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Cow genome map

           
Conread name:
           
Ss1.1-Mixn-0004k05.5
        

               
Conread position:
               
135-634
               

               
Cow position:
               
chr10:8996588-8996092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
53, 57
               

               
Conread position:
               
135-635
               

               
Cow position:
               
chr10:21939156-21938661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
80, 73
               

               
Conread position:
               
153-621
               

               
Cow position:
               
chr10:9010550-9010085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
113, 142
               

               
Conread position:
               
260-590
               

               
Cow position:
               
chr10:8996797-8996473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
60, 17
               

               
Conread position:
               
301-591
               

               
Cow position:
               
chr10:9010489-9010200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
54, 49
               

               
Conread position:
               
301-628
               

               
Cow position:
               
chr10:8996341-8996014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
19, 24
               

               
Conread position:
               
301-640
               

               
Cow position:
               
chr10:8996509-8996170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
19, 24
               

               
Conread position:
               
301-641
               

               
Cow position:
               
chr10:21939161-21938821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
118, 95
               

               
Conread position:
               
321-591
               

               
Cow position:
               
chr10:21939225-21938956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
116, 110
               

               
Conread position:
               
324-639
               

               
Cow position:
               
chr10:8996654-8996339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
119, 124
               

               
Conread position:
               
324-640
               

               
Cow position:
               
chr10:8996570-8996254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
292, 258
               

               
Conread position:
               
362-640
               

               
Cow position:
               
chr10:8996784-8996506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
70, 86
               

               
Conread position:
               
135-634
               

               
Cow position:
               
chr11:74554763-74554267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
143, 127
               

               
Conread position:
               
135-640
               

               
Cow position:
               
chr11:74554931-74554429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
31, 26
               

               
Conread position:
               
135-641
               

               
Cow position:
               
chr11:74554847-74554344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
131, 145
               

               
Conread position:
               
270-627
               

               
Cow position:
               
chr11:74554547-74554191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
13, 36
               

               
Conread position:
               
301-641
               

               
Cow position:
               
chr11:74555020-74554680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
19, 24
               

               
Conread position:
               
353-641
               

               
Cow position:
               
chr11:74555052-74554764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
85, 95
               

               
Conread position:
               
135-562
               

               
Cow position:
               
chr13:22124934-22125358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
125, 151
               

               
Conread position:
               
135-562
               

               
Cow position:
               
chr13:24162660-24163084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
125, 149
               

               
Conread position:
               
135-635
               

               
Cow position:
               
chr13:22125354-22125851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
72, 125
               

               
Conread position:
               
135-635
               

               
Cow position:
               
chr13:24163080-24163577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
72, 125
               

               
Conread position:
               
135-639
               

               
Cow position:
               
chr13:24162996-24163495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
456, 125
               

               
Conread position:
               
135-655
               

               
Cow position:
               
chr13:22125270-22125784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
456, 125
               

               
Conread position:
               
143-641
               

               
Cow position:
               
chr13:22124858-22125353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
102, 108
               

               
Conread position:
               
143-641
               

               
Cow position:
               
chr13:22125024-22125521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
8, 152
               

               
Conread position:
               
143-641
               

               
Cow position:
               
chr13:24162584-24163079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
102, 108
               

               
Conread position:
               
143-641
               

               
Cow position:
               
chr13:24162836-24163331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
64, 70
               

               
Conread position:
               
150-563
               

               
Cow position:
               
chr13:22125201-22125611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
34, 30
               

               
Conread position:
               
150-563
               

               
Cow position:
               
chr13:24162927-24163337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
34, 30
               

               
Conread position:
               
150-641
               

               
Cow position:
               
chr13:39930668-39931154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
34, 30
               

               
Conread position:
               
257-641
               

               
Cow position:
               
chr13:39930689-39931072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
7, 38
               

               
Conread position:
               
273-641
               

               
Cow position:
               
chr13:39930623-39930988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
82, 20
               

               
Conread position:
               
301-641
               

               
Cow position:
               
chr13:22124761-22125101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
290, 300
               

               
Conread position:
               
301-641
               

               
Cow position:
               
chr13:22124845-22125185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
23, 17
               

               
Conread position:
               
301-641
               

               
Cow position:
               
chr13:24162487-24162827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
290, 300
               

               
Conread position:
               
301-641
               

               
Cow position:
               
chr13:24162571-24162911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
224, 217
               

               
Conread position:
               
323-641
               

               
Cow position:
               
chr13:24162425-24162743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
101, 111
               

               
Conread position:
               
127-477
               

               
Cow position:
               
chr14:3080004-3079657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
151, 11
               

               
Conread position:
               
131-641
               

               
Cow position:
               
chr14:3128017-3127511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
134, 8
               

               
Conread position:
               
134-640
               

               
Cow position:
               
chr14:680735-681237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
144, 6
               

               
Conread position:
               
134-641
               

               
Cow position:
               
chr14:3080586-3080083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
186, 6
               

               
Conread position:
               
135-568
               

               
Cow position:
               
chr14:25895878-25896308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
51, 78
               

               
Conread position:
               
135-569
               

               
Cow position:
               
chr14:25895374-25895805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
135, 121
               

               
Conread position:
               
135-580
               

               
Cow position:
               
chr14:447765-448207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
189, 159
               

               
Conread position:
               
135-580
               

               
Cow position:
               
chr14:3061733-3061291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
161, 0
               

               
Conread position:
               
135-590
               

               
Cow position:
               
chr14:3080166-3079715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
143, 128
               

               
Conread position:
               
135-639
               

               
Cow position:
               
chr14:3127762-3127260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
185, 161
               

               
Conread position:
               
135-640
               

               
Cow position:
               
chr14:3080502-3080000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 135
               

               
Conread position:
               
135-640
               

               
Cow position:
               
chr14:25836391-25836893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
79, 73
               

               
Conread position:
               
135-641
               

               
Cow position:
               
chr14:447681-448184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 80
               

               
Conread position:
               
135-641
               

               
Cow position:
               
chr14:3080250-3079747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 161
               

               
Conread position:
               
135-641
               

               
Cow position:
               
chr14:3080418-3079915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
216, 128
               

               
Conread position:
               
135-641
               

               
Cow position:
               
chr14:3080754-3080251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 158
               

               
Conread position:
               
135-641
               

               
Cow position:
               
chr14:3080921-3080419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
37, 5
               

               
Conread position:
               
135-641
               

               
Cow position:
               
chr14:3127846-3127343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
143, 128
               

               
Conread position:
               
135-641
               

               
Cow position:
               
chr14:3128098-3127595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 79
               

               
Conread position:
               
135-641
               

               
Cow position:
               
chr14:25895122-25895625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
43, 47
               

               
Conread position:
               
136-638
               

               
Cow position:
               
chr14:680232-680731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
142, 127
               

               
Conread position:
               
138-539
               

               
Cow position:
               
chr14:447852-448250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
158, 0
               

               
Conread position:
               
139-641
               

               
Cow position:
               
chr14:433822-434321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
139, 131
               

               
Conread position:
               
141-547
               

               
Cow position:
               
chr14:3156080-3156483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
24, 35
               

               
Conread position:
               
149-586
               

               
Cow position:
               
chr14:680833-681266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
341, 144
               

               
Conread position:
               
149-635
               

               
Cow position:
               
chr14:433916-434400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
446, 121
               

               
Conread position:
               
150-642
               

               
Cow position:
               
chr14:680498-680987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
106, 127
               

               
Conread position:
               
238-640
               

               
Cow position:
               
chr14:25895729-25896128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
200, 58
               

               
Conread position:
               
269-641
               

               
Cow position:
               
chr14:25877298-25877670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
98, 77
               

               
Conread position:
               
277-568
               

               
Cow position:
               
chr14:25895012-25895300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
39, 16
               

               
Conread position:
               
277-641
               

               
Cow position:
               
chr14:3155475-3155836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
42, 19
               

               
Conread position:
               
287-641
               

               
Cow position:
               
chr14:25876563-25876914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
148, 16
               

               
Conread position:
               
295-641
               

               
Cow position:
               
chr14:25895447-25895793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
69, 51
               

               
Conread position:
               
297-569
               

               
Cow position:
               
chr14:25877495-25877766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
140, 6
               

               
Conread position:
               
297-590
               

               
Cow position:
               
chr14:3156066-3156357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
23, 12
               

               
Conread position:
               
297-634
               

               
Cow position:
               
chr14:25860444-25860780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
140, 6
               

               
Conread position:
               
297-639
               

               
Cow position:
               
chr14:3061070-3060728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
309, 285
               

               
Conread position:
               
