Cow genome map
| Conread name: | Ss1.1-Mixn-0022f16.5 |
| Conread position: | 177-434 |
| Cow position: | chr1:72904364-72904621 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 54, 7 |
| Conread position: | 177-441 |
| Cow position: | chr1:72904134-72904404 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 7, 72 |
| Conread position: | 177-441 |
| Cow position: | chr1:95682117-95682383 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 7, 91 |
| Conread position: | 177-441 |
| Cow position: | chr1:95682151-95682417 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 21, 7 |
| Conread position: | 177-441 |
| Cow position: | chr1:95682265-95682525 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 70, 7 |
| Conread position: | 183-452 |
| Cow position: | chr1:72904306-72904570 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 186 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 260, 54 |
| Conread position: | 199-449 |
| Cow position: | chr1:72904050-72904312 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 37, 220 |
| Conread position: | 211-448 |
| Cow position: | chr1:95682107-95682341 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 28, 37 |
| Conread position: | 3-930 |
| Cow position: | chr11:78307573-78308531 (view UCSC Genome Browser custom track) |
| Alignm length: | 974 |
| Alignm identity: | 699 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 229 |
| Conread position: | 175-447 |
| Cow position: | chr13:31114881-31115154 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 9, 125 |
| Conread position: | 177-401 |
| Cow position: | chr13:31114835-31115058 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 7, 21 |
| Conread position: | 177-428 |
| Cow position: | chr13:61775678-61775434 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 21, 7 |
| Conread position: | 177-440 |
| Cow position: | chr13:61774218-61773953 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 188 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 7, 26 |
| Conread position: | 177-441 |
| Cow position: | chr13:61774324-61774068 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 7, 23 |
| Conread position: | 177-441 |
| Cow position: | chr13:61776232-61775972 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 7, 21 |
| Conread position: | 177-448 |
| Cow position: | chr13:61774256-61773984 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 21, 7 |
| Conread position: | 177-453 |
| Cow position: | chr13:61773804-61773522 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 7, 219 |
| Conread position: | 177-453 |
| Cow position: | chr13:61774074-61773796 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 7, 107 |
| Conread position: | 177-453 |
| Cow position: | chr13:61774302-61774032 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 21, 7 |
| Conread position: | 177-453 |
| Cow position: | chr13:61774468-61774194 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 177, 7 |
| Conread position: | 177-453 |
| Cow position: | chr13:61774506-61774230 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 7, 42 |
| Conread position: | 177-453 |
| Cow position: | chr13:61775832-61775556 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 7, 21 |
| Conread position: | 177-453 |
| Cow position: | chr13:61775942-61775658 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 7, 21 |
| Conread position: | 177-453 |
| Cow position: | chr13:61776104-61775814 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 7, 26 |
| Conread position: | 177-453 |
| Cow position: | chr13:61776206-61775938 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 21, 7 |
| Conread position: | 177-453 |
| Cow position: | chr13:61776356-61776086 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 7, 63 |
| Conread position: | 183-433 |
| Cow position: | chr13:31114588-31114840 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 46, 14 |
| Conread position: | 183-441 |
| Cow position: | chr13:61775775-61775510 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 56, 19 |
| Conread position: | 183-448 |
| Cow position: | chr13:31114612-31114879 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 9, 51 |
| Conread position: | 183-453 |
| Cow position: | chr13:61773741-61773472 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 56, 19 |
| Conread position: | 183-453 |
| Cow position: | chr13:61774159-61773890 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 127, 14 |
| Conread position: | 198-441 |
| Cow position: | chr13:61774577-61774334 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 48, 40 |
| Conread position: | 198-453 |
| Cow position: | chr13:61776457-61776206 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 48, 40 |
| Conread position: | 201-453 |
| Cow position: | chr13:61773892-61773640 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 187, 146 |
| Conread position: | 201-453 |
| Cow position: | chr13:61774432-61774178 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 142, 221 |
| Conread position: | 202-440 |
| Cow position: | chr13:31114742-31114976 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 152, 41 |
| Conread position: | 202-441 |
| Cow position: | chr13:61773913-61773672 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 92, 36 |
| Conread position: | 202-441 |
| Cow position: | chr13:61774557-61774322 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 141, 41 |
| Conread position: | 202-441 |
| Cow position: | chr13:61776031-61775788 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 44, 36 |
| Conread position: | 183-453 |
