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Cow genome map

           
Conread name:
           
Ss1.1-Mixn-0008o03.5
        

               
Conread position:
               
126-366
               

               
Cow position:
               
chr10:17142109-17142355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
70, 178
               

               
Conread position:
               
127-415
               

               
Cow position:
               
chr10:29768662-29768372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
67, 118
               

               
Conread position:
               
129-408
               

               
Cow position:
               
chr10:19057042-19056752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
137-409
               

               
Cow position:
               
chr10:39100814-39101087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
60, 179
               

               
Conread position:
               
137-587
               

               
Cow position:
               
chr10:29798117-29798551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
60, 114
               

               
Conread position:
               
158-460
               

               
Cow position:
               
chr10:41383918-41383610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
40, 30
               

               
Conread position:
               
180-584
               

               
Cow position:
               
chr10:18389086-18388667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
18, 56
               

               
Conread position:
               
200-431
               

               
Cow position:
               
chr10:15085089-15085323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
67, 76
               

               
Conread position:
               
218-491
               

               
Cow position:
               
chr10:40647959-40648223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
49, 16
               

               
Conread position:
               
75-413
               

               
Cow position:
               
chr11:22709546-22709885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
19, 13
               

               
Conread position:
               
77-449
               

               
Cow position:
               
chr11:80132474-80132096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
20, 41
               

               
Conread position:
               
80-346
               

               
Cow position:
               
chr11:50023706-50023430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
18, 27
               

               
Conread position:
               
120-347
               

               
Cow position:
               
chr11:1465235-1465464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
60, 76
               

               
Conread position:
               
126-383
               

               
Cow position:
               
chr11:17150849-17150596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
70, 87
               

               
Conread position:
               
127-320
               

               
Cow position:
               
chr11:81643490-81643681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
70, 89
               

               
Conread position:
               
128-431
               

               
Cow position:
               
chr11:20068998-20068687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
129-558
               

               
Cow position:
               
chr11:13893717-13893286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
65, 75
               

               
Conread position:
               
130-398
               

               
Cow position:
               
chr11:11858456-11858727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
67, 147
               

               
Conread position:
               
130-398
               

               
Cow position:
               
chr11:25165840-25165560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
68, 26
               

               
Conread position:
               
130-399
               

               
Cow position:
               
chr11:9230826-9231094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
190, 66
               

               
Conread position:
               
130-413
               

               
Cow position:
               
chr11:23418802-23419079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
67, 97
               

               
Conread position:
               
130-424
               

               
Cow position:
               
chr11:45714902-45715194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
15, 19
               

               
Conread position:
               
131-413
               

               
Cow position:
               
chr11:49801053-49801327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
66, 141
               

               
Conread position:
               
136-473
               

               
Cow position:
               
chr11:59003890-59003550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
61, 174
               

               
Conread position:
               
137-379
               

               
Cow position:
               
chr11:57004594-57004838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
60, 54
               

               
Conread position:
               
145-449
               

               
Cow position:
               
chr11:67171410-67171102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
53, 6
               

               
Conread position:
               
181-431
               

               
Cow position:
               
chr11:20803790-20803539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
16, 138
               

               
Conread position:
               
200-431
               

               
Cow position:
               
chr11:59415228-59415463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
127, 66
               

               
Conread position:
               
98-426
               

               
Cow position:
               
chr12:6524730-6525064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
31, 13
               

               
Conread position:
               
127-430
               

               
Cow position:
               
chr12:37114367-37114071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
70, 103
               

               
Conread position:
               
129-431
               

               
Cow position:
               
chr12:31869404-31869705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
36, 120
               

               
Conread position:
               
130-293
               

               
Cow position:
               
chr12:38880529-38880695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
40, 154
               

               
Conread position:
               
130-405
               

               
Cow position:
               
chr12:41965102-41964825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
67, 208
               

               
Conread position:
               
130-449
               

               
Cow position:
               
chr12:33737742-33737419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
67, 33
               

               
Conread position:
               
