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Cow genome map

           
Conread name:
           
Ss1.1-Ova1-OVRM10012F06.5
        

               
Conread position:
               
65-726
               

               
Cow position:
               
chr1:40513292-40512636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
666
               

               
Alignm identity:
               
508
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 50
               

               
Conread position:
               
85-371
               

               
Cow position:
               
chr1:54365721-54365441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 33
               

               
Conread position:
               
92-294
               

               
Cow position:
               
chr1:58883954-58883753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
124, 25
               

               
Conread position:
               
94-385
               

               
Cow position:
               
chr1:67901815-67901513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 23
               

               
Conread position:
               
95-247
               

               
Cow position:
               
chr1:84149538-84149686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-259
               

               
Cow position:
               
chr1:40954018-40954181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
121, 14
               

               
Conread position:
               
95-262
               

               
Cow position:
               
chr1:52359161-52358995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-262
               

               
Cow position:
               
chr1:63605665-63605499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-265
               

               
Cow position:
               
chr1:48245928-48246099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
50, 22
               

               
Conread position:
               
95-267
               

               
Cow position:
               
chr1:99911075-99911246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-274
               

               
Cow position:
               
chr1:17941665-17941493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-274
               

               
Cow position:
               
chr1:33551035-33551212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
121, 14
               

               
Conread position:
               
95-277
               

               
Cow position:
               
chr1:40684574-40684393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
121, 17
               

               
Conread position:
               
95-278
               

               
Cow position:
               
chr1:56489957-56490139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-279
               

               
Cow position:
               
chr1:72981383-72981566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-280
               

               
Cow position:
               
chr1:33851395-33851578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-280
               

               
Cow position:
               
chr1:56163443-56163627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-280
               

               
Cow position:
               
chr1:61309119-61309303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-280
               

               
Cow position:
               
chr1:62244531-62244347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-280
               

               
Cow position:
               
chr1:80359062-80358880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-280
               

               
Cow position:
               
chr1:85882120-85882302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
121, 16
               

               
Conread position:
               
95-281
               

               
Cow position:
               
chr1:18406079-18405896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-288
               

               
Cow position:
               
chr1:38396345-38396538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
121, 89
               

               
Conread position:
               
95-292
               

               
Cow position:
               
chr1:87244927-87245124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-292
               

               
Cow position:
               
chr1:99348921-99348724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-293
               

               
Cow position:
               
chr1:17012622-17012425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-293
               

               
Cow position:
               
chr1:17036441-17036241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
39, 22
               

               
Conread position:
               
95-293
               

               
Cow position:
               
chr1:29362413-29362612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-293
               

               
Cow position:
               
chr1:40053472-40053669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
121, 12
               

               
Conread position:
               
95-293
               

               
Cow position:
               
chr1:40574332-40574529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-293
               

               
Cow position:
               
chr1:59210022-59209823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-293
               

               
Cow position:
               
chr1:60339422-60339621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
121, 14
               

               
Conread position:
               
95-293
               

               
Cow position:
               
chr1:67835023-67834825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-293
               

               
Cow position:
               
chr1:82652770-82652969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
118, 24
               

               
Conread position:
               
95-293
               

               
Cow position:
               
chr1:82913027-82912828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-293
               

               
Cow position:
               
chr1:86548018-86547821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-293
               

               
Cow position:
               
chr1:89425704-89425889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
121, 12
               

               
Conread position:
               
95-293
               

               
Cow position:
               
chr1:100597257-100597060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
121, 24
               

               
Conread position:
               
95-294
               

               
Cow position:
               
chr1:3385890-3385706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-294
               

               
Cow position:
               
chr1:8825167-8825364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
121, 10
               

               
Conread position:
               
95-294
               

               
Cow position:
               
chr1:21999841-21999643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-294
               

               
Cow position:
               
chr1:33712180-33712378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 22
               

               
Conread position:
               
95-294
               

               
Cow position:
               
chr1:40308179-40308372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
95-294
               

               
Cow position:
               
chr1:57367016-57366818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-294
               

               
Cow position:
               
chr1:57568067-57568266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
47, 22
               

               
Conread position:
               
95-294
               

               
Cow position:
               
chr1:68607427-68607229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
118, 22
               

               
Conread position:
               
95-294
               

               
Cow position:
               
chr1:69537016-69537211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
36, 22
               

               
Conread position:
               
95-294
               

               
Cow position:
               
chr1:72186756-72186567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
95-294
               

               
Cow position:
               
chr1:72657103-72657301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 14
               

               
Conread position:
               
95-294
               

               
Cow position:
               
chr1:73070940-73070742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-294
               

               
Cow position:
               
chr1:76752537-76752339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
121, 10
               

               
Conread position:
               
95-294
               

               
Cow position:
               
chr1:79456856-79456658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-294
               

               
Cow position:
               
chr1:82918545-82918350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 14
               

               
Conread position:
               
95-294
               

               
Cow position:
               
chr1:85780664-85780466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-294
               

               
Cow position:
               
chr1:86699101-86698903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
119, 22
               

               
Conread position:
               
95-294
               

               
Cow position:
               
chr1:87207311-87207114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-294
               

               
Cow position:
               
chr1:88130887-88131085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-294
               

               
Cow position:
               
chr1:88635488-88635685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-294
               

               
Cow position:
               
chr1:89770568-89770370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-294
               

               
Cow position:
               
chr1:91893002-91892809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-294
               

               
Cow position:
               
chr1:93854637-93854835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
121, 21
               

               
Conread position:
               
95-294
               

               
Cow position:
               
chr1:101149949-101150147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 21
               

               
Conread position:
               
95-295
               

               
Cow position:
               
chr1:91718521-91718323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
121, 12
               

               
Conread position:
               
95-301
               

               
Cow position:
               
chr1:56144222-56144017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-310
               

               
Cow position:
               
chr1:102556169-102556377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
118, 22
               

               
Conread position:
               
95-311
               

               
Cow position:
               
chr1:18244268-18244051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-314
               

               
Cow position:
               
chr1:42290504-42290722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 22
               

               
Conread position:
               
95-316
               

               
Cow position:
               
chr1:82924063-82923841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
119, 10
               

               
Conread position:
               
95-324
               

               
Cow position:
               
chr1:72080895-72081125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
121, 10
               

               
Conread position:
               
95-330
               

               
Cow position:
               
chr1:12062080-12061848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-330
               

               
Cow position:
               
chr1:79335688-79335450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-332
               

               
Cow position:
               
chr1:78289980-78290218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-334
               

               
Cow position:
               
chr1:79636814-79636577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-337
               

               
Cow position:
               
chr1:52232999-52232760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-342
               

               
Cow position:
               
chr1:57656661-57656908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-362
               

               
Cow position:
               
chr1:31330674-31330410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
108, 22
               

               
Conread position:
               
95-363
               

               
Cow position:
               
chr1:32341959-32341696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
151, 22
               

               
Conread position:
               
95-371
               

               
Cow position:
               
chr1:59933658-59933917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-385
               

               
Cow position:
               
chr1:30027429-30027146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 14
               

               
Conread position:
               
95-385
               

               
Cow position:
               
chr1:72136756-72137041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-396
               

               
Cow position:
               
chr1:5502050-5502348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-490
               

               
Cow position:
               
chr1:55322940-55322551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-681
               

               
Cow position:
               
chr1:24650873-24651438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 47
               

               
Conread position:
               
96-261
               

               
Cow position:
               
chr1:55276368-55276203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
38, 16
               

               
Conread position:
               
96-280
               

               
Cow position:
               
chr1:65386445-65386628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
120, 21
               

               
Conread position:
               
96-287
               

               
Cow position:
               
chr1:63501571-63501759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
120, 15
               

               
Conread position:
               
96-288
               

               
Cow position:
               
chr1:39543886-39544078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
45, 21
               

               
Conread position:
               
96-326
               

               
Cow position:
               
chr1:62853727-62853491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
119, 17
               

               
Conread position:
               
96-363
               

               
Cow position:
               
chr1:98661194-98660933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
45, 21
               

               
Conread position:
               
96-366
               

               
Cow position:
               
chr1:79109399-79109652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
120, 21
               

               
Conread position:
               
96-371
               

               
Cow position:
               
chr1:25887047-25886774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 105
               

               
Conread position:
               
97-280
               

               
Cow position:
               
chr1:95239488-95239670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
119, 12
               

               
Conread position:
               
97-293
               

               
Cow position:
               
chr1:8554447-8554642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
119, 12
               

               
Conread position:
               
97-293
               

               
Cow position:
               
chr1:20829008-20829205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
119, 12
               

               
Conread position:
               
107-325
               

               
Cow position:
               
chr1:76545413-76545201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
109, 178
               

               
Conread position:
               
109-322
               

               
Cow position:
               
chr1:98865024-98864811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
107, 143
               

               
Conread position:
               
110-294
               

               
Cow position:
               
chr1:28801274-28801086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
112-236
               

               
Cow position:
               
chr1:102549379-102549502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
104, 22
               

               
Conread position:
               
112-264
               

               
Cow position:
               
chr1:89740132-89739985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
104, 48
               

               
Conread position:
               
112-279
               

               
Cow position:
               
chr1:42736584-42736751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
112-279
               

               
Cow position:
               
chr1:67286622-67286785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
28, 47
               

               
Conread position:
               
112-279
               

               
Cow position:
               
chr1:69922307-69922139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
112-280
               

               
Cow position:
               
chr1:25179899-25179730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
112-280
               

               
Cow position:
               
chr1:28873205-28873374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
112-280
               

               
Cow position:
               
chr1:58335966-58336135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
112-287
               

               
Cow position:
               
chr1:101857852-101857678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 11
               

               
Conread position:
               
112-293
               

               
Cow position:
               
chr1:28723004-28723187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
112-293
               

               
Cow position:
               
chr1:56193800-56193618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
112-293
               

               
Cow position:
               
chr1:102434907-102434726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
104, 74
               

               
Conread position:
               
112-294
               

               
Cow position:
               
chr1:13645845-13646026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 62
               

               
Conread position:
               
112-294
               

               
Cow position:
               
chr1:49974059-49973876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
112-294
               

               
Cow position:
               
chr1:97226574-97226397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
104, 45
               

               
Conread position:
               
112-326
               

               
Cow position:
               
chr1:31365945-31365728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
54, 61
               

               
Conread position:
               
112-327
               

               
Cow position:
               
chr1:76622826-76622618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
104, 170
               

               
Conread position:
               
112-350
               

               
Cow position:
               
chr1:69060627-69060865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
168, 43
               

               
Conread position:
               
112-365
               

               
Cow position:
               
chr1:5318878-5319126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
32, 47
               

               
Conread position:
               
112-371
               

               
Cow position:
               
chr1:89479447-89479701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 21
               

               
Conread position:
               
113-294
               

               
Cow position:
               
chr1:38414933-38415112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 26
               

               
Conread position:
               
113-306
               

               
Cow position:
               
chr1:45097829-45098021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
103, 129
               

               
Conread position:
               
114-219
               

               
Cow position:
               
chr1:33895813-33895918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
114-279
               

               
Cow position:
               
chr1:85791820-85791986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
114-292
               

               
Cow position:
               
chr1:71562440-71562260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
114-293
               

               
Cow position:
               
chr1:9382411-9382232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
102, 71
               

               
Conread position:
               
114-293
               

               
Cow position:
               
chr1:11291972-11291790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
102, 58
               

               
Conread position:
               
114-293
               

               
Cow position:
               
chr1:18880259-18880079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
114-293
               

               
Cow position:
               
chr1:21087547-21087729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
114-293
               

               
Cow position:
               
chr1:28711050-28711230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
27, 18
               

               
Conread position:
               
114-293
               

               
Cow position:
               
chr1:30283409-30283227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
114-293
               

               
Cow position:
               
chr1:31396824-31397004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
114-293
               

               
Cow position:
               
chr1:56723289-56723470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
102, 49
               

               
Conread position:
               
114-293
               

               
Cow position:
               
chr1:62925747-62925927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
114-293
               

               
Cow position:
               
chr1:69766596-69766778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
114-293
               

               
Cow position:
               
chr1:82564637-82564819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
114-293
               

               
Cow position:
               
chr1:91899130-91899312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
114-294
               

               
Cow position:
               
chr1:89899570-89899391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
102, 94
               

               
Conread position:
               
114-332
               

               
Cow position:
               
chr1:1461199-1460974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
21, 89
               

               
Conread position:
               
114-354
               

               
Cow position:
               
chr1:34689473-34689715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
115-616
               

               
Cow position:
               
chr1:94253052-94253549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 208
               

               
Conread position:
               
116-294
               

               
Cow position:
               
chr1:97123947-97124122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
94, 42
               

               
Conread position:
               
119-293
               

               
Cow position:
               
chr1:53198689-53198865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
22, 13
               

               
Conread position:
               
119-726
               

               
Cow position:
               
chr1:21720027-21720621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
610
               

               
Alignm identity:
               
463
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 210
               

               
Conread position:
               
120-293
               

               
Cow position:
               
chr1:94659821-94659995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
120-574
               

               
Cow position:
               
chr1:42870103-42869646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 170
               

               
Conread position:
               
121-293
               

               
Cow position:
               
chr1:13450347-13450522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
127-294
               

               
Cow position:
               
chr1:59674596-59674764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
127-294
               

               
Cow position:
               
chr1:69403126-69403294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
130-294
               

               
Cow position:
               
chr1:18027620-18027455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
139-337
               

               
Cow position:
               
chr1:72039190-72038992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 183
               

               
Conread position:
               
143-292
               

               
Cow position:
               
chr1:87516121-87515970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
166-288
               

               
Cow position:
               
chr1:5355312-5355435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
166-294
               

               
Cow position:
               
chr1:30534839-30534710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
173-293
               

               
Cow position:
               
chr1:57424646-57424523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
201-314
               

               
Cow position:
               
chr1:37419552-37419443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
15, 88
               

               
Conread position:
               
205-479
               

               
Cow position:
               
chr1:38387478-38387221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
226-365
               

               
Cow position:
               
chr1:58179897-58179760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
28, 20
               

               
Conread position:
               
227-366
               

               
Cow position:
               
chr1:45021950-45021812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
242-385
               

               
Cow position:
               
chr1:31418696-31418555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
301-727
               

               
Cow position:
               
chr1:67286827-67287239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 27
               

               
Conread position:
               
319-727
               

               
Cow position:
               
chr1:77656107-77656495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
52, 25
               

               
Conread position:
               
376-681
               

               
Cow position:
               
chr1:30027065-30026779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
135, 11
               

               
Conread position:
               
379-674
               

               
Cow position:
               
chr1:34690084-34690377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
55, 116
               

               
Conread position:
               
383-566
               

               
Cow position:
               
chr1:23051541-23051719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
383-636
               

               
Cow position:
               
chr1:31418469-31418215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
34, 107
               

               
Conread position:
               
383-698
               

               
Cow position:
               
chr1:73011177-73011490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
62, 20
               

               
Conread position:
               
383-722
               

               
Cow position:
               
chr1:91445348-91445682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
11, 19
               

               
Conread position:
               
383-726
               

               
Cow position:
               
chr1:33389190-33389541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
41, 52
               

               
Conread position:
               
383-727
               

               
Cow position:
               
chr1:63501922-63502262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
29, 20
               

               
Conread position:
               
415-712
               

               
Cow position:
               
chr1:15026455-15026752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
29, 103
               

               
Conread position:
               
439-722
               

               
Cow position:
               
chr1:25886622-25886357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
72, 38
               

               
Conread position:
               
443-732
               

               
Cow position:
               
chr1:29033248-29033533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
185, 41
               

               
Conread position:
               
447-723
               

               
Cow position:
               
chr1:7143617-7143354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
164, 23
               

               
Conread position:
               
450-732
               

               
Cow position:
               
chr1:46836106-46836378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
55, 48
               

               
Conread position:
               
468-727
               

               
Cow position:
               
chr1:88270058-88269800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
154, 29
               

               
Conread position:
               
477-720
               

               
Cow position:
               
chr1:29413980-29413744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
483-727
               

               
Cow position:
               
chr1:58179536-58179293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
23, 62
               

               
Conread position:
               
485-727
               

               
Cow position:
               
chr1:78361321-78361552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
103, 19
               

               
Conread position:
               
493-727
               

               
Cow position:
               
chr1:22344110-22344328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
18, 49
               

               
Conread position:
               
495-732
               

               
Cow position:
               
chr1:30059104-30059332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
99, 21
               

               
Conread position:
               
509-705
               

               
Cow position:
               
chr1:38387151-38386969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
510-722
               

               
Cow position:
               
chr1:67328070-67327859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
128, 48
               

               
Conread position:
               
510-727
               

               
Cow position:
               
chr1:98659686-98659484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
527-726
               

               
Cow position:
               
chr1:55321934-55321731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
86, 41
               

               
Conread position:
               
528-732
               

               
Cow position:
               
chr1:85780568-85780364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
40, 11
               

               
Conread position:
               
528-732
               

               
Cow position:
               
chr1:86699005-86698802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
40, 11
               

               
Conread position:
               
531-727
               

               
Cow position:
               
chr1:59934363-59934564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
51, 34
               

               
Conread position:
               
546-727
               

               
Cow position:
               
chr1:62853625-62853441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
546-732
               

               
Cow position:
               
chr1:78290084-78290275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
548-727
               

               
Cow position:
               
chr1:86610069-86610243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
80, 8
               

               
Conread position:
               
552-732
               

               
Cow position:
               
chr1:72186642-72186464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
40, 47
               

               
Conread position:
               
560-726
               

               
Cow position:
               
chr1:30518935-30519100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
59, 73
               

               
Conread position:
               
626-727
               

               
Cow position:
               
chr1:30534712-30534613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
102
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
626-727
               

               
Cow position:
               
chr1:88131083-88131182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
102
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
626-727
               

               
Cow position:
               
chr1:97124120-97124220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
24, 17
               

               
Conread position:
               
626-732
               

               
Cow position:
               
chr1:21999645-21999541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
626-732
               

               
Cow position:
               
chr1:28873386-28873490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
626-732
               

               
Cow position:
               
chr1:33551236-33551340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
626-732
               

               
Cow position:
               
chr1:57366820-57366716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
626-732
               

               
Cow position:
               
chr1:73070744-73070640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
626-732
               

               
Cow position:
               
chr1:91892811-91892707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
627-721
               

               
Cow position:
               
chr1:17012435-17012340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
96
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
630-727
               

               
Cow position:
               
chr1:69537211-69537309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
99
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
630-732
               

               
Cow position:
               
chr1:42736768-42736867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
630-732
               

               
Cow position:
               
chr1:94659998-94660098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
631-732
               

               
Cow position:
               
chr1:48246160-48246260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
102
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
632-727
               

               
Cow position:
               
chr1:49973875-49973780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
97
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
14, 33
               

               
Conread position:
               
632-727
               

               
Cow position:
               
chr1:102549550-102549647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
98
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
636-728
               

               
Cow position:
               
chr1:82923859-82923767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
93
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
637-732
               

               
Cow position:
               
chr1:97226390-97226295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
96
               

               
Alignm identity:
               
80
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
90-294
               

               
Cow position:
               
chr10:62778481-62778686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 28
               

               
Conread position:
               
92-288
               

               
Cow position:
               
chr10:11820470-11820663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
121, 25
               

               
Conread position:
               
94-357
               

               
Cow position:
               
chr10:3543443-3543194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
121, 23
               

               
Conread position:
               
95-214
               

               
Cow position:
               
chr10:55093381-55093496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
95-226
               

               
Cow position:
               
chr10:29632723-29632594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
95-251
               

               
Cow position:
               
chr10:38538357-38538198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
99, 22
               

               
Conread position:
               
95-269
               

               
Cow position:
               
chr10:7282547-7282374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-271
               

               
Cow position:
               
chr10:46694236-46694062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-274
               

               
Cow position:
               
chr10:62408717-62408539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
119, 22
               

               
Conread position:
               
95-279
               

               
Cow position:
               
chr10:47906918-47907101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-280
               

               
Cow position:
               
chr10:10581937-10582127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
67, 22
               

               
Conread position:
               
95-280
               

               
Cow position:
               
chr10:25359539-25359723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-280
               

               
Cow position:
               
chr10:51952478-51952298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
121, 14
               

               
Conread position:
               
95-281
               

               
Cow position:
               
chr10:13365730-13365545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
47, 22
               

               
Conread position:
               
95-288
               

               
Cow position:
               
chr10:47157088-47157280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-290
               

               
Cow position:
               
chr10:41877059-41877252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-292
               

               
Cow position:
               
chr10:25498492-25498689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-292
               

               
Cow position:
               
chr10:39817223-39817027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-293
               

               
Cow position:
               
chr10:280481-280282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-293
               

               
Cow position:
               
chr10:4192093-4191887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
75, 22
               

               
Conread position:
               
95-293
               

               
Cow position:
               
chr10:8290123-8290315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
121, 14
               

               
Conread position:
               
95-293
               

               
Cow position:
               
chr10:11685531-11685334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-293
               

               
Cow position:
               
chr10:16925676-16925872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-293
               

               
Cow position:
               
chr10:19496146-19495947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-293
               

               
Cow position:
               
chr10:21400531-21400332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-293
               

               
Cow position:
               
chr10:21740612-21740413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
121, 12
               

               
Conread position:
               
95-293
               

               
Cow position:
               
chr10:37769961-37770158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
121, 21
               

               
Conread position:
               
95-293
               

               
Cow position:
               
chr10:39179923-39180122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-293
               

               
Cow position:
               
chr10:41157588-41157786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-294
               

               
Cow position:
               
chr10:124450-124648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
121, 15
               

               
Conread position:
               
95-294
               

               
Cow position:
               
chr10:1375671-1375871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
108, 22
               

               
Conread position:
               
95-294
               

               
Cow position:
               
chr10:2123122-2122924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
121, 12
               

               
Conread position:
               
95-294
               

               
Cow position:
               
chr10:32650873-32651071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
121, 24
               

               
Conread position:
               
95-294
               

               
Cow position:
               
chr10:39853874-39853672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 24
               

               
Conread position:
               
95-294
               

               
Cow position:
               
chr10:62216746-62216945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-301
               

               
Cow position:
               
chr10:34686033-34686239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 22
               

               
Conread position:
               
95-306
               

               
Cow position:
               
chr10:19511746-19511956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
121, 10
               

               
Conread position:
               
95-325
               

               
Cow position:
               
chr10:10478001-10477768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 22
               

               
Conread position:
               
95-325
               

               
Cow position:
               
chr10:22101372-22101598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
119, 10
               

               
Conread position:
               
95-359
               

               
Cow position:
               
chr10:60192271-60192534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-366
               

               
Cow position:
               
chr10:31537406-31537665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
121, 24
               

               
Conread position:
               
95-370
               

               
Cow position:
               
chr10:20371832-20371565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
171, 15
               

               
Conread position:
               
95-371
               

               
Cow position:
               
chr10:29696376-29696646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-371
               

               
Cow position:
               
chr10:38847498-38847757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
121, 15
               

               
Conread position:
               
95-378
               

               
Cow position:
               
chr10:41351620-41351340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
123, 22
               

               
Conread position:
               
95-385
               

               
Cow position:
               
chr10:8328133-8327846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 22
               

               
Conread position:
               
95-385
               

               
Cow position:
               
chr10:14860106-14860393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 21
               

               
Conread position:
               
95-385
               

               
Cow position:
               
chr10:15861997-15861705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-385
               

               
Cow position:
               
chr10:46191498-46191781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-719
               

               
Cow position:
               
chr10:38546085-38545477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
627
               

               
Alignm identity:
               
479
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 22
               

               
Conread position:
               
95-723
               

               
Cow position:
               
chr10:31523939-31524526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
632
               

               
Alignm identity:
               
469
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
96-362
               

               
Cow position:
               
chr10:184410-184676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
88, 20
               

               
Conread position:
               
96-371
               

               
Cow position:
               
chr10:34318150-34317885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
41, 21
               

               
Conread position:
               
96-387
               

               
Cow position:
               
chr10:33346741-33347029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 21
               

               
Conread position:
               
97-293
               

               
Cow position:
               
chr10:19758493-19758685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
54, 12
               

               
Conread position:
               
97-293
               

               
Cow position:
               
chr10:19802698-19802890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
54, 12
               

               
Conread position:
               
97-316
               

               
Cow position:
               
chr10:40152313-40152092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
118, 8
               

               
Conread position:
               
97-694
               

               
Cow position:
               
chr10:42628765-42629356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
463
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 20
               

               
Conread position:
               
109-294
               

               
Cow position:
               
chr10:57989837-57989656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
107, 23
               

               
Conread position:
               
109-295
               

               
Cow position:
               
chr10:24977987-24977799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
112-293
               

               
Cow position:
               
chr10:39041147-39040965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
112-294
               

               
Cow position:
               
chr10:21487069-21487253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
112-294
               

               
Cow position:
               
chr10:38345207-38345024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
112-385
               

               
Cow position:
               
chr10:10415552-10415814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
23, 149
               

               
Conread position:
               
113-247
               

               
Cow position:
               
chr10:39905098-39905232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
103, 29
               

               
Conread position:
               
113-387
               

               
Cow position:
               
chr10:24298698-24298428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 108
               

               
Conread position:
               
114-293
               

               
Cow position:
               
chr10:14803993-14804175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
114-293
               

               
Cow position:
               
chr10:25565101-25564919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
102, 138
               

               
Conread position:
               
114-293
               

               
Cow position:
               
chr10:32578446-32578627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
102, 151
               

               
Conread position:
               
116-363
               

               
Cow position:
               
chr10:40751807-40752054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
100, 81
               

               
Conread position:
               
120-293
               

               
Cow position:
               
chr10:41567266-41567441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
96, 152
               

               
Conread position:
               
121-365
               

               
Cow position:
               
chr10:22842914-22843159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
95, 21
               

               
Conread position:
               
122-294
               

               
Cow position:
               
chr10:29846486-29846314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
94, 150
               

               
Conread position:
               
135-293
               

               
Cow position:
               
chr10:57559358-57559197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
79, 122
               

               
Conread position:
               
139-276
               

               
Cow position:
               
chr10:19497134-19496996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
148-453
               

               
Cow position:
               
chr10:54979280-54978977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 119
               

               
Conread position:
               
152-327
               

               
Cow position:
               
chr10:14952064-14952240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
163-293
               

               
Cow position:
               
chr10:56064879-56065010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
166-383
               

               
Cow position:
               
chr10:49310694-49310913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
168-279
               

               
Cow position:
               
chr10:68599083-68598970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
183-336
               

               
Cow position:
               
chr10:42679599-42679754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
189-294
               

               
Cow position:
               
chr10:24061574-24061468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
200-402
               

               
Cow position:
               
chr10:28931570-28931366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
16, 30
               

               
Conread position:
               
209-385
               

               
Cow position:
               
chr10:60489846-60490022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
7, 45
               

               
Conread position:
               
228-482
               

               
Cow position:
               
chr10:8339168-8339419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 33
               

               
Conread position:
               
383-655
               

               
Cow position:
               
chr10:33347113-33347385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 98
               

               
Conread position:
               
383-722
               

               
Cow position:
               
chr10:14861358-14861688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 20
               

               
Conread position:
               
383-732
               

               
Cow position:
               
chr10:28931299-28930952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 42
               

               
Conread position:
               
418-704
               

               
Cow position:
               
chr10:60192676-60192947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
220, 81
               

               
Conread position:
               
427-732
               

               
Cow position:
               
chr10:46191856-46192139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
190, 36
               

               
Conread position:
               
442-732
               

               
Cow position:
               
chr10:15860741-15860472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
443-727
               

               
Cow position:
               
chr10:41775083-41774797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
55, 62
               

               
Conread position:
               
461-661
               

               
Cow position:
               
chr10:13364346-13364144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
47, 31
               

               
Conread position:
               
461-661
               

               
Cow position:
               
chr10:13365536-13365334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
47, 31
               

               
Conread position:
               
474-729
               

               
Cow position:
               
chr10:38847900-38848148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
151, 18
               

               
Conread position:
               
477-711
               

               
Cow position:
               
chr10:41631688-41631912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
16, 93
               

               
Conread position:
               
485-722
               

               
Cow position:
               
chr10:21900585-21900352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
137, 23
               

               
Conread position:
               
487-732
               

               
Cow position:
               
chr10:32064768-32065024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
512-732
               

               
Cow position:
               
chr10:26596826-26597052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
41, 73
               

               
Conread position:
               
522-714
               

               
Cow position:
               
chr10:20370987-20370805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
98, 36
               

               
Conread position:
               
552-732
               

               
Cow position:
               
chr10:42749026-42749209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
64, 94
               

               
Conread position:
               
557-732
               

               
Cow position:
               
chr10:42110597-42110774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
38, 88
               

               
Conread position:
               
599-732
               

               
Cow position:
               
chr10:17432952-17432817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
69, 27
               

               
Conread position:
               
606-726
               

               
Cow position:
               
chr10:8339712-8339831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
77, 26
               

               
Conread position:
               
626-726
               

               
Cow position:
               
chr10:21487251-21487349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
101
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
626-727
               

               
Cow position:
               
chr10:19511942-19512039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
102
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
626-727
               

               
Cow position:
               
chr10:38538169-38538069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
102
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
626-732
               

               
Cow position:
               
chr10:32651069-32651173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
626-732
               

               
Cow position:
               
chr10:38345026-38344921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
626-732
               

               
Cow position:
               
chr10:57989658-57989554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
627-732
               

               
Cow position:
               
chr10:25359736-25359839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
92-229
               

               
Cow position:
               
chr11:66726239-66726375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
121, 25
               

               
Conread position:
               
92-274
               

               
Cow position:
               
chr11:28054825-28054644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
124, 25
               

               
Conread position:
               
95-250
               

               
Cow position:
               
chr11:40776764-40776610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-261
               

               
Cow position:
               
chr11:43732186-43732347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-264
               

               
Cow position:
               
chr11:28229975-28229807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-269
               

               
Cow position:
               
chr11:77728749-77728569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
47, 22
               

               
Conread position:
               
95-271
               

               
Cow position:
               
chr11:77235493-77235668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
121, 21
               

               
Conread position:
               
95-280
               

               
Cow position:
               
chr11:37477341-37477157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
119, 22
               

               
Conread position:
               
95-280
               

               
Cow position:
               
chr11:43514852-43514668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-280
               

               
Cow position:
               
chr11:85394033-85393849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-281
               

               
Cow position:
               
chr11:8519771-8519952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-288
               

               
Cow position:
               
chr11:31414147-31413963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
95-292
               

               
Cow position:
               
chr11:28063459-28063650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-292
               

               
Cow position:
               
chr11:37065343-37065143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-293
               

               
Cow position:
               
chr11:1496296-1496097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-293
               

               
Cow position:
               
chr11:3492789-3492988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-293
               

               
Cow position:
               
chr11:9606799-9606603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
108, 14
               

               
Conread position:
               
95-293
               

               
Cow position:
               
chr11:15983402-15983601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-293
               

               
Cow position:
               
chr11:24393095-24393292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-293
               

               
Cow position:
               
chr11:29668850-29668656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-293
               

               
Cow position:
               
chr11:33194775-33194576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-293
               

               
Cow position:
               
chr11:38505826-38505628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
121, 19
               

               
Conread position:
               
95-293
               

               
Cow position:
               
chr11:52886719-52886528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
116, 22
               

               
Conread position:
               
95-293
               

               
Cow position:
               
chr11:53287677-53287479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
121, 15
               

               
Conread position:
               
95-293
               

               
Cow position:
               
chr11:72110187-72109990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-294
               

               
Cow position:
               
chr11:4271093-4270885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-294
               

               
Cow position:
               
chr11:8887378-8887182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-294
               

               
Cow position:
               
chr11:12351287-12351089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-294
               

               
Cow position:
               
chr11:21466855-21467053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-294
               

               
Cow position:
               
chr11:23877081-23877278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
121, 20
               

               
Conread position:
               
95-294
               

               
Cow position:
               
chr11:41170914-41170716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-294
               

               
Cow position:
               
chr11:71329422-71329620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-295
               

               
Cow position:
               
chr11:34020666-34020867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 22
               

               
Conread position:
               
95-316
               

               
Cow position:
               
chr11:8244485-8244704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-336
               

               
Cow position:
               
chr11:17220441-17220198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 22
               

               
Conread position:
               
95-348
               

               
Cow position:
               
chr11:17280516-17280279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
96-233
               

               
Cow position:
               
chr11:10210184-10210048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
120, 17
               

               
Conread position:
               
96-273
               

               
Cow position:
               
chr11:12358646-12358470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
120, 21
               

               
Conread position:
               
96-278
               

               
Cow position:
               
chr11:7113375-7113554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
40, 10
               

               
Conread position:
               
96-348
               

               
Cow position:
               
chr11:4065455-4065199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
54, 21
               

