Cow genome map
| Conread name: | Ss1.1-Mixn-0033l14.5 |
| Conread position: | 50-433 |
| Cow position: | chr1:69374746-69374381 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 126-434 |
| Cow position: | chr1:30516494-30516802 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 153-435 |
| Cow position: | chr1:6621096-6621378 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 154 |
| Conread position: | 50-433 |
| Cow position: | chr10:69640066-69639686 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 255, 0 |
| Conread position: | 50-434 |
| Cow position: | chr10:15825825-15825441 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 50-434 |
| Cow position: | chr10:45269927-45270308 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 0 |
| Conread position: | 19-434 |
| Cow position: | chr11:43057891-43058306 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 50-434 |
| Cow position: | chr11:7724239-7724623 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 66-434 |
| Cow position: | chr11:68582203-68581835 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 153-435 |
| Cow position: | chr11:82946841-82947123 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 154 |
| Conread position: | 321-434 |
| Cow position: | chr11:16255176-16255289 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 19-434 |
| Cow position: | chr12:30861757-30861342 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 54-434 |
| Cow position: | chr12:1662196-1662576 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 54-434 |
| Cow position: | chr12:1673621-1674001 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 87-434 |
| Cow position: | chr12:1636184-1635808 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 259 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 19, 73 |
| Conread position: | 50-341 |
| Cow position: | chr13:27850670-27850378 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 50-434 |
| Cow position: | chr13:7598932-7599310 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 50-434 |
| Cow position: | chr13:52263853-52263469 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 332-434 |
| Cow position: | chr13:42559945-42560047 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 92 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 50-434 |
| Cow position: | chr15:35507086-35506716 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 0 |
| Conread position: | 54-434 |
| Cow position: | chr15:11070395-11070015 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 69-434 |
| Cow position: | chr15:14106155-14106520 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 201-435 |
| Cow position: | chr15:46718116-46717882 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 50-434 |
| Cow position: | chr16:49012029-49011645 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 50-434 |
| Cow position: | chr16:49773476-49773860 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 50-434 |
| Cow position: | chr16:52573334-52573717 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 50-434 |
| Cow position: | chr17:36084426-36084042 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 50-433 |
| Cow position: | chr18:46143374-46143754 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 50-434 |
| Cow position: | chr19:6987701-6987321 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 0 |
| Conread position: | 50-434 |
| Cow position: | chr19:29154121-29154505 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 50-434 |
| Cow position: | chr19:41835185-41834804 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 0 |
| Conread position: | 50-434 |
| Cow position: | chr2:58003336-58002955 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 0 |
| Conread position: | 225-434 |
| Cow position: | chr2:9225249-9225458 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 50-434 |
| Cow position: | chr20:28491517-28491900 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 164-389 |
| Cow position: | chr20:5115425-5115650 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 232-434 |
| Cow position: | chr20:37397972-37397770 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 55-434 |
| Cow position: | chr22:41852829-41852450 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 261-434 |
| Cow position: | chr22:41962300-41962477 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 150 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 52-521 |
| Cow position: | chr23:24223255-24223717 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 390, 0 |
| Conread position: | 53-433 |
| Cow position: | chr23:24185731-24186111 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 53-435 |
| Cow position: | chr23:25804040-25804422 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 54-535 |
| Cow position: | chr23:24170542-24171016 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 388, 0 |
| Conread position: | 67-498 |
| Cow position: | chr23:26337810-26338233 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 21 |
| Conread position: | 85-531 |
| Cow position: | chr23:26341284-26340850 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 355, 0 |
| Conread position: | 243-434 |
| Cow position: | chr23:35659464-35659655 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 267-434 |
| Cow position: | chr23:5740794-5740627 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 147 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 93-434 |
| Cow position: | chr24:40172650-40172991 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 340-434 |
| Cow position: | chr26:29165765-29165859 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 82 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 77-434 |
| Cow position: | chr27:26613730-26614087 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 207-434 |
| Cow position: | chr27:27865541-27865768 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 294-434 |
| Cow position: | chr28:27049907-27050047 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 50-434 |
| Cow position: | chr29:1838842-1839226 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-570 |
| Cow position: | chr3:17645367-17645940 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 16 |
| Conread position: | 47-435 |
| Cow position: | chr3:17614435-17614823 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 47-435 |
| Cow position: | chr3:17624761-17624373 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 49-435 |
| Cow position: | chr3:62448573-62448959 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 50-433 |
| Cow position: | chr3:1077451-1077833 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 0 |
| Conread position: | 53-435 |
| Cow position: | chr3:17591904-17592286 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 54-434 |
| Cow position: | chr3:62478430-62478050 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 54-521 |
| Cow position: | chr3:62459268-62458795 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 383, 447 |
| Conread position: | 54-531 |
| Cow position: | chr3:62431042-62430581 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 390, 0 |
| Conread position: | 302-434 |
| Cow position: | chr3:56588624-56588754 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 50-434 |
| Cow position: | chr4:15926001-15925617 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 195-435 |
| Cow position: | chr4:64390607-64390847 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 279-434 |
| Cow position: | chr4:35724460-35724305 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 134 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 50-434 |
| Cow position: | chr5:13917379-13916995 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 60-434 |
| Cow position: | chr5:31548158-31548532 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 327-434 |
| Cow position: | chr5:8026503-8026396 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 50-434 |
| Cow position: | chr6:56962166-56962551 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 246, 0 |
| Conread position: | 54-434 |
| Cow position: | chr6:7483636-7484015 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 54-434 |
| Cow position: | chr6:39755834-39755454 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 54-525 |
| Cow position: | chr6:39764559-39764096 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 452, 387 |
| Conread position: | 84-434 |
| Cow position: | chr6:20715442-20715792 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 207-356 |
| Cow position: | chr6:37164862-37165011 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 135 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 50-434 |
| Cow position: | chr7:13894780-13894396 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 54-436 |
| Cow position: | chr7:2957920-2958302 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 195-434 |
| Cow position: | chr8:11335272-11335033 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 261-434 |
| Cow position: | chr8:36912090-36911917 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 148 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 88-434 |
| Cow position: | chr9:36521604-36521256 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 191-434 |
| Cow position: | chr9:35746073-35746316 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 50-434 |
| Cow position: | chrX:6377837-6378221 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 135-443 |
| Cow position: | chrX:15369321-15369626 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 298, 28 |
| Conread position: | 162-434 |
| Cow position: | chrX:22916338-22916066 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |