773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:10-182
               
               
               Cow position:chrX:28850918-28850758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:10-182
               
               
               Cow position:chrX:38587642-38587814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:10-183
               
               
               Cow position:chrX:21672762-21672582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:10-184
               
               
               Cow position:chrX:10831281-10831463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):44, 109

               
               
               Conread position:10-184
               
               
               Cow position:chrX:11762811-11762974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:10-191
               
               
               Cow position:chrX:19018628-19018811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:11-131
               
               
               Cow position:chrX:37717921-37717802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:11-135
               
               
               Cow position:chrX:3543064-3542932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:11-144
               
               
               Cow position:chrX:4366544-4366407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):106, 57

               
               
               Conread position:11-145
               
               
               Cow position:chrX:24633893-24633761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:109
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:11-148
               
               
               Cow position:chrX:11529537-11529406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:11-149
               
               
               Cow position:chrX:37867632-37867494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-154
               
               
               Cow position:chrX:27175199-27175055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:11-161
               
               
               Cow position:chrX:12942-12800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:11-163
               
               
               Cow position:chrX:5063437-5063292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):146, 61

               
               
               Conread position:11-164
               
               
               Cow position:chrX:47063069-47063228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):46, 148

               
               
               Conread position:11-169
               
               
               Cow position:chrX:46068564-46068717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:11-171
               
               
               Cow position:chrX:4768927-4768774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):157, 44

               
               
               Conread position:11-173
               
               
               Cow position:chrX:8869205-8869364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):80, 51

               
               
               Conread position:11-173
               
               
               Cow position:chrX:44123448-44123293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:11-176
               
               
               Cow position:chrX:31436668-31436509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-177
               
               
               Cow position:chrX:5876302-5876141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:11-177
               
               
               Cow position:chrX:35681766-35681602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:11-178
               
               
               Cow position:chrX:46533105-46533272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-179
               
               
               Cow position:chrX:20957438-20957270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-179
               
               
               Cow position:chrX:48822143-48822310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:138
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:11-180
               
               
               Cow position:chrX:31294370-31294541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:11-180
               
               
               Cow position:chrX:39427099-39427268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-181
               
               
               Cow position:chrX:36283539-36283370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:11-182
               
               
               Cow position:chrX:11781446-11781282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):65, 81

               
               
               Conread position:11-182
               
               
               Cow position:chrX:15546080-15545911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:11-182
               
               
               Cow position:chrX:27145798-27145633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-182
               
               
               Cow position:chrX:34504854-34505020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):122, 50

               
               
               Conread position:11-183
               
               
               Cow position:chrX:4327984-4328155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:11-183
               
               
               Cow position:chrX:7648214-7648382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):67, 79

               
               
               Conread position:11-183
               
               
               Cow position:chrX:11859337-11859509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):66, 117

               
               
               Conread position:11-183
               
               
               Cow position:chrX:15006960-15007121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:11-183
               
               
               Cow position:chrX:34554923-34554751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-183
               
               
               Cow position:chrX:43008809-43008637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-183
               
               
               Cow position:chrX:44339121-44339293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):40, 149

               
               
               Conread position:11-183
               
               
               Cow position:chrX:48474108-48473935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:11-184
               
               
               Cow position:chrX:20677948-20678111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:11-184
               
               
               Cow position:chrX:36356303-36356139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:11-184
               
               
               Cow position:chrX:38549645-38549472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):151, 34

               
               
               Conread position:11-184
               
               
               Cow position:chrX:47755845-47756013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:11-191
               
               
               Cow position:chrX:4268871-4269045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):147, 43

               
               
               Conread position:11-191
               
               
               Cow position:chrX:27261390-27261211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:150
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):137, 44

               
               
               Conread position:11-206
               
               
               Cow position:chrX:31250695-31250887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):163, 0

               
               
               Conread position:12-145
               
               
               Cow position:chrX:33466823-33466690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):32, 66

               
               
               Conread position:12-149
               
               
               Cow position:chrX:11602286-11602421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:12-153
               
               
               Cow position:chrX:39094132-39094264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-171
               
               
               Cow position:chrX:42380913-42381072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):53, 8

               
               
               Conread position:12-173
               
               
               Cow position:chrX:6480397-6480558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-173
               