131-440
               

               
Cow position:
               
chr12:27573261-27572947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
67, 164
               

               
Conread position:
               
142-399
               

               
Cow position:
               
chr12:14248423-14248684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
55, 19
               

               
Conread position:
               
129-446
               

               
Cow position:
               
chr13:51092699-51093020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
97, 60
               

               
Conread position:
               
130-383
               

               
Cow position:
               
chr13:19129501-19129752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
55, 43
               

               
Conread position:
               
137-347
               

               
Cow position:
               
chr13:2950885-2950672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
181-424
               

               
Cow position:
               
chr13:19311326-19311574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
16, 59
               

               
Conread position:
               
80-446
               

               
Cow position:
               
chr14:23019351-23019702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
117, 8
               

               
Conread position:
               
119-446
               

               
Cow position:
               
chr14:31913936-31914261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
78, 52
               

               
Conread position:
               
126-341
               

               
Cow position:
               
chr14:11732838-11733054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
70, 57
               

               
Conread position:
               
130-353
               

               
Cow position:
               
chr14:18130458-18130686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
130-415
               

               
Cow position:
               
chr14:41960685-41960402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
137, 144
               

               
Conread position:
               
130-429
               

               
Cow position:
               
chr14:24146541-24146241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
68, 158
               

               
Conread position:
               
131-345
               

               
Cow position:
               
chr14:31225429-31225642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
66, 46
               

               
Conread position:
               
136-415
               

               
Cow position:
               
chr14:4346757-4347039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
62, 17
               

               
Conread position:
               
138-440
               

               
Cow position:
               
chr14:41719888-41720201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
59, 172
               

               
Conread position:
               
154-449
               

               
Cow position:
               
chr14:20707667-20707950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
113, 44
               

               
Conread position:
               
170-605
               

               
Cow position:
               
chr14:28385091-28384641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 149
               

               
Conread position:
               
180-411
               

               
Cow position:
               
chr14:12161397-12161630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
17, 103
               

               
Conread position:
               
121-431
               

               
Cow position:
               
chr15:50510799-50510480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
127-411
               

               
Cow position:
               
chr15:44665261-44665545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
63, 191
               

               
Conread position:
               
130-460
               

               
Cow position:
               
chr15:30725566-30725226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
130-470
               

               
Cow position:
               
chr15:16081172-16080830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
68, 121
               

               
Conread position:
               
130-575
               

               
Cow position:
               
chr15:20380270-20379833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
77, 218
               

               
Conread position:
               
134-438
               

               
Cow position:
               
chr15:42599067-42599376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
63, 84
               

               
Conread position:
               
176-449
               

               
Cow position:
               
chr15:17485346-17485068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
25, 117
               

               
Conread position:
               
195-440
               

               
Cow position:
               
chr15:18643189-18642948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
74, 80
               

               
Conread position:
               
237-461
               

               
Cow position:
               
chr15:37612192-37611962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
127-444
               

               
Cow position:
               
chr16:17902423-17902736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
139, 68
               

               
Conread position:
               
130-366
               

               
Cow position:
               
chr16:45648711-45648473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
66, 159
               

               
Conread position:
               
130-396
               

               
Cow position:
               
chr16:27106713-27106982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
61, 21
               

               
Conread position:
               
130-460
               

               
Cow position:
               
chr16:36955232-36955558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
68, 50
               

               
Conread position:
               
132-332
               

               
Cow position:
               
chr16:871097-870893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
134-460
               

               
Cow position:
               
chr16:13433629-13433298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
62, 124
               

               
Conread position:
               
136-293
               

               
Cow position:
               
chr16:42133323-42133483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
60, 98
               

               
Conread position:
               
137-449
               

               
Cow position:
               
chr16:44219918-44220231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
60, 83
               

               
Conread position:
               
154-481
               

               
Cow position:
               
chr16:6224000-6224335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
41, 136
               

               
Conread position:
               
184-446
               

               
Cow position:
               
chr16:29056233-29056503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
127-347
               