               
Conread position:
               
97-247
               

               
Cow position:
               
chr11:30305009-30305158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
119, 140
               

               
Conread position:
               
97-293
               

               
Cow position:
               
chr11:20920965-20920770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
119, 12
               

               
Conread position:
               
97-293
               

               
Cow position:
               
chr11:25527339-25527533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 20
               

               
Conread position:
               
97-293
               

               
Cow position:
               
chr11:64045778-64045973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
119, 12
               

               
Conread position:
               
97-293
               

               
Cow position:
               
chr11:73477088-73477283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
119, 12
               

               
Conread position:
               
97-371
               

               
Cow position:
               
chr11:42429114-42429388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 14
               

               
Conread position:
               
97-732
               

               
Cow position:
               
chr11:10090113-10090754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
654
               

               
Alignm identity:
               
506
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 20
               

               
Conread position:
               
98-292
               

               
Cow position:
               
chr11:8261922-8261730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 19
               

               
Conread position:
               
99-294
               

               
Cow position:
               
chr11:37491860-37491670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
5, 19
               

               
Conread position:
               
107-340
               

               
Cow position:
               
chr11:45111156-45111392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 7
               

               
Conread position:
               
109-293
               

               
Cow position:
               
chr11:12093347-12093533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
112-241
               

               
Cow position:
               
chr11:44860736-44860606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
112-251
               

               
Cow position:
               
chr11:9157633-9157500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
104, 46
               

               
Conread position:
               
112-272
               

               
Cow position:
               
chr11:19102693-19102532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
112-274
               

               
Cow position:
               
chr11:37093268-37093106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
104, 133
               

               
Conread position:
               
112-280
               

               
Cow position:
               
chr11:38835628-38835469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
112-287
               

               
Cow position:
               
chr11:54209409-54209582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
24, 58
               

               
Conread position:
               
112-288
               

               
Cow position:
               
chr11:9220327-9220149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
112-293
               

               
Cow position:
               
chr11:4041278-4041099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
104, 11
               

               
Conread position:
               
112-293
               

               
Cow position:
               
chr11:26125138-26124956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
112-294
               

               
Cow position:
               
chr11:11987901-11988083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
104, 96
               

               
Conread position:
               
112-316
               

               
Cow position:
               
chr11:4027770-4027563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
113-294
               

               
Cow position:
               
chr11:10847239-10847418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
103, 55
               

               
Conread position:
               
113-496
               

               
Cow position:
               
chr11:8282870-8283243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
255, 216
               

               
Conread position:
               
114-261
               

               
Cow position:
               
chr11:9734852-9734705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
102, 68
               

               
Conread position:
               
114-280
               

               
Cow position:
               
chr11:5343422-5343255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
114-280
               

               
Cow position:
               
chr11:17107891-17107724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
114-280
               

               
Cow position:
               
chr11:63659786-63659626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
102, 123
               

               
Conread position:
               
114-290
               

               
Cow position:
               
chr11:32450663-32450839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
102, 9
               

               
Conread position:
               
114-293
               

               
Cow position:
               
chr11:19064454-19064272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
114-293
               

               
Cow position:
               
chr11:36744385-36744205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
114-293
               

               
Cow position:
               
chr11:52419183-52419365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
114-293
               

               
Cow position:
               
chr11:57628251-57628069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
114-293
               

               
Cow position:
               
chr11:61401256-61401076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
114-293
               

               
Cow position:
               
chr11:67846776-67846594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
114-574
               

               
Cow position:
               
chr11:7316668-7317125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 65
               

               
Conread position:
               
115-293
               

               
Cow position:
               
chr11:67450295-67450475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
101, 24
               

               
Conread position:
               
120-294
               

               
Cow position:
               
chr11:31925969-31926147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
50, 36
               

               
Conread position:
               
134-292
               

               
Cow position:
               
chr11:9659572-9659412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
148-324
               

               
Cow position:
               
chr11:76374371-76374195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
68, 91
               

               
Conread position:
               
155-294
               

               
Cow position:
               
chr11:53432230-53432090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
162-292
               

               
Cow position:
               
chr11:59369452-59369582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
54, 8
               

               
Conread position:
               
176-264
               

               
Cow position:
               
chr11:15998793-15998882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
90
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
180-294
               

               
Cow position:
               
chr11:8267681-8267566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
188-294
               

               
Cow position:
               
chr11:256318-256211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
196-383
               

               
Cow position:
               
chr11:10050589-10050777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
179, 0
               

               
Conread position:
               
255-445
               

               
Cow position:
               
chr11:30125102-30124909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
29, 74
               

               
Conread position:
               
268-690
               

               
Cow position:
               
chr11:7113838-7114239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
235, 16
               

               
Conread position:
               
383-616
               

               
Cow position:
               
chr11:10050858-10051079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
383-690
               

               
Cow position:
               
chr11:17180287-17180587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
56, 63
               

               
Conread position:
               
383-719
               

               
Cow position:
               
chr11:39802176-39802507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
248, 65
               

               
Conread position:
               
383-732
               

               
Cow position:
               
chr11:87128524-87128862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
55, 35
               

               
Conread position:
               
433-703
               

               
Cow position:
               
chr11:9220177-9219909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
75, 60
               

               
Conread position:
               
442-719
               

               
Cow position:
               
chr11:28049413-28049137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
70, 38
               

               
Conread position:
               
458-727
               

               
Cow position:
               
chr11:28063645-28063914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 24
               

               
Conread position:
               
458-732
               

               
Cow position:
               
chr11:8261735-8261469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
51, 26
               

               
Conread position:
               
468-732
               

               
Cow position:
               
chr11:50028042-50027777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
113, 18
               

               
Conread position:
               
482-722
               

               
Cow position:
               
chr11:21443152-21443382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
126, 19
               

               
Conread position:
               
483-732
               

               
Cow position:
               
chr11:8283286-8283550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 83
               

               
Conread position:
               
497-723
               

               
Cow position:
               
chr11:30124579-30124351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 43
               

               
Conread position:
               
498-732
               

               
Cow position:
               
chr11:59369662-59369894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
10, 43
               

               
Conread position:
               
501-726
               

               
Cow position:
               
chr11:38037265-38037504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
10, 65
               

               
Conread position:
               
510-732
               

               
Cow position:
               
chr11:52886189-52885970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
130, 48
               

               
Conread position:
               
516-689
               

               
Cow position:
               
chr11:42429873-42430050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
78, 29
               

               
Conread position:
               
552-727
               

               
Cow position:
               
chr11:44495552-44495377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
118, 16
               

               
Conread position:
               
561-727
               

               
Cow position:
               
chr11:66727278-66727446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
36, 70
               

               
Conread position:
               
588-726
               

               
Cow position:
               
chr11:30125314-30125173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
603-732
               

               
Cow position:
               
chr11:84389577-84389704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
626-727
               

               
Cow position:
               
chr11:10847416-10847515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
102
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
626-727
               

               
Cow position:
               
chr11:23877276-23877376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
102
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
626-728
               

               
Cow position:
               
chr11:8267568-8267465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
626-732
               

               
Cow position:
               
chr11:4270887-4270783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
626-732
               

               
Cow position:
               
chr11:11988081-11988185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
626-732
               

               
Cow position:
               
chr11:38835457-38835353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
626-732
               

               
Cow position:
               
chr11:41170718-41170615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
626-732
               

               
Cow position:
               
chr11:44157279-44157175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
626-732
               

               
Cow position:
               
chr11:53432092-53431988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
630-732
               

               
Cow position:
               
chr11:54209588-54209690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
632-727
               

               
Cow position:
               
chr11:12358445-12358351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
96
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
632-732
               

               
Cow position:
               
chr11:58134364-58134465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
5, 34
               

               
Conread position:
               
646-727
               

               
Cow position:
               
chr11:8245300-8245381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
82
               

               
Alignm identity:
               
73
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
93-385
               

               
Cow position:
               
chr12:21500171-21500452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
40, 16
               

               
Conread position:
               
95-287
               

               
Cow position:
               
chr12:21254591-21254399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-288
               

               
Cow position:
               
chr12:2864-3056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-293
               

               
Cow position:
               
chr12:1402556-1402752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
47, 22
               

               
Conread position:
               
95-293
               

               
Cow position:
               
chr12:3360969-3361168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-293
               

               
Cow position:
               
chr12:27932880-27932683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-293
               

               
Cow position:
               
chr12:32653609-32653808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-293
               

               
Cow position:
               
chr12:43031318-43031121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-294
               

               
Cow position:
               
chr12:2282611-2282809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-294
               

               
Cow position:
               
chr12:5861219-5861416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 22
               

               
Conread position:
               
95-294
               

               
Cow position:
               
chr12:6406583-6406388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
121, 10
               

               
Conread position:
               
95-294
               

               
Cow position:
               
chr12:8678057-8677858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
103, 22
               

               
Conread position:
               
95-294
               

               
Cow position:
               
chr12:14662568-14662370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-294
               

               
Cow position:
               
chr12:42859762-42859564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-323
               

               
Cow position:
               
chr12:28765954-28765727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-324
               

               
Cow position:
               
chr12:21198023-21198256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
40, 10
               

               
Conread position:
               
95-332
               

               
Cow position:
               
chr12:8311246-8311488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 22
               

               
Conread position:
               
95-332
               

               
Cow position:
               
chr12:21941830-21942070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
96-280
               

               
Cow position:
               
chr12:21426760-21426943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
120, 21
               

               
Conread position:
               
97-293
               

               
Cow position:
               
chr12:33986229-33986424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
119, 12
               

               
Conread position:
               
97-294
               

               
Cow position:
               
chr12:22332692-22332887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
119, 20
               

               
Conread position:
               
112-281
               

               
Cow position:
               
chr12:20998052-20997883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
112-293
               

               
Cow position:
               
chr12:251976-251796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
104, 27
               

               
Conread position:
               
112-293
               

               
Cow position:
               
chr12:22205667-22205486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
104, 130
               

               
Conread position:
               
112-293
               

               
Cow position:
               
chr12:25100981-25100799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
112-294
               

               
Cow position:
               
chr12:11098322-11098505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
112-294
               

               
Cow position:
               
chr12:45261703-45261886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
112-371
               

               
Cow position:
               
chr12:23240084-23240348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
104, 79
               

               
Conread position:
               
113-294
               

               
Cow position:
               
chr12:21902020-21902202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
103, 62
               

               
Conread position:
               
113-317
               

               
Cow position:
               
chr12:2838773-2838575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
103, 86
               

               
Conread position:
               
114-293
               

               
Cow position:
               
chr12:37558637-37558820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
115-294
               

               
Cow position:
               
chr12:26946909-26946727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
81, 123
               

               
Conread position:
               
116-547
               

               
Cow position:
               
chr12:15951180-15950759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 138
               

               
Conread position:
               
130-357
               

               
Cow position:
               
chr12:18501132-18501351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
8, 47
               

               
Conread position:
               
176-294
               

               
Cow position:
               
chr12:31544922-31545041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
185-293
               

               
Cow position:
               
chr12:4157530-4157639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
208-361
               

               
Cow position:
               
chr12:48405430-48405577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
383-574
               

               
Cow position:
               
chr12:48405679-48405862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
436-724
               

               
Cow position:
               
chr12:348475-348763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
64, 9
               

               
Conread position:
               
462-727
               

               
Cow position:
               
chr12:21500560-21500820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
192, 51
               

               
Conread position:
               
469-704
               

               
Cow position:
               
chr12:1138216-1138449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
20, 98
               

               
Conread position:
               
486-723
               

               
Cow position:
               
chr12:1869403-1869647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
588-727
               

               
Cow position:
               
chr12:44005173-44005034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
626-732
               

               
Cow position:
               
chr12:11098503-11098607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
632-727
               

               
Cow position:
               
chr12:14662369-14662273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
97
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
632-727
               

               
Cow position:
               
chr12:42859563-42859469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
97
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
13, 23
               

               
Conread position:
               
92-293
               

               
Cow position:
               
chr13:31734240-31734042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
124, 30
               

               
Conread position:
               
95-213
               

               
Cow position:
               
chr13:30237962-30238078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
95-264
               

               
Cow position:
               
chr13:47230143-47229975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
121, 10
               

               
Conread position:
               
95-269
               

               
Cow position:
               
chr13:6668279-6668106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-273
               

               
Cow position:
               
chr13:2908606-2908428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 22
               

               
Conread position:
               
95-280
               

               
Cow position:
               
chr13:1593311-1593127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-280
               

               
Cow position:
               
chr13:9044345-9044528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
121, 21
               

               
Conread position:
               
95-280
               

               
Cow position:
               
chr13:32986213-32986029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
34, 22
               

               
Conread position:
               
95-288
               

               
Cow position:
               
chr13:31832444-31832633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-288
               

               
Cow position:
               
chr13:56730441-56730251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-293
               

               
Cow position:
               
chr13:4483641-4483835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
121, 18
               

               
Conread position:
               
95-293
               

               
Cow position:
               
chr13:13324593-13324792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
95-293
               

               
Cow position:
               
chr13:17308319-17308518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
121, 13
               

               
Conread position:
               
95-293
               

               
Cow position:
               
chr13:21840350-21840151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
119, 22
               

               
Conread position:
               
95-293
               

               
Cow position:
               
chr13:35030400-35030592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
34, 22
               

               
Conread position:
               
95-293
               

               
Cow position:
               
chr13:60466181-60466380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
121, 14
               

               
Conread position:
               
95-293
               

               
Cow position:
               
chr13:62327740-62327543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 22
               
95-294UCSC Genome Browser

               
Conread position:
               

               

               
Cow position:
               
chr13:15924540-15924342 (view  custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
121, 22
               
95-294UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr13:30657130-30656935 (view  custom track)

               
               
               
Alignm length:
200

               
               
               
Alignm identity:
162

               
               
               
Alignm E-value:
0

               
               
               
Alignm gaps (pig, cow):
22, 0
95-294UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr13:33824887-33824693 (view  custom track)

               
               
               
Alignm length:
201

               
               
               
Alignm identity:
162

               
               
               
Alignm E-value:
5.04467e-44

               
               
               
Alignm gaps (pig, cow):
121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr13:35757085-35757283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-295
               
               
               Cow position:chr13:15520671-15520472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-316
               
               
               Cow position:chr13:34911534-34911313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 15

               
               
               Conread position:95-324
               
               
               Cow position:chr13:34186841-34186615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):215, 22

               
               
               Conread position:95-332
               
               
               Cow position:chr13:34142815-34142575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 22

               
               
               Conread position:95-339
               
               
               Cow position:chr13:4178807-4178561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):122, 14

               
               
               Conread position:95-354
               
               
               Cow position:chr13:34936991-34937248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 22

               
               
               Conread position:96-293
               
               
               Cow position:chr13:2388973-2388775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:161
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):120, 21

               
               
               Conread position:96-293
               
               
               Cow position:chr13:34325829-34325634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:159
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):120, 21

               
               
               Conread position:96-294
               
               
               Cow position:chr13:34693008-34693207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:165
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 21

               
               
               Conread position:96-588
               
               
               Cow position:chr13:54284417-54284904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 23

               
               
               Conread position:97-293
               
               
               Cow position:chr13:32737976-32737781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):124, 12

               
               
               Conread position:97-316
               
               
               Cow position:chr13:4872923-4873143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:174
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):119, 12

               
               
               Conread position:101-319
               
               
               Cow position:chr13:46732376-46732163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):115, 15

               
               
               Conread position:112-243
               
               
               Cow position:chr13:23003657-23003527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:104
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:112-293
               
               
               Cow position:chr13:32544918-32545100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-294
               
               
               Cow position:chr13:3277013-3277196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:157
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-294
               
               
               Cow position:chr13:4940947-4941130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-294
               
               
               Cow position:chr13:31612476-31612294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):55, 90

               
               
               Conread position:112-294
               
               
               Cow position:chr13:34042510-34042327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):104, 169

               
               
               Conread position:112-727
               
               
               Cow position:chr13:20542514-20541898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 28

               
               
               Conread position:114-293
               
               
               Cow position:chr13:3058250-3058067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:114-293
               
               
               Cow position:chr13:49973545-49973727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:149
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-293
               
               
               Cow position:chr13:50109323-50109505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:148
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:117-371
               
               
               Cow position:chr13:34767422-34767181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):99, 117

               
               
               Conread position:119-294
               
               
               Cow position:chr13:34868606-34868784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):22, 92

               
               
               Conread position:121-371
               
               
               Cow position:chr13:34111163-34111401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):192, 69

               
               
               Conread position:122-333
               
               
               Cow position:chr13:3567663-3567878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:172
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):94, 200

               
               
               Conread position:128-280
               
               
               Cow position:chr13:676751-676904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:129-279
               
               
               Cow position:chr13:3654449-3654299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):87, 35

               
               
               Conread position:150-294
               
               
               Cow position:chr13:22765921-22766065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):66, 23

               
               
               Conread position:160-294
               
               
               Cow position:chr13:11799855-11799719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:160-696
               
               
               Cow position:chr13:15451649-15451132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 114

               
               
               Conread position:163-294
               
               
               Cow position:chr13:33927675-33927545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):55, 12

               
               
               Conread position:252-732
               
               
               Cow position:chr13:26843793-26844235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):237, 38

               
               
               Conread position:376-689
               
               
               Cow position:chr13:34111482-34111806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):13, 192

               
               
               Conread position:383-580
               
               
               Cow position:chr13:11064605-11064409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):177, 124

               
               
               Conread position:383-726
               
               
               Cow position:chr13:34767069-34766734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 50

               
               
               Conread position:390-732
               
               
               Cow position:chr13:43983277-43982938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 118

               
               
               Conread position:442-718
               
               
               Cow position:chr13:34937348-34937617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 21

               
               
               Conread position:443-717
               
               
               Cow position:chr13:11763961-11763688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):178, 57

               
               
               Conread position:449-732
               
               
               Cow position:chr13:60700987-60700703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):165, 34

               
               
               Conread position:450-719
               
               
               Cow position:chr13:29202501-29202229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):55, 48

               
               
               Conread position:474-709
               
               
               Cow position:chr13:34186618-34186394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:497-719
               
               
               Cow position:chr13:48357478-48357695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):17, 72

               
               
               Conread position:497-726
               
               
               Cow position:chr13:46731809-46731585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):172, 18

               
               
               Conread position:571-732
               
               
               Cow position:chr13:11064185-11064024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:626-727
               
               
               Cow position:chr13:22766063-22766163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:85
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr13:15924344-15924240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr13:23003269-23003165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr13:35757281-35757385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:632-727
               
               
               Cow position:chr13:30303319-30303415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:82
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:632-732
               
               
               Cow position:chr13:30238289-30238389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:88
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:632-732
               
               
               Cow position:chr13:34042326-34042225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:85
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:79-287
               
               
               Cow position:chr14:13621445-13621235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):11, 38

               
               
               Conread position:88-294
               
               
               Cow position:chr14:7830827-7830622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 29

               
               
               Conread position:89-385
               
               
               Cow position:chr14:44580671-44580956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):127, 12

               
               
               Conread position:92-293
               
               
               Cow position:chr14:17491739-17491537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:162
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):124, 25

               
               
               Conread position:93-658
               
               
               Cow position:chr14:46084341-46084894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 24

               
               
               Conread position:95-248
               
               
               Cow position:chr14:48824303-48824455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):121, 12

               
               
               Conread position:95-274
               
               
               Cow position:chr14:13480014-13479836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-274
               
               
               Cow position:chr14:22031967-22031789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-274
               
               
               Cow position:chr14:44287530-44287352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-280
               
               
               Cow position:chr14:9045286-9045470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:149
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):118, 22

               
               
               Conread position:95-280
               
               
               Cow position:chr14:13864363-13864178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):49, 10

               
               
               Conread position:95-280
               
               
               Cow position:chr14:45712266-45712087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:151
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:95-288
               
               
               Cow position:chr14:36967975-36968167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:161
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 24

               
               
               Conread position:95-288
               
               
               Cow position:chr14:45850942-45851134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:163
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-288
               
               
               Cow position:chr14:48405968-48405777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):121, 15

               
               
               Conread position:95-292
               
               
               Cow position:chr14:44130635-44130829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-292
               
               
               Cow position:chr14:44855706-44855510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:166
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-292
               
               
               Cow position:chr14:45767722-45767919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:167
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 24

               
               
               Conread position:95-293
               
               
               Cow position:chr14:5528782-5528979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr14:16919970-16919773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:158
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr14:17001334-17001142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr14:19328548-19328351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr14:23257079-23257278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:159
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):121, 20

               
               
               Conread position:95-293
               
               
               Cow position:chr14:30585231-30585033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:163
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr14:50134790-50134991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):65, 14

               
               
               Conread position:95-294
               
               
               Cow position:chr14:5201361-5201163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:164
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 14

               
               
               Conread position:95-294
               
               
               Cow position:chr14:7472094-7472286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr14:11154445-11154248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:159
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):121, 14

               
               
               Conread position:95-294
               
               
               Cow position:chr14:13660268-13660068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr14:13778675-13778873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr14:17685116-17685314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):119, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr14:19619940-19620138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:156
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr14:20782176-20782374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:156
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr14:22242600-22242799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:162
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):10, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr14:23690508-23690311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:164
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr14:30596664-30596466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):78, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr14:37223622-37223819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:155
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:95-294
               
               
               Cow position:chr14:45205798-45205995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):121, 25

               
               
               Conread position:95-294
               
               
               Cow position:chr14:47624280-47624471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:95-301
               
               
               Cow position:chr14:28994134-28993929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):121, 17

               
               
               Conread position:95-309
               
               
               Cow position:chr14:46464793-46465007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 12

               
               
               Conread position:95-316
               
               
               Cow position:chr14:44226119-44226337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:168
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):122, 22

               
               
               Conread position:95-316
               
               
               Cow position:chr14:45160818-45161039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):118, 22

               
               
               Conread position:95-316
               
               
               Cow position:chr14:50110286-50110508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-317
               
               
               Cow position:chr14:15276860-15276639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-327
               
               
               Cow position:chr14:38532573-38532339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):121, 28

               
               
               Conread position:95-332
               
               
               Cow position:chr14:13302750-13302984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):119, 22

               
               
               Conread position:95-332
               
               
               Cow position:chr14:44551602-44551841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-333
               
               
               Cow position:chr14:45833870-45834112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 232

               
               
               Conread position:95-362
               
               
               Cow position:chr14:43034167-43033906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):218, 20

               
               
               Conread position:95-364
               
               
               Cow position:chr14:35928900-35929162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):121, 21

               
               
               Conread position:95-366
               
               
               Cow position:chr14:27992588-27992317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):205, 22

               
               
               Conread position:95-366
               
               
               Cow position:chr14:34775249-34775524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):121, 21

               
               
               Conread position:95-366
               
               
               Cow position:chr14:41407542-41407806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-371
               
               
               Cow position:chr14:37414166-37413902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-385
               
               
               Cow position:chr14:12608902-12609189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 22

               
               
               Conread position:95-385
               
               
               Cow position:chr14:22019113-22019398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 21

               
               
               Conread position:95-385
               
               
               Cow position:chr14:33675531-33675821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 22

               
               
               Conread position:95-727
               
               
               Cow position:chr14:35387429-35386798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:646
               
               
               Alignm identity:477
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 24

               
               
               Conread position:96-290
               
               
               Cow position:chr14:45771056-45770865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:170
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 21

               
               
               Conread position:97-293
               
               
               Cow position:chr14:23901078-23900883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):119, 12

               
               
               Conread position:97-294
               
               
               Cow position:chr14:42152045-42152242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:166
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 20

               
               
               Conread position:97-698
               
               
               Cow position:chr14:40339405-40339985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:461
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 12

               
               
               Conread position:104-337
               
               
               Cow position:chr14:44377155-44377408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):9, 251

               
               
               Conread position:109-512
               
               
               Cow position:chr14:45303632-45303233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 226

               
               
               Conread position:112-262
               
               
               Cow position:chr14:5511557-5511708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-280
               
               
               Cow position:chr14:16273560-16273392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):104, 114

               
               
               Conread position:112-280
               
               
               Cow position:chr14:45029388-45029220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):104, 132

               
               
               Conread position:112-293
               
               
               Cow position:chr14:41085047-41084864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:155
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):104, 34

               
               
               Conread position:112-294
               
               
               Cow position:chr14:12743333-12743150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-294
               
               
               Cow position:chr14:13272987-13273165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):104, 46

               
               
               Conread position:112-294
               
               
               Cow position:chr14:44685778-44685961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-294
               
               
               Cow position:chr14:45565064-45565246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):104, 11

               
               
               Conread position:112-366
               
               
               Cow position:chr14:38146319-38146566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):104, 37

               
               
               Conread position:113-294
               
               
               Cow position:chr14:45917152-45917336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:149
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:114-293
               
               
               Cow position:chr14:750307-750489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-293
               
               
               Cow position:chr14:2284076-2284258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-293
               
               
               Cow position:chr14:29048166-29047984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:149
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-293
               
               
               Cow position:chr14:45672307-45672126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):102, 60

               
               
               Conread position:114-294
               
               
               Cow position:chr14:44422291-44422472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:156
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-340
               
               
               Cow position:chr14:33394039-33393808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 220

               
               
               Conread position:127-324
               
               
               Cow position:chr14:40169953-40169759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):10, 37

               
               
               Conread position:149-372
               
               
               Cow position:chr14:44777213-44776999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:162-361
               
               
               Cow position:chr14:44257621-44257423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):53, 86

               
               
               Conread position:166-280
               
               
               Cow position:chr14:43557225-43557340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:99
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:167-281
               
               
               Cow position:chr14:45080836-45080950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:364-731
               
               
               Cow position:chr14:44377466-44377827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 127

               
               
               Conread position:383-662
               
               
               Cow position:chr14:17764784-17764519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:205
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):125, 36

               
               
               Conread position:383-681
               
               
               Cow position:chr14:12609279-12609572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:215
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):40, 18

               
               
               Conread position:383-690
               
               
               Cow position:chr14:33675909-33676217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):65, 107

               
               
               Conread position:383-722
               
               
               Cow position:chr14:46518754-46519109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):18, 66

               
               
               Conread position:383-728
               
               
               Cow position:chr14:38146669-38147012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:249
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):129, 18

               
               
               Conread position:422-722
               
               
               Cow position:chr14:44776358-44776043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):80, 34

               
               
               Conread position:443-722
               
               
               Cow position:chr14:34775956-34776232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):197, 55

               
               
               Conread position:443-732
               
               
               Cow position:chr14:33487678-33487961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):37, 44

               
               
               Conread position:469-732
               
               
               Cow position:chr14:37457651-37457390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:199
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):46, 14

               
               
               Conread position:479-727
               
               
               Cow position:chr14:45303180-45302937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:185
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:482-722
               
               
               Cow position:chr14:41489877-41489637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:483-722
               
               
               Cow position:chr14:44581135-44581376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):29, 99

               
               
               Conread position:484-732
               
               
               Cow position:chr14:37413673-37413420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):29, 92

               
               
               Conread position:486-727
               
               
               Cow position:chr14:44257205-44256965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):127, 31

               
               
               Conread position:495-727
               
               
               Cow position:chr14:41408661-41408900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):9, 64

               
               
               Conread position:507-696
               
               
               Cow position:chr14:48824978-48825165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):25, 33

               
               
               Conread position:510-732
               
               
               Cow position:chr14:33341932-33342151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):107, 56

               
               
               Conread position:511-732
               
               
               Cow position:chr14:14308765-14308537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):51, 80

               
               
               Conread position:546-732
               
               
               Cow position:chr14:13302852-13303041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):16, 34

               
               
               Conread position:614-723
               
               
               Cow position:chr14:46464982-46465088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:92
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:618-727
               
               
               Cow position:chr14:16273390-16273281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:89
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:619-732
               
               
               Cow position:chr14:17760991-17760880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:626-720
               
               
               Cow position:chr14:17685312-17685404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:82
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:626-727
               
               
               Cow position:chr14:13273163-13273262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:85
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr14:11154250-11154146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr14:28993938-28993834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:90
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr14:37223817-37223921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:90
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr14:48254389-48254283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:91
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):64, 15

               
               
               Conread position:630-727
               
               
               Cow position:chr14:19620138-19620235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:82
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:630-732
               
               
               Cow position:chr14:5528982-5529082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:86
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:630-732
               
               
               Cow position:chr14:16919770-16919670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:86
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:632-732
               
               
               Cow position:chr14:13864163-13864062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:84
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:632-732
               
               
               Cow position:chr14:22031506-22031402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:88
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:92-280
               
               
               Cow position:chr15:4678196-4678382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:153
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):124, 25

               
               
               Conread position:95-228
               
               
               Cow position:chr15:22920847-22920979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):121, 19

               
               
               Conread position:95-248
               
               
               Cow position:chr15:38979641-38979792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:95-262
               
               
               Cow position:chr15:42936435-42936601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-266
               
               
               Cow position:chr15:35735177-35735345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):121, 19

               
               
               Conread position:95-274
               
               
               Cow position:chr15:17039532-17039358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):121, 10

               
               
               Conread position:95-275
               
               
               Cow position:chr15:2924611-2924786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):119, 10

               
               
               Conread position:95-279
               
               
               Cow position:chr15:1763814-1763994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:95-280
               
               
               Cow position:chr15:1772220-1772404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-280
               
               
               Cow position:chr15:4812042-4812224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):118, 10

               
               
               Conread position:95-280
               
               
               Cow position:chr15:7260349-7260531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):69, 22

               
               
               Conread position:95-280
               
               
               Cow position:chr15:14582896-14582714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):121, 14

               
               
               Conread position:95-280
               
               
               Cow position:chr15:20749137-20749321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:149
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):121, 21

               
               
               Conread position:95-280
               
               
               Cow position:chr15:50124217-50124036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-280
               
               
               Cow position:chr15:50146800-50146984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:149
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):121, 21

               
               
               Conread position:95-281
               
               
               Cow position:chr15:3037792-3037605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:156
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):103, 17

               
               
               Conread position:95-287
               
               
               Cow position:chr15:4681954-4682146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:158
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):121, 19

               
               
               Conread position:95-293
               
               
               Cow position:chr15:56209-56408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):121, 14

               
               
               Conread position:95-293
               
               
               Cow position:chr15:1519428-1519229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr15:1781976-1782175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:159
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):121, 21

               
               
               Conread position:95-293
               
               
               Cow position:chr15:4169977-4169781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:169
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 15

               
               
               Conread position:95-293
               
               
               Cow position:chr15:4196185-4196384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):121, 10

               
               
               Conread position:95-293
               
               
               Cow position:chr15:4384989-4385186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):121, 21

               
               
               Conread position:95-293
               
               
               Cow position:chr15:4671150-4671347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:160
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):120, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr15:6554133-6553938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:95-293
               
               
               Cow position:chr15:7836965-7837162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:156
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):121, 21

               
               
               Conread position:95-293
               
               
               Cow position:chr15:17271675-17271478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:163
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 9

               
               
               Conread position:95-293
               
               
               Cow position:chr15:25789247-25789051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:164
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr15:28490419-28490220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:157
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr15:690512-690709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:160
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):121, 19

               
               
               Conread position:95-294
               
               
               Cow position:chr15:2076369-2076567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):121, 21

               
               
               Conread position:95-294
               
               
               Cow position:chr15:4649548-4649746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:156
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr15:4733581-4733778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr15:4764927-4765124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):120, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr15:6156232-6156034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:158
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr15:7522771-7522574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:167
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:95-294
               
               
               Cow position:chr15:7544602-7544801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):46, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr15:7894508-7894312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:162
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):121, 25

               
               
               Conread position:95-294
               
               
               Cow position:chr15:10787407-10787209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:170
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 19

               
               
               Conread position:95-294
               
               
               Cow position:chr15:10888331-10888524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr15:15347398-15347200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr15:18576435-18576633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:159
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr15:19738332-19738134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr15:21666025-21665827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):121, 14

               
               
               Conread position:95-294
               
               
               Cow position:chr15:21961229-21961427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:166
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 21

               
               
               Conread position:95-294
               
               
               Cow position:chr15:23157110-23156923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):71, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr15:25186222-25186043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:95-294
               
               
               Cow position:chr15:35748015-35748213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr15:36648629-36648827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:166
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 21

               
               
               Conread position:95-306
               
               
               Cow position:chr15:17292160-17292369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 14

               
               
               Conread position:95-310
               
               
               Cow position:chr15:6078462-6078674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-314
               
               
               Cow position:chr15:41365902-41366115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):208, 22

               
               
               Conread position:95-324
               
               
               Cow position:chr15:4921865-4922102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):68, 24

               
               
               Conread position:95-324
               
               
               Cow position:chr15:32693264-32693491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):72, 22

               
               
               Conread position:95-327
               
               
               Cow position:chr15:24294813-24295040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:176
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-363
               
               
               Cow position:chr15:17787445-17787179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-371
               