297-640
               

               
Cow position:
               
chr14:25860024-25860366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
138, 11
               

               
Conread position:
               
297-641
               

               
Cow position:
               
chr14:25877075-25877418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
138, 11
               

               
Conread position:
               
297-641
               

               
Cow position:
               
chr14:25894946-25895289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
32, 6
               

               
Conread position:
               
301-517
               

               
Cow position:
               
chr14:420646-420862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
301-590
               

               
Cow position:
               
chr14:25836218-25836507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
301-620
               

               
Cow position:
               
chr14:25836890-25837209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
66, 45
               

               
Conread position:
               
301-634
               

               
Cow position:
               
chr14:3155412-3155745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 146
               

               
Conread position:
               
301-638
               

               
Cow position:
               
chr14:680478-680815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
301-639
               

               
Cow position:
               
chr14:3061150-3060812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
19, 23
               

               
Conread position:
               
301-640
               

               
Cow position:
               
chr14:25836806-25837145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
18, 23
               

               
Conread position:
               
301-640
               

               
Cow position:
               
chr14:25859271-25859610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
6, 23
               

               
Conread position:
               
301-641
               

               
Cow position:
               
chr14:3128103-3127763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
112, 97
               

               
Conread position:
               
301-641
               

               
Cow position:
               
chr14:3155901-3156241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
19, 23
               

               
Conread position:
               
301-641
               

               
Cow position:
               
chr14:25895621-25895961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
28, 17
               

               
Conread position:
               
314-634
               

               
Cow position:
               
chr14:3061725-3061405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
205, 218
               

               
Conread position:
               
314-641
               

               
Cow position:
               
chr14:3061391-3061062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
15, 136
               

               
Conread position:
               
323-560
               

               
Cow position:
               
chr14:3079897-3079660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
323-634
               

               
Cow position:
               
chr14:25895979-25896290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
324-640
               

               
Cow position:
               
chr14:25877437-25877753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
33, 40
               

               
Conread position:
               
324-641
               

               
Cow position:
               
chr14:3128164-3127847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
281, 258
               

               
Conread position:
               
353-562
               

               
Cow position:
               
chr14:3061182-3060973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
360-641
               

               
Cow position:
               
chr14:420623-420902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
362-638
               

               
Cow position:
               
chr14:447569-447845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
142, 136
               

               
Conread position:
               
363-640
               

               
Cow position:
               
chr14:25859585-25859862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
74, 82
               

               
Conread position:
               
381-639
               

               
Cow position:
               
chr14:3155408-3155666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
54, 67
               

               
Conread position:
               
301-499
               

               
Cow position:
               
chr15:19139153-19138955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
52, 46
               

               
Conread position:
               
323-640
               

               
Cow position:
               
chr16:14627140-14626823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
180, 175
               

               
Conread position:
               
135-639
               

               
Cow position:
               
chr17:41440947-41440446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
82, 73
               

               
Conread position:
               
135-640
               

               
Cow position:
               
chr17:22452373-22451871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
74, 80
               

               
Conread position:
               
135-640
               

               
Cow position:
               
chr17:22552844-22552342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
74, 80
               

               
Conread position:
               
135-641
               

               
Cow position:
               
chr17:41441115-41440612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
453, 158
               

               
Conread position:
               
138-628
               

               
Cow position:
               
chr17:22452286-22451799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
182, 144
               

               
Conread position:
               
149-634
               

               
Cow position:
               
chr17:41440849-41440367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
446, 107
               

               
Conread position:
               
151-634
               

               
Cow position:
               
chr17:22552324-22551844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
63, 57
               

               
Conread position:
               
152-641
               

               
Cow position:
               
chr17:41440678-41440192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
446, 150
               

               
Conread position:
               
257-640
               

               
Cow position:
               
chr17:22552136-22551754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
13, 48
               

               
Conread position:
               
268-640
               

               
Cow position:
               
chr17:22552459-22552090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
222, 37
               

               
Conread position:
               
269-634
               

               
Cow position:
               
chr17:22552375-22552012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
6, 35
               

               
Conread position:
               
271-640
               

               
Cow position:
               
chr17:22551868-22551502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
49, 25
               

               
Conread position:
               
273-639
               

               
Cow position:
               
chr17:22552034-22551671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
217, 23
               

               
Conread position:
               
277-577
               

               
Cow position:
               
chr17:22551778-22551481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
44, 26
               

               
Conread position:
               
295-641
               

               
Cow position:
               
chr17:22553107-22552761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
25, 30
               

               
Conread position:
               
301-634
               

               
Cow position:
               
chr17:22552513-22552180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
19, 24
               

               
Conread position:
               
301-640
               

               
Cow position:
               
chr17:22499308-22498969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
294, 281
               

               
Conread position:
               
303-641
               

               
Cow position:
               
chr17:41441118-41440780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
245, 252
               

               
Conread position:
               
361-641
               

               
Cow position:
               
chr17:22452234-22451954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
74, 51
               

               
Conread position:
               
131-641
               

               
Cow position:
               
chr18:55497702-55497194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
8, 99
               

               
Conread position:
               
134-593
               

               
Cow position:
               
chr18:56391422-56390968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
134-635
               

               
Cow position:
               
chr18:1418095-1418592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
68, 10
               

               
Conread position:
               
134-640
               

               
Cow position:
               
chr18:53635531-53635030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
144, 6
               

               
Conread position:
               
134-640
               

               
Cow position:
               
chr18:56128634-56129135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
131, 6
               

               
Conread position:
               
134-641
               

               
Cow position:
               
chr18:52012098-52011595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
144, 6
               

               
Conread position:
               
135-583
               

               
Cow position:
               
chr18:49032533-49032088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
297, 168
               

               
Conread position:
               
135-591
               

               
Cow position:
               
chr18:56494021-56494473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
83, 73
               

               
Conread position:
               
135-622
               

               
Cow position:
               
chr18:51400709-51401193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
124, 144
               

               
Conread position:
               
135-628
               

               
Cow position:
               
chr18:51400625-51401115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
27, 40
               

               
Conread position:
               
135-630
               

               
Cow position:
               
chr18:53586738-53586246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
153, 145
               

               
Conread position:
               
135-631
               

               
Cow position:
               
chr18:56329590-56329097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 51
               

               
Conread position:
               
135-635
               

               
Cow position:
               
chr18:53610206-53609709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
143, 128
               

               
Conread position:
               
135-638
               

               
Cow position:
               
chr18:56329338-56328838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
135, 121
               

               
Conread position:
               
135-640
               

               
Cow position:
               
chr18:1418011-1418513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
124, 141
               

               
Conread position:
               
135-640
               

               
Cow position:
               
chr18:42791897-42792399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
52, 87
               

               
Conread position:
               
135-640
               

               
Cow position:
               
chr18:49032953-49032451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
58, 51
               

               
Conread position:
               
135-640
               

               
Cow position:
               
chr18:56128298-56128800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
183, 161
               

               
Conread position:
               
135-641
               

               
Cow position:
               
chr18:40306346-40306849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
58, 53
               

               
Conread position:
               
135-641
               

               
Cow position:
               
chr18:42693871-42693368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
30, 43
               

               
Conread position:
               
135-641
               

               
Cow position:
               
chr18:49032785-49032282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
220, 161
               

               
Conread position:
               
135-641
               

               
Cow position:
               
chr18:49033037-49032534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
74, 80
               

               
Conread position:
               
135-641
               

               
Cow position:
               
chr18:49033289-49032786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
74, 80
               

               
Conread position:
               
135-641
               

               
Cow position:
               
chr18:52012350-52011847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
74, 80
               

               
Conread position:
               
135-641
               

               
Cow position:
               
chr18:53610290-53609787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
118, 145
               

               
Conread position:
               
135-641
               

               
Cow position:
               
chr18:53635951-53635448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
58, 51
               

               
Conread position:
               
135-641
               

               
Cow position:
               
chr18:56128214-56128717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
58, 51
               

               
Conread position:
               
135-641
               

               
Cow position:
               
chr18:56316142-56316645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
74, 80
               

               
Conread position:
               
135-641
               

               
Cow position:
               
chr18:56316310-56316813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
459, 161
               

               
Conread position:
               
135-641
               

               
Cow position:
               
chr18:56329842-56329339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
126, 133
               

               
Conread position:
               
135-641
               

               
Cow position:
               
chr18:56330010-56329507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 73
               

               
Conread position:
               
135-644
               

               
Cow position:
               
chr18:49032617-49032111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
59, 53
               

               
Conread position:
               
135-651
               

               
Cow position:
               
chr18:55497529-55497019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
52, 58
               

