Non-Coding RNA Search

Cow genome map


           Conread name:
           Ss1.1-Ova1-OVRM10090H09.5
        

               Conread position:
               1-710
               

               Cow position:
               chr10:8996761-8996052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               711
               

               Alignm identity:
               486
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               567, 561
               

               Conread position:
               3-501
               

               Cow position:
               chr10:9031418-9031896 (view UCSC Genome Browser custom track)
               

               Alignm length:
               500
               

               Alignm identity:
               286
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               414, 248
               

               Conread position:
               3-627
               

               Cow position:
               chr10:9010487-9009863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               628
               

               Alignm identity:
               398
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 48
               

               Conread position:
               10-588
               

               Cow position:
               chr10:8996584-8996006 (view UCSC Genome Browser custom track)
               

               Alignm length:
               579
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               13-417
               

               Cow position:
               chr10:9031260-9031664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               14-677
               

               Cow position:
               chr10:8996664-8996001 (view UCSC Genome Browser custom track)
               

               Alignm length:
               664
               

               Alignm identity:
               437
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               15-534
               

               Cow position:
               chr10:21939147-21938631 (view UCSC Genome Browser custom track)
               

               Alignm length:
               523
               

               Alignm identity:
               328
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               114, 110
               

               Conread position:
               15-710
               

               Cow position:
               chr10:8996831-8996136 (view UCSC Genome Browser custom track)
               

               Alignm length:
               697
               

               Alignm identity:
               458
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               637, 632
               

               Conread position:
               60-572
               

               Cow position:
               chr10:9010346-9009834 (view UCSC Genome Browser custom track)
               

               Alignm length:
               514
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               325, 312
               

               Conread position:
               65-710
               

               Cow position:
               chr10:9010509-9009864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               648
               

               Alignm identity:
               420
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               312, 326
               

               Conread position:
               76-616
               

               Cow position:
               chr10:21939170-21938633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               544
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 27
               

               Conread position:
               79-716
               

               Cow position:
               chr10:8996851-8996215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               640
               

               Alignm identity:
               432
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               399, 386
               

               Conread position:
               80-710
               

               Cow position:
               chr10:9010576-9009948 (view UCSC Genome Browser custom track)
               

               Alignm length:
               632
               

               Alignm identity:
               401
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               136, 16
               

               Conread position:
               85-501
               

               Cow position:
               chr10:9031248-9031664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 63
               

               Conread position:
               106-714
               

               Cow position:
               chr10:21939378-21938784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               610
               

               Alignm identity:
               380
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               269, 154
               

               Conread position:
               107-707
               

               Cow position:
               chr10:21939223-21938626 (view UCSC Genome Browser custom track)
               

               Alignm length:
               603
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               208, 197
               

               Conread position:
               132-709
               

               Cow position:
               chr10:8996882-8996305 (view UCSC Genome Browser custom track)
               

               Alignm length:
               578
               

               Alignm identity:
               393
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               149-585
               

               Cow position:
               chr10:9031228-9031664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 68
               

               Conread position:
               151-710
               

               Cow position:
               chr10:9010591-9010032 (view UCSC Genome Browser custom track)
               

               Alignm length:
               562
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               224, 234
               

               Conread position:
               191-489
               

               Cow position:
               chr10:9031671-9031980 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               202
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               143, 0
               

               Conread position:
               216-718
               

               Cow position:
               chr10:8996882-8996381 (view UCSC Genome Browser custom track)
               

               Alignm length:
               506
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 70
               

               Conread position:
               236-669
               

               Cow position:
               chr10:9031231-9031664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 53
               

               Conread position:
               250-712
               

               Cow position:
               chr10:9010574-9010114 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 11
               

               Conread position:
               294-710
               

               Cow position:
               chr10:8996888-8996472 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 50
               

               Conread position:
               317-702
               

               Cow position:
               chr10:9031228-9031613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 52
               