               
               Cow position:chrX:13177283-13177438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:12-175
               
               
               Cow position:chrX:36976150-36975987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-176
               
               
               Cow position:chrX:10279074-10278899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:12-179
               
               
               Cow position:chrX:8327103-8326936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-181
               
               
               Cow position:chrX:21593490-21593317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):58, 141

               
               
               Conread position:12-181
               
               
               Cow position:chrX:30958929-30958756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:12-181
               
               
               Cow position:chrX:37749791-37749953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-181
               
               
               Cow position:chrX:42894120-42893956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:12-182
               
               
               Cow position:chrX:169343-169516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):58, 152

               
               
               Conread position:12-182
               
               
               Cow position:chrX:9634991-9635161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):43, 62

               
               
               Conread position:12-182
               
               
               Cow position:chrX:12979637-12979805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-182
               
               
               Cow position:chrX:20168756-20168587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:12-182
               
               
               Cow position:chrX:34238921-34238748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:12-183
               
               
               Cow position:chrX:25035183-25035354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-183
               
               
               Cow position:chrX:25207663-25207827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:12-183
               
               
               Cow position:chrX:31250588-31250416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:12-183
               
               
               Cow position:chrX:37956046-37955875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-183
               
               
               Cow position:chrX:41238164-41238326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:12-183
               
               
               Cow position:chrX:48118538-48118704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:12-184
               
               
               Cow position:chrX:34792122-34792284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:12-184
               
               
               Cow position:chrX:38302012-38301836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:12-184
               
               
               Cow position:chrX:39220284-39220106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:12-187
               
               
               Cow position:chrX:13347467-13347298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:12-191
               
               
               Cow position:chrX:42282775-42282597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):150, 109

               
               
               Conread position:12-191
               
               
               Cow position:chrX:44192244-44192427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:12-193
               
               
               Cow position:chrX:42331474-42331301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):173, 41

               
               
               Conread position:12-196
               
               
               Cow position:chrX:7351502-7351315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):43, 144

               
               
               Conread position:12-197
               
               
               Cow position:chrX:19717712-19717535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:12-199
               
               
               Cow position:chrX:34398585-34398771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):172, 0

               
               
               Conread position:12-210
               
               
               Cow position:chrX:32747923-32747729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):144, 41

               
               
               Conread position:12-214
               
               
               Cow position:chrX:47100396-47100600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):60, 155

               
               
               Conread position:13-148
               
               
               Cow position:chrX:231824-231955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:13-154
               
               
               Cow position:chrX:35986017-35985875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):42, 86

               
               
               Conread position:13-160
               
               
               Cow position:chrX:11781646-11781502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):121, 50

               
               
               Conread position:14-153
               
               
               Cow position:chrX:5118302-5118440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:14-168
               
               
               Cow position:chrX:5679734-5679889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:14-175
               
               
               Cow position:chrX:29451349-29451514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):64, 161

               
               
               Conread position:14-182
               
               
               Cow position:chrX:31442643-31442800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:14-183
               
               
               Cow position:chrX:1719304-1719143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:14-183
               
               
               Cow position:chrX:4278921-4279090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):14, 41

               
               
               Conread position:14-183
               
               
               Cow position:chrX:15147001-15147165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:14-183
               
               
               Cow position:chrX:26979593-26979761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):67, 116

               
               
               Conread position:14-183
               
               
               Cow position:chrX:46910006-46909843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:14-184
               
               
               Cow position:chrX:26205258-26205421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:14-184
               
               
               Cow position:chrX:41027356-41027186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:141
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-184
               
               
               Cow position:chrX:46532294-46532468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:15-158
               
               
               Cow position:chrX:41011087-41010951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:15-181
               
               
               Cow position:chrX:4092120-4091954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:15-184
               
               
               Cow position:chrX:21328109-21327938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:16-149
               
               
               Cow position:chrX:21288411-21288546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):88, 48

               
               
               Conread position:17-201
               
               
               Cow position:chrX:18964632-18964812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):38, 137

               
               
               Conread position:18-156
               
               
               Cow position:chrX:40543336-40543466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:18-181
               
               
               Cow position:chrX:20887453-20887611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):72, 37

               
               
               Conread position:18-184
               
               
               Cow position:chrX:20339701-20339865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:18-184
               