               
Conread position:
               
136-590
               

               
Cow position:
               
chr18:50246339-50246789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
129, 120
               

               
Conread position:
               
137-631
               

               
Cow position:
               
chr18:55067099-55066608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
47, 42
               

               
Conread position:
               
139-640
               

               
Cow position:
               
chr18:51400377-51400875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
118, 141
               

               
Conread position:
               
142-641
               

               
Cow position:
               
chr18:56316569-56317065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
136, 120
               

               
Conread position:
               
149-640
               

               
Cow position:
               
chr18:49033191-49032703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
291, 114
               

               
Conread position:
               
150-641
               

               
Cow position:
               
chr18:50059179-50058691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
15, 33
               

               
Conread position:
               
151-641
               

               
Cow position:
               
chr18:56329406-56328919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
37, 42
               

               
Conread position:
               
177-630
               

               
Cow position:
               
chr18:43168095-43168545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
337, 126
               

               
Conread position:
               
233-641
               

               
Cow position:
               
chr18:56329576-56329171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
202, 63
               

               
Conread position:
               
234-641
               

               
Cow position:
               
chr18:56128649-56129053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
85, 59
               

               
Conread position:
               
244-640
               

               
Cow position:
               
chr18:42985274-42984881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
13, 32
               

               
Conread position:
               
256-639
               

               
Cow position:
               
chr18:33064808-33064428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
248, 40
               

               
Conread position:
               
256-641
               

               
Cow position:
               
chr18:49022608-49022990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
61, 35
               

               
Conread position:
               
266-631
               

               
Cow position:
               
chr18:53559982-53560344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
59, 34
               

               
Conread position:
               
266-640
               

               
Cow position:
               
chr18:33093050-33092679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
54, 27
               

               
Conread position:
               
269-635
               

               
Cow position:
               
chr18:42693906-42693542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
5, 25
               

               
Conread position:
               
270-590
               

               
Cow position:
               
chr18:50083930-50084246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
49, 33
               

               
Conread position:
               
272-630
               

               
Cow position:
               
chr18:50848817-50849172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
48, 31
               

               
Conread position:
               
277-591
               

               
Cow position:
               
chr18:33064619-33064309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
43, 26
               

               
Conread position:
               
277-639
               

               
Cow position:
               
chr18:50083853-50084212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
42, 26
               

               
Conread position:
               
277-640
               

               
Cow position:
               
chr18:33064031-33063671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
78, 19
               

               
Conread position:
               
277-640
               

               
Cow position:
               
chr18:50271612-50271972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
42, 26
               

               
Conread position:
               
277-641
               

               
Cow position:
               
chr18:33064535-33064174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
42, 26
               

               
Conread position:
               
279-641
               

               
Cow position:
               
chr18:56330118-56329759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
41, 26
               

               
Conread position:
               
283-580
               

               
Cow position:
               
chr18:56316542-56316836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
35, 13
               

               
Conread position:
               
284-591
               

               
Cow position:
               
chr18:40306663-40306966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
73, 12
               

               
Conread position:
               
284-636
               

               
Cow position:
               
chr18:56267470-56267120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
348, 12
               

               
Conread position:
               
284-641
               

               
Cow position:
               
chr18:53635634-53635280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
311, 9
               

               
Conread position:
               
284-641
               

               
Cow position:
               
chr18:56128531-56128885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
311, 9
               

               
Conread position:
               
285-640
               

               
Cow position:
               
chr18:50059380-50059028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
60, 22
               

               
Conread position:
               
285-640
               

               
Cow position:
               
chr18:50059464-50059112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
55, 11
               

               
Conread position:
               
285-640
               

               
Cow position:
               
chr18:50281917-50282269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
20, 32
               

               
Conread position:
               
287-589
               

               
Cow position:
               
chr18:55523553-55523851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
51, 13
               

               
Conread position:
               
287-631
               

               
Cow position:
               
chr18:55523637-55523978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
33, 16
               

               
Conread position:
               
295-568
               

               
Cow position:
               
chr18:44398441-44398168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
25, 30
               

               
Conread position:
               
295-640
               

               
Cow position:
               
chr18:43167790-43168135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
25, 30
               

               
Conread position:
               
295-640
               

               
Cow position:
               
chr18:43168126-43168471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
25, 30
               

               
Conread position:
               
295-641
               

               
Cow position:
               
chr18:33064352-33064006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
24, 30
               

               
Conread position:
               
295-641
               

               
Cow position:
               
chr18:49022728-49023074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
25, 30
               

               
Conread position:
               
295-641
               

               
Cow position:
               
chr18:50848669-50849015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
17, 12
               

               
Conread position:
               
295-642
               

               
Cow position:
               
chr18:53525858-53526204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
135, 117
               

               
Conread position:
               
296-641
               

               
Cow position:
               
chr18:49033383-49033038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
57, 44
               

               
Conread position:
               
297-607
               

               
Cow position:
               
chr18:53498478-53498786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
130, 6
               

               
Conread position:
               
297-622
               

               
Cow position:
               
chr18:44397850-44397526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
142, 12
               

               
Conread position:
               
297-639
               

               
Cow position:
               
chr18:42791049-42791390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
24, 9
               

               
Conread position:
               
297-640
               

               
Cow position:
               
chr18:1418003-1418345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
193, 6
               

               
Conread position:
               
297-640
               

               
Cow position:
               
chr18:41198248-41198590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
23, 12
               

               
Conread position:
               
297-641
               

               
Cow position:
               
chr18:49022815-49023158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
291, 6
               

               
Conread position:
               
297-641
               

               
Cow position:
               
chr18:53586410-53586067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
23, 6
               

               
Conread position:
               
300-639
               

               
Cow position:
               
chr18:14454017-14453680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
19, 25
               

               
Conread position:
               
300-640
               

               
Cow position:
               
chr18:42744462-42744122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
135, 148
               

               
Conread position:
               
300-640
               

               
Cow position:
               
chr18:43093499-43093159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
20, 24
               

               
Conread position:
               
300-640
               

               
Cow position:
               
chr18:43093667-43093327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
42, 53
               

               
Conread position:
               
300-641
               

               
Cow position:
               
chr18:50848422-50848763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
20, 25
               

               
Conread position:
               
301-506
               

               
Cow position:
               
chr18:49032286-49032081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
134, 111
               

               
Conread position:
               
301-578
               

               
Cow position:
               
chr18:49021739-49022016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
19, 23
               

               
Conread position:
               
301-590
               

               
Cow position:
               
chr18:33064850-33064562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
139, 130
               

               
Conread position:
               
301-590
               

               
Cow position:
               
chr18:41197579-41197867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
66, 29
               

               
Conread position:
               
301-590
               

               
Cow position:
               
chr18:52447868-52448156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
137, 147
               

               
Conread position:
               
301-590
               

               
Cow position:
               
chr18:53610295-53610007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
19, 23
               

               
Conread position:
               
301-590
               

               
Cow position:
               
chr18:53635704-53635416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
17, 23
               

               
Conread position:
               
301-628
               

               
Cow position:
               
chr18:42674729-42674402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
138, 147
               

               
Conread position:
               
301-628
               

               
Cow position:
               
chr18:43093162-43092835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
137, 147
               

               
Conread position:
               
301-631
               

               
Cow position:
               
chr18:42744293-42743963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
136, 147
               

               
Conread position:
               
301-631
               

               
Cow position:
               
chr18:42792564-42792894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
18, 24
               

               
Conread position:
               
301-634
               

               
Cow position:
               
chr18:50058863-50058530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
291, 281
               

               
Conread position:
               
301-634
               

               
Cow position:
               
chr18:52012103-52011770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
53, 29
               

               
Conread position:
               
301-637
               

               
Cow position:
               
chr18:42837428-42837092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
54, 42
               

               
Conread position:
               
301-640
               

               
Cow position:
               
chr18:14453932-14453593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
137, 147
               

               
Conread position:
               
301-640
               

               
Cow position:
               
chr18:33064178-33063839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
19, 23
               

               
Conread position:
               
301-640
               

               
Cow position:
               
chr18:33064430-33064091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
54, 29
               

               
Conread position:
               
301-640
               

               
Cow position:
               
chr18:41198167-41198506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
19, 24
               

               
Conread position:
               
301-640
               

               
Cow position:
               
chr18:42675233-42674894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
203, 195
               

               
Conread position:
               
301-640
               

               
Cow position:
               
chr18:44398351-44398012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
134, 146
               

               
Conread position:
               
301-640
               

               
Cow position:
               
chr18:51812796-51812457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
301-640
               

