Cow genome map
| Conread name: | Ss1.1-Ova1-OVR010041G11.5 |
| Conread position: | 492-768 |
| Cow position: | chr10:31949867-31950140 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 76, 81 |
| Conread position: | 503-764 |
| Cow position: | chr10:38268146-38268401 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 250-632 |
| Cow position: | chr11:7876563-7876938 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 69 |
| Conread position: | 511-765 |
| Cow position: | chr11:38534562-38534313 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 607-768 |
| Cow position: | chr11:21402739-21402898 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 67, 80 |
| Conread position: | 640-768 |
| Cow position: | chr11:20649515-20649387 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 666-766 |
| Cow position: | chr11:69471163-69471263 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 83 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 492-723 |
| Cow position: | chr12:25270988-25271218 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 92, 114 |
| Conread position: | 630-765 |
| Cow position: | chr13:31844276-31844139 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 505-719 |
| Cow position: | chr14:14421593-14421807 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 83, 94 |
| Conread position: | 492-763 |
| Cow position: | chr15:8436696-8436430 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 92, 114 |
| Conread position: | 605-765 |
| Cow position: | chr15:20719618-20719775 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 492-768 |
| Cow position: | chr16:14605035-14604763 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 570-768 |
| Cow position: | chr16:20601152-20601341 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 16, 36 |
| Conread position: | 512-714 |
| Cow position: | chr17:44476757-44476950 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 72, 12 |
| Conread position: | 671-768 |
| Cow position: | chr17:40862541-40862446 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 82 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 492-768 |
| Cow position: | chr18:17149914-17149647 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 199 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 496-768 |
| Cow position: | chr18:8967883-8968153 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 77 |
| Conread position: | 504-768 |
| Cow position: | chr18:51774990-51774731 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 79, 102 |
| Conread position: | 556-768 |
| Cow position: | chr18:6124747-6124541 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 12, 50 |
| Conread position: | 583-763 |
| Cow position: | chr18:35899235-35899411 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 511-768 |
| Cow position: | chr19:117686-117940 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 77, 88 |
| Conread position: | 503-768 |
| Cow position: | chr2:63900305-63900042 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 96 |
| Conread position: | 504-759 |
| Cow position: | chr2:50965651-50965407 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 80, 38 |
| Conread position: | 504-768 |
| Cow position: | chr2:35971100-35970840 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 184 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 120, 13 |
| Conread position: | 531-768 |
| Cow position: | chr2:46959013-46959248 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 57, 74 |
| Conread position: | 614-768 |
| Cow position: | chr2:34508879-34508726 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 138, 111 |
| Conread position: | 1-768 |
| Cow position: | chr21:35447241-35446492 (view UCSC Genome Browser custom track) |
| Alignm length: | 771 |
| Alignm identity: | 678 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 413 |
| Conread position: | 573-768 |
| Cow position: | chr21:39031881-39031693 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 491-764 |
| Cow position: | chr22:20278780-20278517 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 533-765 |
| Cow position: | chr22:41366677-41366903 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 492-719 |
| Cow position: | chr23:26832148-26832376 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 176 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 75, 116 |
| Conread position: | 505-768 |
| Cow position: | chr23:2748203-2748462 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 530-768 |
| Cow position: | chr24:13253256-13253490 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 58, 69 |
| Conread position: | 611-764 |
| Cow position: | chr24:32744363-32744514 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 515-768 |
| Cow position: | chr27:8234760-8234511 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 178 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 74, 91 |
| Conread position: | 531-768 |
| Cow position: | chr27:8753556-8753790 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 582-765 |
| Cow position: | chr27:5947582-5947761 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 505-768 |
| Cow position: | chr28:25691195-25690936 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 191 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 79, 49 |
| Conread position: | 508-768 |
| Cow position: | chr28:7840100-7839841 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 63, 58 |
| Conread position: | 498-768 |
| Cow position: | chr29:5726193-5726452 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 198 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 69, 74 |
| Conread position: | 507-768 |
| Cow position: | chr3:28695982-28695722 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 192 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 76, 90 |
| Conread position: | 523-721 |
| Cow position: | chr3:34124896-34125094 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 23, 114 |
| Conread position: | 262-578 |
| Cow position: | chr4:43747430-43747745 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 228 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 127, 18 |
| Conread position: | 493-712 |
| Cow position: | chr4:11981454-11981673 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 74, 80 |
| Conread position: | 572-768 |
| Cow position: | chr4:4644656-4644849 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 12, 34 |
| Conread position: | 515-706 |
| Cow position: | chr5:26626726-26626915 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 69, 91 |
| Conread position: | 485-768 |
| Cow position: | chr7:46928967-46929252 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 120 |
| Conread position: | 503-765 |
| Cow position: | chr7:14420099-14419843 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 81, 28 |
| Conread position: | 504-765 |
| Cow position: | chr7:53992745-53992993 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 83, 95 |
| Conread position: | 555-768 |
| Cow position: | chr7:57554419-57554210 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 611-768 |
| Cow position: | chr7:41461142-41461296 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 659-768 |
| Cow position: | chr7:3896103-3895996 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 493-768 |
| Cow position: | chr8:50885296-50885567 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 91, 112 |
| Conread position: | 511-760 |
| Cow position: | chr8:19311582-19311335 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 181 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 76, 18 |
| Conread position: | 606-768 |
| Cow position: | chr8:1093933-1093774 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 606-768 |
| Cow position: | chr8:6321021-6320859 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 49, 118 |
| Conread position: | 636-764 |
| Cow position: | chr8:5719131-5719257 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 105 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 504-765 |
| Cow position: | chr9:13194603-13194851 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 539-768 |
| Cow position: | chr9:61265991-61266215 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 45, 29 |
| Conread position: | 605-768 |
| Cow position: | chr9:13819672-13819512 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 242-768 |
| Cow position: | chrX:22590428-22589900 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 181 |
| Conread position: | 459-765 |
| Cow position: | chrX:26461785-26461487 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 15 |
| Conread position: | 505-768 |
| Cow position: | chrX:12487110-12487370 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 120, 0 |