               
               Cow position:chrX:32318493-32318332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):140, 31

               
               
               Conread position:18-184
               
               
               Cow position:chrX:39180041-39180206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:18-186
               
               
               Cow position:chrX:45929563-45929395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:18-191
               
               
               Cow position:chrX:23188597-23188760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:19-135
               
               
               Cow position:chrX:36961909-36961792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):48, 36

               
               
               Conread position:19-148
               
               
               Cow position:chrX:756115-755987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:19-149
               
               
               Cow position:chrX:26692411-26692273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:19-160
               
               
               Cow position:chrX:30041901-30042039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:19-166
               
               
               Cow position:chrX:42311852-42311716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:19-170
               
               
               Cow position:chrX:31252599-31252449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:19-178
               
               
               Cow position:chrX:29733391-29733559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:19-183
               
               
               Cow position:chrX:29544691-29544849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-183
               
               
               Cow position:chrX:30133129-30133290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:19-184
               
               
               Cow position:chrX:41878742-41878903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):10, 17

               
               
               Conread position:19-185
               
               
               Cow position:chrX:23098018-23098178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):82, 95

               
               
               Conread position:19-191
               
               
               Cow position:chrX:45968337-45968168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-193
               
               
               Cow position:chrX:46982942-46983124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:20-148
               
               
               Cow position:chrX:42087018-42086890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:20-154
               
               
               Cow position:chrX:4515878-4515748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):64, 35

               
               
               Conread position:20-178
               
               
               Cow position:chrX:45950703-45950855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:20-201
               
               
               Cow position:chrX:28865814-28865992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):31, 50

               
               
               Conread position:21-155
               
               
               Cow position:chrX:43115338-43115206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:21-183
               
               
               Cow position:chrX:35392114-35392266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:22-149
               
               
               Cow position:chrX:17795168-17795043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:22-183
               
               
               Cow position:chrX:7179079-7178925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:25-183
               
               
               Cow position:chrX:44656777-44656929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:27-176
               
               
               Cow position:chrX:27270556-27270410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):90, 28

               
               
               Conread position:29-156
               
               
               Cow position:chrX:20977326-20977454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:29-167
               
               
               Cow position:chrX:43143869-43143728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:29-183
               
               
               Cow position:chrX:33204787-33204941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:29-184
               
               
               Cow position:chrX:16575294-16575139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:29-187
               
               
               Cow position:chrX:34315703-34315543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):41, 37

               
               
               Conread position:33-184
               
               
               Cow position:chrX:38226932-38227080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:34-184
               
               
               Cow position:chrX:23113459-23113312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:35-184
               
               
               Cow position:chrX:35269031-35268892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:36-185
               
               
               Cow position:chrX:6599609-6599756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:39-181
               
               
               Cow position:chrX:23860822-23860964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):31, 8

               
               
               Conread position:39-183
               
               
               Cow position:chrX:14599704-14599565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:39-183
               
               
               Cow position:chrX:36313835-36313978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:41-184
               
               
               Cow position:chrX:37062416-37062558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):50, 23

               
               
               Conread position:41-248
               
               
               Cow position:chrX:25459562-25459766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):66, 14

               
               
               Conread position:44-177
               
               
               Cow position:chrX:38208378-38208510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:45-191
               
               
               Cow position:chrX:31829295-31829441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:46-184
               
               
               Cow position:chrX:6259985-6260120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:48-148
               
               
               Cow position:chrX:16481407-16481507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:83
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-150
               
               
               Cow position:chrX:23187430-23187532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:85
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-161
               
               
               Cow position:chrX:2742180-2742291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:91
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:48-163
               
               
               Cow position:chrX:7107666-7107551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):27, 113

               
               
               Conread position:48-164
               
               
               Cow position:chrX:43014510-43014626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-181
               
               
               Cow position:chrX:11582386-11582253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):20, 111

               
               
               Conread position:48-182
               
               
               Cow position:chrX:6690093-6690231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:48-182
               
               
               Cow position:chrX:29680097-29680232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:48-182
               
               
               Cow position:chrX:40531880-40532014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-183
               
               
               Cow position:chrX:23574816-23574683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:48-184
               
               
               Cow position:chrX:23498519-23498650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:48-184
               
               
               Cow position:chrX:23785811-23785674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):22, 79

               
               