               
Cow position:
               
chr17:40080249-40080470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
69, 149
               

               
Conread position:
               
130-319
               

               
Cow position:
               
chr17:26447853-26448040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
67, 19
               

               
Conread position:
               
130-381
               

               
Cow position:
               
chr17:1888868-1888614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
135-449
               

               
Cow position:
               
chr17:12132128-12131806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
62, 114
               

               
Conread position:
               
137-425
               

               
Cow position:
               
chr17:20696074-20696362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
60, 108
               

               
Conread position:
               
179-535
               

               
Cow position:
               
chr17:25769675-25770044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
16, 274
               

               
Conread position:
               
221-630
               

               
Cow position:
               
chr17:10346889-10346462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
48, 75
               

               
Conread position:
               
127-287
               

               
Cow position:
               
chr18:24711913-24711750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
127-304
               

               
Cow position:
               
chr18:31983777-31983956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
70, 162
               

               
Conread position:
               
130-409
               

               
Cow position:
               
chr18:52621352-52621634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
67, 120
               

               
Conread position:
               
131-412
               

               
Cow position:
               
chr18:30783362-30783079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
66, 25
               

               
Conread position:
               
142-399
               

               
Cow position:
               
chr18:17771278-17771021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
7, 69
               

               
Conread position:
               
163-381
               

               
Cow position:
               
chr18:23079048-23078836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
35, 130
               

               
Conread position:
               
238-425
               

               
Cow position:
               
chr18:16714138-16714329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
29, 47
               

               
Conread position:
               
127-347
               

               
Cow position:
               
chr19:46697958-46698178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
73, 43
               

               
Conread position:
               
128-290
               

               
Cow position:
               
chr19:13933335-13933171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
130-332
               

               
Cow position:
               
chr19:8235885-8235686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
117, 127
               

               
Conread position:
               
130-345
               

               
Cow position:
               
chr19:32699556-32699772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
76, 68
               

               
Conread position:
               
130-410
               

               
Cow position:
               
chr19:2491101-2490814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
68, 45
               

               
Conread position:
               
131-290
               

               
Cow position:
               
chr19:7590336-7590498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
132-446
               

               
Cow position:
               
chr19:12228320-12228639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
141-435
               

               
Cow position:
               
chr19:38893673-38893387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
56, 7
               

               
Conread position:
               
145-413
               

               
Cow position:
               
chr19:16108838-16109104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
52, 6
               

               
Conread position:
               
126-312
               

               
Cow position:
               
chr20:26787005-26786816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
56, 99
               

               
Conread position:
               
127-424
               

               
Cow position:
               
chr20:33348983-33348692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
70, 43
               

               
Conread position:
               
128-445
               

               
Cow position:
               
chr20:14711309-14710990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
70, 123
               

               
Conread position:
               
130-352
               

               
Cow position:
               
chr20:35010820-35010599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
67, 168
               

               
Conread position:
               
130-460
               

               
Cow position:
               
chr20:17685335-17685672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
68, 27
               

               
Conread position:
               
130-512
               

               
Cow position:
               
chr20:7108996-7108619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
63, 70
               

               
Conread position:
               
135-412
               

               
Cow position:
               
chr20:34938968-34938684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
136-431
               

               
Cow position:
               
chr20:20136606-20136304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
5, 148
               

               
Conread position:
               
143-403
               

               
Cow position:
               
chr20:31349757-31349494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
12, 105
               

               
Conread position:
               
176-440
               

               
Cow position:
               
chr20:3181624-3181351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
18, 25
               

               
Conread position:
               
127-422
               

               
Cow position:
               
chr21:14983581-14983270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
17, 23
               

               
Conread position:
               
127-433
               

               
Cow position:
               
chr21:876273-876591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
130-429
               

               
Cow position:
               
chr21:4265178-4264890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
68, 54
               

               
Conread position:
               
130-449
               

               
Cow position:
               
chr21:6956314-6955993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
67, 112
               