               Conread position:
               380-712
               

               Cow position:
               chr10:8996886-8996554 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               401-709
               

               Cow position:
               chr10:9031228-9031536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               201
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               70, 83
               

               Conread position:
               450-710
               

               Cow position:
               chr10:8996900-8996640 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               175
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               485-710
               

               Cow position:
               chr10:9031228-9031453 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               147
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-678
               

               Cow position:
               chr11:74554852-74554175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               678
               

               Alignm identity:
               434
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-709
               

               Cow position:
               chr11:74555018-74554312 (view UCSC Genome Browser custom track)
               

               Alignm length:
               708
               

               Alignm identity:
               462
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               286, 281
               

               Conread position:
               10-715
               

               Cow position:
               chr11:74554927-74554222 (view UCSC Genome Browser custom track)
               

               Alignm length:
               708
               

               Alignm identity:
               461
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               367, 381
               

               Conread position:
               76-716
               

               Cow position:
               chr11:74555029-74554390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               643
               

               Alignm identity:
               424
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               310, 300
               

               Conread position:
               81-710
               

               Cow position:
               chr11:74555108-74554479 (view UCSC Genome Browser custom track)
               

               Alignm length:
               630
               

               Alignm identity:
               426
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               7-324
               

               Cow position:
               chr13:56292108-56291790 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               212
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               121, 109
               

               Conread position:
               10-500
               

               Cow position:
               chr13:39984413-39984903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               492
               

               Alignm identity:
               302
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               382, 371
               

               Conread position:
               35-710
               

               Cow position:
               chr13:39984186-39984861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               679
               

               Alignm identity:
               439
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 10
               

               Conread position:
               62-709
               

               Cow position:
               chr13:56333525-56334181 (view UCSC Genome Browser custom track)
               

               Alignm length:
               662
               

               Alignm identity:
               404
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               62, 71
               

               Conread position:
               65-422
               

               Cow position:
               chr13:56292134-56291779 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               241
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               273, 318
               

               Conread position:
               65-679
               

               Cow position:
               chr13:56333696-56334319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               626
               

               Alignm identity:
               391
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               167, 132
               

               Conread position:
               65-712
               

               Cow position:
               chr13:56292548-56291907 (view UCSC Genome Browser custom track)
               

               Alignm length:
               663
               

               Alignm identity:
               418
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               135, 28
               

               Conread position:
               66-541
               

               Cow position:
               chr13:56317328-56317796 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               295
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               22, 34
               

               Conread position:
               67-712
               

               Cow position:
               chr13:39984134-39984779 (view UCSC Genome Browser custom track)
               

               Alignm length:
               649
               

               Alignm identity:
               406
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               213, 220
               

               Conread position:
               73-710
               

               Cow position:
               chr13:39983888-39984525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               639
               

               Alignm identity:
               401
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               318, 307
               

               Conread position:
               73-712
               

               Cow position:
               chr13:39984056-39984695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               642
               

               Alignm identity:
               408
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               449, 456
               

               Conread position:
               76-710
               

               Cow position:
               chr13:56333623-56334266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               646
               

               Alignm identity:
               405
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               205, 212
               

               Conread position:
               78-533
               

               Cow position:
               chr13:22125174-22125629 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               272
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               299, 313
               

               Conread position:
               78-615
               

               Cow position:
               chr13:39930641-39931176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               540
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               289, 311
               

               Conread position:
               78-703
               

               Cow position:
               chr13:56292704-56292084 (view UCSC Genome Browser custom track)
               

               Alignm length:
               634
               

               Alignm identity:
               384
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               139, 191
               

               Conread position:
               79-533
               

               Cow position:
               chr13:24162901-24163355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               270
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               298, 312
               

               Conread position:
               82-547
               

               Cow position:
               chr13:39984401-39984866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               134, 125
               