               
               Cow position:chr15:15265933-15265664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):106, 19

               
               
               Conread position:95-371
               
               
               Cow position:chr15:40105186-40105458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 10

               
               
               Conread position:95-385
               
               
               Cow position:chr15:686249-686530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-385
               
               
               Cow position:chr15:8408275-8408564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):42, 22

               
               
               Conread position:95-695
               
               
               Cow position:chr15:35648509-35647922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 22

               
               
               Conread position:95-732
               
               
               Cow position:chr15:36642336-36642960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:647
               
               
               Alignm identity:521
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 10

               
               
               Conread position:96-293
               
               
               Cow position:chr15:44069645-44069841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:156
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):120, 13

               
               
               Conread position:96-324
               
               
               Cow position:chr15:16542392-16542617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:177
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):120, 15

               
               
               Conread position:96-351
               
               
               Cow position:chr15:51672071-51672327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 21

               
               
               Conread position:97-293
               
               
               Cow position:chr15:2647932-2647735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):119, 12

               
               
               Conread position:97-293
               
               
               Cow position:chr15:4143093-4142899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):119, 12

               
               
               Conread position:97-294
               
               
               Cow position:chr15:6593220-6593025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:162
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 20

               
               
               Conread position:98-365
               
               
               Cow position:chr15:24715949-24716208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:204
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):140, 19

               
               
               Conread position:101-350
               
               
               Cow position:chr15:22151930-22152181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):41, 13

               
               
               Conread position:107-324
               
               
               Cow position:chr15:7934073-7934282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):110, 32

               
               
               Conread position:108-366
               
               
               Cow position:chr15:9429261-9429531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:109-293
               
               
               Cow position:chr15:36970658-36970843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:111-281
               
               
               Cow position:chr15:4795413-4795583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:144
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):6, 65

               
               
               Conread position:112-243
               
               
               Cow position:chr15:3261678-3261547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:112-244
               
               
               Cow position:chr15:525113-524980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:107
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-272
               
               
               Cow position:chr15:12421429-12421268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-274
               
               
               Cow position:chr15:18333091-18332929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):104, 54

               
               
               Conread position:112-280
               
               
               Cow position:chr15:32494649-32494481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):112, 86

               
               
               Conread position:112-287
               
               
               Cow position:chr15:37392233-37392405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:149
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:112-288
               
               
               Cow position:chr15:6472181-6472003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:145
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:112-288
               
               
               Cow position:chr15:53338765-53338937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:146
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):104, 46

               
               
               Conread position:112-292
               
               
               Cow position:chr15:6370042-6369861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:156
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 60

               
               
               Conread position:112-293
               
               
               Cow position:chr15:2011819-2012002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:151
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):104, 72

               
               
               Conread position:112-293
               
               
               Cow position:chr15:4630179-4630001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:112-294
               
               
               Cow position:chr15:4961367-4961547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):30, 79

               
               
               Conread position:112-294
               
               
               Cow position:chr15:6650253-6650080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):104, 58

               
               
               Conread position:112-294
               
               
               Cow position:chr15:7921904-7921723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:152
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:112-294
               
               
               Cow position:chr15:8750163-8750345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):104, 96

               
               
               Conread position:112-294
               
               
               Cow position:chr15:31358623-31358805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):104, 27

               
               
               Conread position:112-294
               
               
               Cow position:chr15:35753861-35753679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):104, 86

               
               
               Conread position:112-294
               
               
               Cow position:chr15:42490940-42491123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-294
               
               
               Cow position:chr15:51216325-51216508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-314
               
               
               Cow position:chr15:1663103-1663304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):32, 181

               
               
               Conread position:112-342
               
               
               Cow position:chr15:7234037-7234269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:175
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):29, 191

               
               
               Conread position:112-364
               
               
               Cow position:chr15:11624647-11624893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):24, 86

               
               
               Conread position:112-371
               
               
               Cow position:chr15:1237056-1237314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 27

               
               
               Conread position:112-695
               
               
               Cow position:chr15:369945-369369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 102

               
               
               Conread position:112-698
               
               
               Cow position:chr15:24793784-24794348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 84

               
               
               Conread position:113-294
               
               
               Cow position:chr15:8099225-8099407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):103, 26

               
               
               Conread position:113-331
               
               
               Cow position:chr15:8000494-8000269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:178
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):103, 91

               
               
               Conread position:113-366
               
               
               Cow position:chr15:37407243-37406996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):107, 26

               
               
               Conread position:113-369
               
               
               Cow position:chr15:36626933-36626676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:114-280
               
               
               Cow position:chr15:3010112-3009945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-280
               
               
               Cow position:chr15:3888619-3888785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):107, 33

               
               
               Conread position:114-280
               
               
               Cow position:chr15:17080462-17080296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):102, 37

               
               
               Conread position:114-293
               
               
               Cow position:chr15:444348-444529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:149
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):142, 136

               
               
               Conread position:114-293
               
               
               Cow position:chr15:2589727-2589550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):102, 46

               
               
               Conread position:114-293
               
               
               Cow position:chr15:2592088-2591911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):102, 46

               
               
               Conread position:114-293
               
               
               Cow position:chr15:18268248-18268066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:147
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-293
               
               
               Cow position:chr15:42320682-42320500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:116-361
               
               
               Cow position:chr15:12453157-12453396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):100, 26

               
               
               Conread position:116-366
               
               
               Cow position:chr15:2007278-2007526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):100, 82

               
               
               Conread position:116-385
               
               
               Cow position:chr15:12614809-12615072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:197
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):100, 23

               
               
               Conread position:119-251
               
               
               Cow position:chr15:51800468-51800601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:119-279
               
               
               Cow position:chr15:29009583-29009744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:120-294
               
               
               Cow position:chr15:6277516-6277340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:120-382
               
               
               Cow position:chr15:324685-324943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 32

               
               
               Conread position:121-293
               
               
               Cow position:chr15:1834715-1834540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:128-324
               
               
               Cow position:chr15:316113-315908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):53, 15

               
               
               Conread position:134-293
               
               
               Cow position:chr15:32710452-32710614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:134-294
               
               
               Cow position:chr15:21623457-21623615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):82, 33

               
               
               Conread position:135-366
               
               
               Cow position:chr15:21449068-21449300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 80

               
               
               Conread position:143-293
               
               
               Cow position:chr15:1882737-1882587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):73, 65

               
               
               Conread position:148-294
               
               
               Cow position:chr15:5068623-5068770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:128
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:168-333
               
               
               Cow position:chr15:5544585-5544756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:180-342
               
               
               Cow position:chr15:328231-328396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:209-488
               
               
               Cow position:chr15:32679741-32679473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:202
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):102, 207

               
               
               Conread position:242-349
               
               
               Cow position:chr15:51801566-51801673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:89
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:301-722
               
               
               Cow position:chr15:11298801-11298387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:280
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):37, 44

               
               
               Conread position:383-722
               
               
               Cow position:chr15:12615162-12615483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):32, 96

               
               
               Conread position:383-727
               
               
               Cow position:chr15:9429629-9429957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 29

               
               
               Conread position:393-717
               
               
               Cow position:chr15:686625-686918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:230
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:419-692
               
               
               Cow position:chr15:23264785-23265051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):92, 23

               
               
               Conread position:449-731
               
               
               Cow position:chr15:6622821-6623114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):62, 7

               
               
               Conread position:449-732
               
               
               Cow position:chr15:20357156-20356880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):58, 66

               
               
               Conread position:453-714
               
               
               Cow position:chr15:24716621-24716873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):14, 54

               
               
               Conread position:469-717
               
               
               Cow position:chr15:8408725-8408977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):34, 12

               
               
               Conread position:482-726
               
               
               Cow position:chr15:1664266-1664498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:491-732
               
               
               Cow position:chr15:16507770-16508018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:185
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):54, 170

               
               
               Conread position:503-722
               
               
               Cow position:chr15:21449498-21449710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):5, 42

               
               
               Conread position:512-719
               
               
               Cow position:chr15:40105674-40105879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):126, 14

               
               
               Conread position:522-716
               
               
               Cow position:chr15:35735381-35735584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):20, 49

               
               
               Conread position:546-726
               
               
               Cow position:chr15:51714792-51714972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):131, 95

               
               
               Conread position:606-732
               
               
               Cow position:chr15:8750324-8750447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:610-732
               
               
               Cow position:chr15:4961545-4961667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):36, 22

               
               
               Conread position:626-727
               
               
               Cow position:chr15:42936631-42936730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:85
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr15:15347202-15347098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr15:18576631-18576735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:90
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr15:19738136-19738032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr15:21665829-21665725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:627-732
               
               
               Cow position:chr15:24295012-24295115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:89
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):18, 31

               
               
               Conread position:630-732
               
               
               Cow position:chr15:18332909-18332807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:84
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:631-727
               
               
               Cow position:chr15:17271477-17271379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:85
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:632-728
               
               
               Cow position:chr15:4682151-4682247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:85
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):15, 68

               
               
               Conread position:632-732
               
               
               Cow position:chr15:6156033-6155932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:87
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:632-732
               
               
               Cow position:chr15:6553936-6553835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:89
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:632-732
               
               
               Cow position:chr15:51216509-51216609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:86
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):13, 33

               
               
               Conread position:637-732
               
               
               Cow position:chr15:8099414-8099509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:96
               
               
               Alignm identity:82
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:92-293
               
               
               Cow position:chr16:25341336-25341536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:159
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):124, 25

               
               
               Conread position:92-371
               
               
               Cow position:chr16:44966543-44966806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:94-332
               
               
               Cow position:chr16:30047866-30048103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):122, 11

               
               
               Conread position:94-410
               
               
               Cow position:chr16:49257210-49256896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 23

               
               
               Conread position:95-262
               
               
               Cow position:chr16:10437617-10437783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):121, 21

               
               
               Conread position:95-273
               
               
               Cow position:chr16:27734429-27734251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):47, 14

               
               
               Conread position:95-274
               
               
               Cow position:chr16:9777457-9777637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):47, 22

               
               
               Conread position:95-280
               
               
               Cow position:chr16:2239359-2239182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):47, 22

               
               
               Conread position:95-280
               
               
               Cow position:chr16:25440992-25441182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):67, 10

               
               
               Conread position:95-280
               
               
               Cow position:chr16:25458097-25457907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):75, 10

               
               
               Conread position:95-281
               
               
               Cow position:chr16:56551500-56551679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-287
               
               
               Cow position:chr16:36282775-36282963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:162
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):19, 45

               
               
               Conread position:95-288
               
               
               Cow position:chr16:11052536-11052726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:158
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):123, 22

               
               
               Conread position:95-288
               
               
               Cow position:chr16:51685811-51686001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):118, 22

               
               
               Conread position:95-292
               
               
               Cow position:chr16:39821006-39821201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr16:23253133-23252936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:158
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr16:28170988-28170790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr16:407660-407459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):47, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr16:1568080-1567882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:160
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr16:2411595-2411397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:158
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr16:2483769-2483570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):41, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr16:6549150-6548952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:161
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr16:7905993-7906191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:167
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 21

               
               
               Conread position:95-294
               
               
               Cow position:chr16:8816730-8816532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:156
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):120, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr16:10204056-10203858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:160
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):121, 14

               
               
               Conread position:95-294
               
               
               Cow position:chr16:14666455-14666257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:161
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr16:19713512-19713317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:167
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 16

               
               
               Conread position:95-294
               
               
               Cow position:chr16:23982685-23982882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:159
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):121, 21

               
               
               Conread position:95-294
               
               
               Cow position:chr16:25084995-25085193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:159
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):119, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr16:29046396-29046594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-301
               
               
               Cow position:chr16:836403-836608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:162
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):119, 22

               
               
               Conread position:95-316
               
               
               Cow position:chr16:31592530-31592311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):71, 22

               
               
               Conread position:95-371
               
               
               Cow position:chr16:31375906-31375633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-371
               
               
               Cow position:chr16:52815113-52814842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 22

               
               
               Conread position:95-727
               
               
               Cow position:chr16:42740048-42739428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:645
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 10

               
               
               Conread position:95-727
               
               
               Cow position:chr16:49235776-49235164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:637
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 16

               
               
               Conread position:96-227
               
               
               Cow position:chr16:36232235-36232110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):120, 16

               
               
               Conread position:96-274
               
               
               Cow position:chr16:15566125-15566296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):120, 21

               
               
               Conread position:96-294
               
               
               Cow position:chr16:20254936-20254739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 16

               
               
               Conread position:96-342
               
               
               Cow position:chr16:34529696-34529943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:185
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):120, 21

               
               
               Conread position:96-385
               
               
               Cow position:chr16:335665-335947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 21

               
               
               Conread position:96-730
               
               
               Cow position:chr16:25156847-25156204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:653
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 21

               
               
               Conread position:97-280
               
               
               Cow position:chr16:25188019-25188200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):119, 12

               
               
               Conread position:97-292
               
               
               Cow position:chr16:32116-32308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:155
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):119, 20

               
               
               Conread position:97-293
               
               
               Cow position:chr16:53045730-53045925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):119, 12

               
               
               Conread position:112-262
               
               
               Cow position:chr16:40296789-40296638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-279
               
               
               Cow position:chr16:36361973-36361805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:146
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 23

               
               
               Conread position:112-280
               
               
               Cow position:chr16:43897878-43897713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):104, 20

               
               
               Conread position:112-294
               
               
               Cow position:chr16:5483712-5483895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):104, 161

               
               
               Conread position:112-294
               
               
               Cow position:chr16:10808542-10808722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:155
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 26

               
               
               Conread position:112-294
               
               
               Cow position:chr16:12538535-12538353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):104, 86

               
               
               Conread position:112-294
               
               
               Cow position:chr16:15184192-15184375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:112-294
               
               
               Cow position:chr16:26663137-26663321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:148
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:112-308
               
               
               Cow position:chr16:23670238-23670048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):102, 77

               
               
               Conread position:112-351
               
               
               Cow position:chr16:18499960-18499724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:112-385
               
               
               Cow position:chr16:9929929-9930197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 118

               
               
               Conread position:112-732
               
               
               Cow position:chr16:29033106-29033721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 27

               
               
               Conread position:114-276
               
               
               Cow position:chr16:5918874-5919037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-293
               
               
               Cow position:chr16:5661241-5661423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:150
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-293
               
               
               Cow position:chr16:31832022-31832205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:114-294
               
               
               Cow position:chr16:15492099-15492281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:120-251
               
               
               Cow position:chr16:42050990-42050858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:120-294
               
               
               Cow position:chr16:2727888-2727716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:120-389
               
               
               Cow position:chr16:48626631-48626890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):96, 86

               
               
               Conread position:121-303
               
               
               Cow position:chr16:25153128-25153304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):97, 34

               
               
               Conread position:129-280
               
               
               Cow position:chr16:28471695-28471544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):87, 145

               
               
               Conread position:139-330
               
               
               Cow position:chr16:6943048-6943248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:140-385
               
               
               Cow position:chr16:32935592-32935832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 87

               
               
               Conread position:163-273
               
               
               Cow position:chr16:4302888-4302777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:93
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:167-288
               
               
               Cow position:chr16:29675935-29675813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:167-426
               
               
               Cow position:chr16:16273390-16273132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 64

               
               
               Conread position:177-727
               
               
               Cow position:chr16:25257058-25257605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 148

               
               
               Conread position:197-388
               
               
               Cow position:chr16:5889392-5889582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):19, 121

               
               
               Conread position:209-413
               
               
               Cow position:chr16:23807454-23807660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):7, 86

               
               
               Conread position:255-523
               
               
               Cow position:chr16:42050592-42050345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:204
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:360-518
               
               
               Cow position:chr16:49234836-49234679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):148, 123

               
               
               Conread position:383-673
               
               
               Cow position:chr16:18499381-18499094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 108

               
               
               Conread position:383-732
               
               
               Cow position:chr16:18764274-18763947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:250
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):246, 34

               
               
               Conread position:387-591
               
               
               Cow position:chr16:30304934-30305135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:397-713
               
               
               Cow position:chr16:23807778-23808075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):61, 79

               
               
               Conread position:415-709
               
               
               Cow position:chr16:49256764-49256472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 78

               
               
               Conread position:415-729
               
               
               Cow position:chr16:5889890-5890188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 61

               
               
               Conread position:416-727
               
               
               Cow position:chr16:16272240-16271928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:221
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):95, 76

               
               
               Conread position:479-727
               
               
               Cow position:chr16:37457165-37456910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):36, 80

               
               
               Conread position:483-719
               
               
               Cow position:chr16:54177948-54177720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):19, 27

               
               
               Conread position:610-727
               
               
               Cow position:chr16:25085196-25085310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:624-732
               
               
               Cow position:chr16:15184371-15184477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:626-727
               
               
               Cow position:chr16:10437811-10437910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:86
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr16:2411399-2411294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr16:12538355-12538252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:90
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr16:27734222-27734118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr16:40296608-40296504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr16:43897701-43897597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:632-727
               
               
               Cow position:chr16:1567881-1567785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:82
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:632-732
               
               
               Cow position:chr16:2727715-2727614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:84
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:75-294
               
               
               Cow position:chr17:14041114-14040896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):6, 52

               
               
               Conread position:78-280
               
               
               Cow position:chr17:228375-228172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:162
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):24, 9

               
               
               Conread position:95-251
               
               
               Cow position:chr17:249886-250046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):46, 22

               
               
               Conread position:95-267
               
               
               Cow position:chr17:16859604-16859445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:95-274
               
               
               Cow position:chr17:6259797-6259974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):67, 22

               
               
               Conread position:95-280
               
               
               Cow position:chr17:15435743-15435927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-288
               
               
               Cow position:chr17:18026805-18026613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:161
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-292
               
               
               Cow position:chr17:35592165-35592363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:166
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr17:2248632-2248435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:159
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):121, 24

               
               
               Conread position:95-293
               
               
               Cow position:chr17:2579577-2579764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):121, 12

               
               
               Conread position:95-293
               
               
               Cow position:chr17:8209058-8209257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:160
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr17:14217072-14216875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):46, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr17:15143415-15143216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):119, 20

               
               
               Conread position:95-293
               
               
               Cow position:chr17:15157011-15156813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):119, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr17:23324502-23324303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr17:25737615-25737812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):121, 12

               
               
               Conread position:95-293
               
               
               Cow position:chr17:40804768-40804966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr17:1283753-1283555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 13

               
               
               Conread position:95-294
               
               
               Cow position:chr17:3642884-3642686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr17:11087772-11087574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):119, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr17:15850348-15850547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):119, 19

               
               
               Conread position:95-294
               
               
               Cow position:chr17:18185581-18185385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:158
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):51, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr17:19269414-19269216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr17:22132182-22132378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:161
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr17:23857082-23856884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:162
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 14

               
               
               Conread position:95-294
               
               
               Cow position:chr17:27345751-27345948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:169
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 24

               
               
               Conread position:95-295
               
               
               Cow position:chr17:2287338-2287537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:164
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-325
               
               
               Cow position:chr17:16890071-16890305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:181
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):43, 22

               
               
               Conread position:95-332
               
               
               Cow position:chr17:13856817-13856576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:182
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-384
               
               
               Cow position:chr17:4295302-4295581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:95-384
               
               
               Cow position:chr17:42264455-42264738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:216
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):88, 12

               
               
               Conread position:95-385
               
               
               Cow position:chr17:20401627-20401898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):125, 22

               
               
               Conread position:95-398
               
               
               Cow position:chr17:6002065-6001767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):121, 10

               
               
               Conread position:95-449
               
               
               Cow position:chr17:15371002-15371352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 10

               
               
               Conread position:96-280
               
               
               Cow position:chr17:44852979-44852797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:158
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 21

               
               
               Conread position:96-319
               
               
               Cow position:chr17:152529-152301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:184
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):50, 21

               
               
               Conread position:96-324
               
               
               Cow position:chr17:2173831-2174056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:175
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):120, 9

               
               
               Conread position:97-264
               
               
               Cow position:chr17:2556077-2556242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):119, 12

               
               
               Conread position:97-281
               
               
               Cow position:chr17:20183277-20183097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:152
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):119, 18

               
               
               Conread position:97-293
               
               
               Cow position:chr17:6089207-6089012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):119, 12

               
               
               Conread position:97-293
               
               
               Cow position:chr17:24633908-24634103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):119, 12

               
               
               Conread position:97-294
               
               
               Cow position:chr17:4060056-4060249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:106-308
               
               
               Cow position:chr17:22557583-22557786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):65, 84

               
               
               Conread position:108-241
               
               
               Cow position:chr17:26205844-26205710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:112-206
               
               
               Cow position:chr17:24781015-24781109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:79
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:112-294
               
               
               Cow position:chr17:13929635-13929818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-294
               
               
               Cow position:chr17:14894120-14894303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-294
               
               
               Cow position:chr17:18103713-18103535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:112-575
               
               
               Cow position:chr17:14325535-14325091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:113-294
               
               
               Cow position:chr17:1946944-1947119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:113-315
               
               
               Cow position:chr17:1880059-1880268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:114-277
               
               
               Cow position:chr17:9653487-9653323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:137
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-280
               
               
               Cow position:chr17:1382845-1382678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:139
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-290
               
               
               Cow position:chr17:20665757-20665580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:144
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-293
               
               
               Cow position:chr17:181332-181514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:148
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-293
               
               
               Cow position:chr17:2262075-2262253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):102, 135

               
               
               Conread position:114-293
               
               
               Cow position:chr17:43952593-43952412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):102, 25

               
               
               Conread position:114-294
               
               
               Cow position:chr17:15323215-15323395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):102, 84

               
               
               Conread position:114-330
               
               
               Cow position:chr17:2147141-2147358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):82, 33

               
               
               Conread position:115-293
               
               
               Cow position:chr17:31768069-31767888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:119-279
               
               
               Cow position:chr17:43988507-43988668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):97, 132

               
               
               Conread position:121-308
               
               
               Cow position:chr17:20087768-20087582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):95, 116

               
               
               Conread position:123-262
               
               
               Cow position:chr17:2588285-2588421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):93, 16

               
               
               Conread position:127-293
               
               
               Cow position:chr17:34156110-34156279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:129-258
               
               
               Cow position:chr17:36987687-36987557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:129-385
               
               
               Cow position:chr17:4081615-4081876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 73

               
               
               Conread position:139-294
               
               
               Cow position:chr17:22429499-22429338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):77, 27

               
               
               Conread position:144-350
               
               
               Cow position:chr17:1658569-1658360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):27, 90

               
               
               Conread position:149-292
               
               
               Cow position:chr17:602434-602289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:156-265
               
               
               Cow position:chr17:602694-602804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:166-294
               
               
               Cow position:chr17:20073216-20073096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:287-542
               
               
               Cow position:chr17:36987552-36987305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:190
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):221, 42

               
               
               Conread position:383-664
               
               
               Cow position:chr17:22557909-22558183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):80, 8

               
               
               Conread position:383-680
               
               
               Cow position:chr17:152180-151905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):178, 20

               
               
               Conread position:383-680
               
               
               Cow position:chr17:20401986-20402272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 17

               
               
               Conread position:383-690
               
               
               Cow position:chr17:18193503-18193801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):129, 40

               
               
               Conread position:385-732
               
               
               Cow position:chr17:18300494-18300144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 33

               
               
               Conread position:387-719
               
               
               Cow position:chr17:4081967-4082300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):121, 55

               
               
               Conread position:390-722
               
               
               Cow position:chr17:42264829-42265161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:234
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):192, 120

               
               
               Conread position:419-719
               
               
               Cow position:chr17:12670136-12669838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:216
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):65, 49

               
               
               Conread position:432-728
               
               
               Cow position:chr17:16900206-16899908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):18, 67

               
               
               Conread position:443-726
               
               
               Cow position:chr17:19019537-19019818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):65, 54

               
               
               Conread position:449-732
               
               
               Cow position:chr17:3708819-3708527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):42, 104

               
               
               Conread position:461-732
               
               
               Cow position:chr17:20487982-20488253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):127, 17

               
               
               Conread position:483-732
               
               
               Cow position:chr17:24030000-24029748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):9, 59

               
               
               Conread position:552-702
               
               
               Cow position:chr17:14052156-14052015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:585-727
               
               
               Cow position:chr17:20073136-20072998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):65, 15

               
               
               Conread position:630-732
               
               
               Cow position:chr17:2579767-2579866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:86
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:632-732
               
               
               Cow position:chr17:6259995-6260094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:86
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):14, 41

               
               
               Conread position:632-732
               
               
               Cow position:chr17:11087573-11087473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:87
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):14, 33

               
               
               Conread position:632-732
               
               
               Cow position:chr17:13856620-13856519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:84
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:632-732
               
               
               Cow position:chr17:25737816-25737914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:84
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:632-732
               
               
               Cow position:chr17:40804970-40805069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:83
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:88-294
               
               
               Cow position:chr18:6869106-6868901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 29

               
               
               Conread position:92-294
               
               
               Cow position:chr18:33359023-33359225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:170
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 27

               
               
               Conread position:93-294
               
               
               Cow position:chr18:33268983-33269183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:167
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 24

               
               
               Conread position:95-214
               
               
               Cow position:chr18:32652379-32652496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:95-240
               
               
               Cow position:chr18:18089313-18089172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-258
               
               
               Cow position:chr18:114551-114711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-259
               
               
               Cow position:chr18:45958878-45959039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-274
               
               
               Cow position:chr18:52651080-52651257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):121, 12

               
               
               Conread position:95-280
               
               
               Cow position:chr18:51480999-51481183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):119, 22

               
               
               Conread position:95-288
               
               
               Cow position:chr18:2019526-2019335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:163
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 22

               
               
               Conread position:95-288
               
               
               Cow position:chr18:33336027-33336214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):121, 14

               
               
               Conread position:95-288
               
               
               Cow position:chr18:35335639-35335831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:165
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr18:11274946-11274747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:158
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):121, 14

               
               
               Conread position:95-293
               
               
               Cow position:chr18:16078877-16079074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:158
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):121, 15

               
               
               Conread position:95-293
               
               
               Cow position:chr18:27838156-27837960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):121, 12

               
               
               Conread position:95-293
               
               
               Cow position:chr18:51341846-51342045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:159
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):121, 12

               
               
               Conread position:95-293
               
               
               Cow position:chr18:51462918-51462720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):121, 18

               
               
               Conread position:95-294
               
               
               Cow position:chr18:14416136-14416333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:157
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:95-294
               
               
               Cow position:chr18:16176454-16176260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):119, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr18:17992261-17992063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:170
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 15

               
               
               Conread position:95-294
               
               
               Cow position:chr18:19539420-19539227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:160
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):121, 15

               
               
               Conread position:95-294
               
               
               Cow position:chr18:23797807-23798005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:158
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr18:36508492-36508690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:155
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):121, 20

               
               
               Conread position:95-294
               
               
               Cow position:chr18:37505223-37505421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):35, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr18:41840665-41840467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:157
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr18:47719424-47719226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-295
               
               
               Cow position:chr18:51310745-51310942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:166
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 21

               
               
               Conread position:95-314
               
               
               Cow position:chr18:53785999-53786217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:173
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-317
               
               
               Cow position:chr18:27987220-27987444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-319
               
               
               Cow position:chr18:47742178-47742400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-326
               
               
               Cow position:chr18:51258143-51258376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-327
               
               
               Cow position:chr18:46877848-46877618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):122, 22

               
               
               Conread position:95-328
               
               
               Cow position:chr18:14130544-14130774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-332
               
               
               Cow position:chr18:1521288-1521543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:198
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):66, 10

               
               
               Conread position:95-332
               
               
               Cow position:chr18:16534138-16534381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-332
               
               
               Cow position:chr18:43146766-43146525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-369
               
               
               Cow position:chr18:16843178-16842908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:95-371
               
               
               Cow position:chr18:37599382-37599109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-385
               
               
               Cow position:chr18:2886861-2886572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-703
               
               
               Cow position:chr18:29236969-29237566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:477
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-732
               
               
               Cow position:chr18:54171700-54171078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:649
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 19

               
               
               Conread position:96-220
               
               
               Cow position:chr18:54024199-54024077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:96-288
               
               
               Cow position:chr18:39748739-39748929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:160
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 21

               
               
               Conread position:97-293
               
               
               Cow position:chr18:22602649-22602844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):119, 12

               
               
               Conread position:97-293
               
               
               Cow position:chr18:51689786-51689981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):119, 12

               
               
               Conread position:112-280
               
               
               Cow position:chr18:28973728-28973559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-281
               
               
               Cow position:chr18:23944200-23944030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:150
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-293
               
               
               Cow position:chr18:40478558-40478739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:112-294
               
               
               Cow position:chr18:32293941-32294116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:150
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):30, 69

               
               
               Conread position:112-294
               
               
               Cow position:chr18:48222054-48222236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:158
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 87

               
               
               Conread position:112-365
               
               
               Cow position:chr18:16877645-16877890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):104, 86

               
               
               Conread position:112-371
               
               
               Cow position:chr18:29763545-29763798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:193
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):104, 86

               
               
               Conread position:112-371
               
               
               Cow position:chr18:54269758-54270011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):24, 91

               
               
               Conread position:112-382
               
               
               Cow position:chr18:36210943-36210675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):99, 43

               
               
               Conread position:114-280
               
               
               Cow position:chr18:55088748-55088581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:139
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-293
               
               
               Cow position:chr18:24040556-24040373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-293
               
               
               Cow position:chr18:33953392-33953218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:114-294
               
               
               Cow position:chr18:19352562-19352742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:148
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):102, 161

               
               
               Conread position:120-342
               
               
               Cow position:chr18:54003708-54003928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):188, 91

               
               
               Conread position:129-496
               
               
               Cow position:chr18:56462711-56462346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 162

               
               
               Conread position:135-294
               
               
               Cow position:chr18:54044524-54044365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:136-346
               
               
               Cow position:chr18:51629645-51629845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):80, 24

               
               
               Conread position:144-325
               
               
               Cow position:chr18:51237716-51237900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):66, 54

               
               
               Conread position:147-324
               
               
               Cow position:chr18:24700905-24700723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:213-371
               
               
               Cow position:chr18:35289593-35289752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):121, 113

               
               
               Conread position:383-574
               
               
               Cow position:chr18:2886489-2886300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):131, 34

               
               
               Conread position:383-666
               
               
               Cow position:chr18:54270113-54270374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:394-633
               
               
               Cow position:chr18:16842798-16842567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):117, 7

               
               
               Conread position:485-731
               
               
               Cow position:chr18:8168916-8169160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):129, 28

               
               
               Conread position:487-676
               
               
               Cow position:chr18:51275715-51275529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):21, 7

               
               
               Conread position:510-690
               
               
               Cow position:chr18:16878344-16878520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):107, 16

               
               
               Conread position:511-721
               
               
               Cow position:chr18:46868323-46868117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):81, 55

               
               
               Conread position:555-719
               
               
               Cow position:chr18:29765246-29765419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr18:14130745-14130850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr18:36508688-36508792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr18:37505419-37505522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:91
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:627-732
               
               
               Cow position:chr18:28973546-28973443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:90
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:632-732
               
               
               Cow position:chr18:33336221-33336324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:87
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:632-732
               
               
               Cow position:chr18:52651278-52651377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:86
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):13, 52

               
               
               Conread position:637-732
               
               
               Cow position:chr18:24700748-24700653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:96
               
               
               Alignm identity:82
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-488
               
               
               Cow position:chr19:32223381-32222905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 48

               
               
               Conread position:81-294
               
               
               Cow position:chr19:28581511-28581299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):10, 31

               
               
               Conread position:92-371
               
               
               Cow position:chr19:30755341-30755608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):124, 25

               
               
               Conread position:95-233
               
               
               Cow position:chr19:4532620-4532483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):119, 22

               
               
               Conread position:95-239
               
               
               Cow position:chr19:40887488-40887350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):46, 10

               
               
               Conread position:95-247
               
               
               Cow position:chr19:350127-349976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):118, 22

               
               
               Conread position:95-251
               
               
               Cow position:chr19:39688693-39688846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-274
               
               
               Cow position:chr19:7488477-7488655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):121, 21

               
               
               Conread position:95-279
               
               
               Cow position:chr19:439493-439310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):121, 24

               
               
               Conread position:95-279
               
               
               Cow position:chr19:20104876-20105060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):118, 22

               
               
               Conread position:95-281
               
               
               Cow position:chr19:76105-75920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:153
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):119, 22

               
               
               Conread position:95-287
               
               
               Cow position:chr19:10672142-10671951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:156
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-288
               
               
               Cow position:chr19:28376648-28376842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 18

               
               
               Conread position:95-292
               
               
               Cow position:chr19:29209763-29209958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:164
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr19:772763-772960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:157
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr19:1032239-1032436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:167
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr19:7342232-7342431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:160
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr19:32211909-32211710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:158
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr19:43143880-43144079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):121, 12

               
               