               
Cow position:
               
chr18:53610379-53610040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
19, 23
               

               
Conread position:
               
301-641
               

               
Cow position:
               
chr18:1418090-1418430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
53, 29
               

               
Conread position:
               
301-641
               

               
Cow position:
               
chr18:42792228-42792568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
19, 24
               

               
Conread position:
               
301-641
               

               
Cow position:
               
chr18:49033294-49032954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
19, 24
               

               
Conread position:
               
301-641
               

               
Cow position:
               
chr18:52012019-52011679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
291, 298
               

               
Conread position:
               
301-641
               

               
Cow position:
               
chr18:52012355-52012015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
20, 24
               

               
Conread position:
               
301-641
               

               
Cow position:
               
chr18:56316053-56316393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
18, 23
               

               
Conread position:
               
301-641
               

               
Cow position:
               
chr18:56330015-56329675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
18, 23
               

               
Conread position:
               
301-642
               

               
Cow position:
               
chr18:43048724-43048383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
57, 41
               

               
Conread position:
               
302-595
               

               
Cow position:
               
chr18:53636039-53635747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
17, 22
               

               
Conread position:
               
302-634
               

               
Cow position:
               
chr18:56494017-56494349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
18, 22
               

               
Conread position:
               
302-640
               

               
Cow position:
               
chr18:56128126-56128464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
17, 22
               

               
Conread position:
               
302-641
               

               
Cow position:
               
chr18:49022233-49022572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
256, 227
               

               
Conread position:
               
302-641
               

               
Cow position:
               
chr18:53610462-53610123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
17, 22
               

               
Conread position:
               
302-641
               

               
Cow position:
               
chr18:55497617-55497278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
53, 47
               

               
Conread position:
               
303-634
               

               
Cow position:
               
chr18:53586910-53586578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
9, 23
               

               
Conread position:
               
303-640
               

               
Cow position:
               
chr18:42985302-42984965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
39, 48
               

               
Conread position:
               
308-496
               

               
Cow position:
               
chr18:50282105-50282293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
25, 34
               

               
Conread position:
               
308-640
               

               
Cow position:
               
chr18:42837841-42837509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
117, 104
               

               
Conread position:
               
310-640
               

               
Cow position:
               
chr18:41949335-41949005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
10, 15
               

               
Conread position:
               
311-641
               

               
Cow position:
               
chr18:50295202-50295532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
114, 134
               

               
Conread position:
               
312-641
               

               
Cow position:
               
chr18:50281857-50282186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
7, 13
               

               
Conread position:
               
318-641
               

               
Cow position:
               
chr18:50059601-50059279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
186, 6
               

               
Conread position:
               
319-640
               

               
Cow position:
               
chr18:42675298-42674978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
114, 5
               

               
Conread position:
               
323-640
               

               
Cow position:
               
chr18:51400642-51400959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
175, 193
               

               
Conread position:
               
324-590
               

               
Cow position:
               
chr18:55067083-55066817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
31, 10
               

               
Conread position:
               
324-634
               

               
Cow position:
               
chr18:50281785-50282095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
22, 9
               

               
Conread position:
               
324-634
               

               
Cow position:
               
chr18:56267517-56267207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
273, 259
               

               
Conread position:
               
324-639
               

               
Cow position:
               
chr18:50246272-50246587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
102, 110
               

               
Conread position:
               
324-639
               

               
Cow position:
               
chr18:50246440-50246755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
16, 26
               

               
Conread position:
               
324-640
               

               
Cow position:
               
chr18:50083309-50083625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
113, 123
               

               
Conread position:
               
324-640
               

               
Cow position:
               
chr18:50099338-50099654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
16, 25
               

               
Conread position:
               
324-640
               

               
Cow position:
               
chr18:50246356-50246672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
16, 25
               

               
Conread position:
               
324-640
               

               
Cow position:
               
chr18:51812605-51812289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
264, 258
               

               
Conread position:
               
324-644
               

               
Cow position:
               
chr18:42827431-42827749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
23, 32
               

               
Conread position:
               
328-640
               

               
Cow position:
               
chr18:51368068-51367756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
14, 44
               

               
Conread position:
               
331-639
               

               
Cow position:
               
chr18:50271578-50271887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
24, 115
               

               
Conread position:
               
331-640
               

               
Cow position:
               
chr18:50031033-50030724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
24, 15
               

               
Conread position:
               
351-581
               

               
Cow position:
               
chr18:52011801-52011571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
353-644
               

               
Cow position:
               
chr18:1417974-1418263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
283, 0
               

               
Conread position:
               
354-631
               

               
Cow position:
               
chr18:52428614-52428891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
81, 94
               

               
Conread position:
               
354-631
               

               
Cow position:
               
chr18:52433795-52434072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
81, 94
               

               
Conread position:
               
362-634
               

               
Cow position:
               
chr18:53586430-53586158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
128, 124
               

               
Conread position:
               
363-631
               

               
Cow position:
               
chr18:56248175-56247909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
229, 12
               

               
Conread position:
               
363-640
               

               
Cow position:
               
chr18:50058717-50058442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
127, 123
               

               
Conread position:
               
363-640
               

               
Cow position:
               
chr18:50059641-50059364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
135, 123
               

               
Conread position:
               
368-640
               

               
Cow position:
               
chr18:56316036-56316308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
14, 6
               

               
Conread position:
               
368-641
               

               
Cow position:
               
chr18:43048741-43048468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
75, 80
               

               
Conread position:
               
375-640
               

               
Cow position:
               
chr18:50281752-50282017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
49, 72
               

               
Conread position:
               
375-641
               

               
Cow position:
               
chr18:42792470-42792736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
241, 236
               

               
Conread position:
               
377-639
               

               
Cow position:
               
chr18:42827399-42827662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
7, 235
               

               
Conread position:
               
135-622
               

               
Cow position:
               
chr19:14940585-14941069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
183, 168
               

               
Conread position:
               
135-628
               

               
Cow position:
               
chr19:23614617-23615107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
194, 168
               

               
Conread position:
               
135-630
               

               
Cow position:
               
chr19:23649647-23650139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
185, 158
               

               
Conread position:
               
135-634
               

               
Cow position:
               
chr19:23649311-23649807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
137, 128
               

               
Conread position:
               
135-640
               

               
Cow position:
               
chr19:23596957-23597456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
134, 73
               

               
Conread position:
               
135-640
               

               
Cow position:
               
chr19:23649563-23650065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
27, 41
               

               
Conread position:
               
135-640
               

               
Cow position:
               
chr19:23649731-23650233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
65, 94
               

               
Conread position:
               
136-641
               

               
Cow position:
               
chr19:23649396-23649898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
26, 32
               

               
Conread position:
               
150-640
               

               
Cow position:
               
chr19:14960367-14959882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
59, 65
               

               
Conread position:
               
240-634
               

               
Cow position:
               
chr19:23650088-23650479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
197, 56
               

               
Conread position:
               
271-640
               

               
Cow position:
               
chr19:23597258-23597624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
161, 32
               

               
Conread position:
               
288-640
               

               
Cow position:
               
chr19:14959248-14958905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
300, 15
               

               
Conread position:
               
297-641
               

               
Cow position:
               
chr19:20678288-20678631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
54, 6
               

               
Conread position:
               
300-641
               

               
Cow position:
               
chr19:14960388-14960049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
288, 228
               

               
Conread position:
               
301-622
               

               
Cow position:
               
chr19:14948379-14948058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
19, 24
               

               
Conread position:
               
301-634
               

               
Cow position:
               
chr19:14940160-14940493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
301-639
               

               
Cow position:
               
chr19:23649978-23650316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
131, 146
               

               
Conread position:
               
301-640
               

               
Cow position:
               
chr19:23649306-23649645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
203, 197
               

               
Conread position:
               
301-641
               

               
Cow position:
               
chr19:14940664-14941004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
132, 114
               

               
Conread position:
               
301-641
               

               
Cow position:
               
chr19:23650062-23650402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
124, 111
               

               
Conread position:
               
303-587
               

               
Cow position:
               
chr19:20677705-20677988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
52, 29
               

               
Conread position:
               
323-640
               

               
Cow position:
               
chr19:14940518-14940835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
102, 89
               

               
Conread position:
               
324-640
               

               
Cow position:
               
chr19:14940015-14940331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
114, 91
               

               
Conread position:
               
324-640
               

               
Cow position:
               
chr19:23614299-23614615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
28, 11
               

               
Conread position:
               
361-631
               

               
Cow position:
               
chr19:14940136-14940406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
244, 255
               

               
Conread position:
               