               Conread position:48-184
               
               
               Cow position:chrX:27393863-27393999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-184
               
               
               Cow position:chrX:41270823-41270959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-187
               
               
               Cow position:chrX:9365513-9365652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-191
               
               
               Cow position:chrX:37129432-37129289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-191
               
               
               Cow position:chrX:42235362-42235504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:48-201
               
               
               Cow position:chrX:43730061-43730212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:49-183
               
               
               Cow position:chrX:4043705-4043836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:50-177
               
               
               Cow position:chrX:43116888-43116759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:50-183
               
               
               Cow position:chrX:6278337-6278470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:106
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:51-164
               
               
               Cow position:chrX:8797409-8797296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:91
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:51-181
               
               
               Cow position:chrX:9416524-9416654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:51-183
               
               
               Cow position:chrX:21665082-21665213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:51-183
               
               
               Cow position:chrX:31373696-31373564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:51-184
               
               
               Cow position:chrX:5872477-5872344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:51-191
               
               
               Cow position:chrX:15820754-15820615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:51-193
               
               
               Cow position:chrX:33640135-33639993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:52-184
               
               
               Cow position:chrX:42873544-42873414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):63, 101

               
               
               Conread position:53-182
               
               
               Cow position:chrX:31626821-31626944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:53-183
               
               
               Cow position:chrX:46433650-46433519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:104
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:55-161
               
               
               Cow position:chrX:25238519-25238413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:86
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:55-167
               
               
               Cow position:chrX:6463754-6463641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:95
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:55-176
               
               
               Cow position:chrX:31312185-31312064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:94
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:55-182
               
               
               Cow position:chrX:29562930-29563053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:55-184
               
               
               Cow position:chrX:23266570-23266442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:55-191
               
               
               Cow position:chrX:19097064-19097204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):96, 21

               
               
               Conread position:56-179
               
               
               Cow position:chrX:27667580-27667457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:101
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-182
               
               
               Cow position:chrX:11181041-11181167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-183
               
               
               Cow position:chrX:27296365-27296500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:56-184
               
               
               Cow position:chrX:6222972-6223101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:56-184
               
               
               Cow position:chrX:17888268-17888392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:56-184
               
               
               Cow position:chrX:40355186-40355062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:56-185
               
               
               Cow position:chrX:11717628-11717757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:57-161
               
               
               Cow position:chrX:25282885-25282988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:57-184
               
               
               Cow position:chrX:25412059-25411934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:57-203
               
               
               Cow position:chrX:23092027-23091879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):25, 139

               
               
               Conread position:58-167
               
               
               Cow position:chrX:36039551-36039442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:90
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):103, 13

               
               
               Conread position:58-177
               
               
               Cow position:chrX:20879163-20879280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:95
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:59-182
               
               
               Cow position:chrX:23562784-23562661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:95
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:59-184
               
               
               Cow position:chrX:38728886-38728761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:100
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-164
               
               
               Cow position:chrX:30831184-30831286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:84
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-179
               
               
               Cow position:chrX:17966487-17966373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:95
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:64-181
               
               
               Cow position:chrX:2551239-2551121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:64-191
               
               
               Cow position:chrX:5900609-5900486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:65-191
               
               
               Cow position:chrX:22914896-22915020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:66-167
               
               
               Cow position:chrX:47168437-47168538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:84
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:67-161
               
               
               Cow position:chrX:24547357-24547451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:84
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:67-183
               
               
               Cow position:chrX:47342259-47342144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:67-187
               
               
               Cow position:chrX:10076115-10075997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:99
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:69-187
               
               
               Cow position:chrX:20743746-20743628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:70-191
               
               
               Cow position:chrX:29553426-29553305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:97
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:72-193
               
               
               Cow position:chrX:24054816-24054694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):105, 101

               
               
               Conread position:77-183
               
               
               Cow position:chrX:16830354-16830252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:81-184
               
               
               Cow position:chrX:19690345-19690242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:88
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:86-183
               
               
               Cow position:chrX:25211053-25210957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:82
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:192-844
               
               
               Cow position:chrX:9757689-9758343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:674
               
               
               Alignm identity:554
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 62

               
               
               Conread position:192-844
               
               
               Cow position:chrX:9762124-9761473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:674
               
               
               Alignm identity:550
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 62