               Conread position:95-294
               
               
               Cow position:chr19:416825-417022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:165
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr19:4385644-4385831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):97, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr19:33873590-33873788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr19:33941774-33941972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):98, 22

               
               
               Conread position:95-317
               
               
               Cow position:chr19:39390672-39390893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-325
               
               
               Cow position:chr19:893451-893224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:177
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):121, 10

               
               
               Conread position:95-327
               
               
               Cow position:chr19:6553766-6553989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):61, 22

               
               
               Conread position:95-364
               
               
               Cow position:chr19:42248970-42249236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-391
               
               
               Cow position:chr19:35376951-35377236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-728
               
               
               Cow position:chr19:352829-352193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:652
               
               
               Alignm identity:463
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 22

               
               
               Conread position:95-728
               
               
               Cow position:chr19:377738-377117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:645
               
               
               Alignm identity:449
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:96-293
               
               
               Cow position:chr19:40852273-40852077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:156
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):120, 21

               
               
               Conread position:101-289
               
               
               Cow position:chr19:40817533-40817346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:153
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):115, 14

               
               
               Conread position:112-256
               
               
               Cow position:chr19:439282-439137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-262
               
               
               Cow position:chr19:2274199-2274048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-274
               
               
               Cow position:chr19:32665709-32665867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:140
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):104, 46

               
               
               Conread position:112-280
               
               
               Cow position:chr19:38074-38243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:141
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-294
               
               
               Cow position:chr19:172390-172572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):102, 170

               
               
               Conread position:112-294
               
               
               Cow position:chr19:204140-204323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:112-294
               
               
               Cow position:chr19:5729007-5729191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:112-384
               
               
               Cow position:chr19:15954032-15954285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):104, 21

               
               
               Conread position:113-385
               
               
               Cow position:chr19:42648932-42648664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 117

               
               
               Conread position:114-250
               
               
               Cow position:chr19:32244865-32245002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-293
               
               
               Cow position:chr19:687246-687426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):102, 63

               
               
               Conread position:114-293
               
               
               Cow position:chr19:52151649-52151467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:148
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:118-280
               
               
               Cow position:chr19:170562-170399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:127-294
               
               
               Cow position:chr19:341416-341583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):41, 12

               
               
               Conread position:142-324
               
               
               Cow position:chr19:4532420-4532245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):72, 92

               
               
               Conread position:148-732
               
               
               Cow position:chr19:163215-162636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 157

               
               
               Conread position:149-371
               
               
               Cow position:chr19:27037735-27037514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):24, 14

               
               
               Conread position:150-723
               
               
               Cow position:chr19:42902-43470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 210

               
               
               Conread position:158-732
               
               
               Cow position:chr19:27052623-27052052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 96

               
               
               Conread position:172-293
               
               
               Cow position:chr19:5208411-5208533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:221-732
               
               
               Cow position:chr19:263092-263612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 113

               
               
               Conread position:230-721
               
               
               Cow position:chr19:137058-136559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):278, 54

               
               
               Conread position:268-647
               
               
               Cow position:chr19:44532448-44532835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 300

               
               
               Conread position:268-674
               
               
               Cow position:chr19:47610411-47610006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 191

               
               
               Conread position:359-732
               
               
               Cow position:chr19:3138021-3138400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 132

               
               
               Conread position:383-727
               
               
               Cow position:chr19:44224814-44224496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):341, 41

               
               
               Conread position:383-732
               
               
               Cow position:chr19:32182965-32182617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):23, 6

               
               
               Conread position:417-715
               
               
               Cow position:chr19:17018978-17019278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):27, 18

               
               
               Conread position:488-726
               
               
               Cow position:chr19:39689242-39689481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):20, 56

               
               
               Conread position:497-732
               
               
               Cow position:chr19:32222794-32222555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:184
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):11, 69

               
               
               Conread position:504-727
               
               
               Cow position:chr19:39669272-39669050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 5

               
               
               Conread position:512-705
               
               
               Cow position:chr19:189682-189876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):125, 106

               
               
               Conread position:526-732
               
               
               Cow position:chr19:35377417-35377626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):36, 57

               
               
               Conread position:546-732
               
               
               Cow position:chr19:2274110-2273922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):16, 121

               
               
               Conread position:581-732
               
               
               Cow position:chr19:893292-893144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):29, 13

               
               
               Conread position:610-732
               
               
               Cow position:chr19:439097-438977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr19:172570-172675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr19:28581301-28581197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr19:39185186-39185082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:2-718
               
               
               Cow position:chr2:34565422-34564712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:529
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 209

               
               
               Conread position:37-295
               
               
               Cow position:chr2:54737058-54737315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:165
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):179, 80

               
               
               Conread position:77-247
               
               
               Cow position:chr2:202072-201908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):20, 7

               
               
               Conread position:88-294
               
               
               Cow position:chr2:44106510-44106305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:167
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 29

               
               
               Conread position:92-293
               
               
               Cow position:chr2:47038809-47038609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):190, 25

               
               
               Conread position:92-294
               
               
               Cow position:chr2:36979979-36980179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):124, 13

               
               
               Conread position:92-294
               
               
               Cow position:chr2:46946271-46946471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:166
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:92-361
               
               
               Cow position:chr2:28747064-28747327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):129, 27

               
               
               Conread position:95-199
               
               
               Cow position:chr2:10729950-10729849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:90
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:95-213
               
               
               Cow position:chr2:54649216-54649100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:96
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:95-279
               
               
               Cow position:chr2:14560792-14560969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):99, 13

               
               
               Conread position:95-280
               
               
               Cow position:chr2:16899853-16900039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):66, 22

               
               
               Conread position:95-280
               
               
               Cow position:chr2:57334803-57334986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-280
               
               
               Cow position:chr2:67419693-67419509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:149
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-281
               
               
               Cow position:chr2:4404741-4404557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-281
               
               
               Cow position:chr2:52152260-52152073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:159
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 100

               
               
               Conread position:95-287
               
               
               Cow position:chr2:11969163-11968971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:161
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-287
               
               
               Cow position:chr2:44346322-44346513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:165
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-288
               
               
               Cow position:chr2:2101864-2101672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:160
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-288
               
               
               Cow position:chr2:5481061-5480871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:163
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-288
               
               
               Cow position:chr2:6772565-6772374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:160
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:95-288
               
               
               Cow position:chr2:59414074-59413882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:160
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-288
               
               
               Cow position:chr2:82167215-82167407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:158
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-292
               
               
               Cow position:chr2:2088567-2088371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):47, 14

               
               
               Conread position:95-293
               
               
               Cow position:chr2:175922-175725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):121, 14

               
               
               Conread position:95-293
               
               
               Cow position:chr2:212614-212416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:161
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):121, 21

               
               
               Conread position:95-293
               
               
               Cow position:chr2:6960352-6960550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):91, 14

               
               
               Conread position:95-293
               
               
               Cow position:chr2:9907519-9907718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr2:25030869-25030671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:160
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr2:39421184-39421384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:161
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr2:41686122-41686319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:159
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):119, 8

               
               
               Conread position:95-293
               
               
               Cow position:chr2:52062273-52062470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:159
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):121, 21

               
               
               Conread position:95-294
               
               
               Cow position:chr2:10186627-10186429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr2:10711830-10711632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:167
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr2:24922005-24922204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):119, 21

               
               
               Conread position:95-294
               
               
               Cow position:chr2:28792857-28793055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):121, 10

               
               
               Conread position:95-294
               
               
               Cow position:chr2:32654941-32655140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:166
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 10

               
               
               Conread position:95-294
               
               
               Cow position:chr2:50077202-50077400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):121, 10

               
               
               Conread position:95-294
               
               
               Cow position:chr2:50983622-50983425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:158
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):121, 12

               
               
               Conread position:95-294
               
               
               Cow position:chr2:72922225-72922027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:162
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 24

               
               
               Conread position:95-316
               
               
               Cow position:chr2:4926570-4926348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-316
               
               
               Cow position:chr2:44935481-44935259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 14

               
               
               Conread position:95-318
               
               
               Cow position:chr2:78741736-78741962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:175
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):95, 22

               
               
               Conread position:95-322
               
               
               Cow position:chr2:41172284-41172510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-325
               
               
               Cow position:chr2:53329352-53329580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-335
               
               
               Cow position:chr2:45213683-45213439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):87, 22

               
               
               Conread position:95-342
               
               
               Cow position:chr2:5813792-5813531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):43, 22

               
               
               Conread position:95-346
               
               
               Cow position:chr2:16076689-16076442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:190
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-361
               
               
               Cow position:chr2:63292960-63292694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):120, 22

               
               
               Conread position:95-366
               
               
               Cow position:chr2:50321884-50322149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):46, 22

               
               
               Conread position:95-370
               
               
               Cow position:chr2:51305129-51304862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 122

               
               
               Conread position:95-371
               
               
               Cow position:chr2:3837393-3837119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:209
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-371
               
               
               Cow position:chr2:7211305-7211577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 22

               
               
               Conread position:95-371
               
               
               Cow position:chr2:42333689-42333395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:211
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):11, 104

               
               
               Conread position:95-371
               
               
               Cow position:chr2:74391510-74391224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):27, 45

               
               
               Conread position:95-385
               
               
               Cow position:chr2:32389391-32389680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 22

               
               
               Conread position:95-406
               
               
               Cow position:chr2:7901889-7902190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 20

               
               
               Conread position:95-490
               
               
               Cow position:chr2:36054046-36053659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-579
               
               
               Cow position:chr2:2356868-2356387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 24

               
               
               Conread position:95-675
               
               
               Cow position:chr2:16288835-16289401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 22

               
               
               Conread position:95-683
               
               
               Cow position:chr2:15577955-15577391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:453
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):413, 9

               
               
               Conread position:95-685
               
               
               Cow position:chr2:14822107-14822681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:464
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 24

               
               
               Conread position:95-727
               
               
               Cow position:chr2:28643518-28642917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:639
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-732
               
               
               Cow position:chr2:39621894-39622526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:653
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 19

               
               
               Conread position:96-287
               
               
               Cow position:chr2:80516676-80516858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):62, 99

               
               
               Conread position:96-293
               
               
               Cow position:chr2:44090907-44091106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):120, 21

               
               
               Conread position:96-294
               
               
               Cow position:chr2:13046098-13045902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):120, 21

               
               
               Conread position:96-311
               
               
               Cow position:chr2:47603847-47603642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):7, 14

               
               
               Conread position:96-319
               
               
               Cow position:chr2:49604323-49604543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):118, 21

               
               
               Conread position:96-326
               
               
               Cow position:chr2:78762080-78762311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:184
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):188, 21

               
               
               Conread position:96-615
               
               
               Cow position:chr2:28621219-28620728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 21

               
               
               Conread position:97-293
               
               
               Cow position:chr2:2184648-2184453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:159
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):119, 12

               
               
               Conread position:97-293
               
               
               Cow position:chr2:3324956-3324761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):119, 12

               
               
               Conread position:97-293
               
               
               Cow position:chr2:5474124-5474319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):119, 12

               
               
               Conread position:97-293
               
               
               Cow position:chr2:57142078-57141883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):119, 12

               
               
               Conread position:97-293
               
               
               Cow position:chr2:80956028-80955833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):119, 12

               
               
               Conread position:97-294
               
               
               Cow position:chr2:10843742-10843546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:169
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 22

               
               
               Conread position:97-337
               
               
               Cow position:chr2:28616597-28616362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:182
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):120, 7

               
               
               Conread position:99-294
               
               
               Cow position:chr2:422677-422872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:167
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 15

               
               
               Conread position:112-234
               
               
               Cow position:chr2:52656086-52656210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:112-249
               
               
               Cow position:chr2:85356150-85356019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:112-259
               
               
               Cow position:chr2:22077412-22077559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):102, 139

               
               
               Conread position:112-271
               
               
               Cow position:chr2:283071-282910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-287
               
               
               Cow position:chr2:2363805-2363982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:149
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-293
               
               
               Cow position:chr2:5485632-5485447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):64, 154

               
               
               Conread position:112-294
               
               
               Cow position:chr2:11159505-11159323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):104, 11

               
               
               Conread position:112-294
               
               
               Cow position:chr2:28650606-28650427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):104, 36

               
               
               Conread position:112-294
               
               
               Cow position:chr2:47810632-47810817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:112-294
               
               
               Cow position:chr2:53473536-53473357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):104, 64

               
               
               Conread position:112-294
               
               
               Cow position:chr2:65938828-65938646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):104, 51

               
               
               Conread position:112-295
               
               
               Cow position:chr2:5905240-5905058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):104, 93

               
               
               Conread position:112-295
               
               
               Cow position:chr2:10269039-10268855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):104, 170

               
               
               Conread position:112-314
               
               
               Cow position:chr2:290210-290009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):100, 86

               
               
               Conread position:112-344
               
               
               Cow position:chr2:19009854-19010086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):104, 52

               
               
               Conread position:112-363
               
               
               Cow position:chr2:20874556-20874307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):136, 117

               
               
               Conread position:112-538
               
               
               Cow position:chr2:1673045-1672629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 20

               
               
               Conread position:113-294
               
               
               Cow position:chr2:42671765-42671584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):103, 41

               
               
               Conread position:113-325
               
               
               Cow position:chr2:5870726-5870517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):103, 47

               
               
               Conread position:114-279
               
               
               Cow position:chr2:26868891-26869056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:140
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):101, 116

               
               
               Conread position:114-279
               
               
               Cow position:chr2:51990907-51990741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-288
               
               
               Cow position:chr2:10612003-10611828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:144
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-291
               
               
               Cow position:chr2:2413173-2412995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-292
               
               
               Cow position:chr2:41656706-41656884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):102, 113

               
               
               Conread position:114-293
               
               
               Cow position:chr2:2380734-2380912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):168, 98

               
               
               Conread position:114-293
               
               
               Cow position:chr2:49471870-49472050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:146
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-293
               
               
               Cow position:chr2:52616096-52616275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:148
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):102, 95

               
               
               Conread position:114-319
               
               
               Cow position:chr2:26921319-26921520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):102, 168

               
               
               Conread position:114-475
               
               
               Cow position:chr2:36031111-36030757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 169

               
               
               Conread position:127-306
               
               
               Cow position:chr2:81256441-81256621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:135-288
               
               
               Cow position:chr2:768743-768590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):81, 41

               
               
               Conread position:139-293
               
               
               Cow position:chr2:49590049-49590204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:145-366
               
               
               Cow position:chr2:75676265-75676040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):72, 86

               
               
               Conread position:151-441
               
               
               Cow position:chr2:41149652-41149941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 79

               
               
               Conread position:155-349
               
               
               Cow position:chr2:85068895-85068713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):62, 127

               
               
               Conread position:168-294
               
               
               Cow position:chr2:1490299-1490172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:176-293
               
               
               Cow position:chr2:57588382-57588501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):40, 27

               
               
               Conread position:190-366
               
               
               Cow position:chr2:73191649-73191824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):26, 40

               
               
               Conread position:198-413
               
               
               Cow position:chr2:24393460-24393251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:167
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:209-475
               
               
               Cow position:chr2:15062340-15062082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:205
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):73, 53

               
               
               Conread position:228-386
               
               
               Cow position:chr2:201719-201562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):11, 52

               
               
               Conread position:321-732
               
               
               Cow position:chr2:5485455-5485071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 58

               
               
               Conread position:377-690
               
               
               Cow position:chr2:3836633-3836325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):11, 25

               
               
               Conread position:383-722
               
               
               Cow position:chr2:20920876-20920539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):52, 32

               
               
               Conread position:383-732
               
               
               Cow position:chr2:11729439-11729769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:383-732
               
               
               Cow position:chr2:42333293-42332948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 29

               
               
               Conread position:410-616
               
               
               Cow position:chr2:24393006-24392812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):154, 82

               
               
               Conread position:412-732
               
               
               Cow position:chr2:28747744-28748052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):247, 8

               
               
               Conread position:415-680
               
               
               Cow position:chr2:782141-781881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 71

               
               
               Conread position:427-732
               
               
               Cow position:chr2:5963484-5963176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 55

               
               
               Conread position:443-722
               
               
               Cow position:chr2:77208672-77208948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):69, 54

               
               
               Conread position:461-727
               
               
               Cow position:chr2:78741933-78742210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):17, 130

               
               
               Conread position:466-732
               
               
               Cow position:chr2:1362803-1363066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 26

               
               
               Conread position:467-681
               
               
               Cow position:chr2:41149942-41150151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):42, 16

               
               
               Conread position:468-716
               
               
               Cow position:chr2:14778473-14778219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):170, 45

               
               
               Conread position:468-722
               
               
               Cow position:chr2:35355330-35355591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):14, 91

               
               
               Conread position:482-732
               
               
               Cow position:chr2:7902680-7902920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):26, 60

               
               
               Conread position:483-681
               
               
               Cow position:chr2:73192643-73192828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):31, 74

               
               
               Conread position:483-732
               
               
               Cow position:chr2:36030682-36030432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:195
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):25, 149

               
               
               Conread position:484-727
               
               
               Cow position:chr2:36053347-36053096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):24, 161

               
               
               Conread position:510-719
               
               
               Cow position:chr2:53553457-53553663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):54, 59

               
               
               Conread position:546-726
               
               
               Cow position:chr2:41686226-41686407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:552-704
               
               
               Cow position:chr2:767841-767681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:556-732
               
               
               Cow position:chr2:74390750-74390580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):62, 12

               
               
               Conread position:560-726
               
               
               Cow position:chr2:36980108-36980275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):32, 64

               
               
               Conread position:605-727
               
               
               Cow position:chr2:199007-198891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:99
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:609-732
               
               
               Cow position:chr2:53329538-53329659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:101
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):13, 35

               
               
               Conread position:625-727
               
               
               Cow position:chr2:10186432-10186332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:86
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:626-726
               
               
               Cow position:chr2:10268858-10268760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:86
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:626-727
               
               
               Cow position:chr2:13045904-13045805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:87
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr2:8118338-8118442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr2:11159325-11159221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr2:28650429-28650326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:90
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:627-727
               
               
               Cow position:chr2:78762259-78762361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:88
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:630-732
               
               
               Cow position:chr2:52062473-52062573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:632-726
               
               
               Cow position:chr2:24146664-24146759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:96
               
               
               Alignm identity:82
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:635-730
               
               
               Cow position:chr2:80516868-80516964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:83
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:90-365
               
               
               Cow position:chr20:22206650-22206925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 28

               
               
               Conread position:91-325
               
               
               Cow position:chr20:21393703-21393947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):20, 226

               
               
               Conread position:94-296
               
               
               Cow position:chr20:28463593-28463796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):21, 10

               
               
               Conread position:95-279
               
               
               Cow position:chr20:21914448-21914631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):56, 22

               
               
               Conread position:95-281
               
               
               Cow position:chr20:24614655-24614841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:156
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 22

               
               
               Conread position:95-288
               
               
               Cow position:chr20:28476419-28476603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):46, 22

               
               
               Conread position:95-290
               
               
               Cow position:chr20:23469538-23469351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr20:822888-823087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:163
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):121, 14

               
               
               Conread position:95-293
               
               
               Cow position:chr20:13763024-13763222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):47, 19

               
               
               Conread position:95-294
               
               
               Cow position:chr20:3033182-3033380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:165
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr20:3252013-3251816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:167
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr20:7116348-7116151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:158
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr20:15947257-15947060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:165
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr20:23799003-23799204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):47, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr20:27869318-27869516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):121, 18

               
               
               Conread position:95-294
               
               
               Cow position:chr20:35119691-35119888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-295
               
               
               Cow position:chr20:3684367-3684168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:170
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 24

               
               
               Conread position:95-301
               
               
               Cow position:chr20:12438640-12438435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-317
               
               
               Cow position:chr20:5484310-5484534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-317
               
               
               Cow position:chr20:15292131-15292352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:170
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-335
               
               
               Cow position:chr20:3270825-3271069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:187
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):121, 18

               
               
               Conread position:95-347
               
               
               Cow position:chr20:9953864-9953617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-371
               
               
               Cow position:chr20:13434831-13434566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):41, 18

               
               
               Conread position:95-371
               
               
               Cow position:chr20:31378764-31378492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):127, 20

               
               
               Conread position:95-401
               
               
               Cow position:chr20:8993524-8993210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):121, 14

               
               
               Conread position:97-293
               
               
               Cow position:chr20:5560592-5560397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):119, 12

               
               
               Conread position:97-293
               
               
               Cow position:chr20:25961226-25961421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:159
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):44, 12

               
               
               Conread position:112-270
               
               
               Cow position:chr20:13665075-13664921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):30, 84

               
               
               Conread position:112-274
               
               
               Cow position:chr20:29948635-29948798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:112-287
               
               
               Cow position:chr20:8313304-8313127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:152
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-288
               
               
               Cow position:chr20:15064902-15065078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):57, 63

               
               
               Conread position:112-293
               
               
               Cow position:chr20:28565460-28565278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-294
               
               
               Cow position:chr20:5535073-5535256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:146
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-294
               
               
               Cow position:chr20:8004090-8003907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:146
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-294
               
               
               Cow position:chr20:25850855-25850672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-317
               
               
               Cow position:chr20:15097742-15097535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):38, 62

               
               
               Conread position:112-368
               
               
               Cow position:chr20:10856897-10856642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):104, 77

               
               
               Conread position:114-280
               
               
               Cow position:chr20:19438087-19438245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:114-327
               
               
               Cow position:chr20:13679920-13679702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 210

               
               
               Conread position:116-316
               
               
               Cow position:chr20:10845982-10845779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:159
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:127-294
               
               
               Cow position:chr20:28160922-28161089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):89, 45

               
               
               Conread position:128-354
               
               
               Cow position:chr20:22717589-22717361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):71, 65

               
               
               Conread position:160-293
               
               
               Cow position:chr20:19495167-19495301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:163-732
               
               
               Cow position:chr20:18315423-18314892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 11

               
               
               Conread position:358-732
               
               
               Cow position:chr20:8215554-8215939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 127

               
               
               Conread position:442-651
               
               
               Cow position:chr20:22207079-22207285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):69, 19

               
               
               Conread position:468-719
               
               
               Cow position:chr20:35104940-35105188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):44, 24

               
               
               Conread position:488-732
               
               
               Cow position:chr20:8993045-8992803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):24, 59

               
               
               Conread position:511-722
               
               
               Cow position:chr20:3893313-3893525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):112, 33

               
               
               Conread position:524-719
               
               
               Cow position:chr20:11591677-11591879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):87, 44

               
               
               Conread position:546-717
               
               
               Cow position:chr20:25961328-25961502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:550-719
               
               
               Cow position:chr20:20754238-20754070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):13, 29

               
               
               Conread position:610-723
               
               
               Cow position:chr20:35124796-35124907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:93
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:626-727
               
               
               Cow position:chr20:5535254-5535353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:86
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-727
               
               
               Cow position:chr20:8003909-8003810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:85
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr20:29948815-29948922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:89
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):64, 38

               
               
               Conread position:627-732
               
               
               Cow position:chr20:15097559-15097456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:87
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:630-727
               
               
               Cow position:chr20:21914648-21914743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:83
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:630-732
               
               
               Cow position:chr20:13763225-13763325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:632-732
               
               
               Cow position:chr20:25850671-25850571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:85
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):13, 33

               
               
               Conread position:92-279
               
               
               Cow position:chr21:20744528-20744346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):124, 17

               
               
               Conread position:93-707
               
               
               Cow position:chr21:2541176-2540570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:460
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 16

               
               
               Conread position:95-234
               
               
               Cow position:chr21:47939716-47939849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):118, 22

               
               
               Conread position:95-239
               
               
               Cow position:chr21:3426725-3426868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):121, 10

               
               
               Conread position:95-250
               
               
               Cow position:chr21:47948349-47948502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-260
               
               
               Cow position:chr21:216529-216693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):107, 22

               
               
               Conread position:95-262
               
               
               Cow position:chr21:10850320-10850485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):121, 24

               
               
               Conread position:95-281
               
               
               Cow position:chr21:2788752-2788568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:157
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-290
               
               
               Cow position:chr21:18820188-18819996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:159
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:95-293
               
               
               Cow position:chr21:11505827-11506035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):76, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr21:26638225-26638026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:162
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr21:1191403-1191601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr21:1291951-1291753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:157
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr21:3798131-3797933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:167
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr21:4457066-4457264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:167
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr21:10566913-10567106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):121, 24

               
               
               Conread position:95-294
               
               
               Cow position:chr21:13123764-13123568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr21:30562042-30562240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:160
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):121, 14

               
               
               Conread position:95-294
               
               
               Cow position:chr21:35144008-35144194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:95-294
               
               
               Cow position:chr21:35596608-35596804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:161
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr21:40271437-40271238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):121, 27

               
               
               Conread position:95-294
               
               
               Cow position:chr21:48116341-48116539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):119, 22

               
               
               Conread position:95-308
               
               
               Cow position:chr21:2416468-2416671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):201, 22

               
               
               Conread position:95-320
               
               
               Cow position:chr21:23601434-23601651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):151, 14

               
               
               Conread position:95-331
               
               
               Cow position:chr21:2510891-2511132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:187
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):121, 12

               
               
               Conread position:95-332
               
               
               Cow position:chr21:7267305-7267056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):50, 24

               
               
               Conread position:95-332
               
               
               Cow position:chr21:31559415-31559177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-350
               
               
               Cow position:chr21:21914526-21914779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-359
               
               
               Cow position:chr21:23861027-23861280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):46, 10

               
               
               Conread position:95-479
               
               
               Cow position:chr21:23812115-23812497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-506
               
               
               Cow position:chr21:30226259-30226656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-732
               
               
               Cow position:chr21:9891832-9892472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:663
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 22

               
               
               Conread position:96-294
               
               
               Cow position:chr21:30599683-30599488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:157
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):120, 21

               
               
               Conread position:96-306
               
               
               Cow position:chr21:4589750-4589541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):120, 11

               
               
               Conread position:97-279
               
               
               Cow position:chr21:37045152-37045333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):118, 12

               
               
               Conread position:97-280
               
               
               Cow position:chr21:11453414-11453232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):119, 12

               
               
               Conread position:97-293
               
               
               Cow position:chr21:6339808-6340005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:157
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):119, 12

               
               
               Conread position:97-293
               
               
               Cow position:chr21:26650283-26650478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):119, 12

               
               
               Conread position:99-294
               
               
               Cow position:chr21:2529884-2529690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:159
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):34, 18

               
               
               Conread position:100-690
               
               
               Cow position:chr21:4183765-4184331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:457
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 17

               
               
               Conread position:104-324
               
               
               Cow position:chr21:2502136-2502360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):30, 56

               
               
               Conread position:107-294
               
               
               Cow position:chr21:33251755-33251943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):13, 83

               
               
               Conread position:112-294
               
               
               Cow position:chr21:146178-146360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):104, 70

               
               
               Conread position:112-294
               
               
               Cow position:chr21:2883493-2883311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:151
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):104, 160

               
               
               Conread position:112-294
               
               
               Cow position:chr21:3779021-3779204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-294
               
               
               Cow position:chr21:34293271-34293453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:158
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:112-361
               
               
               Cow position:chr21:36714884-36715131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):34, 87

               
               
               Conread position:112-712
               
               
               Cow position:chr21:359289-359887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 40

               
               
               Conread position:113-314
               
               
               Cow position:chr21:4087057-4087260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):29, 145

               
               
               Conread position:113-686
               
               
               Cow position:chr21:9870007-9870551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 20

               
               
               Conread position:114-279
               
               
               Cow position:chr21:12055744-12055578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-293
               
               
               Cow position:chr21:4090906-4091086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:146
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-293
               
               
               Cow position:chr21:39425320-39425502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:147
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-295
               
               
               Cow position:chr21:3615569-3615750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:155
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 85

               
               
               Conread position:115-279
               
               
               Cow position:chr21:4077097-4077260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):101, 84

               
               
               Conread position:118-293
               
               
               Cow position:chr21:46915849-46916025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:119-294
               
               
               Cow position:chr21:34258728-34258551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:147
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:127-294
               
               
               Cow position:chr21:27282655-27282823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:135-342
               
               
               Cow position:chr21:2674333-2674124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):81, 51

               
               
               Conread position:150-292
               
               
               Cow position:chr21:2716425-2716282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:127
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:193-727
               
               
               Cow position:chr21:29105-29612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:538
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 130

               
               
               Conread position:383-652
               
               
               Cow position:chr21:21947046-21946791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:383-727
               
               
               Cow position:chr21:21926130-21925790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:233
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):61, 29

               
               
               Conread position:415-732
               
               
               Cow position:chr21:2710744-2711037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):99, 33

               
               
               Conread position:483-719
               
               
               Cow position:chr21:23861609-23861846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:179
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):77, 30

               
               
               Conread position:528-732
               
               
               Cow position:chr21:2883412-2883209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):40, 11

               
               
               Conread position:548-732
               
               
               Cow position:chr21:27565747-27565935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):80, 17

               
               
               Conread position:549-727
               
               
               Cow position:chr21:21915040-21915221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:561-727
               
               
               Cow position:chr21:6109926-6110094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):6, 77

               
               
               Conread position:572-718
               
               
               Cow position:chr21:23812552-23812699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):43, 74

               
               
               Conread position:626-717
               
               
               Cow position:chr21:1191599-1191687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:92
               
               
               Alignm identity:80
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-727
               
               
               Cow position:chr21:33251941-33252041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:88
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr21:146358-146462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr21:10567104-10567208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr21:27282821-27282926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:86
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr21:30562238-30562342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr21:35144192-35144296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:90
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:632-723
               
               
               Cow position:chr21:2502329-2502421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:93
               
               
               Alignm identity:80
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:632-729
               
               
               Cow position:chr21:3779205-3779303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:632-732
               
               
               Cow position:chr21:40271242-40271141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:86
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:635-727
               
               
               Cow position:chr21:28735672-28735764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:93
               
               
               Alignm identity:78
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:27-732
               
               
               Cow position:chr22:3306745-3306035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:541
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 29

               
               
               Conread position:42-293
               
               
               Cow position:chr22:44369610-44369362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):44, 28

               
               
               Conread position:92-501
               
               
               Cow position:chr22:1270467-1270083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 25

               
               
               Conread position:93-287
               
               
               Cow position:chr22:117777-117583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:167
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 24

               
               
               Conread position:93-294
               
               
               Cow position:chr22:19143634-19143434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:160
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):123, 24

               
               
               Conread position:95-243
               
               
               Cow position:chr22:32485285-32485139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-260
               
               
               Cow position:chr22:44396518-44396681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):118, 22

               
               
               Conread position:95-262
               
               
               Cow position:chr22:45879543-45879376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:147
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 22

               
               
               Conread position:95-273
               
               
               Cow position:chr22:693693-693870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:146
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-276
               
               
               Cow position:chr22:37131711-37131880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):118, 22

               
               
               Conread position:95-288
               
               
               Cow position:chr22:18027347-18027538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:156
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):119, 24

               
               
               Conread position:95-288
               
               
               Cow position:chr22:41238240-41238430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):39, 22

               
               
               Conread position:95-289
               
               
               Cow position:chr22:1319464-1319658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:170
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 19

               
               
               Conread position:95-290
               
               
               Cow position:chr22:3278287-3278095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:157
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):121, 21

               
               
               Conread position:95-293
               
               
               Cow position:chr22:1878859-1879059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:162
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):121, 21

               
               
               Conread position:95-293
               
               
               Cow position:chr22:6020729-6020928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:163
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr22:39469456-39469259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr22:157840-157641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:161
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr22:525628-525428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):46, 13

               
               
               Conread position:95-294
               
               
               Cow position:chr22:560638-560440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):108, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr22:5672804-5673002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:163
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr22:5932930-5932735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):46, 14

               
               
               Conread position:95-294
               
               
               Cow position:chr22:31313408-31313604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr22:31334966-31334773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):121, 14

               
               
               Conread position:95-294
               
               
               Cow position:chr22:38938016-38937818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:164
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr22:42771522-42771720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:160
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr22:42991239-42991437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:158
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr22:46547597-46547399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:161
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-295
               
               
               Cow position:chr22:36533676-36533475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-301
               
               
               Cow position:chr22:18816318-18816114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):121, 10

               
               
               Conread position:95-315
               
               
               Cow position:chr22:16200540-16200758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:173
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):40, 22

               
               
               Conread position:95-317
               
               
               Cow position:chr22:44475311-44475522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):159, 22

               
               
               Conread position:95-321
               
               
               Cow position:chr22:8875056-8875278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):121, 14

               
               
               Conread position:95-325
               
               
               Cow position:chr22:21589391-21589612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:181
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-330
               
               
               Cow position:chr22:44352890-44352664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:95-332
               
               
               Cow position:chr22:15851397-15851624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):201, 12

               
               
               Conread position:95-333
               
               
               Cow position:chr22:39882109-39881868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 22

               
               