363-641
               

               
Cow position:
               
chr19:23614422-23614700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
141, 134
               

               
Conread position:
               
375-640
               

               
Cow position:
               
chr19:20635555-20635290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
60, 69
               

               
Conread position:
               
135-631
               

               
Cow position:
               
chr2:82799953-82800446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
451, 161
               

               
Conread position:
               
135-640
               

               
Cow position:
               
chr2:82799785-82800287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
53, 58
               

               
Conread position:
               
135-641
               

               
Cow position:
               
chr2:82799617-82800120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
75, 90
               

               
Conread position:
               
135-641
               

               
Cow position:
               
chr2:82799701-82800204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
131, 145
               

               
Conread position:
               
143-642
               

               
Cow position:
               
chr2:5874831-5874335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
18, 49
               

               
Conread position:
               
150-641
               

               
Cow position:
               
chr2:5875076-5874588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
57, 63
               

               
Conread position:
               
230-639
               

               
Cow position:
               
chr2:82799544-82799950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
25, 29
               

               
Conread position:
               
277-641
               

               
Cow position:
               
chr2:82800011-82800372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
43, 19
               

               
Conread position:
               
283-591
               

               
Cow position:
               
chr2:5875111-5874806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
41, 13
               

               
Conread position:
               
284-640
               

               
Cow position:
               
chr2:48689553-48689201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
36, 12
               

               
Conread position:
               
285-641
               

               
Cow position:
               
chr2:82799515-82799868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
146, 17
               

               
Conread position:
               
295-640
               

               
Cow position:
               
chr2:78754996-78755340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
138, 117
               

               
Conread position:
               
301-641
               

               
Cow position:
               
chr2:5875180-5874840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
19, 24
               

               
Conread position:
               
301-641
               

               
Cow position:
               
chr2:86465184-86465524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
53, 33
               

               
Conread position:
               
303-590
               

               
Cow position:
               
chr2:48689453-48689168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
63, 40
               

               
Conread position:
               
323-506
               

               
Cow position:
               
chr2:48689350-48689167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
32, 26
               

               
Conread position:
               
437-641
               

               
Cow position:
               
chr2:82799497-82799700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
134-638
               

               
Cow position:
               
chr21:12608419-12607919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
191, 6
               

               
Conread position:
               
135-558
               

               
Cow position:
               
chr21:34222961-34222541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
74, 80
               

               
Conread position:
               
135-562
               

               
Cow position:
               
chr21:34223045-34222621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
185, 128
               

               
Conread position:
               
135-634
               

               
Cow position:
               
chr21:12608839-12608343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 80
               

               
Conread position:
               
135-639
               

               
Cow position:
               
chr21:12608755-12608254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
135-641
               

               
Cow position:
               
chr21:12658839-12659342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 0
               

               
Conread position:
               
135-641
               

               
Cow position:
               
chr21:12659007-12659510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 161
               

               
Conread position:
               
135-641
               

               
Cow position:
               
chr21:12659175-12659678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 73
               

               
Conread position:
               
135-641
               

               
Cow position:
               
chr21:12659343-12659846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 169
               

               
Conread position:
               
135-641
               

               
Cow position:
               
chr21:12659427-12659930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 0
               

               
Conread position:
               
135-641
               

               
Cow position:
               
chr21:12659511-12660014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
104, 97
               

               
Conread position:
               
138-641
               

               
Cow position:
               
chr21:12658926-12659426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 158
               

               
Conread position:
               
143-640
               

               
Cow position:
               
chr21:12608495-12608001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 136
               

               
Conread position:
               
283-641
               

               
Cow position:
               
chr21:34222981-34222626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
38, 20
               

               
Conread position:
               
296-641
               

               
Cow position:
               
chr21:12608930-12608588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
300, 16
               

               
Conread position:
               
301-641
               

               
Cow position:
               
chr21:12608844-12608504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
231, 226
               

               
Conread position:
               
301-641
               

               
Cow position:
               
chr21:12658834-12659174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
324-639
               

               
Cow position:
               
chr21:34223027-34222712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
351-641
               

               
Cow position:
               
chr21:12658800-12659090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
384-641
               

               
Cow position:
               
chr21:34223051-34222794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
135-590
               

               
Cow position:
               
chr22:12458517-12458066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
74, 81
               

               
Conread position:
               
135-640
               

               
Cow position:
               
chr22:12399837-12399335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
121, 132
               

               
Conread position:
               
144-641
               

               
Cow position:
               
chr22:12419011-12418517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
125, 118
               

               
Conread position:
               
269-644
               

               
Cow position:
               
chr22:12432442-12432069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
13, 37
               

               
Conread position:
               
277-494
               

               
Cow position:
               
chr22:11666680-11666894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
73, 19
               

               
Conread position:
               
277-590
               

               
Cow position:
               
chr22:11701334-11701643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
84, 19
               

               
Conread position:
               
277-640
               

               
Cow position:
               
chr22:11701166-11701526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
72, 19
               

               
Conread position:
               
277-640
               

               
Cow position:
               
chr22:12476324-12475964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
42, 26
               

               
Conread position:
               
277-640
               

               
Cow position:
               
chr22:12498935-12499295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
42, 26
               

               
Conread position:
               
283-589
               

               
Cow position:
               
chr22:14429717-14430020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
155, 17
               

               
Conread position:
               
288-629
               

               
Cow position:
               
chr22:12418783-12418445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
244, 15
               

               
Conread position:
               
290-641
               

               
Cow position:
               
chr22:11640850-11641200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
304, 12
               

               
Conread position:
               
292-641
               

               
Cow position:
               
chr22:12458615-12458266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
28, 32
               

               
Conread position:
               
295-590
               

               
Cow position:
               
chr22:12431828-12431533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
45, 60
               

               
Conread position:
               
297-640
               

               
Cow position:
               
chr22:12475718-12475376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
23, 12
               

               
Conread position:
               
297-640
               

               
Cow position:
               
chr22:12499541-12499883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
23, 12
               

               
Conread position:
               
297-641
               

               
Cow position:
               
chr22:12399257-12398914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
46, 12
               

               
Conread position:
               
301-584
               

               
Cow position:
               
chr22:12431234-12430951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
19, 23
               

               
Conread position:
               
301-592
               

               
Cow position:
               
chr22:14467977-14468267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
124, 111
               

               
Conread position:
               
301-640
               

               
Cow position:
               
chr22:11640944-11641283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
48, 52
               

               
Conread position:
               
301-640
               

               
Cow position:
               
chr22:11641028-11641367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
41, 52
               

               
Conread position:
               
301-640
               

               
Cow position:
               
chr22:12385328-12384989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
19, 23
               

               
Conread position:
               
301-640
               

               
Cow position:
               
chr22:12499376-12499715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
19, 24
               

               
Conread position:
               
301-640
               

               
Cow position:
               
chr22:46654099-46654438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
119, 101
               

               
Conread position:
               
301-641
               

               
Cow position:
               
chr22:12399338-12398998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
126, 114
               

               
Conread position:
               
301-641
               

               
Cow position:
               
chr22:14429816-14430156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
304, 281
               

               
Conread position:
               
308-635
               

               
Cow position:
               
chr22:12419018-12418690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
287, 274
               

               
Conread position:
               
324-641
               

               
Cow position:
               
chr22:11701126-11701443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
271, 258
               

               
Conread position:
               
324-641
               

               
Cow position:
               
chr22:12399147-12398830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
119, 124
               

               
Conread position:
               
325-641
               

               
Cow position:
               
chr22:11640716-11641032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
110, 122
               

               
Conread position:
               
328-640
               

               
Cow position:
               
chr22:11640802-11641115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
351-640
               

               
Cow position:
               
chr22:12498922-12499211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
139, 135
               

               
Conread position:
               
351-641
               

               
Cow position:
               
chr22:12476337-12476047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
139, 135
               

               
Conread position:
               
354-644
               

               
Cow position:
               
chr22:12399453-12399165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
84, 61
               

               
Conread position:
               
363-640
               

               
Cow position:
               
chr22:12458124-12457847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
57, 39
               

               
Conread position:
               
367-640
               

               
Cow position:
               
chr22:12458624-12458351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
81, 76
               

               
Conread position:
               
381-640
               

               
Cow position:
               
chr22:12432498-12432239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
207, 201
               

               
Conread position:
               
382-643
               

               
Cow position:
               
chr22:12458021-12457760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
58, 33
               

               
Conread position:
               
135-506
               

               
Cow position:
               
chr23:24639727-24640095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
126, 132
               

               
Conread position:
               
135-569
               

               
Cow position:
               
chr23:24639643-24640074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
143, 135
               