               
Conread position:
               
140-455
               

               
Cow position:
               
chr21:3109979-3110291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
60, 70
               

               
Conread position:
               
147-401
               

               
Cow position:
               
chr21:37928262-37928514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
50, 148
               

               
Conread position:
               
180-431
               

               
Cow position:
               
chr21:34025112-34024863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
104, 14
               

               
Conread position:
               
183-431
               

               
Cow position:
               
chr21:43046418-43046156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
186-424
               

               
Cow position:
               
chr21:40524550-40524307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
11, 102
               

               
Conread position:
               
218-440
               

               
Cow position:
               
chr21:42392798-42393023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
48, 56
               

               
Conread position:
               
127-406
               

               
Cow position:
               
chr22:45542856-45542578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
69, 117
               

               
Conread position:
               
130-440
               

               
Cow position:
               
chr22:12070234-12069918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
42, 146
               

               
Conread position:
               
130-452
               

               
Cow position:
               
chr22:27148735-27149054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
67, 118
               

               
Conread position:
               
131-319
               

               
Cow position:
               
chr22:33587747-33587934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
66, 17
               

               
Conread position:
               
135-587
               

               
Cow position:
               
chr22:37730698-37731167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
63, 164
               

               
Conread position:
               
149-431
               

               
Cow position:
               
chr22:26276207-26275926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
48, 126
               

               
Conread position:
               
175-533
               

               
Cow position:
               
chr22:13986868-13986488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
20, 109
               

               
Conread position:
               
129-421
               

               
Cow position:
               
chr23:2520262-2519974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
67, 79
               

               
Conread position:
               
130-383
               

               
Cow position:
               
chr23:27786768-27786514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
67, 202
               

               
Conread position:
               
130-466
               

               
Cow position:
               
chr23:32431168-32431509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
67, 47
               

               
Conread position:
               
135-289
               

               
Cow position:
               
chr23:20162518-20162362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
62, 77
               

               
Conread position:
               
135-430
               

               
Cow position:
               
chr23:30752041-30751750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
61, 110
               

               
Conread position:
               
136-353
               

               
Cow position:
               
chr23:33027656-33027875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
61, 154
               

               
Conread position:
               
152-446
               

               
Cow position:
               
chr23:39771009-39770721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
48, 117
               

               
Conread position:
               
169-580
               

               
Cow position:
               
chr23:13638062-13637657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
30, 59
               

               
Conread position:
               
127-384
               

               
Cow position:
               
chr24:20336759-20336498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
70, 194
               

               
Conread position:
               
130-452
               

               
Cow position:
               
chr24:8885855-8886179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
67, 178
               

               
Conread position:
               
130-471
               

               
Cow position:
               
chr24:15298628-15298977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 159
               

               
Conread position:
               
135-431
               

               
Cow position:
               
chr24:27756555-27756255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
138-488
               

               
Cow position:
               
chr24:6262301-6261953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
60, 251
               

               
Conread position:
               
130-383
               

               
Cow position:
               
chr25:14155402-14155660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
130-450
               

               
Cow position:
               
chr25:12541239-12541547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
67, 108
               

               
Conread position:
               
131-382
               

               
Cow position:
               
chr25:28667312-28667061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
134, 186
               

               
Conread position:
               
169-473
               

               
Cow position:
               
chr25:21961180-21960880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
27, 230
               

               
Conread position:
               
201-450
               

               
Cow position:
               
chr25:33670239-33669993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
22, 73
               

               
Conread position:
               
130-399
               

               
Cow position:
               
chr26:26665947-26665670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
67, 195
               

               
Conread position:
               
130-460
               

               
Cow position:
               
chr26:23306897-23307233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
67, 162
               

               
Conread position:
               
135-415
               

               
Cow position:
               
chr26:7172157-7171874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
62, 35
               

               
Conread position:
               
179-441
               

               
Cow position:
               
chr26:23253452-23253195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
18, 98
               

               
Conread position:
               