               Conread position:
               82-710
               

               Cow position:
               chr13:39983813-39984441 (view UCSC Genome Browser custom track)
               

               Alignm length:
               630
               

               Alignm identity:
               379
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               440, 445
               

               Conread position:
               82-717
               

               Cow position:
               chr13:39983981-39984615 (view UCSC Genome Browser custom track)
               

               Alignm length:
               638
               

               Alignm identity:
               400
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               440, 447
               

               Conread position:
               83-378
               

               Cow position:
               chr13:56334059-56334352 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               197
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               42, 50
               

               Conread position:
               84-490
               

               Cow position:
               chr13:22125516-22125922 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               245
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               308, 296
               

               Conread position:
               84-645
               

               Cow position:
               chr13:22125096-22125657 (view UCSC Genome Browser custom track)
               

               Alignm length:
               562
               

               Alignm identity:
               325
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               84-668
               

               Cow position:
               chr13:39984319-39984903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               587
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               354, 358
               

               Conread position:
               84-679
               

               Cow position:
               chr13:22124844-22125439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               598
               

               Alignm identity:
               360
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               265, 247
               

               Conread position:
               84-679
               

               Cow position:
               chr13:24162570-24163165 (view UCSC Genome Browser custom track)
               

               Alignm length:
               598
               

               Alignm identity:
               360
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               265, 247
               

               Conread position:
               84-682
               

               Cow position:
               chr13:24162822-24163420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               599
               

               Alignm identity:
               340
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               84-708
               

               Cow position:
               chr13:22124928-22125553 (view UCSC Genome Browser custom track)
               

               Alignm length:
               629
               

               Alignm identity:
               368
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               155, 188
               

               Conread position:
               84-710
               

               Cow position:
               chr13:22124760-22125386 (view UCSC Genome Browser custom track)
               

               Alignm length:
               628
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               293, 298
               

               Conread position:
               84-710
               

               Cow position:
               chr13:22125012-22125638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               630
               

               Alignm identity:
               367
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               84, 79
               

               Conread position:
               84-710
               

               Cow position:
               chr13:24162486-24163112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               628
               

               Alignm identity:
               382
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               293, 298
               

               Conread position:
               84-710
               

               Cow position:
               chr13:24162738-24163364 (view UCSC Genome Browser custom track)
               

               Alignm length:
               630
               

               Alignm identity:
               365
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               84, 79
               

               Conread position:
               86-492
               

               Cow position:
               chr13:56292194-56291790 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               299, 37
               

               Conread position:
               95-710
               

               Cow position:
               chr13:56292850-56292234 (view UCSC Genome Browser custom track)
               

               Alignm length:
               623
               

               Alignm identity:
               364
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               297, 70
               

               Conread position:
               99-703
               

               Cow position:
               chr13:56292431-56291831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               612
               

               Alignm identity:
               390
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               101, 234
               

               Conread position:
               106-699
               

               Cow position:
               chr13:39930585-39931176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               594
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               556, 0
               

               Conread position:
               108-660
               

               Cow position:
               chr13:56292332-56291790 (view UCSC Genome Browser custom track)
               

               Alignm length:
               555
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 113
               

               Conread position:
               142-669
               

               Cow position:
               chr13:29183764-29183241 (view UCSC Genome Browser custom track)
               

               Alignm length:
               531
               

               Alignm identity:
               328
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               153, 69
               

               Conread position:
               146-447
               

               Cow position:
               chr13:56317929-56318230 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               188
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               84, 67
               

               Conread position:
               146-677
               

               Cow position:
               chr13:29183853-29183318 (view UCSC Genome Browser custom track)
               

               Alignm length:
               548
               

               Alignm identity:
               337
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               32, 128
               

               Conread position:
               148-661
               

               Cow position:
               chr13:56292718-56292199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               523
               

               Alignm identity:
               319
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               141, 192
               

               Conread position:
               180-701
               

               Cow position:
               chr13:22124688-22125209 (view UCSC Genome Browser custom track)
               