               
Conread position:
               
135-590
               

               
Cow position:
               
chr23:25660242-25660693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
305, 158
               

               
Conread position:
               
135-641
               

               
Cow position:
               
chr23:24639475-24639978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
39, 27
               

               
Conread position:
               
138-640
               

               
Cow position:
               
chr23:24560712-24560213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
182, 164
               

               
Conread position:
               
139-639
               

               
Cow position:
               
chr23:25660162-25660659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
300, 164
               

               
Conread position:
               
141-640
               

               
Cow position:
               
chr23:24560877-24560381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 127
               

               
Conread position:
               
142-639
               

               
Cow position:
               
chr23:24639398-24639892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
65, 83
               

               
Conread position:
               
150-602
               

               
Cow position:
               
chr23:24547140-24546691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
170, 153
               

               
Conread position:
               
151-630
               

               
Cow position:
               
chr23:24560615-24560139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
169, 142
               

               
Conread position:
               
256-641
               

               
Cow position:
               
chr23:24535830-24535451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
268-640
               

               
Cow position:
               
chr23:24522680-24522311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
170, 75
               

               
Conread position:
               
268-640
               

               
Cow position:
               
chr23:25626506-25626872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
333, 26
               

               
Conread position:
               
268-641
               

               
Cow position:
               
chr23:24547274-24546904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
52, 35
               

               
Conread position:
               
270-629
               

               
Cow position:
               
chr23:25724072-25723713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
80, 86
               

               
Conread position:
               
277-640
               

               
Cow position:
               
chr23:24626373-24626733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
43, 25
               

               
Conread position:
               
277-640
               

               
Cow position:
               
chr23:24639449-24639809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
43, 19
               

               
Conread position:
               
278-641
               

               
Cow position:
               
chr23:24560827-24560464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
73, 86
               

               
Conread position:
               
295-641
               

               
Cow position:
               
chr23:24522571-24522226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
25, 7
               

               
Conread position:
               
301-641
               

               
Cow position:
               
chr23:24547160-24546820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
19, 23
               

               
Conread position:
               
301-648
               

               
Cow position:
               
chr23:24639722-24640069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
19, 23
               

               
Conread position:
               
308-641
               

               
Cow position:
               
chr23:24535868-24535535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
12, 17
               

               
Conread position:
               
323-641
               

               
Cow position:
               
chr23:25660175-25660493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
181, 175
               

               
Conread position:
               
324-640
               

               
Cow position:
               
chr23:24547305-24546989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
9, 19
               

               
Conread position:
               
367-640
               

               
Cow position:
               
chr23:25660134-25660408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
8, 23
               

               
Conread position:
               
377-640
               

               
Cow position:
               
chr23:24626302-24626565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
218, 205
               

               
Conread position:
               
135-558
               

               
Cow position:
               
chr24:17077919-17077499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
74, 88
               

               
Conread position:
               
152-640
               

               
Cow position:
               
chr24:17036439-17035954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
174, 144
               

               
Conread position:
               
153-639
               

               
Cow position:
               
chr24:17078069-17077585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
66, 70
               

               
Conread position:
               
238-640
               

               
Cow position:
               
chr24:17070484-17070883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
266, 64
               

               
Conread position:
               
268-640
               

               
Cow position:
               
chr24:17035987-17035618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
52, 35
               

               
Conread position:
               
297-632
               

               
Cow position:
               
chr24:17035456-17035122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
301-634
               

               
Cow position:
               
chr24:17035705-17035372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
19, 24
               

               
Conread position:
               
301-640
               

               
Cow position:
               
chr24:17036461-17036122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
288, 274
               

               
Conread position:
               
324-630
               

               
Cow position:
               
chr24:17013188-17013494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
271, 258
               

               
Conread position:
               
324-641
               

               
Cow position:
               
chr24:17070651-17070968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
286, 292
               

               
Conread position:
               
330-640
               

               
Cow position:
               
chr24:17035508-17035198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
285, 252
               

               
Conread position:
               
363-640
               

               
Cow position:
               
chr24:17036147-17035870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
75, 85
               

               
Conread position:
               
367-640
               

               
Cow position:
               
chr24:17013147-17013420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
137, 131
               

               
Conread position:
               
375-622
               

               
Cow position:
               
chr24:17035715-17035468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
115, 111
               

               
Conread position:
               
133-590
               

               
Cow position:
               
chr25:25652865-25653317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
51, 7
               

               
Conread position:
               
134-629
               

               
Cow position:
               
chr25:22235834-22236326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
385, 169
               

               
Conread position:
               
135-546
               

               
Cow position:
               
chr25:34763336-34763741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
119, 113
               

               
Conread position:
               
135-568
               

               
Cow position:
               
chr25:36800889-36801319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
74, 83
               

               
Conread position:
               
135-589
               

               
Cow position:
               
chr25:3664021-3664472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
143, 128
               

               
Conread position:
               
135-589
               

               
Cow position:
               
chr25:36800805-36801256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
74, 80
               

               
Conread position:
               
135-634
               

               
Cow position:
               
chr25:25652446-25652942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 73
               

               
Conread position:
               
135-638
               

               
Cow position:
               
chr25:34763003-34763497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
52, 57
               

               
Conread position:
               
135-640
               

               
Cow position:
               
chr25:326587-327095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
79, 72
               

               
Conread position:
               
135-640
               

               
Cow position:
               
chr25:326671-327179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
176, 160
               

               
Conread position:
               
135-640
               

               
Cow position:
               
chr25:25652782-25653284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
49, 45
               

               
Conread position:
               
135-640
               

               
Cow position:
               
chr25:33157383-33156881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 128
               

               
Conread position:
               
135-640
               

               
Cow position:
               
chr25:33299073-33299575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
74, 80
               

               
Conread position:
               
135-640
               

               
Cow position:
               
chr25:34447280-34447775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
185, 170
               

               
Conread position:
               
135-640
               

               
Cow position:
               
chr25:34769866-34769364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
300, 161
               

               
Conread position:
               
135-641
               

               
Cow position:
               
chr25:25652194-25652697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
186, 161
               

               
Conread position:
               
135-641
               

               
Cow position:
               
chr25:25652698-25653201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
143, 128
               

               
Conread position:
               
135-641
               

               
Cow position:
               
chr25:33157299-33156796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 145
               

               
Conread position:
               
135-641
               

               
Cow position:
               
chr25:33298653-33299156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
38, 48
               

               
Conread position:
               
135-641
               

               
Cow position:
               
chr25:33298737-33299240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
72, 80
               

               
Conread position:
               
135-641
               

               
Cow position:
               
chr25:34473513-34474013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
113, 136
               

               
Conread position:
               
135-691
               

               
Cow position:
               
chr25:326755-327316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
479
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 0
               

               
Conread position:
               
137-590
               

               
Cow position:
               
chr25:33144857-33145303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
165, 0
               

               
Conread position:
               
138-628
               

               
Cow position:
               
chr25:34473600-34474084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
181, 118
               

               
Conread position:
               
138-641
               

               
Cow position:
               
chr25:3663940-3664440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
138-641
               

               
Cow position:
               
chr25:33298992-33299492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
117, 143
               

               
Conread position:
               
139-641
               

               
Cow position:
               
chr25:25652282-25652781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
180, 157
               

               
Conread position:
               
143-555
               

               
Cow position:
               
chr25:36801557-36801966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
66, 72
               

               
Conread position:
               
143-560
               

               
Cow position:
               
chr25:3636548-3636134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
347, 153
               

               
Conread position:
               
143-643
               

               
Cow position:
               
chr25:33144947-33145439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
211, 90
               

               
Conread position:
               
143-644
               

               
Cow position:
               
chr25:34762927-34763422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
132, 103
               

               
Conread position:
               
144-628
               

               
Cow position:
               
chr25:326344-326825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 74
               

               
Conread position:
               
144-640
               

               
Cow position:
               
chr25:34770025-34769532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
117, 124
               

               
Conread position:
               
150-641
               

               
Cow position:
               
chr25:33299256-33299744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
57, 66
               

               
Conread position:
               
153-592
               

               
Cow position:
               
chr25:33299427-33299858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
56, 62
               

               
Conread position:
               
233-634
               

               
Cow position:
               
chr25:34770104-34769706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
26, 46
               

               
Conread position:
               
233-640
               

               
Cow position:
               
chr25:23420403-23420807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
121, 63
               

               
Conread position:
               
234-640
               

               
Cow position:
               
chr25:34769683-34769280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
27, 34
               

               
Conread position:
               
270-641
               

               
Cow position:
               
chr25:34762886-34763251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
49, 23
               