127-347
               

               
Cow position:
               
chr27:11659386-11659169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
70, 42
               

               
Conread position:
               
130-431
               

               
Cow position:
               
chr27:19627119-19627413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
66, 84
               

               
Conread position:
               
148-405
               

               
Cow position:
               
chr27:12552947-12552689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
119, 77
               

               
Conread position:
               
130-350
               

               
Cow position:
               
chr28:19360442-19360213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
130-415
               

               
Cow position:
               
chr28:20036547-20036842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
70, 186
               

               
Conread position:
               
133-382
               

               
Cow position:
               
chr28:31404011-31403762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
132, 54
               

               
Conread position:
               
135-450
               

               
Cow position:
               
chr28:15228621-15228319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
29, 70
               

               
Conread position:
               
137-470
               

               
Cow position:
               
chr28:11255809-11255473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
65, 60
               

               
Conread position:
               
164-588
               

               
Cow position:
               
chr28:30077712-30078140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
27, 128
               

               
Conread position:
               
176-446
               

               
Cow position:
               
chr28:2347862-2347590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
21, 230
               

               
Conread position:
               
226-444
               

               
Cow position:
               
chr28:31067999-31067778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
41, 32
               

               
Conread position:
               
130-360
               

               
Cow position:
               
chr29:24745009-24745242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
44, 52
               

               
Conread position:
               
130-399
               

               
Cow position:
               
chr29:36541567-36541840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
67, 80
               

               
Conread position:
               
130-412
               

               
Cow position:
               
chr29:23908487-23908768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
72, 15
               

               
Conread position:
               
130-456
               

               
Cow position:
               
chr29:37311055-37311384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
67, 128
               

               
Conread position:
               
131-415
               

               
Cow position:
               
chr29:14397586-14397297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
69, 33
               

               
Conread position:
               
136-383
               

               
Cow position:
               
chr29:27786793-27786547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
61, 50
               

               
Conread position:
               
138-319
               

               
Cow position:
               
chr29:30747161-30747344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
58, 181
               

               
Conread position:
               
139-446
               

               
Cow position:
               
chr29:19552168-19552485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
58, 83
               

               
Conread position:
               
127-293
               

               
Cow position:
               
chr7:24278404-24278235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
127-415
               

               
Cow position:
               
chr7:16004208-16003912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
69, 169
               

               
Conread position:
               
129-431
               

               
Cow position:
               
chr7:18971396-18971713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
59, 47
               

               
Conread position:
               
130-348
               

               
Cow position:
               
chr7:26389262-26389043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
66, 147
               

               
Conread position:
               
137-446
               

               
Cow position:
               
chr7:20541280-20540969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
60, 183
               

               
Conread position:
               
153-440
               

               
Cow position:
               
chr7:58899389-58899096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
44, 168
               

               
Conread position:
               
164-459
               

               
Cow position:
               
chr7:59581426-59581123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
196-460
               

               
Cow position:
               
chr7:50879737-50879468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
110, 71
               

               
Conread position:
               
520-707
               

               
Cow position:
               
chr7:18971945-18972120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
127-347
               

               
Cow position:
               
chr8:55725458-55725242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
70, 33
               

               
Conread position:
               
130-431
               

               
Cow position:
               
chr8:20365301-20365000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
89, 68
               

               
Conread position:
               
130-477
               

               
Cow position:
               
chr8:59061475-59061819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
67, 48
               

               
Conread position:
               
130-552
               

               
Cow position:
               
chr8:12441026-12441455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
67, 41
               

               
Conread position:
               
130-584
               

               
Cow position:
               
chr8:7115659-7115210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
138, 96
               

               
Conread position:
               
132-347
               

               
Cow position:
               
chr8:39143797-39144014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
188, 0
               

               
Conread position:
               
132-427
               

               
Cow position:
               
chr8:22228470-22228175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
137, 67
               

               
Conread position:
               
137-431
               

               
Cow position:
               
chr8:57891629-57891332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
59, 90
               

               
Conread position:
               