               Alignm length:
               524
               

               Alignm identity:
               309
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               393, 416
               

               Conread position:
               180-701
               

               Cow position:
               chr13:24162414-24162935 (view UCSC Genome Browser custom track)
               

               Alignm length:
               523
               

               Alignm identity:
               312
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               409, 402
               

               Conread position:
               180-701
               

               Cow position:
               chr13:39930575-39931096 (view UCSC Genome Browser custom track)
               

               Alignm length:
               523
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               188, 209
               

               Conread position:
               209-689
               

               Cow position:
               chr13:56333504-56333984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               294
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               92, 82
               

               Conread position:
               1-373
               

               Cow position:
               chr14:3127683-3127311 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               230
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               278, 285
               

               Conread position:
               1-458
               

               Cow position:
               chr14:3100834-3100377 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               276
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               291, 304
               

               Conread position:
               1-687
               

               Cow position:
               chr14:25794843-25794156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               692
               

               Alignm identity:
               440
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 42
               

               Conread position:
               1-708
               

               Cow position:
               chr14:25860027-25860735 (view UCSC Genome Browser custom track)
               

               Alignm length:
               712
               

               Alignm identity:
               430
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               135, 143
               

               Conread position:
               1-708
               

               Cow position:
               chr14:25877078-25877786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               712
               

               Alignm identity:
               438
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               135, 143
               

               Conread position:
               1-715
               

               Cow position:
               chr14:25876826-25877540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               718
               

               Alignm identity:
               453
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               230, 222
               

               Conread position:
               3-496
               

               Cow position:
               chr14:3127765-3127272 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               307
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               60, 44
               

               Conread position:
               3-505
               

               Cow position:
               chr14:25836724-25837226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               503
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-543
               

               Cow position:
               chr14:3080253-3079713 (view UCSC Genome Browser custom track)
               

               Alignm length:
               544
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               374, 382
               

               Conread position:
               3-544
               

               Cow position:
               chr14:25784189-25784730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               545
               

               Alignm identity:
               357
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 40
               

               Conread position:
               3-624
               

               Cow position:
               chr14:3156155-3156764 (view UCSC Genome Browser custom track)
               

               Alignm length:
               624
               

               Alignm identity:
               379
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               63, 44
               

               Conread position:
               3-626
               

               Cow position:
               chr14:447594-448217 (view UCSC Genome Browser custom track)
               

               Alignm length:
               625
               

               Alignm identity:
               374
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               374, 388
               

               Conread position:
               3-704
               

               Cow position:
               chr14:25859273-25859974 (view UCSC Genome Browser custom track)
               

               Alignm length:
               704
               

               Alignm identity:
               441
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               241, 232
               

               Conread position:
               3-704
               

               Cow position:
               chr14:25876912-25877613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               704
               

               Alignm identity:
               442
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               137, 145
               

               Conread position:
               3-709
               

               Cow position:
               chr14:25835800-25836507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               711
               

               Alignm identity:
               433
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               138, 144
               

               Conread position:
               3-710
               

               Cow position:
               chr14:3080757-3080050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               710
               

               Alignm identity:
               436
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 41
               

               Conread position:
               3-710
               

               Cow position:
               chr14:25795429-25794722 (view UCSC Genome Browser custom track)
               

               Alignm length:
               709
               

               Alignm identity:
               444
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               389, 385
               

               Conread position:
               3-712
               

               Cow position:
               chr14:25795261-25794552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               715
               

               Alignm identity:
               456
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 130
               

               Conread position:
               7-296
               

               Cow position:
               chr14:3079997-3079708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               182
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               63, 40
               

               Conread position:
               7-708
               

               Cow position:
               chr14:25836476-25837178 (view UCSC Genome Browser custom track)
               

               Alignm length:
               706
               

               Alignm identity:
               441
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 37
               