               
Conread position:
               
271-641
               

               
Cow position:
               
chr25:36800689-36801056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
48, 32
               

               
Conread position:
               
273-641
               

               
Cow position:
               
chr25:33299043-33299408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
340, 23
               

               
Conread position:
               
274-633
               

               
Cow position:
               
chr25:33529072-33529431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
277-631
               

               
Cow position:
               
chr25:33127866-33128217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
277-641
               

               
Cow position:
               
chr25:34769976-34769615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
43, 26
               

               
Conread position:
               
279-633
               

               
Cow position:
               
chr25:3664249-3664600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
284-640
               

               
Cow position:
               
chr25:22235816-22236169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
36, 12
               

               
Conread position:
               
285-607
               

               
Cow position:
               
chr25:414624-414308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
69, 17
               

               
Conread position:
               
285-622
               

               
Cow position:
               
chr25:3676064-3676398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
66, 26
               

               
Conread position:
               
292-634
               

               
Cow position:
               
chr25:3663923-3664265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
203, 208
               

               
Conread position:
               
295-641
               

               
Cow position:
               
chr25:33298726-33299072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
24, 30
               

               
Conread position:
               
295-641
               

               
Cow position:
               
chr25:34770129-34769783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
20, 13
               

               
Conread position:
               
295-641
               

               
Cow position:
               
chr25:36801454-36801800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
293, 287
               

               
Conread position:
               
296-641
               

               
Cow position:
               
chr25:36800795-36801140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
24, 28
               

               
Conread position:
               
297-639
               

               
Cow position:
               
chr25:33298560-33298902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
296, 304
               

               
Conread position:
               
297-639
               

               
Cow position:
               
chr25:34447103-34447445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
23, 27
               

               
Conread position:
               
299-641
               

               
Cow position:
               
chr25:326328-326670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
138, 124
               

               
Conread position:
               
299-641
               

               
Cow position:
               
chr25:22235747-22236086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
100, 41
               

               
Conread position:
               
301-561
               

               
Cow position:
               
chr25:33127971-33128231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
119, 103
               

               
Conread position:
               
301-569
               

               
Cow position:
               
chr25:34733924-34733656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
301-584
               

               
Cow position:
               
chr25:326582-326865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
301-590
               

               
Cow position:
               
chr25:33127803-33128091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
19, 23
               

               
Conread position:
               
301-629
               

               
Cow position:
               
chr25:36800884-36801212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
19, 23
               

               
Conread position:
               
301-630
               

               
Cow position:
               
chr25:33299488-33299817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
231, 226
               

               
Conread position:
               
301-630
               

               
Cow position:
               
chr25:36801628-36801957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
204, 197
               

               
Conread position:
               
301-631
               

               
Cow position:
               
chr25:34447023-34447353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
294, 282
               

               
Conread position:
               
301-634
               

               
Cow position:
               
chr25:36844619-36844295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
18, 24
               

               
Conread position:
               
301-635
               

               
Cow position:
               
chr25:3664016-3664350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
18, 24
               

               
Conread position:
               
301-640
               

               
Cow position:
               
chr25:23420384-23420723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
19, 24
               

               
Conread position:
               
301-640
               

               
Cow position:
               
chr25:36801376-36801715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
19, 23
               

               
Conread position:
               
301-641
               

               
Cow position:
               
chr25:33157388-33157048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
139, 134
               

               
Conread position:
               
301-641
               

               
Cow position:
               
chr25:36801544-36801884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
204, 197
               

               
Conread position:
               
302-641
               

               
Cow position:
               
chr25:33298985-33299324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
42, 52
               

               
Conread position:
               
313-641
               

               
Cow position:
               
chr25:4657368-4657040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
36, 26
               

               
Conread position:
               
319-589
               

               
Cow position:
               
chr25:34733989-34733720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
38, 5
               

               
Conread position:
               
321-630
               

               
Cow position:
               
chr25:34762850-34763156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
268, 0
               

               
Conread position:
               
323-562
               

               
Cow position:
               
chr25:33506771-33507010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
323-589
               

               
Cow position:
               
chr25:414673-414409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
31, 26
               

               
Conread position:
               
323-634
               

               
Cow position:
               
chr25:3676015-3676326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
90, 79
               

               
Conread position:
               
323-640
               

               
Cow position:
               
chr25:34732501-34732184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
198, 175
               

               
Conread position:
               
323-641
               

               
Cow position:
               
chr25:4657442-4657124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
284, 259
               

               
Conread position:
               
323-645
               

               
Cow position:
               
chr25:3636287-3635965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
324-629
               

               
Cow position:
               
chr25:33530505-33530810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
324-634
               

               
Cow position:
               
chr25:33127742-33128052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
271, 258
               

               
Conread position:
               
324-640
               

               
Cow position:
               
chr25:33305378-33305067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
111, 60
               

               
Conread position:
               
324-640
               

               
Cow position:
               
chr25:34446962-34447278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
114, 123
               

               
Conread position:
               
324-641
               

               
Cow position:
               
chr25:33305295-33304981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
208, 173
               

               
Conread position:
               
324-641
               

               
Cow position:
               
chr25:34732584-34732267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
109, 124
               

               
Conread position:
               
327-640
               

               
Cow position:
               
chr25:33127661-33127974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
49, 37
               

               
Conread position:
               
328-634
               

               
Cow position:
               
chr25:23420327-23420633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
105, 120
               

               
Conread position:
               
334-634
               

               
Cow position:
               
chr25:33530431-33530731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
352-640
               

               
Cow position:
               
chr25:33157421-33157133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
83, 96
               

               
Conread position:
               
363-635
               

               
Cow position:
               
chr25:427308-427581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
141, 153
               

               
Conread position:
               
363-641
               

               
Cow position:
               
chr25:23267272-23266994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
128, 52
               

               
Conread position:
               
374-639
               

               
Cow position:
               
chr25:326485-326752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
8, 23
               

               
Conread position:
               
378-640
               

               
Cow position:
               
chr25:36844626-36844364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
384-641
               

               
Cow position:
               
chr25:25652188-25652445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
969-1328
               

               
Cow position:
               
chr25:327589-327973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
55, 91
               

               
Conread position:
               
1181-1328
               

               
Cow position:
               
chr25:35173130-35172976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
135-568
               

               
Cow position:
               
chr28:34696170-34696598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
183, 158
               

               
Conread position:
               
135-630
               

               
Cow position:
               
chr28:34696086-34696578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
126, 97
               

               
Conread position:
               
135-641
               

               
Cow position:
               
chr28:7757758-7758261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
125, 141
               

               
Conread position:
               
136-640
               

               
Cow position:
               
chr28:7757508-7758008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
124, 8
               

               
Conread position:
               
143-640
               

               
Cow position:
               
chr28:9253033-9253527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
45, 50
               

               
Conread position:
               
272-630
               

               
Cow position:
               
chr28:7757559-7757914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
48, 21
               

               
Conread position:
               
277-631
               

               
Cow position:
               
chr28:11333821-11333470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
78, 26
               

               
Conread position:
               
277-640
               

               
Cow position:
               
chr28:7758472-7758831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
43, 19
               

               
Conread position:
               
293-640
               

               
Cow position:
               
chr28:7757325-7757672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
27, 33
               

               
Conread position:
               
294-641
               

               
Cow position:
               
chr28:34695990-34696337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
46, 78
               

               
Conread position:
               
297-589
               

               
Cow position:
               
chr28:34673351-34673644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
5, 289
               

               
Conread position:
               
297-640
               

               
Cow position:
               
chr28:9253017-9253359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
23, 11
               

               
Conread position:
               
299-641
               

               
Cow position:
               
chr28:33210228-33210570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
334, 10
               

               
Conread position:
               
301-634
               

               
Cow position:
               
chr28:7757417-7757750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
19, 24
               

               
Conread position:
               
301-641
               

               
Cow position:
               
chr28:11333884-11333544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
19, 23
               

               
Conread position:
               
301-641
               

               
Cow position:
               
chr28:34696165-34696505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
324-630
               

               
Cow position:
               
chr28:7758028-7758334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
22, 29
               

               
Conread position:
               
325-641
               

               
Cow position:
               
chr28:9298675-9298990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
22, 29
               

               
Conread position:
               
149-550
               

               
Cow position:
               
chr3:20194826-20195224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
288, 153
               

               
Conread position:
               
150-641
               

               
Cow position:
               
chr3:20194743-20195231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
441, 162
               

               
Conread position:
               
290-590
               

               
Cow position:
               
chr3:62722250-62721952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
30, 13
               

               
Conread position:
               
