Cow genome map
| Conread name: | Ss1.1-Mus1-POSM0100001_H12.3.232 |
| Conread position: | 64-367 |
| Cow position: | chr1:28625843-28626146 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 849-1054 |
| Cow position: | chr1:28638583-28638788 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 45, 29 |
| Conread position: | 1190-1353 |
| Cow position: | chr1:28645495-28645658 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 61-250 |
| Cow position: | chr10:13737804-13737993 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 150 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 67-250 |
| Cow position: | chr10:13722780-13722597 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 249-415 |
| Cow position: | chr10:13722422-13722256 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 249-415 |
| Cow position: | chr10:13738168-13738334 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 540-823 |
| Cow position: | chr10:13740141-13740424 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 540-855 |
| Cow position: | chr10:13721447-13721131 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 313, 0 |
| Conread position: | 849-1054 |
| Cow position: | chr10:13740760-13740965 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 159 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 849-1063 |
| Cow position: | chr10:13720912-13720698 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 166 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1047-1181 |
| Cow position: | chr10:13720593-13720459 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1181-1456 |
| Cow position: | chr10:13720368-13720093 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1181-1456 |
| Cow position: | chr10:13742312-13742587 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1553-1674 |
| Cow position: | chr10:13744438-13744559 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1553-1689 |
| Cow position: | chr10:13718989-13718853 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 61-415 |
| Cow position: | chr13:46549859-46549504 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 662-1054 |
| Cow position: | chr13:46548536-46548144 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 258 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 166, 157 |
| Conread position: | 1181-1358 |
| Cow position: | chr13:46547854-46547676 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 146 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 2-75 |
| Cow position: | chr19:22707366-22707292 (view UCSC Genome Browser custom track) |
| Alignm length: | 75 |
| Alignm identity: | 71 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 64-250 |
| Cow position: | chr19:22475914-22475728 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 161 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 64-250 |
| Cow position: | chr19:22523027-22522841 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 159 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 67-250 |
| Cow position: | chr19:2418178-2417995 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 166 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 67-250 |
| Cow position: | chr19:2444177-2443994 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 67-257 |
| Cow position: | chr19:22706962-22706772 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 149, 142 |
| Conread position: | 249-416 |
| Cow position: | chr19:22706204-22706037 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 249-421 |
| Cow position: | chr19:2417719-2417547 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 142 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 249-421 |
| Cow position: | chr19:2443914-2443742 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 158 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 249-421 |
| Cow position: | chr19:22475643-22475471 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 146 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 249-421 |
| Cow position: | chr19:22522756-22522584 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 144 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 406-542 |
| Cow position: | chr19:22522496-22522362 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 410-542 |
| Cow position: | chr19:22705780-22705649 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 417-542 |
| Cow position: | chr19:2417464-2417339 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 119 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 417-545 |
| Cow position: | chr19:2443647-2443519 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 122 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 417-550 |
| Cow position: | chr19:22475389-22475256 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 537-851 |
| Cow position: | chr19:22705181-22704867 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 540-851 |
| Cow position: | chr19:2416942-2416631 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 540-851 |
| Cow position: | chr19:2443358-2443047 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 540-851 |
| Cow position: | chr19:22474114-22473803 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 540-851 |
| Cow position: | chr19:22522100-22521789 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 841-1054 |
| Cow position: | chr19:22521162-22520948 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 849-1054 |
| Cow position: | chr19:2416547-2416342 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 849-1054 |
| Cow position: | chr19:2442963-2442758 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 849-1054 |
| Cow position: | chr19:22473168-22472963 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 849-1054 |
| Cow position: | chr19:22704753-22704548 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1036-1179 |
| Cow position: | chr19:22704492-22704349 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1051-1195 |
| Cow position: | chr19:2416016-2415873 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 131 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 1052-1181 |
| Cow position: | chr19:22471801-22471672 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1052-1195 |
| Cow position: | chr19:2442226-2442084 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 131 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 137, 0 |
| Conread position: | 1052-1195 |
| Cow position: | chr19:22519699-22519557 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 130 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 137, 0 |
| Conread position: | 1181-1354 |
| Cow position: | chr19:22519481-22519308 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 165 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1181-1357 |
| Cow position: | chr19:2415797-2415621 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 165 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1181-1357 |
| Cow position: | chr19:2442008-2441832 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 166 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1181-1357 |
| Cow position: | chr19:22471587-22471411 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 165 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1181-1358 |
| Cow position: | chr19:22703524-22703347 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 162 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1351-1456 |
| Cow position: | chr19:2415361-2415256 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1351-1456 |
| Cow position: | chr19:2441755-2441650 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1351-1456 |
| Cow position: | chr19:22471202-22471097 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 92 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1446-1553 |
| Cow position: | chr19:2441541-2441434 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1450-1553 |
| Cow position: | chr19:22470583-22470480 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 85 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1454-1551 |
| Cow position: | chr19:2415139-2415042 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 86 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1553-1681 |
| Cow position: | chr19:22702805-22702678 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 39, 44 |
| Conread position: | 1553-1764 |
| Cow position: | chr19:22517853-22517643 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 159 |
| Conread position: | 1553-1772 |
| Cow position: | chr19:2413075-2412857 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 152 |
| Conread position: | 1553-1772 |
| Cow position: | chr19:22469162-22468943 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 140 |
| Conread position: | 1553-1981 |
| Cow position: | chr19:2440161-2439737 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 412, 213 |
| Conread position: | 1968-2205 |
| Cow position: | chr19:2439520-2439279 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 159 |