               Conread position:
               7-715
               

               Cow position:
               chr14:25783605-25784313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               711
               

               Alignm identity:
               460
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 37
               

               Conread position:
               10-424
               

               Cow position:
               chr14:3155421-3155835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               261
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               367, 372
               

               Conread position:
               10-703
               

               Cow position:
               chr14:25783524-25784217 (view UCSC Genome Browser custom track)
               

               Alignm length:
               694
               

               Alignm identity:
               445
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               10-704
               

               Cow position:
               chr14:25859868-25860562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               697
               

               Alignm identity:
               437
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 138
               

               Conread position:
               10-709
               

               Cow position:
               chr14:3155994-3156684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               703
               

               Alignm identity:
               450
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 48
               

               Conread position:
               10-709
               

               Cow position:
               chr14:25783776-25784475 (view UCSC Genome Browser custom track)
               

               Alignm length:
               702
               

               Alignm identity:
               451
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 34
               

               Conread position:
               11-710
               

               Cow position:
               chr14:25783441-25784140 (view UCSC Genome Browser custom track)
               

               Alignm length:
               703
               

               Alignm identity:
               460
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 30
               

               Conread position:
               13-459
               

               Cow position:
               chr14:25877426-25877872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               271
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               296, 303
               

               Conread position:
               13-684
               

               Cow position:
               chr14:25877174-25877845 (view UCSC Genome Browser custom track)
               

               Alignm length:
               676
               

               Alignm identity:
               425
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 50
               

               Conread position:
               13-710
               

               Cow position:
               chr14:25836398-25837095 (view UCSC Genome Browser custom track)
               

               Alignm length:
               699
               

               Alignm identity:
               440
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               364, 385
               

               Conread position:
               14-710
               

               Cow position:
               chr14:447521-448217 (view UCSC Genome Browser custom track)
               

               Alignm length:
               698
               

               Alignm identity:
               414
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               400, 405
               

               Conread position:
               15-462
               

               Cow position:
               chr14:680828-681275 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               282
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               48, 36
               

               Conread position:
               15-710
               

               Cow position:
               chr14:25895551-25896246 (view UCSC Genome Browser custom track)
               

               Alignm length:
               698
               

               Alignm identity:
               410
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               267, 273
               

               Conread position:
               19-710
               

               Cow position:
               chr14:25859541-25860232 (view UCSC Genome Browser custom track)
               

               Alignm length:
               694
               

               Alignm identity:
               427
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               368, 379
               

               Conread position:
               22-343
               

               Cow position:
               chr14:420585-420904 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               203
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               48, 27
               

               Conread position:
               25-290
               

               Cow position:
               chr14:25911026-25911291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               255, 262
               

               Conread position:
               25-505
               

               Cow position:
               chr14:25860303-25860783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               287
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               367, 375
               

               Conread position:
               25-518
               

               Cow position:
               chr14:25877354-25877847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               305
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               32, 21
               

               Conread position:
               25-600
               

               Cow position:
               chr14:25836662-25837237 (view UCSC Genome Browser custom track)
               

               Alignm length:
               577
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               363, 373
               

               Conread position:
               25-631
               

               Cow position:
               chr14:25895813-25896417 (view UCSC Genome Browser custom track)
               

               Alignm length:
               613
               

               Alignm identity:
               374
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               31, 21
               

               Conread position:
               25-710
               

               Cow position:
               chr14:25859967-25860652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               689
               

               Alignm identity:
               415
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               352, 367
               

               Conread position:
               25-710
               

               Cow position:
               chr14:25876682-25877367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               688
               

               Alignm identity:
               440
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               361, 373
               

               Conread position:
               25-710
               

               Cow position:
               chr14:25877018-25877703 (view UCSC Genome Browser custom track)
               

               Alignm length:
               687
               

               Alignm identity:
               416
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               449, 456
               

               Conread position:
               25-712
               

               Cow position:
               chr14:3101141-3100459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               691
               

               Alignm identity:
               420
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               283, 80
               

               Conread position:
               26-460
               

               Cow position:
               chr14:25910859-25911293 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               273
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               206, 197
               

               Conread position:
               29-710
               

               Cow position:
               chr14:3127991-3127310 (view UCSC Genome Browser custom track)
               

               Alignm length:
               686
               

               Alignm identity:
               443
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 22
               

               Conread position:
               35-673
               

               Cow position:
               chr14:25860145-25860783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               643
               

               Alignm identity:
               403
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 28
               

               Conread position:
               35-708
               

               Cow position:
               chr14:25835664-25836338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               681
               

               Alignm identity:
               423
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 84
               

               Conread position:
               35-710
               

               Cow position:
               chr14:680260-680935 (view UCSC Genome Browser custom track)
               

               Alignm length:
               678
               

               Alignm identity:
               406
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               342, 356
               

               Conread position:
               35-710
               

               Cow position:
               chr14:3080557-3079882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               678
               

               Alignm identity:
               429
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 22
               

               Conread position:
               35-710
               

               Cow position:
               chr14:25876608-25877283 (view UCSC Genome Browser custom track)
               

               Alignm length:
               679
               

               Alignm identity:
               438
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 113
               

               Conread position:
               35-710
               

               Cow position:
               chr14:25895067-25895742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               680
               

               Alignm identity:
               409
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 16
               

               Conread position:
               36-710
               

               Cow position:
               chr14:25835917-25836591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               676
               

               Alignm identity:
               410
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               273, 280
               

               Conread position:
               36-710
               

               Cow position:
               chr14:25859390-25860065 (view UCSC Genome Browser custom track)
               

               Alignm length:
               678
               

               Alignm identity:
               422
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               246, 251
               

               Conread position:
               36-710
               

               Cow position:
               chr14:25876441-25877115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               678
               

               Alignm identity:
               419
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               197, 192
               

               Conread position:
               49-715
               

               Cow position:
               chr14:25859823-25860489 (view UCSC Genome Browser custom track)
               

               Alignm length:
               668
               

               Alignm identity:
               414
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               183, 174
               

               Conread position:
               55-710
               

               Cow position:
               chr14:25859241-25859896 (view UCSC Genome Browser custom track)
               

               Alignm length:
               662
               

               Alignm identity:
               412
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               206, 217
               

               Conread position:
               59-709
               

               Cow position:
               chr14:680368-681018 (view UCSC Genome Browser custom track)
               

               Alignm length:
               653
               

               Alignm identity:
               400
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               425, 419
               

               Conread position:
               60-710
               

               Cow position:
               chr14:25836109-25836759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               652
               

               Alignm identity:
               420
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               332, 339
               

               Conread position:
               61-615
               

               Cow position:
               chr14:25910731-25911278 (view UCSC Genome Browser custom track)
               

               Alignm length:
               557
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               327, 11
               

               Conread position:
               62-675
               

               Cow position:
               chr14:3156130-3156734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               614
               

               Alignm identity:
               391
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               356, 0
               

               Conread position:
               63-508
               

               Cow position:
               chr14:3155390-3155835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               283
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               314, 319
               

               Conread position:
               65-702
               

               Cow position:
               chr14:3101185-3100553 (view UCSC Genome Browser custom track)
               

               Alignm length:
               639
               

               Alignm identity:
               405
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               420, 122
               

               Conread position:
               65-704
               

               Cow position:
               chr14:25876386-25877025 (view UCSC Genome Browser custom track)
               

               Alignm length:
               643
               

               Alignm identity:
               404
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               243, 250
               

               Conread position:
               65-708
               

               Cow position:
               chr14:680206-680850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               648
               

               Alignm identity:
               384
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               224, 219
               

               Conread position:
               65-709
               

               Cow position:
               chr14:25794863-25794218 (view UCSC Genome Browser custom track)
               