| Cow position: | chr15:51916555-51916818 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 25, 14 |
| Conread position: | 202-457 |
| Cow position: | chr15:51916489-51916758 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 176-448 |
| Cow position: | chr18:12442628-12442357 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 8, 64 |
| Conread position: | 176-453 |
| Cow position: | chr18:12442394-12442113 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 26, 8 |
| Conread position: | 177-434 |
| Cow position: | chr18:12442143-12441884 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 7, 16 |
| Conread position: | 177-448 |
| Cow position: | chr18:12442655-12442389 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 7, 26 |
| Conread position: | 177-448 |
| Cow position: | chr18:12442719-12442435 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 7, 72 |
| Conread position: | 177-448 |
| Cow position: | chr18:12442845-12442567 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 7, 21 |
| Conread position: | 177-448 |
| Cow position: | chr18:12442871-12442603 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 69, 7 |
| Conread position: | 177-453 |
| Cow position: | chr18:12443055-12442783 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 7, 174 |
| Conread position: | 177-458 |
| Cow position: | chr18:12442339-12442060 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 7, 26 |
| Conread position: | 177-458 |
| Cow position: | chr18:12442545-12442266 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 21, 7 |
| Conread position: | 178-447 |
| Cow position: | chr18:12442432-12442174 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 20, 6 |
| Conread position: | 180-428 |
| Cow position: | chr18:12442127-12441872 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 127, 17 |
| Conread position: | 183-448 |
| Cow position: | chr18:12442204-12441950 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 15, 56 |
| Conread position: | 189-448 |
| Cow position: | chr18:12443169-12442903 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 57, 49 |
| Conread position: | 202-447 |
| Cow position: | chr18:12442478-12442240 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 131, 36 |
| Conread position: | 245-457 |
| Cow position: | chr18:49303075-49302866 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 165, 101 |
| Conread position: | 184-446 |
| Cow position: | chr19:8541009-8541267 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 8, 34 |
| Conread position: | 202-453 |
| Cow position: | chr19:8540982-8541224 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 81, 15 |
| Conread position: | 177-467 |
| Cow position: | chr2:71880343-71880061 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 7, 21 |
| Conread position: | 177-441 |
| Cow position: | chr20:42708002-42707746 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 21, 7 |
| Conread position: | 177-441 |
| Cow position: | chr20:42708035-42707770 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 7, 149 |
| Conread position: | 177-443 |
| Cow position: | chr20:42896163-42896431 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 7, 21 |
| Conread position: | 199-459 |
| Cow position: | chr20:42896155-42896425 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 33, 140 |
| Conread position: | 202-458 |
| Cow position: | chr20:42707861-42707603 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 37, 119 |
| Conread position: | 204-453 |
| Cow position: | chr20:42707887-42707638 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 39, 97 |
| Conread position: | 201-459 |
| Cow position: | chr23:5391573-5391301 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 42, 224 |
| Conread position: | 177-449 |
| Cow position: | chr26:26155417-26155147 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 177, 8 |
| Conread position: | 183-448 |
| Cow position: | chr26:26155473-26155209 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 160, 18 |
| Conread position: | 183-643 |
| Cow position: | chr26:26155362-26154903 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 163, 14 |
| Conread position: | 194-442 |
| Cow position: | chr29:45188259-45188503 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 155, 23 |
| Conread position: | 202-453 |
| Cow position: | chr29:45188128-45188384 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 104, 61 |
| Conread position: | 245-428 |
| Cow position: | chr29:45695419-45695601 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 184-452 |
| Cow position: | chr3:78731282-78731010 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 11, 55 |
| Conread position: | 177-453 |
| Cow position: | chr4:63907958-63908232 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 194 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 7, 21 |
| Conread position: | 177-453 |
| Cow position: | chr4:63907996-63908276 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 189 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 7, 21 |
| Conread position: | 202-448 |
| Cow position: | chr4:63907898-63908138 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 177-434 |
| Cow position: | chr8:62102329-62102069 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 20, 63 |
| Conread position: | 177-448 |
| Cow position: | chrX:47321483-47321760 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 7, 265 |
| Conread position: | 191-433 |
| Cow position: | chrX:47321328-47321577 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 18, 0 |