Cow genome map
| Conread name: | Ss1.1-Mus1-POSM0100007_H10.3 |
| Conread position: | 1-316 |
| Cow position: | chr10:8996410-8996095 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-313 |
| Cow position: | chr13:39930836-39931143 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 197 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 110, 104 |
| Conread position: | 8-313 |
| Cow position: | chr13:22125287-22125592 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 77, 73 |
| Conread position: | 8-313 |
| Cow position: | chr13:24163013-24163318 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 77, 73 |
| Conread position: | 1-305 |
| Cow position: | chr14:3080576-3080272 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 92, 87 |
| Conread position: | 1-316 |
| Cow position: | chr14:447691-448006 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 195 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 32, 37 |
| Conread position: | 1-316 |
| Cow position: | chr14:3080828-3080513 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 285, 291 |
| Conread position: | 3-308 |
| Cow position: | chr14:3080070-3079765 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 186 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-305 |
| Cow position: | chr14:3156088-3156388 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 105, 112 |
| Conread position: | 6-317 |
| Cow position: | chr14:434085-434397 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 309, 0 |
| Conread position: | 6-317 |
| Cow position: | chr14:3061214-3060903 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 192, 187 |
| Conread position: | 9-308 |
| Cow position: | chr14:447531-447830 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 79, 89 |
| Conread position: | 19-274 |
| Cow position: | chr14:25836671-25836926 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 20-308 |
| Cow position: | chr14:3127817-3127529 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 37-304 |
| Cow position: | chr14:3127968-3127701 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 56, 51 |
| Conread position: | 45-308 |
| Cow position: | chr14:433872-434135 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 176, 190 |
| Conread position: | 6-343 |
| Cow position: | chr17:44467463-44467795 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 276, 286 |
| Conread position: | 6-380 |
| Cow position: | chr17:41440764-41440390 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 231 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 120, 128 |
| Conread position: | 20-316 |
| Cow position: | chr17:41440666-41440370 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 186 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 90, 98 |
| Conread position: | 1-308 |
| Cow position: | chr18:56330000-56329693 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 220, 247 |
| Conread position: | 1-316 |
| Cow position: | chr18:56316068-56316383 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 25, 47 |
| Conread position: | 1-316 |
| Cow position: | chr18:56329328-56329013 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 109, 124 |
| Conread position: | 5-308 |
| Cow position: | chr18:56329576-56329273 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-316 |
| Cow position: | chr18:56494035-56494346 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 216, 228 |
| Conread position: | 6-307 |
| Cow position: | chr18:56391239-56390938 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-307 |
| Cow position: | chr18:56391407-56391106 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 188 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 104, 111 |
| Conread position: | 6-308 |
| Cow position: | chr18:56329491-56329189 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 116, 103 |
| Conread position: | 6-316 |
| Cow position: | chr18:56391491-56391181 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 195 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 104, 112 |
| Conread position: | 20-316 |
| Cow position: | chr18:53635334-53635038 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 20-321 |
| Cow position: | chr18:49033092-49032791 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 201, 213 |
| Conread position: | 37-268 |
| Cow position: | chr18:52011800-52011569 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 39-308 |
| Cow position: | chr18:56329794-56329525 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 94, 77 |
| Conread position: | 6-321 |
| Cow position: | chr19:23649410-23649725 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 104, 117 |
| Conread position: | 1-308 |
| Cow position: | chr21:12659353-12659660 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 194 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 152, 147 |
| Conread position: | 4-284 |
| Cow position: | chr21:12659104-12659384 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 77, 81 |
| Conread position: | 6-281 |
| Cow position: | chr21:12658938-12659213 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 104, 113 |
| Conread position: | 6-282 |
| Cow position: | chr21:12659022-12659298 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 215, 227 |
| Conread position: | 6-283 |
| Cow position: | chr21:12659694-12659971 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-313 |
| Cow position: | chr21:12659190-12659497 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-313 |
| Cow position: | chr21:12659526-12659833 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-316 |
| Cow position: | chr21:12659274-12659584 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 206 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 104, 111 |
| Conread position: | 6-316 |
| Cow position: | chr21:12659442-12659752 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 104, 112 |
| Conread position: | 19-278 |
| Cow position: | chr21:12659623-12659882 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 91, 98 |
| Conread position: | 20-316 |
| Cow position: | chr21:12658868-12659164 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 7, 18 |
| Conread position: | 6-316 |
| Cow position: | chr23:25660173-25660483 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 104, 111 |
| Conread position: | 31-287 |
| Cow position: | chr23:25724080-25723824 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 200, 207 |
| Conread position: | 1-303 |
| Cow position: | chr25:34733993-34733691 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 199 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 25, 37 |
| Conread position: | 1-316 |
| Cow position: | chr25:34769688-34769373 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 139, 114 |
| Conread position: | 3-307 |
| Cow position: | chr25:25652710-25653014 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 149, 145 |
| Conread position: | 5-316 |
| Cow position: | chr25:25652208-25652519 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-274 |
| Cow position: | chr25:326518-326786 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-307 |
| Cow position: | chr25:25652797-25653098 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 192 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 106, 113 |
| Conread position: | 6-313 |
| Cow position: | chr25:25652545-25652852 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-316 |
| Cow position: | chr25:4657444-4657134 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 206 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 254, 249 |
| Conread position: | 6-316 |
| Cow position: | chr25:25652629-25652939 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 104, 112 |
| Conread position: | 19-280 |
| Cow position: | chr25:3664133-3664394 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 21, 17 |
| Conread position: | 20-308 |
| Cow position: | chr25:33157270-33156982 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 184 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 266, 272 |
| Conread position: | 20-316 |
| Cow position: | chr25:25652475-25652771 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 76, 85 |
| Conread position: | 19-219 |
| Cow position: | chr28:34696366-34696566 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 91, 98 |
| Conread position: | 60-284 |
| Cow position: | chr28:34696071-34696295 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 58, 51 |
| Conread position: | 60-284 |
| Cow position: | chr28:34696155-34696379 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 50, 57 |
| Conread position: | 1-934 |
| Cow position: | chr7:28846775-28847724 (view UCSC Genome Browser custom track) |
| Alignm length: | 955 |
| Alignm identity: | 768 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 334, 457 |
| Conread position: | 6-305 |
| Cow position: | chr7:18390435-18390734 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 187 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 118, 104 |
| Conread position: | 6-307 |
| Cow position: | chr7:12293285-12293586 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 280, 285 |
| Conread position: | 45-316 |
| Cow position: | chr7:12293492-12293763 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 914-1396 |
| Cow position: | chr7:28847672-28848145 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 47 |