               Conread position:95-348
               
               
               Cow position:chr22:34598734-34598979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-371
               
               
               Cow position:chr22:7277588-7277858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):264, 16

               
               
               Conread position:95-403
               
               
               Cow position:chr22:6503610-6503304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 21

               
               
               Conread position:95-534
               
               
               Cow position:chr22:8136135-8135707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 23

               
               
               Conread position:95-712
               
               
               Cow position:chr22:41419628-41419031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 17

               
               
               Conread position:95-727
               
               
               Cow position:chr22:1283583-1282959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:642
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-732
               
               
               Cow position:chr22:13917570-13918195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:643
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-732
               
               
               Cow position:chr22:23853399-23854029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:640
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 18

               
               
               Conread position:95-732
               
               
               Cow position:chr22:44609663-44610266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:642
               
               
               Alignm identity:474
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 22

               
               
               Conread position:96-293
               
               
               Cow position:chr22:35672288-35672090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:160
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):120, 21

               
               
               Conread position:96-350
               
               
               Cow position:chr22:13675103-13674852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):50, 21

               
               
               Conread position:97-280
               
               
               Cow position:chr22:15313884-15313701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):45, 20

               
               
               Conread position:97-287
               
               
               Cow position:chr22:5308171-5308363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):45, 20

               
               
               Conread position:97-296
               
               
               Cow position:chr22:10546714-10546915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:160
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):119, 12

               
               
               Conread position:97-406
               
               
               Cow position:chr22:11031029-11031337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 10

               
               
               Conread position:112-209
               
               
               Cow position:chr22:31936618-31936521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:83
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:112-225
               
               
               Cow position:chr22:36274891-36275005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):24, 98

               
               
               Conread position:112-250
               
               
               Cow position:chr22:8740820-8740686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):104, 46

               
               
               Conread position:112-293
               
               
               Cow position:chr22:17328657-17328475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-294
               
               
               Cow position:chr22:34168414-34168596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):104, 135

               
               
               Conread position:112-294
               
               
               Cow position:chr22:36736840-36737024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:156
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:112-294
               
               
               Cow position:chr22:36861448-36861265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-294
               
               
               Cow position:chr22:44934061-44934244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-294
               
               
               Cow position:chr22:46853425-46853607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:154
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 65

               
               
               Conread position:112-350
               
               
               Cow position:chr22:1048489-1048721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):104, 27

               
               
               Conread position:113-274
               
               
               Cow position:chr22:36183841-36184001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):103, 47

               
               
               Conread position:114-288
               
               
               Cow position:chr22:5233221-5233046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:146
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-293
               
               
               Cow position:chr22:537185-537367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:151
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-293
               
               
               Cow position:chr22:20240757-20240576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):102, 97

               
               
               Conread position:114-293
               
               
               Cow position:chr22:27284115-27284297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:149
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-293
               
               
               Cow position:chr22:27309689-27309507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:147
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-293
               
               
               Cow position:chr22:44489971-44490151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:115-280
               
               
               Cow position:chr22:46581502-46581337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:139
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):101, 44

               
               
               Conread position:117-280
               
               
               Cow position:chr22:10909746-10909582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:136
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:118-251
               
               
               Cow position:chr22:46635626-46635492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:120-235
               
               
               Cow position:chr22:48004349-48004462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:94
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:124-365
               
               
               Cow position:chr22:1321687-1321921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:190
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):17, 112

               
               
               Conread position:139-294
               
               
               Cow position:chr22:1860848-1861004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:139-295
               
               
               Cow position:chr22:37266082-37266241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:142-293
               
               
               Cow position:chr22:16813998-16814150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:148-280
               
               
               Cow position:chr22:327050-326919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):69, 13

               
               
               Conread position:173-294
               
               
               Cow position:chr22:31936637-31936759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:190-287
               
               
               Cow position:chr22:13773056-13773153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:86
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):26, 52

               
               
               Conread position:193-293
               
               
               Cow position:chr22:37072915-37072815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:85
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):23, 15

               
               
               Conread position:195-292
               
               
               Cow position:chr22:24950261-24950359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:85
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:285-727
               
               
               Cow position:chr22:35907460-35907032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):336, 11

               
               
               Conread position:293-478
               
               
               Cow position:chr22:37132147-37132323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:293-649
               
               
               Cow position:chr22:46547834-46548170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 36

               
               
               Conread position:306-732
               
               
               Cow position:chr22:6503201-6502768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 42

               
               
               Conread position:350-732
               
               
               Cow position:chr22:1322124-1322489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 41

               
               
               Conread position:383-732
               
               
               Cow position:chr22:11782135-11781787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):61, 34

               
               
               Conread position:395-522
               
               
               Cow position:chr22:11031465-11031591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):113, 96

               
               
               Conread position:395-680
               
               
               Cow position:chr22:8740404-8740137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):113, 68

               
               
               Conread position:443-732
               
               
               Cow position:chr22:44475955-44476237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):69, 54

               
               
               Conread position:477-728
               
               
               Cow position:chr22:11031868-11032113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:483-732
               
               
               Cow position:chr22:310513-310751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):25, 35

               
               
               Conread position:485-727
               
               
               Cow position:chr22:1269669-1269432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):23, 61

               
               
               Conread position:507-718
               
               
               Cow position:chr22:37132574-37132770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):188, 98

               
               
               Conread position:604-732
               
               
               Cow position:chr22:34599644-34599771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):42, 15

               
               
               Conread position:626-727
               
               
               Cow position:chr22:560442-560343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:87
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:626-727
               
               
               Cow position:chr22:46853605-46853704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:84
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:630-732
               
               
               Cow position:chr22:17328472-17328373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:86
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:630-732
               
               
               Cow position:chr22:39469256-39469156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:85
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:632-727
               
               
               Cow position:chr22:36184022-36184118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:81
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:632-732
               
               
               Cow position:chr22:1522277-1522377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:82
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:634-719
               
               
               Cow position:chr22:326902-326817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:86
               
               
               Alignm identity:75
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:95-206
               
               
               Cow position:chr23:4816142-4816251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:89
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:95-248
               
               
               Cow position:chr23:22147183-22147031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):121, 12

               
               
               Conread position:95-251
               
               
               Cow position:chr23:2524130-2523975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-251
               
               
               Cow position:chr23:2782365-2782214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-251
               
               
               Cow position:chr23:5874707-5874560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:95-269
               
               
               Cow position:chr23:31595169-31594996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-271
               
               
               Cow position:chr23:20156150-20155973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):93, 24

               
               
               Conread position:95-280
               
               
               Cow position:chr23:4888742-4888924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):129, 17

               
               
               Conread position:95-292
               
               
               Cow position:chr23:4277021-4277219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:164
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 12

               
               
               Conread position:95-293
               
               
               Cow position:chr23:28217357-28217556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:161
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):121, 15

               
               
               Conread position:95-294
               
               
               Cow position:chr23:988579-988383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:159
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr23:2027052-2026854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:159
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr23:2574603-2574800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:163
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 15

               
               
               Conread position:95-294
               
               
               Cow position:chr23:2765386-2765188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:169
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr23:4510144-4510342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):109, 12

               
               
               Conread position:95-294
               
               
               Cow position:chr23:15525677-15525875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):121, 14

               
               
               Conread position:95-294
               
               
               Cow position:chr23:28913464-28913658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr23:29452253-29452053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:166
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 14

               
               
               Conread position:95-294
               
               
               Cow position:chr23:30636234-30636036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):76, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr23:31591736-31591537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:169
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr23:36031306-36031107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-301
               
               
               Cow position:chr23:25683994-25683792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:170
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 14

               
               
               Conread position:95-309
               
               
               Cow position:chr23:20302280-20302490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):121, 12

               
               
               Conread position:95-317
               
               
               Cow position:chr23:14965685-14965464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:167
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-322
               
               
               Cow position:chr23:2313171-2312940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:184
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):121, 17

               
               
               Conread position:95-342
               
               
               Cow position:chr23:4434526-4434767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):41, 14

               
               
               Conread position:95-342
               
               
               Cow position:chr23:16616782-16616531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 19

               
               
               Conread position:95-385
               
               
               Cow position:chr23:38578341-38578631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 21

               
               
               Conread position:96-288
               
               
               Cow position:chr23:19950515-19950324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):120, 21

               
               
               Conread position:96-292
               
               
               Cow position:chr23:8980252-8980057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:161
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):120, 21

               
               
               Conread position:96-316
               
               
               Cow position:chr23:2795497-2795279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):107, 21

               
               
               Conread position:96-365
               
               
               Cow position:chr23:19332339-19332077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:96-371
               
               
               Cow position:chr23:16615928-16615657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 21

               
               
               Conread position:96-385
               
               
               Cow position:chr23:22875605-22875330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:97-280
               
               
               Cow position:chr23:4359899-4360081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:150
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):119, 20

               
               
               Conread position:97-293
               
               
               Cow position:chr23:31446884-31447079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):119, 12

               
               
               Conread position:97-490
               
               
               Cow position:chr23:29474488-29474100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 20

               
               
               Conread position:109-366
               
               
               Cow position:chr23:4752073-4752323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):107, 14

               
               
               Conread position:112-234
               
               
               Cow position:chr23:3013728-3013851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-280
               
               
               Cow position:chr23:967263-967099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):104, 15

               
               
               Conread position:112-280
               
               
               Cow position:chr23:27399586-27399754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:112-290
               
               
               Cow position:chr23:15177156-15177332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):104, 86

               
               
               Conread position:112-294
               
               
               Cow position:chr23:2716470-2716653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-294
               
               
               Cow position:chr23:4640542-4640359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:112-294
               
               
               Cow position:chr23:19489624-19489807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-317
               
               
               Cow position:chr23:2757676-2757882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:158
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-319
               
               
               Cow position:chr23:5779005-5778797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:165
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-322
               
               
               Cow position:chr23:33699216-33699419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):106, 86

               
               
               Conread position:112-332
               
               
               Cow position:chr23:3881623-3881400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:169
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:113-294
               
               
               Cow position:chr23:15219809-15219626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:115-399
               
               
               Cow position:chr23:1327389-1327104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 112

               
               
               Conread position:117-295
               
               
               Cow position:chr23:7273717-7273897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:158
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:127-346
               
               
               Cow position:chr23:14974467-14974244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):14, 154

               
               
               Conread position:142-294
               
               
               Cow position:chr23:11778599-11778753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:150-371
               
               
               Cow position:chr23:31650790-31650573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):114, 54

               
               
               Conread position:192-445
               
               
               Cow position:chr23:1402719-1402471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 34

               
               
               Conread position:383-695
               
               
               Cow position:chr23:38578720-38579001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):307, 32

               
               
               Conread position:414-706
               
               
               Cow position:chr23:37738457-37738745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:195
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):111, 20

               
               
               Conread position:442-722
               
               
               Cow position:chr23:16615350-16615080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:204
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):66, 49

               
               
               Conread position:470-704
               
               
               Cow position:chr23:31650110-31649878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):27, 77

               
               
               Conread position:493-727
               
               
               Cow position:chr23:1402362-1402138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):15, 29

               
               
               Conread position:509-724
               
               
               Cow position:chr23:22875160-22874964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:510-727
               
               
               Cow position:chr23:7046512-7046298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):131, 31

               
               
               Conread position:511-719
               
               
               Cow position:chr23:4752753-4752951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):111, 47

               
               
               Conread position:515-722
               
               
               Cow position:chr23:2341240-2341445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):45, 35

               
               
               Conread position:524-722
               
               
               Cow position:chr23:9545739-9545936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):87, 44

               
               
               Conread position:528-727
               
               
               Cow position:chr23:2026956-2026757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):40, 11

               
               
               Conread position:606-732
               
               
               Cow position:chr23:15525854-15525978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:103
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:608-727
               
               
               Cow position:chr23:25683797-25683679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:104
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:626-727
               
               
               Cow position:chr23:11778751-11778850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:85
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-731
               
               
               Cow position:chr23:14965489-14965386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:92
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr23:4640361-4640257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr23:30636038-30635934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr23:36031114-36031009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:86
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:630-732
               
               
               Cow position:chr23:29452053-29451950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:90
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:632-732
               
               
               Cow position:chr23:4510343-4510444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:86
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:632-732
               
               
               Cow position:chr23:16616580-16616479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:87
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:634-719
               
               
               Cow position:chr23:4434721-4434806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:86
               
               
               Alignm identity:75
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:91-301
               
               
               Cow position:chr24:37217149-37217356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:166
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:92-371
               
               
               Cow position:chr24:7091448-7091172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):9, 26

               
               
               Conread position:92-717
               
               
               Cow position:chr24:16649168-16648547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:637
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 25

               
               
               Conread position:92-727
               
               
               Cow position:chr24:36559937-36559314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:644
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 25

               
               
               Conread position:94-293
               
               
               Cow position:chr24:6660457-6660249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):47, 11

               
               
               Conread position:95-234
               
               
               Cow position:chr24:22952289-22952427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):121, 21

               
               
               Conread position:95-270
               
               
               Cow position:chr24:4415376-4415202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):46, 22

               
               
               Conread position:95-288
               
               
               Cow position:chr24:6084170-6084362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:153
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-290
               
               
               Cow position:chr24:16084507-16084312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):95, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr24:148466-148269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):119, 10

               
               
               Conread position:95-293
               
               
               Cow position:chr24:14585229-14585426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:166
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 21

               
               
               Conread position:95-293
               
               
               Cow position:chr24:17696820-17696628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr24:6145522-6145719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:160
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):121, 10

               
               
               Conread position:95-294
               
               
               Cow position:chr24:12086351-12086549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:157
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr24:12335621-12335424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr24:29187436-29187634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:157
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-311
               
               
               Cow position:chr24:6335843-6336048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:95-311
               
               
               Cow position:chr24:12237207-12237419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):73, 22

               
               
               Conread position:95-315
               
               
               Cow position:chr24:33739184-33738969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-350
               
               
               Cow position:chr24:17303460-17303211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):43, 19

               
               
               Conread position:95-364
               
               
               Cow position:chr24:14384460-14384193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:196
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):121, 14

               
               
               Conread position:95-366
               
               
               Cow position:chr24:8152852-8152583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):41, 15

               
               
               Conread position:95-384
               
               
               Cow position:chr24:1447709-1447996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 21

               
               
               Conread position:95-398
               
               
               Cow position:chr24:35841470-35841165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 28

               
               
               Conread position:97-251
               
               
               Cow position:chr24:44017701-44017854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):119, 12

               
               
               Conread position:97-280
               
               
               Cow position:chr24:12485162-12484980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):119, 12

               
               
               Conread position:97-293
               
               
               Cow position:chr24:9188576-9188380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):44, 12

               
               
               Conread position:97-293
               
               
               Cow position:chr24:40549029-40549224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:154
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):119, 12

               
               
               Conread position:98-234
               
               
               Cow position:chr24:13524260-13524395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):116, 19

               
               
               Conread position:98-680
               
               
               Cow position:chr24:12797612-12797039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:585
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 19

               
               
               Conread position:112-293
               
               
               Cow position:chr24:22793340-22793524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-294
               
               
               Cow position:chr24:19833553-19833736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:146
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:112-294
               
               
               Cow position:chr24:33933534-33933717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-319
               
               
               Cow position:chr24:12113878-12113665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):54, 66

               
               
               Conread position:112-333
               
               
               Cow position:chr24:35838448-35838224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 75

               
               
               Conread position:112-351
               
               
               Cow position:chr24:12288221-12287988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):104, 45

               
               
               Conread position:114-274
               
               
               Cow position:chr24:6645873-6646034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-290
               
               
               Cow position:chr24:7061559-7061736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:144
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-293
               
               
               Cow position:chr24:5993059-5992877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-293
               
               
               Cow position:chr24:6434410-6434590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:146
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-293
               
               
               Cow position:chr24:8030321-8030501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:115-324
               
               
               Cow position:chr24:6024924-6024718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:118-324
               
               
               Cow position:chr24:9092108-9091902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):98, 70

               
               
               Conread position:126-361
               
               
               Cow position:chr24:16376707-16376934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 40

               
               
               Conread position:127-263
               
               
               Cow position:chr24:15392155-15392020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):89, 50

               
               
               Conread position:147-385
               
               
               Cow position:chr24:14333246-14333484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):66, 108

               
               
               Conread position:163-293
               
               
               Cow position:chr24:43813983-43814116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:184-294
               
               
               Cow position:chr24:12130733-12130623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:90
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):32, 95

               
               
               Conread position:307-727
               
               
               Cow position:chr24:12206273-12205860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):201, 18

               
               
               Conread position:347-727
               
               
               Cow position:chr24:6335918-6336297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 21

               
               
               Conread position:368-727
               
               
               Cow position:chr24:14333558-14333913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):17, 8

               
               
               Conread position:374-724
               
               
               Cow position:chr24:17313439-17313098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 33

               
               
               Conread position:383-726
               
               
               Cow position:chr24:13302457-13302095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:254
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):100, 17

               
               
               Conread position:383-732
               
               
               Cow position:chr24:36708363-36708717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 36

               
               
               Conread position:417-722
               
               
               Cow position:chr24:38637689-38637976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):143, 61

               
               
               Conread position:434-732
               
               
               Cow position:chr24:7091014-7090719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):11, 15

               
               
               Conread position:458-727
               
               
               Cow position:chr24:12237397-12237680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):53, 32

               
               
               Conread position:463-732
               
               
               Cow position:chr24:6669964-6669696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):176, 46

               
               
               Conread position:491-726
               
               
               Cow position:chr24:16472102-16472342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):14, 64

               
               
               Conread position:516-732
               
               
               Cow position:chr24:32332258-32332473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:528-732
               
               
               Cow position:chr24:148370-148166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):40, 11

               
               
               Conread position:610-727
               
               
               Cow position:chr24:12232644-12232527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:101
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:610-732
               
               
               Cow position:chr24:37217347-37217465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:626-727
               
               
               Cow position:chr24:12335426-12335328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:85
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr24:12086547-12086652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr24:19833734-19833838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:630-732
               
               
               Cow position:chr24:17696625-17696525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:85
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:91-251
               
               
               Cow position:chr25:20629676-20629830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:92-287
               
               
               Cow position:chr25:11375242-11375048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:162
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 20

               
               
               Conread position:95-280
               
               
               Cow position:chr25:18889907-18889722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):110, 22

               
               
               Conread position:95-281
               
               
               Cow position:chr25:9544172-9544355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:156
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):121, 17

               
               
               Conread position:95-287
               
               
               Cow position:chr25:27022457-27022265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr25:13781139-13781336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:156
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr25:18194989-18194790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:160
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr25:25506759-25506955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:159
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):122, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr25:32580075-32580273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr25:34014377-34014182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):121, 16

               
               
               Conread position:95-293
               
               
               Cow position:chr25:34346908-34346711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr25:14016274-14016472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:164
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr25:17468589-17468395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:165
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):104, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr25:18275724-18275521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):79, 24

               
               
               Conread position:95-294
               
               
               Cow position:chr25:22147604-22147802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr25:26279366-26279566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-313
               
               
               Cow position:chr25:36240665-36240875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:171
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:95-386
               
               
               Cow position:chr25:23345230-23344952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):42, 10

               
               
               Conread position:96-294
               
               
               Cow position:chr25:18303511-18303707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:156
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):113, 21

               
               
               Conread position:96-294
               
               
               Cow position:chr25:34656336-34656139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:165
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 21

               
               
               Conread position:96-366
               
               
               Cow position:chr25:12759489-12759221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 8

               
               
               Conread position:97-310
               
               
               Cow position:chr25:33665762-33665552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:168
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):119, 20

               
               
               Conread position:97-377
               
               
               Cow position:chr25:19288228-19287958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):119, 14

               
               
               Conread position:97-385
               
               
               Cow position:chr25:11933419-11933132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):237, 20

               
               
               Conread position:112-240
               
               
               Cow position:chr25:18027501-18027372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:112-280
               
               
               Cow position:chr25:12942576-12942407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-288
               
               
               Cow position:chr25:20494473-20494650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):104, 143

               
               
               Conread position:112-294
               
               
               Cow position:chr25:8675040-8675223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:148
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:114-279
               
               
               Cow position:chr25:26922343-26922508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):102, 137

               
               
               Conread position:114-293
               
               
               Cow position:chr25:19917210-19917392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-293
               
               
               Cow position:chr25:35362303-35362123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:146
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-294
               
               
               Cow position:chr25:18060474-18060295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:148
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):102, 60

               
               
               Conread position:118-279
               
               
               Cow position:chr25:20776768-20776610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):42, 72

               
               
               Conread position:122-293
               
               
               Cow position:chr25:17589420-17589246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:123-385
               
               
               Cow position:chr25:33243956-33244206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):93, 16

               
               
               Conread position:129-385
               
               
               Cow position:chr25:18093151-18093407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 193

               
               
               Conread position:142-308
               
               
               Cow position:chr25:17560478-17560310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:143-293
               
               
               Cow position:chr25:6172058-6172209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:178-316
               
               
               Cow position:chr25:24659444-24659584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:383-726
               
               
               Cow position:chr25:23344862-23344497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:252
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):105, 37

               
               
               Conread position:383-732
               
               
               Cow position:chr25:11933048-11932693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:448-727
               
               
               Cow position:chr25:18254834-18254575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:188
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:492-722
               
               
               Cow position:chr25:18094371-18094599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:176
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):23, 77

               
               
               Conread position:517-732
               
               
               Cow position:chr25:20494926-20495137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:552-727
               
               
               Cow position:chr25:33665457-33665276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):29, 101

               
               
               Conread position:613-726
               
               
               Cow position:chr25:18274692-18274579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):6, 29

               
               
               Conread position:626-732
               
               
               Cow position:chr25:12942395-12942291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr25:18889710-18889606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:632-727
               
               
               Cow position:chr25:24659561-24659657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:83
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:2-281
               
               
               Cow position:chr26:12656311-12656587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 40

               
               
               Conread position:95-279
               
               
               Cow position:chr26:3691930-3692104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-280
               
               
               Cow position:chr26:9563227-9563044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-280
               
               
               Cow position:chr26:19351384-19351200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:150
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-289
               
               
               Cow position:chr26:18852350-18852542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:154
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-289
               
               
               Cow position:chr26:18855219-18855411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:154
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr26:2198756-2198955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:166
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr26:2352228-2352031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr26:5675289-5675486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):121, 20

               
               
               Conread position:95-293
               
               
               Cow position:chr26:11253926-11253729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:155
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr26:12588434-12588238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):46, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr26:15144630-15144431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:162
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr26:6849307-6849109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:157
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):121, 12

               
               
               Conread position:95-294
               
               
               Cow position:chr26:17396801-17396603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:158
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-359
               
               
               Cow position:chr26:8282931-8282670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):122, 22

               
               
               Conread position:95-369
               
               
               Cow position:chr26:12666236-12666504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-383
               
               
               Cow position:chr26:9849795-9849509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 22

               
               
               Conread position:95-383
               
               
               Cow position:chr26:9853306-9853020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 22

               
               
               Conread position:96-251
               
               
               Cow position:chr26:23603636-23603482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:134
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):118, 21

               
               
               Conread position:105-308
               
               
               Cow position:chr26:20262992-20263192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):108, 12

               
               
               Conread position:112-280
               
               
               Cow position:chr26:30589232-30589058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):21, 111

               
               
               Conread position:112-340
               
               
               Cow position:chr26:4605038-4604809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):171, 20

               
               
               Conread position:112-698
               
               
               Cow position:chr26:9845433-9844875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 155

               
               
               Conread position:114-219
               
               
               Cow position:chr26:4334292-4334398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:86
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-278
               
               
               Cow position:chr26:3030682-3030517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:137
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-280
               
               
               Cow position:chr26:8918997-8919164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-294
               
               
               Cow position:chr26:9112885-9113067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-294
               
               
               Cow position:chr26:12574262-12574081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:157
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:120-293
               
               
               Cow position:chr26:30782896-30783072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:127-293
               
               
               Cow position:chr26:8870042-8870211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:149-311
               
               
               Cow position:chr26:20255382-20255538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):67, 79

               
               
               Conread position:172-293
               
               
               Cow position:chr26:4806356-4806232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:458-723
               
               
               Cow position:chr26:20255515-20255772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 39

               
               
               Conread position:459-690
               
               
               Cow position:chr26:12656607-12656841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):49, 25

               
               
               Conread position:507-732
               
               
               Cow position:chr26:4334099-4333874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:177
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):106, 58

               
               
               Conread position:626-732
               
               
               Cow position:chr26:17396605-17396501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr26:19351188-19351084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:638-728
               
               
               Cow position:chr26:23603174-23603083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:92
               
               
               Alignm identity:79
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:67-510
               
               
               Cow position:chr27:8561578-8562019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 39

               
               
               Conread position:92-288
               
               
               Cow position:chr27:16439389-16439587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:167
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:95-244
               
               
               Cow position:chr27:2364817-2364966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-261
               
               
               Cow position:chr27:15638288-15638125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-276
               
               
               Cow position:chr27:26227360-26227535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):121, 21

               
               
               Conread position:95-280
               
               
               Cow position:chr27:893274-893458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):120, 9

               
               
               Conread position:95-280
               
               
               Cow position:chr27:1209419-1209602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:151
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr27:9993138-9992938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):110, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr27:16432487-16432681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):121, 24

               
               
               Conread position:95-294
               
               
               Cow position:chr27:25002469-25002270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:167
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr27:27662967-27663160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:95-315
               
               
               Cow position:chr27:27753129-27752911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:172
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-371
               
               
               Cow position:chr27:26034988-26034720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):41, 21

               
               
               Conread position:95-722
               
               
               Cow position:chr27:26555937-26555311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:642
               
               
               Alignm identity:475
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:97-293
               
               
               Cow position:chr27:16034325-16034128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:160
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):119, 15

               
               
               Conread position:99-294
               
               
               Cow position:chr27:27051747-27051949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:164
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):67, 15

               
               
               Conread position:102-294
               
               
               Cow position:chr27:14460384-14460191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:109-293
               
               
               Cow position:chr27:15541408-15541593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:112-279
               
               
               Cow position:chr27:26324897-26325065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-294
               
               
               Cow position:chr27:5910945-5911128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-294
               
               
               Cow position:chr27:15277987-15277808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:150
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:112-319
               
               
               Cow position:chr27:25804813-25804601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):103, 72

               
               
               Conread position:115-287
               
               
               Cow position:chr27:28078533-28078706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):34, 56

               
               
               Conread position:122-377
               
               
               Cow position:chr27:22316674-22316930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):24, 165

               
               
               Conread position:142-259
               
               
               Cow position:chr27:23335292-23335409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:96
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):74, 30

               
               
               Conread position:515-727
               
               
               Cow position:chr27:1138526-1138745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):29, 82

               
               
               Conread position:545-732
               
               
               Cow position:chr27:8567901-8568087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):70, 20

               
               
               Conread position:553-732
               
               
               Cow position:chr27:15638178-15638003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):9, 26

               
               
               Conread position:626-732
               
               
               Cow position:chr27:893470-893574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:87
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr27:9992940-9992836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr27:14460193-14460090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:91
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:630-732
               
               
               Cow position:chr27:23335430-23335530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:87
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:75-414
               
               
               Cow position:chr28:10619025-10618695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 44

               
               
               Conread position:92-732
               
               
               Cow position:chr28:5797540-5798157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:647
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 25

               
               
               Conread position:93-293
               
               
               Cow position:chr28:15377882-15377684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):123, 12

               
               
               Conread position:95-249
               
               
               Cow position:chr28:15920354-15920200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):85, 22

               
               
               Conread position:95-262
               
               
               Cow position:chr28:1504963-1505129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:140
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):121, 14

               
               
               Conread position:95-262
               
               
               Cow position:chr28:17667402-17667236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-262
               
               
               Cow position:chr28:22261039-22260873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):121, 25

               
               
               Conread position:95-274
               
               
               Cow position:chr28:1931873-1931695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:150
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-279
               
               
               Cow position:chr28:24587546-24587729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-280
               
               
               Cow position:chr28:5751595-5751410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):99, 22

               
               
               Conread position:95-281
               
               
               Cow position:chr28:7901466-7901658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:158
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):113, 17

               
               
               Conread position:95-287
               
               
               Cow position:chr28:9136939-9136749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:158
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr28:782506-782703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr28:6780222-6780023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:162
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):121, 14

               
               
               Conread position:95-293
               
               
               Cow position:chr28:7740597-7740789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):73, 21

               
               
               Conread position:95-293
               
               
               Cow position:chr28:12410112-12409917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr28:17324239-17324036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):60, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr28:2592026-2592224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:164
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr28:9954244-9954442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:162
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr28:10581875-10581675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:160
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr28:12150422-12150613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:95-294
               
               
               Cow position:chr28:14705560-14705362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):47, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr28:18520352-18520150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):59, 14

               
               
               Conread position:95-294
               
               
               Cow position:chr28:24667690-24667888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:164
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 19

               
               
               Conread position:95-294
               
               
               Cow position:chr28:29819845-29820043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):120, 21

               
               
               Conread position:95-294
               
               
               Cow position:chr28:32792268-32792071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:95-294
               
               
               Cow position:chr28:33252425-33252621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):121, 21

               
               
               Conread position:95-365
               
               
               Cow position:chr28:29092873-29092612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-365
               
               
               Cow position:chr28:34649055-34649323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:197
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):121, 12

               
               
               Conread position:95-366
               
               
               Cow position:chr28:10463041-10462769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:198
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):41, 22

               
               
               Conread position:95-521
               
               
               Cow position:chr28:2989606-2989175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 22

               
               
               Conread position:95-723
               
               
               Cow position:chr28:7790175-7789549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:639
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 22

               
               
               Conread position:95-727
               
               
               Cow position:chr28:10071096-10071690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-727
               
               
               Cow position:chr28:21359113-21359744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:639
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-732
               
               
               Cow position:chr28:5812803-5813420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:639
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 24

               
               
               Conread position:96-294
               
               
               Cow position:chr28:1167770-1167572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:157
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):41, 21

               
               
               Conread position:96-294
               
               
               Cow position:chr28:7002102-7002299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:159
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):120, 20

               
               
               Conread position:96-332
               
               
               Cow position:chr28:8721335-8721101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 21

               
               
               Conread position:97-251
               
               
               Cow position:chr28:22828127-22828282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):119, 19

               
               
               Conread position:97-317
               
               
               Cow position:chr28:2724777-2724560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):119, 12

               
               
               Conread position:98-414
               
               
               Cow position:chr28:21325907-21326209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 19

               
               
               Conread position:99-294
               
               
               Cow position:chr28:1387279-1387091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):117, 18

               
               
               Conread position:107-332
               
               
               Cow position:chr28:15682242-15682458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):109, 92

               
               
               Conread position:112-280
               
               
               Cow position:chr28:2083722-2083891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):24, 93

               
               
               Conread position:112-280
               
               
               Cow position:chr28:5114685-5114516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-280
               
               
               Cow position:chr28:22233271-22233104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):104, 59

               
               
               Conread position:112-281
               
               
               Cow position:chr28:13490277-13490447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:147
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-293
               
               
               Cow position:chr28:1814741-1814559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-293
               
               
               Cow position:chr28:9155153-9154977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):104, 62

               
               
               Conread position:112-294
               
               
               Cow position:chr28:8378695-8378878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-294
               
               
               Cow position:chr28:17388608-17388791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-294
               
               
               Cow position:chr28:34594105-34594288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:113-293
               
               
               Cow position:chr28:13460097-13460278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:114-293
               
               
               Cow position:chr28:7822386-7822568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-293
               
               
               Cow position:chr28:13440748-13440568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:146
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-293
               
               
               Cow position:chr28:14750676-14750857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):102, 31

               
               
               Conread position:114-294
               
               
               Cow position:chr28:3192663-3192482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-294
               
               
               Cow position:chr28:4380716-4380535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:156
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-294
               
               
               Cow position:chr28:5937609-5937785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):102, 84

               
               
               Conread position:114-331
               
               
               Cow position:chr28:485434-485208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-385
               
               
               Cow position:chr28:2846046-2845780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:195
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):102, 176

               
               
               Conread position:115-290
               
               
               Cow position:chr28:1953259-1953435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:142
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:121-265
               
               
               Cow position:chr28:5565989-5566134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:121-293
               
               
               Cow position:chr28:30805552-30805379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:123-287
               
               
               Cow position:chr28:6539124-6538958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:146-293
               
               
               Cow position:chr28:26426091-26425943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:148-295
               
               
               Cow position:chr28:24652952-24652806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):68, 10

               
               
               Conread position:180-381
               
               
               Cow position:chr28:11357519-11357320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:164
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 162

               
               
               Conread position:212-665
               
               
               Cow position:chr28:7817366-7817810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 120

               
               
               Conread position:225-732
               
               
               Cow position:chr28:10498087-10497604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):244, 38

               
               
               Conread position:237-671
               
               
               Cow position:chr28:5764499-5764913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 107

               
               
               Conread position:297-660
               
               
               Cow position:chr28:28117808-28118172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 31

               
               
               Conread position:352-603
               
               
               Cow position:chr28:11357017-11356770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:189
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):156, 12

               
               
               Conread position:383-727
               
               
               Cow position:chr28:29092504-29092160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):61, 29

               
               
               Conread position:443-719
               
               
               Cow position:chr28:15586230-15586513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):62, 55

               
               
               Conread position:443-722
               
               
               Cow position:chr28:10647262-10646985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):45, 121

               
               
               Conread position:443-727
               
               
               Cow position:chr28:14913642-14913922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):133, 10

               
               
               Conread position:448-684
               
               
               Cow position:chr28:24704363-24704602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:187
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:453-722
               
               
               Cow position:chr28:6656388-6656125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):12, 45

               
               
               Conread position:503-727
               
               
               Cow position:chr28:10617638-10617425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):5, 66

               
               
               Conread position:509-732
               
               
               Cow position:chr28:2989048-2988830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):161, 22

               
               
               Conread position:510-732
               
               
               Cow position:chr28:32330510-32330293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):154, 42

               
               
               Conread position:518-722
               
               
               Cow position:chr28:8721152-8720950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):22, 48

               
               
               Conread position:545-732
               
               
               Cow position:chr28:3020517-3020339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):13, 74

               
               
               Conread position:546-732
               
               
               Cow position:chr28:24652901-24652709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:554-711
               
               
               Cow position:chr28:14946870-14947026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:133
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:615-727
               
               
               Cow position:chr28:2886608-2886718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:90
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:619-732
               
               
               Cow position:chr28:22260851-22260740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:96
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:626-727
               
               
               Cow position:chr28:32792073-32791974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:87
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr28:1167574-1167471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:91
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr28:1505171-1505276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr28:5113991-5113887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:89
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr28:5566452-5566556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:87
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr28:5937783-5937887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:87
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr28:7002297-7002401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:87
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr28:10581677-10581574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr28:17388789-17388894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr28:29820041-29820145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:87
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr28:33252619-33252723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr28:34594286-34594390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:89
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:630-727
               
               
               Cow position:chr28:2083905-2084000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:85
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:630-732
               
               
               Cow position:chr28:1814556-1814456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:90
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:632-727
               
               
               Cow position:chr28:17666987-17666892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:82
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):5, 41

               
               
               Conread position:92-357
               
               
               Cow position:chr29:30811603-30811859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 25

               
               
               Conread position:95-259
               
               
               Cow position:chr29:10848015-10847852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:141
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-270
               
               
               Cow position:chr29:17662981-17663155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):46, 22

               
               
               Conread position:95-271
               
               
               Cow position:chr29:40502903-40502729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):121, 19

               
               
               Conread position:95-287
               
               
               Cow position:chr29:16770200-16770392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:161
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr29:48401-48206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:95-293
               
               
               Cow position:chr29:610535-610336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:163
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr29:669979-669781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:159
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr29:7431138-7430945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):121, 14

               
               
               Conread position:95-293
               
               
               Cow position:chr29:35296952-35297150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:159
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr29:2099922-2100120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr29:2466257-2466059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):121, 24

               
               
               Conread position:95-294
               
               
               Cow position:chr29:2689979-2690175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr29:5957681-5957879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):121, 21

               
               
               Conread position:95-294
               
               
               Cow position:chr29:11049356-11049553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:166
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 24

               
               
               Conread position:95-294
               
               
               Cow position:chr29:12796288-12796107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:95-294
               
               
               Cow position:chr29:14585999-14586197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:158
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):119, 24

               
               
               Conread position:95-294
               
               
               Cow position:chr29:25932467-25932269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:156
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr29:26164745-26164547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr29:35196744-35196939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr29:38227057-38227255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):121, 21

               
               
               Conread position:95-294
               
               
               Cow position:chr29:39079635-39079437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr29:43322637-43322829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr29:43365915-43365727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:95-305
               
               
               Cow position:chr29:2750335-2750135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-317
               
               
               Cow position:chr29:410448-410227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-317
               
               
               Cow position:chr29:23975917-23976138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):121, 21

               
               
               Conread position:95-362
               
               
               Cow position:chr29:1715319-1715583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):118, 22

               
               
               Conread position:95-371
               
               
               Cow position:chr29:104644-104911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 14

               
               
               Conread position:95-385
               
               
               Cow position:chr29:15950114-15949828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:211
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):122, 24

               
               
               Conread position:96-293
               
               
               Cow position:chr29:34799731-34799533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):119, 19

               
               
               Conread position:97-293
               
               
               Cow position:chr29:34925558-34925753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:154
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):119, 12

               
               
               Conread position:97-316
               
               
               Cow position:chr29:9643680-9643459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):60, 20

               
               
               Conread position:110-316
               
               
               Cow position:chr29:21426934-21426731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:169
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):106, 125

               
               
               Conread position:112-262
               
               
               Cow position:chr29:42650376-42650529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-262
               
               
               Cow position:chr29:42802236-42802389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-286
               
               
               Cow position:chr29:14013557-14013731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):104, 27

               
               
               Conread position:112-286
               
               
               Cow position:chr29:14072854-14072680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):104, 27

               
               
               Conread position:112-293
               
               
               Cow position:chr29:20251252-20251433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):104, 59

               
               
               Conread position:112-294
               
               
               Cow position:chr29:6266409-6266226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-294
               
               
               Cow position:chr29:10823877-10823694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:112-294
               
               
               Cow position:chr29:19623155-19622972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:147
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-294
               
               
               Cow position:chr29:19653200-19653383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-294
               
               
               Cow position:chr29:32539902-32540085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:112-317
               
               
               Cow position:chr29:16022622-16022828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-332
               
               
               Cow position:chr29:45587268-45587048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):104, 208

               
               
               Conread position:112-366
               
               
               Cow position:chr29:803260-803006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):25, 11

               
               
               Conread position:112-386
               
               
               Cow position:chr29:24709156-24708884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:198
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):96, 30

               
               
               Conread position:113-294
               
               
               Cow position:chr29:10648158-10647976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:113-294
               
               
               Cow position:chr29:21543276-21543094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:151
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:114-234
               
               
               Cow position:chr29:32316135-32316256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-279
               
               
               Cow position:chr29:15894756-15894590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-279
               
               
               Cow position:chr29:19885164-19885330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:114-280
               
               
               Cow position:chr29:18856850-18856683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-280
               
               
               Cow position:chr29:27980823-27980658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):102, 130

               
               
               Conread position:114-292
               
               
               Cow position:chr29:45459807-45459989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:115-280
               
               
               Cow position:chr29:7840892-7841057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):101, 37

               
               
               Conread position:116-294
               
               
               Cow position:chr29:2841277-2841098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:147
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:116-294
               
               
               Cow position:chr29:27040673-27040497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:149
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):100, 116

               
               
               Conread position:119-293
               
               
               Cow position:chr29:13582171-13582344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):97, 24

               
               
               Conread position:121-293
               
               
               Cow position:chr29:31181516-31181691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:127-293
               
               
               Cow position:chr29:27250235-27250068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:142-497
               
               
               Cow position:chr29:5983082-5982734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 18

               
               
               Conread position:152-732
               
               
               Cow position:chr29:14086316-14085758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:585
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 45

               
               
               Conread position:163-280
               
               
               Cow position:chr29:15968718-15968600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:213-420
               
               
               Cow position:chr29:8331138-8330939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:217-375
               
               
               Cow position:chr29:13648882-13649036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):156, 73

               
               
               Conread position:304-459
               
               
               Cow position:chr29:2749931-2749782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:410-732
               
               
               Cow position:chr29:802876-802554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):101, 16

               
               
               Conread position:442-731
               
               
               Cow position:chr29:15949458-15949174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):178, 50

               
               
               Conread position:443-677
               
               
               Cow position:chr29:2951395-2951172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):229, 64

               
               
               Conread position:486-719
               
               
               Cow position:chr29:105159-105390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):22, 74

               
               
               Conread position:493-722
               
               
               Cow position:chr29:9617427-9617659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):21, 218

               
               
               Conread position:510-722
               
               
               Cow position:chr29:31488174-31488394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):52, 122

               
               
               Conread position:528-732
               
               
               Cow position:chr29:10823796-10823592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):40, 17

               
               
               Conread position:551-727
               
               
               Cow position:chr29:9643570-9643386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):10, 117

               
               
               Conread position:626-727
               
               
               Cow position:chr29:43322827-43322926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:86
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr29:410252-410149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr29:2100118-2100222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr29:2690173-2690277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr29:6266228-6266124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr29:10647978-10647874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr29:19653381-19653485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:87
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr29:23976113-23976217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr29:32540083-32540187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr29:39079439-39079334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:630-727
               
               
               Cow position:chr29:20251436-20251530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:84
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:630-732
               
               
               Cow position:chr29:7430942-7430842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:85
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:630-732
               
               
               Cow position:chr29:40502707-40502607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:85
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:632-727
               
               
               Cow position:chr29:21426754-21426658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:84
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:632-727
               
               
               Cow position:chr29:42650541-42650637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:84
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:632-727
               
               
               Cow position:chr29:42802401-42802497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:84
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:632-732
               
               
               Cow position:chr29:2841097-2840996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:86
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:77-523
               
               
               Cow position:chr3:48231034-48230592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 40

               
               
               Conread position:92-276
               
               
               Cow position:chr3:23291415-23291231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):105, 25

               
               
               Conread position:93-280
               
               
               Cow position:chr3:30314559-30314745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):123, 23

               
               
               Conread position:93-293
               
               
               Cow position:chr3:3523014-3523215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):123, 24

               
               
               Conread position:93-415
               
               
               Cow position:chr3:2908365-2908054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 21

               
               
               Conread position:95-207
               
               
               Cow position:chr3:54864704-54864594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:94
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:95-243
               
               
               Cow position:chr3:5047189-5047042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):119, 24

               
               
               Conread position:95-247
               
               
               Cow position:chr3:50915299-50915452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):46, 22

               
               
               Conread position:95-249
               
               
               Cow position:chr3:15989040-15988879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):67, 14

               
               
               Conread position:95-251
               
               
               Cow position:chr3:18356892-18356737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):115, 22

               
               
               Conread position:95-262
               
               
               Cow position:chr3:5883534-5883700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-269
               
               
               Cow position:chr3:70083657-70083486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:150
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-273
               
               
               Cow position:chr3:40157510-40157334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:153
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-274
               
               
               Cow position:chr3:30929638-30929815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):65, 15

               
               
               Conread position:95-278
               
               
               Cow position:chr3:19878653-19878835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:149
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-279
               
               
               Cow position:chr3:56340432-56340249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):121, 12

               
               
               Conread position:95-280
               
               
               Cow position:chr3:42432226-42432410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-280
               
               
               Cow position:chr3:68873759-68873576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:150
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-288
               
               
               Cow position:chr3:5829633-5829442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:161
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-288
               
               
               Cow position:chr3:42579972-42579782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:157
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-290
               
               
               Cow position:chr3:66890966-66890774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr3:2917456-2917655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):121, 14

               
               
               Conread position:95-293
               
               
               Cow position:chr3:6782379-6782578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr3:7158737-7158539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:160
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):121, 14

               
               
               Conread position:95-293
               
               
               Cow position:chr3:14439766-14439567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:164
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr3:19938880-19939078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:163
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr3:32623040-32622843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr3:36864364-36864167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr3:41211742-41211543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):119, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr3:46861308-46861109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):121, 14

               
               
               Conread position:95-293
               
               
               Cow position:chr3:49137545-49137348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):121, 12

               
               
               Conread position:95-293
               
               
               Cow position:chr3:49545212-49545015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):121, 21

               
               
               Conread position:95-293
               
               
               Cow position:chr3:64650620-64650820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr3:72630064-72630262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:160
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):47, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr3:75041173-75040978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr3:207166-206968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:163
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr3:2633920-2634113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:164
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:95-294
               
               
               Cow position:chr3:2654101-2654295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:163
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):53, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr3:18463592-18463396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr3:18542413-18542215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:161
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr3:18811498-18811693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:159
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):119, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr3:19756964-19756766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:156
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr3:23214067-23213869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr3:31354270-31354072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:165
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr3:31897982-31897784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:165
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr3:36881927-36881729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr3:45895563-45895365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):121, 12

               
               
               Conread position:95-294
               
               
               Cow position:chr3:45974492-45974690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):121, 12

               
               
               Conread position:95-294
               
               
               Cow position:chr3:53515608-53515806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr3:55229707-55229508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:162
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 17

               
               
               Conread position:95-294
               
               
               Cow position:chr3:57484734-57484537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:159
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr3:64017369-64017172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:157
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr3:66119650-66119848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:165
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 14

               
               
               Conread position:95-294
               
               
               Cow position:chr3:69933389-69933587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr3:78027415-78027217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:156
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-295
               
               
               Cow position:chr3:472527-472726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:169
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-311
               
               
               Cow position:chr3:58947453-58947665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 25

               
               
               Conread position:95-312
               
               
               Cow position:chr3:50127885-50127670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):102, 22

               
               
               Conread position:95-315
               
               
               Cow position:chr3:47081663-47081445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-317
               
               
               Cow position:chr3:21182689-21182471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-317
               
               
               Cow position:chr3:36127386-36127609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:172
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):120, 22

               
               
               Conread position:95-324
               
               
               Cow position:chr3:5954191-5953961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):119, 22

               
               
               Conread position:95-324
               
               
               Cow position:chr3:26949509-26949735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:175
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):121, 20

               
               
               Conread position:95-324
               
               
               Cow position:chr3:34396086-34395860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:175
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-325
               
               
               Cow position:chr3:10239644-10239869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):121, 24

               
               
               Conread position:95-332
               
               
               Cow position:chr3:5995702-5995464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):119, 22

               
               
               Conread position:95-332
               
               
               Cow position:chr3:45869222-45868983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 22

               
               
               Conread position:95-336
               
               
               Cow position:chr3:2710966-2710726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:155
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-357
               
               
               Cow position:chr3:21305186-21304925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):121, 14

               
               
               Conread position:95-366
               
               
               Cow position:chr3:77442878-77443139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-370
               
               
               Cow position:chr3:14754302-14754030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 21

               
               
               Conread position:95-371
               
               
               Cow position:chr3:34093453-34093177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 15

               
               
               Conread position:95-384
               
               
               Cow position:chr3:3980385-3980670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-385
               
               
               Cow position:chr3:45775093-45774815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):121, 15

               
               
               Conread position:95-473
               
               
               Cow position:chr3:6685456-6685818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:95-490
               
               
               Cow position:chr3:19802654-19803037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-732
               
               
               Cow position:chr3:64358173-64357549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:645
               
               
               Alignm identity:518
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:96-324
               
               
               Cow position:chr3:51940424-51940202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):120, 21

               
               
               Conread position:96-325
               
               
               Cow position:chr3:66620170-66620388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):120, 20

               
               
               Conread position:96-365
               
               
               Cow position:chr3:42631010-42631276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):120, 21

               
               
               Conread position:96-385
               
               
               Cow position:chr3:4027267-4027557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 23

               
               
               Conread position:96-732
               
               
               Cow position:chr3:52864477-52863841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:647
               
               
               Alignm identity:515
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 21

               
               
               Conread position:97-280
               
               
               Cow position:chr3:24314465-24314648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):119, 20

               
               
               Conread position:97-293
               
               
               Cow position:chr3:7168790-7168986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):119, 12

               
               
               Conread position:97-333
               
               
               Cow position:chr3:15178309-15178540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:184
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):97, 20

               
               
               Conread position:97-401
               
               
               Cow position:chr3:39326713-39327015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 23

               
               
               Conread position:100-342
               
               
               Cow position:chr3:19890987-19890746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):110, 17

               
               
               Conread position:108-280
               
               
               Cow position:chr3:49613971-49613798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:112-251
               
               
               Cow position:chr3:40997982-40998123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-262
               
               
               Cow position:chr3:13518271-13518133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):102, 37

               
               
               Conread position:112-264
               
               
               Cow position:chr3:19944067-19944213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):104, 37

               
               
               Conread position:112-280
               
               
               Cow position:chr3:594585-594755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:112-293
               
               
               Cow position:chr3:40823397-40823579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:146
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-293
               
               
               Cow position:chr3:59861376-59861558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:112-294
               
               
               Cow position:chr3:34030889-34030706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:149
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-294
               
               
               Cow position:chr3:66638750-66638933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:152
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-311
               
               
               Cow position:chr3:77423691-77423882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):188, 27

               
               
               Conread position:112-317
               
               
               Cow position:chr3:48060822-48060616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-324
               
               
               Cow position:chr3:49677796-49678010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:165
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-349
               
               
               Cow position:chr3:26837752-26837519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 31

               
               
               Conread position:112-357
               
               
               Cow position:chr3:32842438-32842195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):41, 89

               
               
               Conread position:112-362
               
               
               Cow position:chr3:19722612-19722362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):104, 41

               
               
               Conread position:112-377
               
               
               Cow position:chr3:54783549-54783821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):29, 265

               
               
               Conread position:112-528
               
               
               Cow position:chr3:29595204-29595617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 214

               
               
               Conread position:112-530
               
               
               Cow position:chr3:63004723-63004318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 166

               
               
               Conread position:112-727
               
               
               Cow position:chr3:24591612-24591034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 46

               
               
               Conread position:112-732
               
               
               Cow position:chr3:66990796-66991385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):396, 100

               
               
               Conread position:113-294
               
               
               Cow position:chr3:77474771-77474955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:152
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:113-334
               
               
               Cow position:chr3:9716825-9717047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):199, 99

               
               
               Conread position:114-293
               
               
               Cow position:chr3:18859428-18859608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):102, 40

               
               
               Conread position:114-293
               
               
               Cow position:chr3:22335900-22336082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:150
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-293
               
               
               Cow position:chr3:29331265-29331085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:146
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-293
               
               
               Cow position:chr3:45032753-45032935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:150
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-293
               
               
               Cow position:chr3:56321328-56321509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):102, 49

               
               
               Conread position:114-293
               
               
               Cow position:chr3:64028073-64027894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:146
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):102, 9

               
               
               Conread position:114-293
               
               
               Cow position:chr3:68699957-68699781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):102, 45

               
               
               Conread position:114-319
               
               
               Cow position:chr3:47179190-47178981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):102, 9

               
               
               Conread position:114-342
               
               
               Cow position:chr3:3054610-3054833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 18

               
               
               Conread position:115-385
               
               
               Cow position:chr3:36098706-36098434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 24

               
               
               Conread position:122-461
               
               
               Cow position:chr3:14632678-14632342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 112

               
               
               Conread position:127-317
               
               
               Cow position:chr3:26822484-26822291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:159
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):89, 188

               
               
               Conread position:130-293
               
               
               Cow position:chr3:36117691-36117855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:132-294
               
               
               Cow position:chr3:53713078-53713241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:136
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:133-294
               
               
               Cow position:chr3:7481201-7481039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:143-293
               
               
               Cow position:chr3:40340071-40339918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:144-371
               
               
               Cow position:chr3:56097567-56097787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):215, 82

               
               
               Conread position:179-288
               
               
               Cow position:chr3:37969124-37969234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:191-336
               
               
               Cow position:chr3:63241688-63241542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:383-623
               
               
               Cow position:chr3:6879064-6878824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):172, 7

               
               
               Conread position:383-681
               
               
               Cow position:chr3:36127744-36128049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:213
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):100, 66

               
               
               Conread position:383-722
               
               
               Cow position:chr3:15178671-15178984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:383-722
               
               
               Cow position:chr3:32842092-32841741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):40, 24

               
               
               Conread position:383-732
               
               
               Cow position:chr3:24643137-24643484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:241
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):95, 29

               
               
               Conread position:383-732
               
               
               Cow position:chr3:49272549-49272196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):61, 90

               
               
               Conread position:383-732
               
               
               Cow position:chr3:49333741-49334079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:234
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):120, 52

               
               
               Conread position:411-731
               
               
               Cow position:chr3:46015632-46015934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):250, 72

               
               
               Conread position:434-731
               
               
               Cow position:chr3:2907759-2907476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:225
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):65, 32

               
               
               Conread position:443-732
               
               
               Cow position:chr3:12680023-12679728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):158, 54

               
               
               Conread position:455-719
               
               
               Cow position:chr3:42631437-42631700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):25, 86

               
               
               Conread position:458-723
               
               
               Cow position:chr3:50127693-50127424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):162, 50

               
               
               Conread position:458-732
               
               
               Cow position:chr3:58947643-58947920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:206
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):64, 24

               
               
               Conread position:469-709
               
               
               Cow position:chr3:54342315-54342082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):166, 11

               
               
               Conread position:469-732
               
               
               Cow position:chr3:6685836-6686104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 19

               
               
               Conread position:487-713
               
               
               Cow position:chr3:19691080-19690867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):24, 52

               
               
               Conread position:498-727
               
               
               Cow position:chr3:48230389-48230166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):21, 7

               
               
               Conread position:511-732
               
               
               Cow position:chr3:19722105-19721875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):103, 47

               
               
               Conread position:546-727
               
               
               Cow position:chr3:40157407-40157220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:546-732
               
               
               Cow position:chr3:5995598-5995407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):28, 124

               
               
               Conread position:559-724
               
               
               Cow position:chr3:26836636-26836481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:568-727
               
               
               Cow position:chr3:77423936-77424094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):9, 38

               
               
               Conread position:584-723
               
               
               Cow position:chr3:3981894-3982033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):44, 74

               
               
               Conread position:618-732
               
               
               Cow position:chr3:7481048-7480938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:94
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:625-732
               
               
               Cow position:chr3:18542218-18542113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:91
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:626-726
               
               
               Cow position:chr3:78027219-78027121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:86
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr3:19756768-19756664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr3:48060641-48060536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:89
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):51, 15

               
               
               Conread position:630-732
               
               
               Cow position:chr3:49137345-49137244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:632-727
               
               
               Cow position:chr3:41000303-41000399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:83
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:632-727
               
               
               Cow position:chr3:46502727-46502823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:82
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:632-732
               
               
               Cow position:chr3:57484536-57484435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:86
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:637-727
               
               
               Cow position:chr3:66638940-66639031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:92
               
               
               Alignm identity:80
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:93-295
               
               
               Cow position:chr4:12241420-12241219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:159
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):123, 24

               
               
               Conread position:95-213
               
               
               Cow position:chr4:528793-528909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:96
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:95-241
               
               
               Cow position:chr4:4905946-4906091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-274
               
               
               Cow position:chr4:3961391-3961569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:146
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-280
               
               
               Cow position:chr4:24445401-24445223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:95-280
               
               
               Cow position:chr4:32211967-32212151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:151
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-280
               
               
               Cow position:chr4:44724883-44725067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):121, 14

               
               
               Conread position:95-280
               
               
               Cow position:chr4:47717806-47717623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-280
               
               
               Cow position:chr4:47764370-47764187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-287
               
               
               Cow position:chr4:16056402-16056593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):121, 10

               
               
               Conread position:95-292
               
               
               Cow position:chr4:66925799-66925994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:162
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr4:158315-158514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:161
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr4:355710-355906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr4:602793-602990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:156
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):121, 12

               
               
               Conread position:95-293
               
               
               Cow position:chr4:6268828-6268633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr4:12587098-12587295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:156
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr4:30307659-30307460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:159
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):121, 17

               
               
               Conread position:95-294
               
               
               Cow position:chr4:6490565-6490367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:156
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr4:17926455-17926257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr4:18516696-18516894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:157
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):121, 17

               
               
               Conread position:95-294
               
               
               Cow position:chr4:41331237-41331436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr4:48026197-48026394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr4:57979428-57979625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:95-294
               
               
               Cow position:chr4:61256696-61256889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:166
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-332
               
               
               Cow position:chr4:66179188-66178947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-364
               
               
               Cow position:chr4:11384759-11385022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-371
               
               
               Cow position:chr4:11393541-11393271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-477
               
               
               Cow position:chr4:34185071-34184728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:95-497
               
               
               Cow position:chr4:60264768-60264368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-528
               
               
               Cow position:chr4:21338204-21337778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 22

               
               
               Conread position:95-663
               
               
               Cow position:chr4:1464125-1463573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 22

               
               
               Conread position:95-732
               
               
               Cow position:chr4:28830828-28831439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:641
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 14

               
               
               Conread position:95-732
               
               
               Cow position:chr4:46663992-46664615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:649
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 34

               
               
               Conread position:96-294
               
               
               Cow position:chr4:11618654-11618848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:167
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 20

               
               
               Conread position:97-293
               
               
               Cow position:chr4:9587065-9587260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):119, 12

               
               
               Conread position:97-293
               
               
               Cow position:chr4:13547831-13548026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:156
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):119, 12

               
               
               Conread position:97-293
               
               
               Cow position:chr4:65223732-65223537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):119, 12

               
               
               Conread position:112-274
               
               
               Cow position:chr4:33073295-33073132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):30, 41

               
               
               Conread position:112-274
               
               
               Cow position:chr4:41119828-41119991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-280
               
               
               Cow position:chr4:25599804-25599635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:112-280
               
               
               Cow position:chr4:26887048-26886881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:112-280
               
               
               Cow position:chr4:43880924-43881092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):104, 27

               
               
               Conread position:112-294
               
               
               Cow position:chr4:10408492-10408671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:151
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):88, 40

               
               
               Conread position:112-294
               
               
               Cow position:chr4:16359698-16359881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-294
               
               
               Cow position:chr4:45049483-45049301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:112-325
               
               
               Cow position:chr4:13492391-13492599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):104, 51

               
               
               Conread position:112-331
               
               
               Cow position:chr4:51044114-51043898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):104, 46

               
               
               Conread position:112-371
               
               
               Cow position:chr4:8598342-8598084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 118

               
               
               Conread position:113-294
               
               
               Cow position:chr4:43319830-43319649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):103, 85

               
               
               Conread position:114-280
               
               
               Cow position:chr4:4415899-4416066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:137
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-293
               
               
               Cow position:chr4:1930807-1930625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:150
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-293
               
               
               Cow position:chr4:5879982-5880164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:153
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-293
               
               
               Cow position:chr4:9354954-9354774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-293
               
               
               Cow position:chr4:18424708-18424526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:115-293
               
               
               Cow position:chr4:101115-100934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:148
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:116-294
               
               
               Cow position:chr4:36896188-36896365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):100, 82

               
               
               Conread position:120-293
               
               
               Cow position:chr4:3125618-3125794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:144
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:121-294
               
               
               Cow position:chr4:31565481-31565306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:129-280
               
               
               Cow position:chr4:27333267-27333419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:136-293
               
               
               Cow position:chr4:41954312-41954473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:142-293
               
               
               Cow position:chr4:41957973-41958128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:146-293
               
               
               Cow position:chr4:18190255-18190404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):70, 50

               
               
               Conread position:149-319
               
               
               Cow position:chr4:33493677-33493847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:150-293
               
               
               Cow position:chr4:31669122-31669268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:204-359
               
               
               Cow position:chr4:27443479-27443635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):12, 141

               
               
               Conread position:268-500
               
               
               Cow position:chr4:54955720-54955950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:176
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):97, 129

               
               
               Conread position:390-592
               
               
               Cow position:chr4:14822022-14821825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):122, 10

               
               
               Conread position:442-621
               
               
               Cow position:chr4:21565311-21565492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):69, 43

               
               
               Conread position:443-718
               
               
               Cow position:chr4:14549809-14550073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):172, 39

               
               
               Conread position:477-732
               
               
               Cow position:chr4:34184665-34184421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):32, 69

               
               
               Conread position:497-723
               
               
               Cow position:chr4:60264295-60264074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):11, 70

               
               
               Conread position:584-722
               
               
               Cow position:chr4:14821600-14821459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):34, 88

               
               
               Conread position:619-732
               
               
               Cow position:chr4:26886871-26886762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:94
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:626-727
               
               
               Cow position:chr4:12241222-12241123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:85
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:626-727
               
               
               Cow position:chr4:36896363-36896462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:86
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr4:6490369-6490265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr4:43319651-43319547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr4:45049303-45049199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:627-732
               
               
               Cow position:chr4:43881105-43881208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:87
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:632-732
               
               
               Cow position:chr4:355908-356008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:85
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):13, 33

               
               
               Conread position:10-373
               
               
               Cow position:chr5:53626948-53626601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):27, 6

               
               
               Conread position:67-279
               
               
               Cow position:chr5:23960451-23960238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):149, 0

               
               
               Conread position:89-360
               
               
               Cow position:chr5:58334707-58334443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):8, 29

               
               
               Conread position:90-289
               
               
               Cow position:chr5:4019310-4019111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:157
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:92-281
               
               
               Cow position:chr5:32733361-32733173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:157
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 25

               
               
               Conread position:93-317
               
               
               Cow position:chr5:64782126-64781903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:171
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):123, 17

               
               
               Conread position:95-248
               
               
               Cow position:chr5:17774146-17773994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-258
               
               
               Cow position:chr5:3504356-3504194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):121, 12

               
               
               Conread position:95-260
               
               
               Cow position:chr5:26089937-26089773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):151, 18

               
               
               Conread position:95-269
               
               
               Cow position:chr5:24330168-24330341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:147
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):110, 22

               
               
               Conread position:95-279
               
               
               Cow position:chr5:2430238-2430055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:152
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):121, 14

               
               
               Conread position:95-279
               
               
               Cow position:chr5:54932324-54932141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):121, 14

               
               
               Conread position:95-287
               
               
               Cow position:chr5:26769704-26769890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-287
               
               
               Cow position:chr5:27570007-27570197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:165
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 14

               
               
               Conread position:95-290
               
               
               Cow position:chr5:27652089-27651893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:167
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 20

               
               
               Conread position:95-290
               
               
               Cow position:chr5:58195896-58196090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:155
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr5:32772376-32772575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:163
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):121, 12

               
               
               Conread position:95-293
               
               
               Cow position:chr5:37732240-37732437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:157
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr5:45182209-45182010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:166
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr5:46775974-46776173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:159
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr5:73489667-73489470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr5:4068884-4069080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:95-294
               
               
               Cow position:chr5:9686534-9686335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:159
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr5:12644044-12643839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):157, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr5:24098543-24098741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr5:28007094-28007282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):120, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr5:29009249-29009445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:164
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr5:34696496-34696695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:159
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr5:39164906-39164708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr5:41551033-41550834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:163
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 15

               
               
               Conread position:95-294
               
               
               Cow position:chr5:45700160-45700358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:162
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr5:49119387-49119189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):121, 8

               
               
               Conread position:95-294
               
               
               Cow position:chr5:49182163-49182361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:165
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-311
               
               
               Cow position:chr5:57977153-57977363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:174
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):122, 22

               
               
               Conread position:95-322
               
               
               Cow position:chr5:46644581-46644806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:178
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):121, 19

               
               
               Conread position:95-324
               
               
               Cow position:chr5:32945768-32945999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 22

               
               
               Conread position:95-325
               
               
               Cow position:chr5:46738691-46738464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:177
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-330
               
               
               Cow position:chr5:27001504-27001737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):121, 17

               
               
               Conread position:95-365
               
               
               Cow position:chr5:41529697-41529428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-366
               
               
               Cow position:chr5:61019950-61019700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):121, 14

               
               
               Conread position:95-370
               
               
               Cow position:chr5:76123685-76123407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-371
               
               
               Cow position:chr5:25000750-25000482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):47, 22

               
               
               Conread position:95-371
               
               
               Cow position:chr5:27489141-27489416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 24

               
               
               Conread position:95-375
               
               
               Cow position:chr5:51162794-51163075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-400
               
               
               Cow position:chr5:29436075-29435758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:225
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):45, 22

               
               
               Conread position:95-401
               
               
               Cow position:chr5:49129115-49129417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):121, 28

               
               
               Conread position:96-239
               
               
               Cow position:chr5:5786712-5786570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):120, 21

               
               
               Conread position:96-293
               
               
               Cow position:chr5:30579217-30579413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):120, 21

               
               
               Conread position:96-311
               
               
               Cow position:chr5:32673848-32673633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 21

               
               
               Conread position:96-332
               
               
               Cow position:chr5:4385148-4385379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):120, 21

               
               
               Conread position:96-332
               
               
               Cow position:chr5:10918693-10918924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:181
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):120, 13

               
               
               Conread position:96-488
               
               
               Cow position:chr5:49593560-49593170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 9

               
               
               Conread position:97-280
               
               
               Cow position:chr5:29042408-29042589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):44, 12

               
               
               Conread position:97-293
               
               
               Cow position:chr5:2531167-2531364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:160
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):44, 20

               
               
               Conread position:97-293
               
               
               Cow position:chr5:24576811-24577006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):119, 13

               
               
               Conread position:97-293
               
               
               Cow position:chr5:44459379-44459574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):119, 12