138-423
               

               
Cow position:
               
chr8:6571085-6571378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
158-452
               

               
Cow position:
               
chr8:18225833-18226124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
40, 87
               

               
Conread position:
               
164-312
               

               
Cow position:
               
chr8:38007554-38007403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
33, 46
               

               
Conread position:
               
168-415
               

               
Cow position:
               
chr8:33061774-33062026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
29, 159
               

               
Conread position:
               
169-415
               

               
Cow position:
               
chr8:28300903-28301147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
28, 123
               

               
Conread position:
               
180-423
               

               
Cow position:
               
chr8:28296641-28296402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
20, 61
               

               
Conread position:
               
126-433
               

               
Cow position:
               
chr9:3906543-3906858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
67, 74
               

               
Conread position:
               
127-311
               

               
Cow position:
               
chr9:64048281-64048095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
19, 26
               

               
Conread position:
               
127-410
               

               
Cow position:
               
chr9:39370854-39370574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
70, 46
               

               
Conread position:
               
130-322
               

               
Cow position:
               
chr9:41054782-41054977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
67, 47
               

               
Conread position:
               
130-381
               

               
Cow position:
               
chr9:35249206-35249461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
67, 47
               

               
Conread position:
               
148-440
               

               
Cow position:
               
chr9:38948493-38948200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
49, 121
               

               
Conread position:
               
188-587
               

               
Cow position:
               
chr9:38420668-38420253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
79, 99
               

               
Conread position:
               
233-452
               

               
Cow position:
               
chr9:58199122-58199342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
34, 48
               

               
Conread position:
               
125-319
               

               
Cow position:
               
chrX:17609673-17609481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
72, 9
               

               
Conread position:
               
127-347
               

               
Cow position:
               
chrX:27240555-27240777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
72, 188
               

               
Conread position:
               
127-399
               

               
Cow position:
               
chrX:27210623-27210891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
70, 95
               

               
Conread position:
               
127-413
               

               
Cow position:
               
chrX:7809185-7808898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
70, 139
               

               
Conread position:
               
127-431
               

               
Cow position:
               
chrX:12641104-12641411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
52, 64
               

               
Conread position:
               
130-286
               

               
Cow position:
               
chrX:21217774-21217615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
130-302
               

               
Cow position:
               
chrX:6514467-6514291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
130-382
               

               
Cow position:
               
chrX:9346961-9347209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
70, 21
               

               
Conread position:
               
130-431
               

               
Cow position:
               
chrX:9403937-9404244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
68, 92
               

               
Conread position:
               
130-433
               

               
Cow position:
               
chrX:26845337-26845647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
66, 181
               

               
Conread position:
               
130-436
               

               
Cow position:
               
chrX:12852690-12852377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
131-407
               

               
Cow position:
               
chrX:20544082-20543800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
66, 29
               

               
Conread position:
               
131-449
               

               
Cow position:
               
chrX:3121039-3120721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
66, 14
               

               
Conread position:
               
132-587
               

               
Cow position:
               
chrX:15341216-15340759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
17, 13
               

               
Conread position:
               
135-440
               

               
Cow position:
               
chrX:20974856-20975154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
64, 102
               

               
Conread position:
               
137-446
               

               
Cow position:
               
chrX:37128675-37128986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
64, 215
               

               
Conread position:
               
138-395
               

               
Cow position:
               
chrX:37038174-37038428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
59, 140
               

               
Conread position:
               
145-442
               

               
Cow position:
               
chrX:30529923-30529618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
52, 6
               

               
Conread position:
               
148-442
               

               
Cow position:
               
chrX:28080846-28081146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
49, 140
               

               
Conread position:
               
148-455
               

               
Cow position:
               
chrX:34489444-34489753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
119, 50
               

               
Conread position:
               
153-445
               

               
Cow position:
               
chrX:35821538-35821252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
116, 33
               

               
Conread position:
               
177-440
               

               
Cow position:
               
chrX:33884879-33885149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
21, 74