Cow genome map
| Conread name: | Ss1.1-Ova1-OVR010009D11.5 |
| Conread position: | 1-343 |
| Cow position: | chr25:31264252-31263911 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 32-343 |
| Cow position: | chr25:31267654-31267343 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 23 |
| Conread position: | 42-330 |
| Cow position: | chr25:31269805-31269519 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 12 |
| Conread position: | 72-338 |
| Cow position: | chr25:31262284-31262018 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 19, 31 |
| Conread position: | 340-816 |
| Cow position: | chr25:31262325-31261851 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 392, 327 |
| Conread position: | 341-635 |
| Cow position: | chr25:31267655-31267360 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 9, 195 |
| Conread position: | 372-646 |
| Cow position: | chr25:31269785-31269511 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 125, 141 |
| Conread position: | 381-634 |
| Cow position: | chr25:31264182-31263929 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 30, 19 |
| Conread position: | 10-343 |
| Cow position: | chr26:28115647-28115315 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 42, 54 |
| Conread position: | 18-343 |
| Cow position: | chr26:28091143-28090819 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 32 |
| Conread position: | 32-343 |
| Cow position: | chr26:28156994-28156682 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 12, 20 |
| Conread position: | 32-343 |
| Cow position: | chr26:35114874-35114563 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 205 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 6, 23 |
| Conread position: | 37-343 |
| Cow position: | chr26:28139176-28138871 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 209 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 37-343 |
| Cow position: | chr26:28142753-28142448 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 209 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 37-343 |
| Cow position: | chr26:28163570-28163265 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 164, 16 |
| Conread position: | 38-343 |
| Cow position: | chr26:28111115-28110811 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 54, 24 |
| Conread position: | 38-343 |
| Cow position: | chr26:29303885-29303581 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 179, 15 |
| Conread position: | 39-343 |
| Cow position: | chr26:28152851-28152548 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 212 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 211, 11 |
| Conread position: | 39-343 |
| Cow position: | chr26:28160570-28160267 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 64, 11 |
| Conread position: | 39-343 |
| Cow position: | chr26:35110348-35110045 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 226, 20 |
| Conread position: | 65-343 |
| Cow position: | chr26:28178615-28178338 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 65-343 |
| Cow position: | chr26:28363140-28362862 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 152, 165 |
| Conread position: | 72-343 |
| Cow position: | chr26:28121363-28121092 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 348-647 |
| Cow position: | chr26:28111115-28110816 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 351-647 |
| Cow position: | chr26:35110346-35110050 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 23, 11 |
| Conread position: | 354-646 |
| Cow position: | chr26:28115613-28115321 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 12, 18 |
| Conread position: | 354-647 |
| Cow position: | chr26:28121390-28121097 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 58, 44 |
| Conread position: | 354-647 |
| Cow position: | chr26:28163563-28163270 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 56, 42 |
| Conread position: | 354-647 |
| Cow position: | chr26:28363160-28362867 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 189 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 354-647 |
| Cow position: | chr26:29303879-29303586 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 189 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 372-640 |
| Cow position: | chr26:35114843-35114575 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 40, 29 |
| Conread position: | 372-647 |
| Cow position: | chr26:28091099-28090824 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 40, 29 |
| Conread position: | 372-647 |
| Cow position: | chr26:28139151-28138876 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 40, 29 |
| Conread position: | 372-647 |
| Cow position: | chr26:28142728-28142453 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 373-647 |
| Cow position: | chr26:28156961-28156687 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 20, 37 |
| Conread position: | 373-647 |
| Cow position: | chr26:28160546-28160272 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 20, 37 |
| Conread position: | 375-634 |
| Cow position: | chr26:28152825-28152566 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 37, 25 |
| Conread position: | 375-651 |
| Cow position: | chr26:28129316-28129039 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 24, 33 |
| Conread position: | 411-647 |
| Cow position: | chr26:28178578-28178343 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 160, 59 |
| Conread position: | 29-343 |
| Cow position: | chr5:59812988-59812675 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 173, 37 |
| Conread position: | 29-343 |
| Cow position: | chr5:61228365-61228678 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 164, 37 |
| Conread position: | 29-343 |
| Cow position: | chr5:61237387-61237700 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 196 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 173, 21 |
| Conread position: | 29-343 |
| Cow position: | chr5:61285743-61286056 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 173, 37 |
| Conread position: | 29-343 |
| Cow position: | chr5:61296796-61297109 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 29-343 |
| Cow position: | chr5:61306131-61306444 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 173, 37 |
| Conread position: | 29-346 |
| Cow position: | chr5:59775603-59775287 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 173, 37 |
| Conread position: | 37-343 |
| Cow position: | chr5:61246370-61246675 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 193 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 165, 13 |
| Conread position: | 343-647 |
| Cow position: | chr5:59775599-59775295 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 54, 67 |
| Conread position: | 343-647 |
| Cow position: | chr5:59812984-59812680 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 54, 67 |
| Conread position: | 369-647 |
| Cow position: | chr5:61248718-61248997 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 7, 37 |