               
               
               Conread position:97-319
               
               
               Cow position:chr5:10776368-10776141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:177
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):119, 12

               
               
               Conread position:97-326
               
               
               Cow position:chr5:28031373-28031605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:181
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):119, 20

               
               
               Conread position:99-727
               
               
               Cow position:chr5:46659613-46660227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:637
               
               
               Alignm identity:466
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 17

               
               
               Conread position:100-253
               
               
               Cow position:chr5:6158300-6158148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):116, 108

               
               
               Conread position:101-366
               
               
               Cow position:chr5:26068821-26068565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):115, 18

               
               
               Conread position:109-293
               
               
               Cow position:chr5:59482160-59482344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):107, 77

               
               
               Conread position:109-294
               
               
               Cow position:chr5:55627893-55628078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):107, 81

               
               
               Conread position:112-206
               
               
               Cow position:chr5:18653954-18654048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:81
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:112-244
               
               
               Cow position:chr5:1341884-1341756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):104, 50

               
               
               Conread position:112-274
               
               
               Cow position:chr5:48808806-48808643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:112-293
               
               
               Cow position:chr5:49518569-49518749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):104, 16

               
               
               Conread position:112-294
               
               
               Cow position:chr5:415813-415630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-294
               
               
               Cow position:chr5:2914360-2914540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-294
               
               
               Cow position:chr5:3785699-3785877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):104, 89

               
               
               Conread position:112-369
               
               
               Cow position:chr5:52433877-52434133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):104, 27

               
               
               Conread position:112-370
               
               
               Cow position:chr5:46630532-46630282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 203

               
               
               Conread position:113-294
               
               
               Cow position:chr5:57482636-57482454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:113-311
               
               
               Cow position:chr5:41962328-41962129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:114-280
               
               
               Cow position:chr5:14380074-14380240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):102, 128

               
               
               Conread position:114-280
               
               
               Cow position:chr5:46663914-46664081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:114-292
               
               
               Cow position:chr5:10843508-10843329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:114-293
               
               
               Cow position:chr5:6589110-6588927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:149
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:114-293
               
               
               Cow position:chr5:9042949-9043129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-293
               
               
               Cow position:chr5:27909361-27909179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-293
               
               
               Cow position:chr5:47831200-47831020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):168, 102

               
               
               Conread position:114-293
               
               
               Cow position:chr5:48468368-48468188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:145
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-294
               
               
               Cow position:chr5:34202846-34203027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:150
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-295
               
               
               Cow position:chr5:26079307-26079124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-346
               
               
               Cow position:chr5:3964375-3964591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:116-294
               
               
               Cow position:chr5:54792722-54792543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:117-331
               
               
               Cow position:chr5:18271522-18271735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):95, 87

               
               
               Conread position:119-293
               
               
               Cow position:chr5:59060533-59060711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:119-371
               
               
               Cow position:chr5:27682828-27682570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:190
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):97, 80

               
               
               Conread position:121-252
               
               
               Cow position:chr5:61273269-61273137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:124-293
               
               
               Cow position:chr5:31706495-31706667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:129-385
               
               
               Cow position:chr5:18117649-18117402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:131-281
               
               
               Cow position:chr5:25206763-25206605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):26, 8

               
               
               Conread position:135-369
               
               
               Cow position:chr5:23228163-23228392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):81, 95

               
               
               Conread position:143-294
               
               
               Cow position:chr5:20972105-20971954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:131
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:149-385
               
               
               Cow position:chr5:27059178-27058939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:149-385
               
               
               Cow position:chr5:27060081-27059842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:160-293
               
               
               Cow position:chr5:18665951-18666085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:161-325
               
               
               Cow position:chr5:6611969-6612136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:163-264
               
               
               Cow position:chr5:31101652-31101549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:89
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:166-293
               
               
               Cow position:chr5:35299817-35299946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):50, 20

               
               
               Conread position:167-571
               
               
               Cow position:chr5:40053423-40053804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 62

               
               
               Conread position:172-280
               
               
               Cow position:chr5:18122499-18122390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:91
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:172-293
               
               
               Cow position:chr5:10482817-10482939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:181-373
               
               
               Cow position:chr5:7502932-7502740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):15, 22

               
               
               Conread position:183-385
               
               
               Cow position:chr5:39247421-39247228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:186-293
               
               
               Cow position:chr5:56145038-56144930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:191-294
               
               
               Cow position:chr5:52805426-52805530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:232-723
               
               
               Cow position:chr5:61272828-61272364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 22

               
               
               Conread position:323-731
               
               
               Cow position:chr5:41962156-41961752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 34

               
               
               Conread position:364-732
               
               
               Cow position:chr5:23228493-23228860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:263
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):14, 20

               
               
               Conread position:383-713
               
               
               Cow position:chr5:18117318-18117009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):125, 17

               
               
               Conread position:383-727
               
               
               Cow position:chr5:39247141-39246824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 114

               
               
               Conread position:383-732
               
               
               Cow position:chr5:18272386-18272737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):13, 34

               
               
               Conread position:383-732
               
               
               Cow position:chr5:25000380-25000029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:238
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):40, 32

               
               
               Conread position:383-732
               
               
               Cow position:chr5:27001894-27002227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:383-732
               
               
               Cow position:chr5:46630176-46629841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 107

               
               
               Conread position:384-732
               
               
               Cow position:chr5:29435710-29435379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:239
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):29, 120

               
               
               Conread position:409-726
               
               
               Cow position:chr5:41358205-41357902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:209
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):11, 92

               
               
               Conread position:413-732
               
               
               Cow position:chr5:41528879-41528566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 66

               
               
               Conread position:443-722
               
               
               Cow position:chr5:26068405-26068129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):68, 49

               
               
               Conread position:443-727
               
               
               Cow position:chr5:16103332-16103044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):69, 41

               
               
               Conread position:449-714
               
               
               Cow position:chr5:28023421-28023687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):167, 84

               
               
               Conread position:483-721
               
               
               Cow position:chr5:51164300-51164543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):30, 235

               
               
               Conread position:512-727
               
               
               Cow position:chr5:14785398-14785191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):140, 46

               
               
               Conread position:612-727
               
               
               Cow position:chr5:46738504-46738390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):9, 15

               
               
               Conread position:626-732
               
               
               Cow position:chr5:2914538-2914642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr5:49119191-49119086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:632-726
               
               
               Cow position:chr5:415629-415534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:96
               
               
               Alignm identity:81
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:90-292
               
               
               Cow position:chr6:28063368-28063568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:164
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):6, 28

               
               
               Conread position:91-267
               
               
               Cow position:chr6:5951214-5951039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:144
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):125, 26

               
               
               Conread position:92-467
               
               
               Cow position:chr6:37116172-37116540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 25

               
               
               Conread position:93-349
               
               
               Cow position:chr6:65899868-65899606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:198
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):105, 24

               
               
               Conread position:95-214
               
               
               Cow position:chr6:57869967-57869850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:95-262
               
               
               Cow position:chr6:28275018-28275184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):71, 22

               
               
               Conread position:95-264
               
               
               Cow position:chr6:66231828-66231999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):47, 19

               
               
               Conread position:95-271
               
               
               Cow position:chr6:25214294-25214469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):121, 14

               
               
               Conread position:95-274
               
               
               Cow position:chr6:6566641-6566819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):121, 21

               
               
               Conread position:95-274
               
               
               Cow position:chr6:47043168-47042985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):56, 22

               
               
               Conread position:95-279
               
               
               Cow position:chr6:13276836-13277019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:150
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-280
               
               
               Cow position:chr6:701991-702170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:95-280
               
               
               Cow position:chr6:13104094-13104278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:155
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-280
               
               
               Cow position:chr6:16051916-16052100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:148
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-280
               
               
               Cow position:chr6:24239101-24239285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:148
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-280
               
               
               Cow position:chr6:33459899-33460083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:153
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):117, 22

               
               
               Conread position:95-284
               
               
               Cow position:chr6:41553053-41553234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):121, 19

               
               
               Conread position:95-288
               
               
               Cow position:chr6:44150520-44150327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr6:2374736-2374935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:159
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr6:3149040-3149239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:160
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr6:15141146-15140947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:155
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:95-293
               
               
               Cow position:chr6:27169613-27169816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):103, 14

               
               
               Conread position:95-293
               
               
               Cow position:chr6:28491478-28491279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:158
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):121, 14

               
               
               Conread position:95-293
               
               
               Cow position:chr6:30275142-30274946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr6:39908563-39908762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:162
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr6:40251699-40251898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):121, 14

               
               
               Conread position:95-293
               
               
               Cow position:chr6:65822090-65821891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:160
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):121, 14

               
               
               Conread position:95-294
               
               
               Cow position:chr6:3277914-3277716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:156
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):121, 12

               
               
               Conread position:95-294
               
               
               Cow position:chr6:8201767-8201971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:95-294
               
               
               Cow position:chr6:8761268-8761071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:95-294
               
               
               Cow position:chr6:13847071-13847268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):121, 10

               
               
               Conread position:95-294
               
               
               Cow position:chr6:19453953-19454149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:164
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr6:29311527-29311725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):121, 24

               
               
               Conread position:95-294
               
               
               Cow position:chr6:33388866-33389076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):55, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr6:34892974-34892772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):25, 47

               
               
               Conread position:95-294
               
               
               Cow position:chr6:36526079-36526280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):72, 10

               
               
               Conread position:95-294
               
               
               Cow position:chr6:43793734-43793520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):47, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr6:65841620-65841818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr6:65880903-65881101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:157
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-295
               
               
               Cow position:chr6:10558624-10558425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:165
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 19

               
               
               Conread position:95-301
               
               
               Cow position:chr6:3488364-3488159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):47, 18

               
               
               Conread position:95-317
               
               
               Cow position:chr6:20561076-20560855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-324
               
               
               Cow position:chr6:40315089-40315310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):121, 21

               
               
               Conread position:95-325
               
               
               Cow position:chr6:3889443-3889221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-332
               
               
               Cow position:chr6:13317453-13317226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):208, 12

               
               
               Conread position:95-359
               
               
               Cow position:chr6:7179659-7179395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 10

               
               
               Conread position:95-360
               
               
               Cow position:chr6:32330755-32330496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 28

               
               
               Conread position:95-371
               
               
               Cow position:chr6:59741018-59740748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:201
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:96-362
               
               
               Cow position:chr6:51190540-51190795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):120, 21

               
               
               Conread position:96-365
               
               
               Cow position:chr6:65927973-65928247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 11

               
               
               Conread position:96-366
               
               
               Cow position:chr6:66539834-66540090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:96-371
               
               
               Cow position:chr6:34203544-34203826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):108, 21

               
               
               Conread position:97-293
               
               
               Cow position:chr6:7866713-7866518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):119, 12

               
               
               Conread position:97-293
               
               
               Cow position:chr6:68026830-68027027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:162
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):119, 20

               
               
               Conread position:97-365
               
               
               Cow position:chr6:1100549-1100283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:195
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):119, 20

               
               
               Conread position:97-727
               
               
               Cow position:chr6:6476445-6475826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:642
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 20

               
               
               Conread position:99-323
               
               
               Cow position:chr6:30479139-30479362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:172
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):117, 18

               
               
               Conread position:100-325
               
               
               Cow position:chr6:6155726-6155950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):13, 35

               
               
               Conread position:111-702
               
               
               Cow position:chr6:38232327-38232901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 212

               
               
               Conread position:112-234
               
               
               Cow position:chr6:21971737-21971860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:100
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-242
               
               
               Cow position:chr6:913693-913824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-274
               
               
               Cow position:chr6:64715281-64715443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):104, 12

               
               
               Conread position:112-293
               
               
               Cow position:chr6:15280501-15280319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-294
               
               
               Cow position:chr6:27469302-27469481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):104, 70

               
               
               Conread position:112-294
               
               
               Cow position:chr6:35876667-35876484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:113-243
               
               
               Cow position:chr6:11277644-11277513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:105
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:113-293
               
               
               Cow position:chr6:26670806-26670623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:148
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:114-280
               
               
               Cow position:chr6:2554759-2554926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:114-280
               
               
               Cow position:chr6:58408859-58408692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-293
               
               
               Cow position:chr6:331415-331234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:152
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):102, 58

               
               
               Conread position:114-293
               
               
               Cow position:chr6:17598226-17598044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:149
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-293
               
               
               Cow position:chr6:43617769-43617950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):102, 29

               
               
               Conread position:114-293
               
               
               Cow position:chr6:44029096-44029274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):102, 132

               
               
               Conread position:114-294
               
               
               Cow position:chr6:55544274-55544093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-316
               
               
               Cow position:chr6:13943961-13944169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:114-319
               
               
               Cow position:chr6:1405185-1404973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-319
               
               
               Cow position:chr6:1411887-1411675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-385
               
               
               Cow position:chr6:35420549-35420286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 21

               
               
               Conread position:115-325
               
               
               Cow position:chr6:40554531-40554324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):101, 10

               
               
               Conread position:115-592
               
               
               Cow position:chr6:43608299-43607835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 19

               
               
               Conread position:116-274
               
               
               Cow position:chr6:17046110-17046269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:116-294
               
               
               Cow position:chr6:27529952-27529773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:118-293
               
               
               Cow position:chr6:34127410-34127588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:120-290
               
               
               Cow position:chr6:65007747-65007916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:144
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):96, 43

               
               
               Conread position:127-313
               
               
               Cow position:chr6:15476355-15476540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):88, 103

               
               
               Conread position:130-399
               
               
               Cow position:chr6:10641229-10641498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 63

               
               
               Conread position:135-293
               
               
               Cow position:chr6:7141411-7141252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):81, 8

               
               
               Conread position:135-398
               
               
               Cow position:chr6:25359586-25359848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):218, 81

               
               
               Conread position:135-443
               
               
               Cow position:chr6:14853399-14853108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):64, 93

               
               
               Conread position:141-324
               
               
               Cow position:chr6:59919205-59919018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:141-326
               
               
               Cow position:chr6:28105764-28105573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):75, 31

               
               
               Conread position:151-325
               
               
               Cow position:chr6:1822550-1822377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):65, 153

               
               
               Conread position:153-251
               
               
               Cow position:chr6:9738792-9738891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:85
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:158-274
               
               
               Cow position:chr6:58026855-58026971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:95
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):58, 16

               
               
               Conread position:163-293
               
               
               Cow position:chr6:10499622-10499491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:163-293
               
               
               Cow position:chr6:39437649-39437780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:163-294
               
               
               Cow position:chr6:52693125-52693257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:166-293
               
               
               Cow position:chr6:65914318-65914445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):50, 108

               
               
               Conread position:166-294
               
               
               Cow position:chr6:12650844-12650715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:182-293
               
               
               Cow position:chr6:40275209-40275323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:183-306
               
               
               Cow position:chr6:49520197-49520073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):33, 25

               
               
               Conread position:329-731
               
               
               Cow position:chr6:42616396-42616796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 52

               
               
               Conread position:349-714
               
               
               Cow position:chr6:1383509-1383156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):85, 19

               
               
               Conread position:383-705
               
               
               Cow position:chr6:7179291-7178967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):36, 69

               
               
               Conread position:383-719
               
               
               Cow position:chr6:8752540-8752204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):62, 29

               
               
               Conread position:383-719
               
               
               Cow position:chr6:35434135-35434456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):63, 32

               
               
               Conread position:383-719
               
               
               Cow position:chr6:66541608-66541953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):36, 63

               
               
               Conread position:383-732
               
               
               Cow position:chr6:1100181-1099846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):181, 36

               
               
               Conread position:383-732
               
               
               Cow position:chr6:35419833-35419515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:251
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):125, 108

               
               
               Conread position:422-732
               
               
               Cow position:chr6:10643566-10643882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 179

               
               
               Conread position:456-732
               
               
               Cow position:chr6:33995267-33994992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:208
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):18, 64

               
               
               Conread position:485-727
               
               
               Cow position:chr6:2887268-2887498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:518-727
               
               
               Cow position:chr6:8021044-8021256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):99, 48

               
               
               Conread position:563-732
               
               
               Cow position:chr6:38901004-38900835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):51, 24

               
               
               Conread position:609-732
               
               
               Cow position:chr6:40554365-40554245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:611-732
               
               
               Cow position:chr6:65928177-65928299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:626-717
               
               
               Cow position:chr6:13317273-13317184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:92
               
               
               Alignm identity:80
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr6:25214486-25214590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr6:29311723-29311827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr6:34892774-34892670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr6:36526278-36526384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:91
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):19, 40

               
               
               Conread position:626-732
               
               
               Cow position:chr6:47042967-47042863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:629-723
               
               
               Cow position:chr6:59919052-59918958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:82
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:631-727
               
               
               Cow position:chr6:17046287-17046384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:85
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):7, 35

               
               
               Conread position:632-727
               
               
               Cow position:chr6:6566840-6566937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:83
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:632-728
               
               
               Cow position:chr6:4508190-4508094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:81
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:634-732
               
               
               Cow position:chr6:55544088-55543990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:85
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):68, 24

               
               
               Conread position:636-732
               
               
               Cow position:chr6:913893-913989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:81
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:637-728
               
               
               Cow position:chr6:19454156-19454248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:93
               
               
               Alignm identity:82
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:637-732
               
               
               Cow position:chr6:52693264-52693359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:96
               
               
               Alignm identity:81
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:71-281
               
               
               Cow position:chr7:48633480-48633690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:169
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):13, 48

               
               
               Conread position:83-377
               
               
               Cow position:chr7:20820399-20820685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:195
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):133, 11

               
               
               Conread position:91-366
               
               
               Cow position:chr7:40270418-40270146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):22, 72

               
               
               Conread position:95-230
               
               
               Cow position:chr7:38536635-38536767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:95-251
               
               
               Cow position:chr7:41869820-41869664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:137
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-263
               
               
               Cow position:chr7:33878240-33878078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-271
               
               
               Cow position:chr7:54602977-54603152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):121, 21

               
               
               Conread position:95-272
               
               
               Cow position:chr7:1357560-1357384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:148
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-279
               
               
               Cow position:chr7:994361-994539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:95-280
               
               
               Cow position:chr7:14139475-14139291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:150
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-280
               
               
               Cow position:chr7:20799316-20799136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:95-287
               
               
               Cow position:chr7:1449610-1449800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:154
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):119, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr7:16746-16549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:155
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr7:6648529-6648331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:162
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr7:11446681-11446881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:160
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):72, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr7:11466612-11466414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):121, 21

               
               
               Conread position:95-293
               
               
               Cow position:chr7:19924697-19924504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr7:33406116-33405919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):47, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr7:35297145-35296947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:161
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr7:39791881-39792078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:155
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):121, 21

               
               
               Conread position:95-293
               
               
               Cow position:chr7:45949024-45948829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):192, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr7:55537791-55537595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr7:446505-446307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr7:1372526-1372328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:157
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr7:5662500-5662697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr7:8145118-8144920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr7:10431292-10431094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:156
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr7:13537457-13537260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:156
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr7:21127536-21127339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):122, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr7:21234885-21234688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):121, 12

               
               
               Conread position:95-294
               
               
               Cow position:chr7:21975611-21975423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:165
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr7:21985525-21985723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:157
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):121, 21

               
               
               Conread position:95-294
               
               
               Cow position:chr7:27786749-27786944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):121, 21

               
               
               Conread position:95-294
               
               
               Cow position:chr7:34149224-34149422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr7:46901954-46901757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:95-294
               
               
               Cow position:chr7:63385465-63385664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):29, 10

               
               
               Conread position:95-294
               
               
               Cow position:chr7:64241822-64241624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:158
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr7:67417170-67417366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:163
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:95-294
               
               
               Cow position:chr7:67798977-67799175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:155
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-295
               
               
               Cow position:chr7:52119959-52119760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:167
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 17

               
               
               Conread position:95-316
               
               
               Cow position:chr7:1611085-1610863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 12

               
               
               Conread position:95-324
               
               
               Cow position:chr7:23836245-23836465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):46, 22

               
               
               Conread position:95-342
               
               
               Cow position:chr7:68232066-68232312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):121, 17

               
               
               Conread position:95-343
               
               
               Cow position:chr7:68479293-68479541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 22

               
               
               Conread position:95-361
               
               
               Cow position:chr7:59136534-59136789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):224, 22

               
               
               Conread position:95-366
               
               
               Cow position:chr7:49290786-49291057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 10

               
               
               Conread position:95-371
               
               
               Cow position:chr7:63550564-63550302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:206
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:95-372
               
               
               Cow position:chr7:39555969-39555695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):118, 7

               
               
               Conread position:95-385
               
               
               Cow position:chr7:1400234-1399949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 18

               
               
               Conread position:95-385
               
               
               Cow position:chr7:63020974-63021254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 22

               
               
               Conread position:95-407
               
               
               Cow position:chr7:35287434-35287123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 22

               
               
               Conread position:95-415
               
               
               Cow position:chr7:68857990-68857684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 228

               
               
               Conread position:95-466
               
               
               Cow position:chr7:24934838-24934476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-478
               
               
               Cow position:chr7:68778027-68777659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-727
               
               
               Cow position:chr7:29470249-29470880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:650
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 16

               
               
               Conread position:95-732
               
               
               Cow position:chr7:3154892-3155542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:661
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-732
               
               
               Cow position:chr7:39108113-39107494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:649
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 8

               
               
               Conread position:96-294
               
               
               Cow position:chr7:24808340-24808141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):120, 21

               
               
               Conread position:96-385
               
               
               Cow position:chr7:6489192-6488923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:96-667
               
               
               Cow position:chr7:29370456-29369918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 21

               
               
               Conread position:96-732
               
               
               Cow position:chr7:51014082-51014694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:645
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 21

               
               
               Conread position:97-293
               
               
               Cow position:chr7:21320284-21320479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):119, 12

               
               
               Conread position:97-293
               
               
               Cow position:chr7:23815842-23815647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):119, 12

               
               
               Conread position:97-293
               
               
               Cow position:chr7:61559341-61559536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):119, 12

               
               
               Conread position:97-295
               
               
               Cow position:chr7:27101986-27101789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):119, 12

               
               
               Conread position:97-350
               
               
               Cow position:chr7:60857090-60856851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):117, 20

               
               
               Conread position:101-371
               
               
               Cow position:chr7:24056411-24056687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):41, 16

               
               
               Conread position:109-280
               
               
               Cow position:chr7:60463287-60463459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:109-293
               
               
               Cow position:chr7:43830887-43830702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:112-233
               
               
               Cow position:chr7:26890947-26891070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:99
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:112-266
               
               
               Cow position:chr7:62679529-62679377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):104, 113

               
               
               Conread position:112-279
               
               
               Cow position:chr7:36085477-36085636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):104, 125

               
               
               Conread position:112-294
               
               
               Cow position:chr7:5183546-5183729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:151
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-294
               
               
               Cow position:chr7:34486054-34486238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:112-294
               
               
               Cow position:chr7:41490252-41490433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:154
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 87

               
               
               Conread position:112-306
               
               
               Cow position:chr7:68907971-68908163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:163
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 26

               
               
               Conread position:112-356
               
               
               Cow position:chr7:21310346-21310591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 210

               
               
               Conread position:112-363
               
               
               Cow position:chr7:58378069-58377823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):102, 177

               
               
               Conread position:112-385
               
               
               Cow position:chr7:55280662-55280390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 58

               
               
               Conread position:114-280
               
               
               Cow position:chr7:7257338-7257503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):102, 111

               
               
               Conread position:114-293
               
               
               Cow position:chr7:3234540-3234358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:150
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-293
               
               
               Cow position:chr7:6642734-6642552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:114-293
               
               
               Cow position:chr7:20515629-20515447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-293
               
               
               Cow position:chr7:20528532-20528350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-293
               
               
               Cow position:chr7:20555857-20556039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-293
               
               
               Cow position:chr7:25439649-25439835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:114-295
               
               
               Cow position:chr7:3301011-3300829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:148
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):168, 102

               
               
               Conread position:114-385
               
               
               Cow position:chr7:47050825-47051098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:120-366
               
               
               Cow position:chr7:58993342-58993585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):22, 171

               
               
               Conread position:120-690
               
               
               Cow position:chr7:53990901-53991442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 206

               
               
               Conread position:142-294
               
               
               Cow position:chr7:21929315-21929466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:150-316
               
               
               Cow position:chr7:27147429-27147596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):67, 11

               
               
               Conread position:157-500
               
               
               Cow position:chr7:54196071-54195738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 166

               
               
               Conread position:166-360
               
               
               Cow position:chr7:1735331-1735130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):50, 171

               
               
               Conread position:166-366
               
               
               Cow position:chr7:68557435-68557635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):48, 32

               
               
               Conread position:285-492
               
               
               Cow position:chr7:48633726-48633928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):190, 40

               
               
               Conread position:383-706
               
               
               Cow position:chr7:27560476-27560163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:236
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):63, 34

               
               
               Conread position:383-732
               
               
               Cow position:chr7:58993669-58994016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 42

               
               
               Conread position:396-702
               
               
               Cow position:chr7:67426440-67426735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 88

               
               
               Conread position:411-732
               
               
               Cow position:chr7:68908426-68908740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 86

               
               
               Conread position:419-714
               
               
               Cow position:chr7:21310611-21310907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:207
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):37, 89

               
               
               Conread position:422-727
               
               
               Cow position:chr7:4415487-4415796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 70

               
               
               Conread position:443-714
               
               
               Cow position:chr7:58377629-58377352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):69, 39

               
               
               Conread position:477-722
               
               
               Cow position:chr7:55280159-55279929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):6, 77

               
               
               Conread position:482-696
               
               
               Cow position:chr7:6488284-6488079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):32, 84

               
               
               Conread position:483-718
               
               
               Cow position:chr7:54644332-54644104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):25, 50

               
               
               Conread position:493-718
               
               
               Cow position:chr7:48634624-48634846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):15, 52

               
               
               Conread position:496-727
               
               
               Cow position:chr7:1734603-1734369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):15, 144

               
               
               Conread position:512-703
               
               
               Cow position:chr7:59137046-59137232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:512-732
               
               
               Cow position:chr7:63550109-63549885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):32, 55

               
               
               Conread position:522-732
               
               
               Cow position:chr7:59683497-59683701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):19, 24

               
               
               Conread position:526-719
               
               
               Cow position:chr7:21394645-21394459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):44, 20

               
               
               Conread position:528-727
               
               
               Cow position:chr7:34149320-34149519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):40, 11

               
               
               Conread position:534-727
               
               
               Cow position:chr7:49291853-49292032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:546-732
               
               
               Cow position:chr7:55537687-55537495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):76, 125

               
               
               Conread position:605-718
               
               
               Cow position:chr7:9138745-9138857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:95
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:606-732
               
               
               Cow position:chr7:21127360-21127237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:615-726
               
               
               Cow position:chr7:26894085-26894195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:89
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:626-723
               
               
               Cow position:chr7:10431096-10431002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:84
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-727
               
               
               Cow position:chr7:8144922-8144824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:87
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr7:13537262-13537158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr7:14139279-14139175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr7:21234690-21234586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:630-727
               
               
               Cow position:chr7:33405916-33405821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:85
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:632-732
               
               
               Cow position:chr7:1610886-1610785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:86
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:632-732
               
               
               Cow position:chr7:67799176-67799276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:87
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):13, 33

               
               
               Conread position:637-727
               
               
               Cow position:chr7:27786951-27787041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:91
               
               
               Alignm identity:80
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-577
               
               
               Cow position:chr8:33430137-33430713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 30

               
               
               Conread position:92-294
               
               
               Cow position:chr8:42484222-42484423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):124, 24

               
               
               Conread position:93-292
               
               
               Cow position:chr8:50934412-50934610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:165
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 17

               
               
               Conread position:94-287
               
               
               Cow position:chr8:11821626-11821817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:162
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 7

               
               
               Conread position:95-214
               
               
               Cow position:chr8:25407758-25407875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:95-262
               
               
               Cow position:chr8:14591589-14591423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):119, 22

               
               
               Conread position:95-262
               
               
               Cow position:chr8:27983482-27983318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:140
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:95-262
               
               
               Cow position:chr8:38390681-38390847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):119, 21

               
               
               Conread position:95-264
               
               
               Cow position:chr8:9540180-9540015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-278
               
               
               Cow position:chr8:11774222-11774405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):43, 24

               
               
               Conread position:95-280
               
               
               Cow position:chr8:2886064-2886248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):121, 10

               
               
               Conread position:95-280
               
               
               Cow position:chr8:11832011-11832197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):36, 22

               
               
               Conread position:95-280
               
               
               Cow position:chr8:32631712-32631530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:152
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-280
               
               
               Cow position:chr8:47069493-47069308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:151
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):39, 12

               
               
               Conread position:95-280
               
               
               Cow position:chr8:47662013-47661828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:151
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):47, 24

               
               
               Conread position:95-280
               
               
               Cow position:chr8:49214740-49214924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):119, 22

               
               
               Conread position:95-281
               
               
               Cow position:chr8:42759257-42759442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:154
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):46, 22

               
               
               Conread position:95-288
               
               
               Cow position:chr8:21158505-21158313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:161
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-288
               
               
               Cow position:chr8:45189397-45189589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:164
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 21

               
               
               Conread position:95-288
               
               
               Cow position:chr8:45448771-45448963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:163
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):109, 17

               
               
               Conread position:95-292
               
               
               Cow position:chr8:8556835-8556639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr8:5016494-5016691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:157
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):121, 24

               
               
               Conread position:95-293
               
               
               Cow position:chr8:6065455-6065256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:163
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr8:8518269-8518071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:160
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr8:9735560-9735759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:162
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr8:11761593-11761789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr8:19050789-19050986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):121, 21

               
               
               Conread position:95-293
               
               
               Cow position:chr8:22571983-22571783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):46, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr8:24916024-24915827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:159
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):121, 12

               
               
               Conread position:95-293
               
               
               Cow position:chr8:26005284-26005084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):93, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr8:27578715-27578914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:159
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr8:47074583-47074778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:163
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):72, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr8:2171066-2170868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr8:8229468-8229270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr8:10743317-10743119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr8:23217073-23217271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:166
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 21

               
               
               Conread position:95-294
               
               
               Cow position:chr8:25522714-25522910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:157
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):119, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr8:25776360-25776162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:157
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr8:27925628-27925826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:166
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr8:32319236-32319038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):121, 12

               
               
               Conread position:95-294
               
               
               Cow position:chr8:36636229-36636033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr8:39195903-39195706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr8:44036464-44036267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:159
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):117, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr8:46944607-46944408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):104, 14

               
               
               Conread position:95-294
               
               
               Cow position:chr8:50288838-50288640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr8:59262580-59262382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:159
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-301
               
               
               Cow position:chr8:23770948-23771153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):67, 22

               
               
               Conread position:95-317
               
               
               Cow position:chr8:3785023-3785244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:169
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-325
               
               
               Cow position:chr8:4686706-4686930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:182
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-327
               
               
               Cow position:chr8:1153994-1153765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:176
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-327
               
               
               Cow position:chr8:45316812-45316580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-330
               
               
               Cow position:chr8:1319358-1319599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:188
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):121, 24

               
               
               Conread position:95-332
               
               
               Cow position:chr8:50994101-50994341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:184
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):121, 21

               
               
               Conread position:95-362
               
               
               Cow position:chr8:46222019-46221757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-364
               
               
               Cow position:chr8:47491519-47491250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):41, 22

               
               
               Conread position:95-366
               
               
               Cow position:chr8:8533311-8533042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:201
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):121, 17

               
               
               Conread position:95-369
               
               
               Cow position:chr8:42467638-42467906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 17

               
               
               Conread position:95-371
               
               
               Cow position:chr8:23766085-23765819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):49, 22

               
               
               Conread position:95-385
               
               
               Cow position:chr8:12543728-12543453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):186, 22

               
               
               Conread position:95-732
               
               
               Cow position:chr8:38607211-38606586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:643
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-732
               
               
               Cow position:chr8:45161062-45160462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:647
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 22

               
               
               Conread position:96-194
               
               
               Cow position:chr8:13735959-13736055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:86
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:96-293
               
               
               Cow position:chr8:17311331-17311528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):46, 23

               
               
               Conread position:96-363
               
               
               Cow position:chr8:13808915-13809181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):160, 21

               
               
               Conread position:96-732
               
               
               Cow position:chr8:11970277-11969668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:640
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 21

               
               
               Conread position:96-732
               
               
               Cow position:chr8:61035054-61034406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:662
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 9

               
               
               Conread position:97-293
               
               
               Cow position:chr8:8655904-8655708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):119, 20

               
               
               Conread position:97-293
               
               
               Cow position:chr8:9275326-9275521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:157
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):119, 12

               
               
               Conread position:97-349
               
               
               Cow position:chr8:20276736-20276983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):183, 18

               
               
               Conread position:100-728
               
               
               Cow position:chr8:42161408-42160806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:634
               