296-590
               

               
Cow position:
               
chr3:68045598-68045890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
298-591
               

               
Cow position:
               
chr3:68027005-68027298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
5, 282
               

               
Conread position:
               
323-641
               

               
Cow position:
               
chr3:20194829-20195147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
281, 257
               

               
Conread position:
               
135-634
               

               
Cow position:
               
chr4:65494935-65494433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
38, 48
               

               
Conread position:
               
135-634
               

               
Cow position:
               
chr4:65495019-65494517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
121, 138
               

               
Conread position:
               
323-633
               

               
Cow position:
               
chr4:65703476-65703166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
108, 121
               

               
Conread position:
               
134-640
               

               
Cow position:
               
chr6:49340914-49341416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
214, 10
               

               
Conread position:
               
135-569
               

               
Cow position:
               
chr6:49428990-49429421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
158, 0
               

               
Conread position:
               
135-634
               

               
Cow position:
               
chr6:49340578-49341074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
290, 161
               

               
Conread position:
               
135-639
               

               
Cow position:
               
chr6:49428906-49429407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
146, 121
               

               
Conread position:
               
135-640
               

               
Cow position:
               
chr6:49340494-49340996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
170, 0
               

               
Conread position:
               
135-641
               

               
Cow position:
               
chr6:49428318-49428821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
104, 99
               

               
Conread position:
               
135-641
               

               
Cow position:
               
chr6:49428486-49428989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
355, 161
               

               
Conread position:
               
135-641
               

               
Cow position:
               
chr6:49428654-49429157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
471, 161
               

               
Conread position:
               
135-641
               

               
Cow position:
               
chr6:49428738-49429241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
462, 158
               

               
Conread position:
               
150-641
               

               
Cow position:
               
chr6:49428249-49428737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
233-641
               

               
Cow position:
               
chr6:49428248-49428653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
291, 60
               

               
Conread position:
               
268-640
               

               
Cow position:
               
chr6:49340963-49341332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
52, 35
               

               
Conread position:
               
268-641
               

               
Cow position:
               
chr6:49340459-49340829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
52, 25
               

               
Conread position:
               
299-641
               

               
Cow position:
               
chr6:49428227-49428569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
21, 25
               

               
Conread position:
               
323-569
               

               
Cow position:
               
chr6:49396232-49396478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
112, 122
               

               
Conread position:
               
324-634
               

               
Cow position:
               
chr6:49396317-49396627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
324-640
               

               
Cow position:
               
chr6:49396485-49396801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
111, 124
               

               
Conread position:
               
134-522
               

               
Cow position:
               
chr7:18390420-18390804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
80, 10
               

               
Conread position:
               
135-628
               

               
Cow position:
               
chr7:42878766-42878276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
23, 33
               

               
Conread position:
               
135-640
               

               
Cow position:
               
chr7:3180375-3180876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
120, 134
               

               
Conread position:
               
135-640
               

               
Cow position:
               
chr7:42878934-42878432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
184, 158
               

               
Conread position:
               
264-630
               

               
Cow position:
               
chr7:18390382-18390744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
57, 11
               

               
Conread position:
               
271-640
               

               
Cow position:
               
chr7:42878966-42878600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
274-590
               

               
Cow position:
               
chr7:1439952-1440264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
80, 23
               

               
Conread position:
               
277-640
               

               
Cow position:
               
chr7:18390226-18390586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
163, 25
               

               
Conread position:
               
290-641
               

               
Cow position:
               
chr7:18390152-18390503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
57, 64
               

               
Conread position:
               
297-634
               

               
Cow position:
               
chr7:3180031-3180367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
23, 6
               

               
Conread position:
               
297-641
               

               
Cow position:
               
chr7:18390328-18390671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
23, 6
               

               
Conread position:
               
299-641
               

               
Cow position:
               
chr7:42879193-42878851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
301-590
               

               
Cow position:
               
chr7:18390499-18390787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
53, 29
               

               
Conread position:
               
301-634
               

               
Cow position:
               
chr7:11600850-11600517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
134, 146
               

               
Conread position:
               
301-640
               

               
Cow position:
               
chr7:3179782-3180121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
139, 130
               

               
Conread position:
               
301-640
               

               
Cow position:
               
chr7:3180118-3180457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
36, 53
               

               
Conread position:
               
301-640
               

               
Cow position:
               
chr7:42879107-42878768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
18, 24
               

               
Conread position:
               
313-562
               

               
Cow position:
               
chr7:12293613-12293862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
313-641
               

               
Cow position:
               
chr7:3179710-3180038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
113, 102
               

               
Conread position:
               
324-640
               

               
Cow position:
               
chr7:42879000-42878684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
111, 121
               

               
Conread position:
               
352-640
               

               
Cow position:
               
chr7:11600883-11600595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
248, 262
               

               
Conread position:
               
375-634
               

               
Cow position:
               
chr7:3180528-3180787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
60, 72
               

               
Conread position:
               
393-639
               

               
Cow position:
               
chr7:3179706-3179952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
111, 105
               

               
Conread position:
               
134-634
               

               
Cow position:
               
chr8:55580996-55581492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
144, 6
               

               
Conread position:
               
135-643
               

               
Cow position:
               
chr8:55581164-55581669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
141, 120
               

               
Conread position:
               
233-634
               

               
Cow position:
               
chr8:55580926-55581324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
45, 30
               

               
Conread position:
               
247-634
               

               
Cow position:
               
chr8:48407340-48406960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
73, 11
               

               
Conread position:
               
261-640
               

               
Cow position:
               
chr8:48407584-48407206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
7, 44
               

               
Conread position:
               
267-639
               

               
Cow position:
               
chr8:46816183-46816552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
53, 36
               

               
Conread position:
               
295-640
               

               
Cow position:
               
chr8:45201433-45201778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
302, 284
               

               
Conread position:
               
297-634
               

               
Cow position:
               
chr8:45201015-45201352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
58, 35
               

               
Conread position:
               
297-645
               

               
Cow position:
               
chr8:46816631-46816976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
22, 6
               

               
Conread position:
               
301-590
               

               
Cow position:
               
chr8:48407041-48406752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
137, 145
               

               
Conread position:
               
301-640
               

               
Cow position:
               
chr8:46816886-46817225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
19, 24
               

               
Conread position:
               
301-640
               

               
Cow position:
               
chr8:55581243-55581582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
19, 23
               

               
Conread position:
               
301-641
               

               
Cow position:
               
chr8:45201103-45201443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
31, 17
               

               
Conread position:
               
319-640
               

               
Cow position:
               
chr8:55580926-55581246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
177, 5
               

               
Conread position:
               
324-634
               

               
Cow position:
               
chr8:48406682-48406372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
114, 124
               

               
Conread position:
               
324-640
               

               
Cow position:
               
chr8:45201546-45201862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
271, 260
               

               
Conread position:
               
328-634
               

               
Cow position:
               
chr8:55580849-55581156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
16, 26
               

               
Conread position:
               
363-640
               

               
Cow position:
               
chr8:45201417-45201694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
72, 83
               

               
Conread position:
               
367-640
               

               
Cow position:
               
chr8:46816196-46816469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
68, 81
               

               
Conread position:
               
134-640
               

               
Cow position:
               
chrX:25309896-25310398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
75, 10
               

               
Conread position:
               
159-590
               

               
Cow position:
               
chrX:25324800-25324374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
50, 31
               

               
Conread position:
               
266-640
               

               
Cow position:
               
chrX:25309691-25310062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
54, 34
               

               
Conread position:
               
285-619
               

               
Cow position:
               
chrX:13826792-13826464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
69, 21
               

               
Conread position:
               
295-640
               

               
Cow position:
               
chrX:25309801-25310146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
25, 30
               

               
Conread position:
               
297-634
               

               
Cow position:
               
chrX:29045178-29044842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
55, 11
               

               
Conread position:
               
297-644
               

               
Cow position:
               
chrX:25324749-25324405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
23, 11
               

               
Conread position:
               
301-630
               

               
Cow position:
               
chrX:13826947-13826618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
53, 48
               

               
Conread position:
               
301-630
               

               
Cow position:
               
chrX:29045742-29045413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
18, 24
               

               
Conread position:
               
302-641
               

               
Cow position:
               
chrX:13826862-13826523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
18, 22
               

               
Conread position:
               
324-641
               

               
Cow position:
               
chrX:14181282-14180966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
271, 258
               

               
Conread position:
               
352-634
               

               
Cow position:
               
chrX:25325535-25325253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
236, 230
               

               
Conread position:
               
419-641
               

               
Cow position:
               
chrX:25309673-25309895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0