               
               Alignm identity:473
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):243, 17

               
               
               Conread position:109-691
               
               
               Cow position:chr8:44693613-44694165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 18

               
               
               Conread position:112-235
               
               
               Cow position:chr8:46091536-46091417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):104, 47

               
               
               Conread position:112-264
               
               
               Cow position:chr8:47885362-47885510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):104, 72

               
               
               Conread position:112-279
               
               
               Cow position:chr8:19330064-19330232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-280
               
               
               Cow position:chr8:12449276-12449445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:112-280
               
               
               Cow position:chr8:33588702-33588871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-294
               
               
               Cow position:chr8:3856686-3856505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):104, 141

               
               
               Conread position:112-294
               
               
               Cow position:chr8:14928665-14928482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-294
               
               
               Cow position:chr8:32930838-32931021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:155
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-294
               
               
               Cow position:chr8:44244245-44244062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-294
               
               
               Cow position:chr8:51667969-51667784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:150
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:112-294
               
               
               Cow position:chr8:60060710-60060891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):104, 118

               
               
               Conread position:112-306
               
               
               Cow position:chr8:47670788-47670973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:112-372
               
               
               Cow position:chr8:11056190-11056456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):30, 185

               
               
               Conread position:112-385
               
               
               Cow position:chr8:25542830-25543103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 125

               
               
               Conread position:113-244
               
               
               Cow position:chr8:11801559-11801695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:113-251
               
               
               Cow position:chr8:8910550-8910689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:114-279
               
               
               Cow position:chr8:34348009-34348174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):102, 52

               
               
               Conread position:114-280
               
               
               Cow position:chr8:10748705-10748872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:115-385
               
               
               Cow position:chr8:45693298-45693024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:196
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:115-732
               
               
               Cow position:chr8:24420201-24419594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 24

               
               
               Conread position:116-623
               
               
               Cow position:chr8:16083660-16084183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:528
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 83

               
               
               Conread position:122-251
               
               
               Cow position:chr8:61066908-61066778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:127-294
               
               
               Cow position:chr8:46600637-46600805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:138
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:129-330
               
               
               Cow position:chr8:30488157-30487958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):87, 80

               
               
               Conread position:133-385
               
               
               Cow position:chr8:47672820-47673072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 195

               
               
               Conread position:135-263
               
               
               Cow position:chr8:50922903-50923032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):8, 21

               
               
               Conread position:137-732
               
               
               Cow position:chr8:58187147-58186601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 92

               
               
               Conread position:139-281
               
               
               Cow position:chr8:42420210-42420066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:142-315
               
               
               Cow position:chr8:1348877-1348703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:143-293
               
               
               Cow position:chr8:45797956-45797805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:149-690
               
               
               Cow position:chr8:44076522-44075993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 143

               
               
               Conread position:151-267
               
               
               Cow position:chr8:7160871-7160988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:93
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:166-294
               
               
               Cow position:chr8:8401835-8401707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:188-293
               
               
               Cow position:chr8:6683851-6683957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:87
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:195-293
               
               
               Cow position:chr8:32437669-32437568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:87
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:195-371
               
               
               Cow position:chr8:8316032-8315847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:337-483
               
               
               Cow position:chr8:1117448-1117594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:383-732
               
               
               Cow position:chr8:42468009-42468348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 17

               
               
               Conread position:479-722
               
               
               Cow position:chr8:47673524-47673758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):29, 80

               
               
               Conread position:510-727
               
               
               Cow position:chr8:45692754-45692551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):46, 108

               
               
               Conread position:564-732
               
               
               Cow position:chr8:7161340-7161504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:588-727
               
               
               Cow position:chr8:42419963-42419829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:597-732
               
               
               Cow position:chr8:33430871-33431013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:608-727
               
               
               Cow position:chr8:45316613-45316494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:97
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):38, 6

               
               
               Conread position:609-727
               
               
               Cow position:chr8:8910999-8911113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:626-726
               
               
               Cow position:chr8:32319040-32318942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:86
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-727
               
               
               Cow position:chr8:3856507-3856407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:87
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:626-727
               
               
               Cow position:chr8:25522908-25523007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:86
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-727
               
               
               Cow position:chr8:36636035-36635937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:86
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr8:4686904-4687008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr8:23771144-23771247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr8:25776164-25776060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr8:39195708-39195604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:627-732
               
               
               Cow position:chr8:33588884-33588987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:88
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:630-727
               
               
               Cow position:chr8:19330249-19330343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:85
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:632-727
               
               
               Cow position:chr8:8229269-8229173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:82
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:632-732
               
               
               Cow position:chr8:44244061-44243961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:85
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):13, 33

               
               
               Conread position:635-726
               
               
               Cow position:chr8:47885538-47885629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:93
               
               
               Alignm identity:81
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):28, 9

               
               
               Conread position:637-732
               
               
               Cow position:chr8:47661806-47661712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:96
               
               
               Alignm identity:81
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:34-314
               
               
               Cow position:chr9:18836905-18837195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):10, 91

               
               
               Conread position:48-294
               
               
               Cow position:chr9:6830586-6830346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):60, 168

               
               
               Conread position:92-294
               
               
               Cow position:chr9:792551-792354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):123, 25

               
               
               Conread position:93-294
               
               
               Cow position:chr9:22653529-22653729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:160
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):123, 24

               
               
               Conread position:95-222
               
               
               Cow position:chr9:4672573-4672698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-234
               
               
               Cow position:chr9:28021514-28021654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):72, 22

               
               
               Conread position:95-249
               
               
               Cow position:chr9:4984733-4984885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):121, 21

               
               
               Conread position:95-250
               
               
               Cow position:chr9:37162841-37162687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):121, 14

               
               
               Conread position:95-260
               
               
               Cow position:chr9:3566887-3566723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):71, 22

               
               
               Conread position:95-274
               
               
               Cow position:chr9:47002154-47002332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):118, 22

               
               
               Conread position:95-280
               
               
               Cow position:chr9:131230-131040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:95-280
               
               
               Cow position:chr9:3006280-3006096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:153
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):119, 22

               
               
               Conread position:95-280
               
               
               Cow position:chr9:37971245-37971061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):121, 15

               
               
               Conread position:95-280
               
               
               Cow position:chr9:50789643-50789826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-281
               
               
               Cow position:chr9:1979944-1980129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:152
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-281
               
               
               Cow position:chr9:34992358-34992543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:153
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-288
               
               
               Cow position:chr9:15072480-15072671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:160
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-288
               
               
               Cow position:chr9:54361401-54361588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:160
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):122, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr9:780839-780640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr9:1995947-1995752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:157
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr9:3542772-3542969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:156
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):121, 14

               
               
               Conread position:95-293
               
               
               Cow position:chr9:25023336-25023139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):119, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr9:25483839-25484035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:157
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr9:42309648-42309845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr9:45873314-45873511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:158
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chr9:64018494-64018297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:156
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr9:2171024-2171220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr9:6051084-6050885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):110, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr9:7062127-7061929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr9:10321775-10321971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr9:28626075-28625878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:164
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr9:29628781-29628584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:95-294
               
               
               Cow position:chr9:30672333-30672531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):121, 21

               
               
               Conread position:95-294
               
               
               Cow position:chr9:31807499-31807696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:155
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:95-294
               
               
               Cow position:chr9:32968933-32969130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):42, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr9:37063831-37063640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:165
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chr9:59455634-59455435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:155
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):121, 18

               
               
               Conread position:95-294
               
               
               Cow position:chr9:59536059-59536258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:157
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):121, 18

               
               
               Conread position:95-295
               
               
               Cow position:chr9:51182229-51182030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:161
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):121, 14

               
               
               Conread position:95-327
               
               
               Cow position:chr9:15683899-15684120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):36, 22

               
               
               Conread position:95-327
               
               
               Cow position:chr9:27034666-27034898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-331
               
               
               Cow position:chr9:2185926-2186168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):35, 22

               
               
               Conread position:95-332
               
               
               Cow position:chr9:3155993-3156229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:188
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):121, 17

               
               
               Conread position:95-332
               
               
               Cow position:chr9:37129572-37129340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:187
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):217, 22

               
               
               Conread position:95-332
               
               
               Cow position:chr9:42568837-42569067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:179
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):121, 21

               
               
               Conread position:95-338
               
               
               Cow position:chr9:3726243-3726489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):121, 10

               
               
               Conread position:95-357
               
               
               Cow position:chr9:64118790-64119044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 22

               
               
               Conread position:95-363
               
               
               Cow position:chr9:35657916-35658174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-365
               
               
               Cow position:chr9:3356027-3355759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 22

               
               
               Conread position:95-371
               
               
               Cow position:chr9:39992884-39993152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 22

               
               
               Conread position:95-385
               
               
               Cow position:chr9:20309566-20309282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 22

               
               
               Conread position:95-387
               
               
               Cow position:chr9:6111031-6110745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:212
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):126, 22

               
               
               Conread position:95-724
               
               
               Cow position:chr9:44817824-44818440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-732
               
               
               Cow position:chr9:13477253-13476622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:650
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 22

               
               
               Conread position:96-287
               
               
               Cow position:chr9:3586336-3586525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:159
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):120, 14

               
               
               Conread position:96-293
               
               
               Cow position:chr9:4532457-4532653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:156
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):120, 21

               
               
               Conread position:96-293
               
               
               Cow position:chr9:60278055-60277860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):120, 21

               
               
               Conread position:96-314
               
               
               Cow position:chr9:5424221-5424001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):42, 21

               
               
               Conread position:97-293
               
               
               Cow position:chr9:163536-163341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):119, 12

               
               
               Conread position:97-293
               
               
               Cow position:chr9:9055098-9054903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):119, 12

               
               
               Conread position:97-293
               
               
               Cow position:chr9:40191709-40191514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):119, 12

               
               
               Conread position:97-293
               
               
               Cow position:chr9:49177860-49177665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):119, 12

               
               
               Conread position:99-385
               
               
               Cow position:chr9:6974095-6974380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):41, 18

               
               
               Conread position:106-294
               
               
               Cow position:chr9:8968975-8968794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):110, 134

               
               
               Conread position:109-250
               
               
               Cow position:chr9:18067242-18067100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:112-261
               
               
               Cow position:chr9:52570631-52570780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):104, 92

               
               
               Conread position:112-262
               
               
               Cow position:chr9:9013086-9013238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:112-280
               
               
               Cow position:chr9:59174180-59174011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:139
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-281
               
               
               Cow position:chr9:3548191-3548023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:141
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):104, 42

               
               
               Conread position:112-293
               
               
               Cow position:chr9:31020802-31020984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:149
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-294
               
               
               Cow position:chr9:59443830-59444013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):19, 86

               
               
               Conread position:112-294
               
               
               Cow position:chr9:59482693-59482509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:112-316
               
               
               Cow position:chr9:2500314-2500108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):104, 179

               
               
               Conread position:112-332
               
               
               Cow position:chr9:5003979-5004199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):102, 208

               
               
               Conread position:112-332
               
               
               Cow position:chr9:10315346-10315572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 97

               
               
               Conread position:114-287
               
               
               Cow position:chr9:16268354-16268528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:142
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-287
               
               
               Cow position:chr9:31194184-31194009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:146
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-293
               
               
               Cow position:chr9:1076215-1076033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-293
               
               
               Cow position:chr9:25755241-25755059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-293
               
               
               Cow position:chr9:28677955-28678137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:150
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-293
               
               
               Cow position:chr9:31064415-31064595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-293
               
               
               Cow position:chr9:34242613-34242435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:145
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):102, 28

               
               
               Conread position:114-293
               
               
               Cow position:chr9:36724485-36724664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:145
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):102, 21

               
               
               Conread position:114-294
               
               
               Cow position:chr9:16175749-16175930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:118-279
               
               
               Cow position:chr9:30826668-30826830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:118-294
               
               
               Cow position:chr9:18509817-18509640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:119-239
               
               
               Cow position:chr9:1251988-1251867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:97
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:119-293
               
               
               Cow position:chr9:2488144-2487966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:146
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:119-293
               
               
               Cow position:chr9:27934078-27934253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):97, 133

               
               
               Conread position:120-363
               
               
               Cow position:chr9:3937833-3937591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):99, 78

               
               
               Conread position:127-366
               
               
               Cow position:chr9:1635538-1635776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):89, 15

               
               
               Conread position:129-293
               
               
               Cow position:chr9:60651716-60651548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:100
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:130-274
               
               
               Cow position:chr9:7002519-7002664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:145-280
               
               
               Cow position:chr9:17064370-17064234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:149-370
               
               
               Cow position:chr9:3803059-3803280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 173

               
               
               Conread position:205-385
               
               
               Cow position:chr9:13222406-13222581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:148
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):11, 86

               
               
               Conread position:246-469
               
               
               Cow position:chr9:44794578-44794796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 44

               
               
               Conread position:372-732
               
               
               Cow position:chr9:2203972-2204308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:238
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):262, 11

               
               
               Conread position:383-713
               
               
               Cow position:chr9:240597-240271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):177, 100

               
               
               Conread position:383-727
               
               
               Cow position:chr9:2001096-2000742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 18

               
               
               Conread position:383-727
               
               
               Cow position:chr9:28688013-28688360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 18

               
               
               Conread position:383-732
               
               
               Cow position:chr9:4281692-4282038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:233
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):68, 29

               
               
               Conread position:383-732
               
               
               Cow position:chr9:64119157-64119493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):294, 50

               
               
               Conread position:390-562
               
               
               Cow position:chr9:13222670-13222839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):118, 91

               
               
               Conread position:409-693
               
               
               Cow position:chr9:34721415-34721700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 70

               
               
               Conread position:409-727
               
               
               Cow position:chr9:3803274-3803597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 219

               
               
               Conread position:443-726
               
               
               Cow position:chr9:9705528-9705821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):63, 91

               
               
               Conread position:450-691
               
               
               Cow position:chr9:44795053-44795294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 120

               
               
               Conread position:469-732
               
               
               Cow position:chr9:30487556-30487817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):134, 44

               
               
               Conread position:472-713
               
               
               Cow position:chr9:6110554-6110308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):27, 85

               
               
               Conread position:477-616
               
               
               Cow position:chr9:26709584-26709441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:479-698
               
               
               Cow position:chr9:43663572-43663787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):30, 81

               
               
               Conread position:481-727
               
               
               Cow position:chr9:5514429-5514686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):27, 144

               
               
               Conread position:492-732
               
               
               Cow position:chr9:3354658-3354423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:179
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):24, 82

               
               
               Conread position:514-732
               
               
               Cow position:chr9:59425806-59426033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):35, 157

               
               
               Conread position:518-731
               
               
               Cow position:chr9:63854626-63854840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):94, 45

               
               
               Conread position:626-732
               
               
               Cow position:chr9:7002943-7003047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr9:18509642-18509538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr9:32969128-32969232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-732
               
               
               Cow position:chr9:37162654-37162548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:630-732
               
               
               Cow position:chr9:59536258-59536360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:85
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:631-732
               
               
               Cow position:chr9:42309846-42309946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:85
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:632-727
               
               
               Cow position:chr9:59173996-59173900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:83
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:90-287
               
               
               Cow position:chrX:26505050-26505247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:167
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 27

               
               
               Conread position:90-288
               
               
               Cow position:chrX:21602745-21602942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:167
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 27

               
               
               Conread position:92-294
               
               
               Cow position:chrX:23041255-23041054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:158
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):124, 13

               
               
               Conread position:93-293
               
               
               Cow position:chrX:15598799-15598998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):123, 23

               
               
               Conread position:93-294
               
               
               Cow position:chrX:27494577-27494779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:164
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):43, 16

               
               
               Conread position:93-294
               
               
               Cow position:chrX:29950704-29950511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:93-386
               
               
               Cow position:chrX:21270327-21270041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):69, 18

               
               
               Conread position:95-199
               
               
               Cow position:chrX:11668571-11668469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:86
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:95-243
               
               
               Cow position:chrX:21794966-21795113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-250
               
               
               Cow position:chrX:2859930-2859776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-250
               
               
               Cow position:chrX:5395091-5394937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-250
               
               
               Cow position:chrX:26400596-26400444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:95-251
               
               
               Cow position:chrX:32095095-32094937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):94, 22

               
               
               Conread position:95-254
               
               
               Cow position:chrX:5834093-5833935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:138
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-261
               
               
               Cow position:chrX:12997711-12997543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):41, 15

               
               
               Conread position:95-261
               
               
               Cow position:chrX:21829395-21829560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-267
               
               
               Cow position:chrX:13413245-13413074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:143
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-274
               
               
               Cow position:chrX:23391728-23391550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):121, 10

               
               
               Conread position:95-279
               
               
               Cow position:chrX:27989913-27989727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):16, 82

               
               
               Conread position:95-279
               
               
               Cow position:chrX:29872688-29872511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):46, 12

               
               
               Conread position:95-280
               
               
               Cow position:chrX:11465131-11464947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-280
               
               
               Cow position:chrX:23455707-23455523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-280
               
               
               Cow position:chrX:24089273-24089457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-280
               
               
               Cow position:chrX:30179123-30178940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):121, 14

               
               
               Conread position:95-280
               
               
               Cow position:chrX:39564060-39563876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:154
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-287
               
               
               Cow position:chrX:16461548-16461733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:157
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):187, 22

               
               
               Conread position:95-287
               
               
               Cow position:chrX:22778183-22778375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:160
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-288
               
               
               Cow position:chrX:6873200-6873010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):123, 22

               
               
               Conread position:95-288
               
               
               Cow position:chrX:16812722-16812531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):187, 22

               
               
               Conread position:95-288
               
               
               Cow position:chrX:17631953-17631766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):118, 22

               
               
               Conread position:95-288
               
               
               Cow position:chrX:21632716-21632524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:170
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-288
               
               
               Cow position:chrX:22582829-22582636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:161
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 21

               
               
               Conread position:95-288
               
               
               Cow position:chrX:26628161-26627969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:165
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-289
               
               
               Cow position:chrX:22814253-22814447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-290
               
               
               Cow position:chrX:22525733-22525539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:154
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):121, 14

               
               
               Conread position:95-292
               
               
               Cow position:chrX:35017679-35017877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-292
               
               
               Cow position:chrX:40057194-40056998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:169
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 22

               
               
               Conread position:95-293
               
               
               Cow position:chrX:1833699-1833897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:160
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):121, 10

               
               
               Conread position:95-293
               
               
               Cow position:chrX:2101730-2101929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:162
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chrX:2603920-2604118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):49, 22

               
               
               Conread position:95-293
               
               
               Cow position:chrX:7030060-7030256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:156
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chrX:8670463-8670659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chrX:10531687-10531488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:158
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):121, 12

               
               
               Conread position:95-293
               
               
               Cow position:chrX:12280398-12280200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chrX:12353111-12353310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:160
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chrX:14787001-14786802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chrX:16275548-16275747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):46, 22

               
               
               Conread position:95-293
               
               
               Cow position:chrX:16363253-16363056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:155
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chrX:17478653-17478454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):46, 22

               
               
               Conread position:95-293
               
               
               Cow position:chrX:18659911-18659715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:158
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chrX:20316184-20315985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:159
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):119, 12

               
               
               Conread position:95-293
               
               
               Cow position:chrX:27426445-27426250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):187, 22

               
               
               Conread position:95-293
               
               
               Cow position:chrX:28758770-28758571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-293
               
               
               Cow position:chrX:31493292-31493490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:161
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):119, 14

               
               
               Conread position:95-293
               
               
               Cow position:chrX:37848885-37849084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:162
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chrX:6909459-6909277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chrX:12669994-12669795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:161
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):46, 22

               
               
               Conread position:95-294
               
               
               Cow position:chrX:13006754-13006556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:166
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 22

               
               
               Conread position:95-294
               
               
               Cow position:chrX:16699171-16699369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chrX:21222799-21222997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:158
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):121, 12

               
               
               Conread position:95-294
               
               
               Cow position:chrX:22488052-22488250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:156
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):121, 10

               
               
               Conread position:95-294
               
               
               Cow position:chrX:26758734-26758536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):121, 12

               
               
               Conread position:95-294
               
               
               Cow position:chrX:30056513-30056714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:95-294
               
               
               Cow position:chrX:30232237-30232039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):121, 14

               
               
               Conread position:95-294
               
               
               Cow position:chrX:30711224-30711418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):47, 14

               
               
               Conread position:95-294
               
               
               Cow position:chrX:32467123-32467321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:156
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-294
               
               
               Cow position:chrX:35529731-35529933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):121, 12

               
               
               Conread position:95-301
               
               
               Cow position:chrX:18954651-18954449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:161
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-316
               
               
               Cow position:chrX:8586965-8587189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:174
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-316
               
               
               Cow position:chrX:31187374-31187149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:176
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-317
               
               
               Cow position:chrX:30184023-30183802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-324
               
               
               Cow position:chrX:5840204-5840431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:172
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):122, 15

               
               
               Conread position:95-332
               
               
               Cow position:chrX:22619438-22619201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:185
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):121, 21

               
               
               Conread position:95-336
               
               
               Cow position:chrX:39719309-39719557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 21

               
               
               Conread position:95-366
               
               
               Cow position:chrX:24139155-24138886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-371
               
               
               Cow position:chrX:2143151-2143426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 22

               
               
               Conread position:95-385
               
               
               Cow position:chrX:13052503-13052785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 20

               
               
               Conread position:95-387
               
               
               Cow position:chrX:17668419-17668142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 22

               
               
               Conread position:95-388
               
               
               Cow position:chrX:40247443-40247161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:95-394
               
               
               Cow position:chrX:29998663-29998955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):217, 22

               
               
               Conread position:95-415
               
               
               Cow position:chrX:35021136-35021453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 16

               
               
               Conread position:95-477
               
               
               Cow position:chrX:31724897-31725277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 22

               
               
               Conread position:96-280
               
               
               Cow position:chrX:17050965-17051150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):45, 21

               
               
               Conread position:96-280
               
               
               Cow position:chrX:26767326-26767143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):120, 21

               
               
               Conread position:96-288
               
               
               Cow position:chrX:24122048-24121857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:158
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 21

               
               
               Conread position:96-293
               
               
               Cow position:chrX:1546807-1547003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:156
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):120, 21

               
               
               Conread position:96-293
               
               
               Cow position:chrX:7093470-7093668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):117, 21

               
               
               Conread position:96-294
               
               
               Cow position:chrX:20803998-20804196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 20

               
               
               Conread position:96-294
               
               
               Cow position:chrX:28603586-28603390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:159
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):119, 15

               
               
               Conread position:96-294
               
               
               Cow position:chrX:30044273-30044076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:170
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 21

               
               
               Conread position:96-362
               
               
               Cow position:chrX:20698423-20698162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 21

               
               
               Conread position:96-385
               
               
               Cow position:chrX:18532868-18533148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:207
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):104, 21

               
               
               Conread position:96-470
               
               
               Cow position:chrX:30142522-30142161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 21

               
               
               Conread position:97-269
               
               
               Cow position:chrX:11663632-11663461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):119, 12

               
               
               Conread position:97-288
               
               
               Cow position:chrX:9125232-9125422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):119, 13

               
               
               Conread position:97-293
               
               
               Cow position:chrX:982511-982706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:154
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):119, 20

               
               
               Conread position:97-293
               
               
               Cow position:chrX:18219270-18219467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:161
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):119, 20

               
               
               Conread position:97-293
               
               
               Cow position:chrX:39521780-39521975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):119, 12

               
               
               Conread position:97-293
               
               
               Cow position:chrX:41411148-41410953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):119, 12

               
               
               Conread position:97-294
               
               
               Cow position:chrX:29285290-29285485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):119, 12

               
               
               Conread position:97-295
               
               
               Cow position:chrX:24275543-24275740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:161
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 19

               
               
               Conread position:100-401
               
               
               Cow position:chrX:30369143-30368841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 42

               
               
               Conread position:100-416
               
               
               Cow position:chrX:44386352-44386660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 17

               
               
               Conread position:100-478
               
               
               Cow position:chrX:16017267-16016873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:101-333
               
               
               Cow position:chrX:34988774-34989004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):114, 16

               
               
               Conread position:104-274
               
               
               Cow position:chrX:5299345-5299174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:109-273
               
               
               Cow position:chrX:29882347-29882182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:109-279
               
               
               Cow position:chrX:29947590-29947761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:141
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:109-293
               
               
               Cow position:chrX:11433584-11433769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:109-385
               
               
               Cow position:chrX:22130797-22130518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:210
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):91, 175

               
               
               Conread position:111-294
               
               
               Cow position:chrX:6275733-6275548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:159
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:112-224
               
               
               Cow position:chrX:21490115-21490228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:94
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-244
               
               
               Cow position:chrX:38575937-38575800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:112-256
               
               
               Cow position:chrX:29853680-29853535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-273
               
               
               Cow position:chrX:23276908-23277070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:135
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-287
               
               
               Cow position:chrX:21289605-21289428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:153
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-290
               
               
               Cow position:chrX:2482752-2482573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:112-293
               
               
               Cow position:chrX:12478604-12478788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):30, 84

               
               
               Conread position:112-293
               
               
               Cow position:chrX:15127356-15127174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-293
               
               
               Cow position:chrX:26527862-26528044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-293
               
               
               Cow position:chrX:28634530-28634346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:152
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-294
               
               
               Cow position:chrX:320354-320536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):104, 163

               
               
               Conread position:112-294
               
               
               Cow position:chrX:23019210-23019393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):30, 128

               
               
               Conread position:112-294
               
               
               Cow position:chrX:24484526-24484344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):104, 91

               
               
               Conread position:112-294
               
               
               Cow position:chrX:29794228-29794047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:149
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):104, 119

               
               
               Conread position:112-294
               
               
               Cow position:chrX:38146191-38146374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:112-316
               
               
               Cow position:chrX:970652-970860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:112-327
               
               
               Cow position:chrX:24114301-24114086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):104, 143

               
               
               Conread position:112-365
               
               
               Cow position:chrX:29758046-29758292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):34, 153

               
               
               Conread position:112-385
               
               
               Cow position:chrX:12973343-12973072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 119

               
               
               Conread position:112-385
               
               
               Cow position:chrX:28549751-28550024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 174

               
               
               Conread position:112-712
               
               
               Cow position:chrX:6283208-6282595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:458
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 176

               
               
               Conread position:112-727
               
               
               Cow position:chrX:2536894-2536288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:477
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):373, 167

               
               
               Conread position:114-267
               
               
               Cow position:chrX:3421574-3421422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:114-278
               
               
               Cow position:chrX:12803976-12803811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:137
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-279
               
               
               Cow position:chrX:7751788-7751954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-279
               
               
               Cow position:chrX:13076809-13076643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-279
               
               
               Cow position:chrX:13097383-13097217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-279
               
               
               Cow position:chrX:15179543-15179377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:139
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-280
               
               
               Cow position:chrX:2562969-2562802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-280
               
               
               Cow position:chrX:9008226-9008393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:114-280
               
               
               Cow position:chrX:28562326-28562159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-293
               
               
               Cow position:chrX:1943156-1942974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:150
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-293
               
               
               Cow position:chrX:5283846-5283667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):102, 9

               
               
               Conread position:114-293
               
               
               Cow position:chrX:5323835-5323653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:114-293
               
               
               Cow position:chrX:5863286-5863468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):102, 143

               
               
               Conread position:114-293
               
               
               Cow position:chrX:8454640-8454820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:144
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-293
               
               
               Cow position:chrX:9192756-9192576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-293
               
               
               Cow position:chrX:12654867-12654690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):102, 33

               
               
               Conread position:114-293
               
               
               Cow position:chrX:21304638-21304458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-293
               
               
               Cow position:chrX:21340288-21340474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:114-293
               
               
               Cow position:chrX:23047034-23047212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):99, 111

               
               
               Conread position:114-293
               
               
               Cow position:chrX:28584868-28585050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):27, 21

               
               
               Conread position:114-293
               
               
               Cow position:chrX:30173782-30173601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):102, 58

               
               
               Conread position:114-293
               
               
               Cow position:chrX:37812050-37812232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:148
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:114-294
               
               
               Cow position:chrX:37142702-37142521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:154
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:115-293
               
               
               Cow position:chrX:7481492-7481671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:115-295
               
               
               Cow position:chrX:29096092-29096270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):100, 83

               
               
               Conread position:116-292
               
               
               Cow position:chrX:30010929-30011106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:144
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:116-294
               
               
               Cow position:chrX:24136509-24136336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):100, 64

               
               
               Conread position:118-227
               
               
               Cow position:chrX:37757877-37757985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:90
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):98, 21

               
               
               Conread position:119-264
               
               
               Cow position:chrX:14594652-14594794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):95, 13

               
               
               Conread position:119-280
               
               
               Cow position:chrX:13398227-13398065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:119-280
               
               
               Cow position:chrX:20360158-20359996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:135
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:135-293
               
               
               Cow position:chrX:30055828-30055668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:142-281
               
               
               Cow position:chrX:41851483-41851343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:148-294
               
               
               Cow position:chrX:4795811-4795960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:151-295
               
               
               Cow position:chrX:30990016-30990166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:152-679
               
               
               Cow position:chrX:21587117-21587647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:541
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 176

               
               
               Conread position:156-293
               
               
               Cow position:chrX:29884910-29885051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:176-280
               
               
               Cow position:chrX:3376158-3376053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:93
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:182-293
               
               
               Cow position:chrX:12342912-12343026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:295-715
               
               
               Cow position:chrX:26427908-26427493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:265
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):9, 24

               
               
               Conread position:348-495
               
               
               Cow position:chrX:27959858-27960005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:383-674
               
               
               Cow position:chrX:18611180-18611460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):128, 18

               
               
               Conread position:383-703
               
               
               Cow position:chrX:22130441-22130108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:232
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):95, 196

               
               
               Conread position:383-719
               
               
               Cow position:chrX:13417589-13417270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):56, 32

               
               
               Conread position:383-727
               
               
               Cow position:chrX:17668058-17667734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:390-705
               
               
               Cow position:chrX:13052865-13053169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):121, 11

               
               
               Conread position:414-726
               
               
               Cow position:chrX:24112968-24112665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):30, 20

               
               
               Conread position:426-727
               
               
               Cow position:chrX:10417441-10417138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):190, 90

               
               
               Conread position:428-724
               
               
               Cow position:chrX:20697220-20696936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:208
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):60, 133

               
               
               Conread position:443-722
               
               
               Cow position:chrX:6015192-6014912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):106, 72

               
               
               Conread position:450-654
               
               
               Cow position:chrX:30132518-30132316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:460-727
               
               
               Cow position:chrX:44387034-44387287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 23

               
               
               Conread position:465-717
               
               
               Cow position:chrX:30367254-30367006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):12, 76

               
               
               Conread position:482-731
               
               
               Cow position:chrX:16016759-16016504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):11, 87

               
               
               Conread position:483-684
               
               
               Cow position:chrX:27960470-27960670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):25, 16

               
               
               Conread position:484-719
               
               
               Cow position:chrX:31081897-31082125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):154, 24

               
               
               Conread position:484-727
               
               
               Cow position:chrX:40246953-40246715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):129, 33

               
               
               Conread position:507-694
               
               
               Cow position:chrX:31726057-31726248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):108, 51

               
               
               Conread position:510-712
               
               
               Cow position:chrX:30004115-30004314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):120, 42

               
               
               Conread position:528-732
               
               
               Cow position:chrX:26767231-26767027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):39, 11

               
               
               Conread position:546-730
               
               
               Cow position:chrX:40057090-40056906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):28, 90

               
               
               Conread position:546-732
               
               
               Cow position:chrX:28634441-28634252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):16, 68

               
               
               Conread position:600-732
               
               
               Cow position:chrX:13413097-13412969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):9, 26

               
               
               Conread position:606-732
               
               
               Cow position:chrX:5299175-5299053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:610-732
               
               
               Cow position:chrX:29285488-29285609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:619-719
               
               
               Cow position:chrX:22814466-22814564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:625-726
               
               
               Cow position:chrX:16699366-16699465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:87
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:626-727
               
               
               Cow position:chrX:22778379-22778479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:86
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):24, 15

               
               
               Conread position:626-727
               
               
               Cow position:chrX:30711416-30711513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:88
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-732
               
               
               Cow position:chrX:18954458-18954354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:626-732
               
               
               Cow position:chrX:21829591-21829695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:87
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:627-732
               
               
               Cow position:chrX:2482569-2482466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:89
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:627-732
               
               
               Cow position:chrX:23391531-23391428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:87
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:630-732
               
               
               Cow position:chrX:26528047-26528146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:632-732
               
               
               Cow position:chrX:23277090-23277190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:85
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):13, 33

               
               
               Conread position:634-727
               
               
               Cow position:chrX:5283669-5283576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:94
               
               
               Alignm identity:79
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:637-727
               
               
               Cow position:chrX:28603383-28603292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:92
               
               
               Alignm identity:81
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):13, 0