               Alignm length:
               651
               

               Alignm identity:
               423
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               167, 146
               

               Conread position:
               66-709
               

               Cow position:
               chr14:25876807-25877451 (view UCSC Genome Browser custom track)
               

               Alignm length:
               648
               

               Alignm identity:
               410
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               216, 222
               

               Conread position:
               66-710
               

               Cow position:
               chr14:3080442-3079798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               646
               

               Alignm identity:
               403
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               503, 489
               

               Conread position:
               66-712
               

               Cow position:
               chr14:3080610-3079964 (view UCSC Genome Browser custom track)
               

               Alignm length:
               649
               

               Alignm identity:
               406
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               418, 412
               

               Conread position:
               67-710
               

               Cow position:
               chr14:3061588-3060945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               648
               

               Alignm identity:
               364
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               310, 322
               

               Conread position:
               69-535
               

               Cow position:
               chr14:25784171-25784637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               73-709
               

               Cow position:
               chr14:25783755-25784391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               640
               

               Alignm identity:
               416
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               207, 214
               

               Conread position:
               73-709
               

               Cow position:
               chr14:25794939-25794302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               640
               

               Alignm identity:
               419
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               230, 222
               

               Conread position:
               73-712
               

               Cow position:
               chr14:25783923-25784562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               641
               

               Alignm identity:
               419
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               216, 211
               

               Conread position:
               76-709
               

               Cow position:
               chr14:25784010-25784643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               636
               

               Alignm identity:
               420
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               222, 215
               

               Conread position:
               76-709
               

               Cow position:
               chr14:25895444-25896078 (view UCSC Genome Browser custom track)
               

               Alignm length:
               638
               

               Alignm identity:
               384
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 72
               

               Conread position:
               78-664
               

               Cow position:
               chr14:3127858-3127272 (view UCSC Genome Browser custom track)
               

               Alignm length:
               589
               

               Alignm identity:
               376
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               299, 313
               

               Conread position:
               78-703
               

               Cow position:
               chr14:25836379-25837004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               627
               

               Alignm identity:
               399
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               393, 403
               

               Conread position:
               78-708
               

               Cow position:
               chr14:25836295-25836926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               632
               

               Alignm identity:
               403
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               625, 0
               

               Conread position:
               78-710
               

               Cow position:
               chr14:25894942-25895574 (view UCSC Genome Browser custom track)
               

               Alignm length:
               637
               

               Alignm identity:
               389
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 27
               

               Conread position:
               81-709
               

               Cow position:
               chr14:3080763-3080135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               630
               

               Alignm identity:
               387
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               403, 397
               

               Conread position:
               82-583
               

               Cow position:
               chr14:3155982-3156483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               504
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               295, 304
               

               Conread position:
               82-676
               

               Cow position:
               chr14:25895786-25896380 (view UCSC Genome Browser custom track)
               

               Alignm length:
               600
               

               Alignm identity:
               366
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               54, 46
               

               Conread position:
               82-709
               

               Cow position:
               chr14:680475-681102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               629
               

               Alignm identity:
               382
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               534, 549
               

               Conread position:
               82-709
               

               Cow position:
               chr14:25859688-25860316 (view UCSC Genome Browser custom track)
               

               Alignm length:
               632
               

               Alignm identity:
               406
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               221, 231
               

               Conread position:
               82-710
               

               Cow position:
               chr14:3080930-3080302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               633
               

               Alignm identity:
               396
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 32
               

               Conread position:
               82-710
               

               Cow position:
               chr14:3128022-3127394 (view UCSC Genome Browser custom track)
               

               Alignm length:
               630
               

               Alignm identity:
               410
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               565, 570
               

               Conread position:
               82-712
               

               Cow position:
               chr14:25859520-25860150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               634
               

               Alignm identity:
               405
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 65
               

               Conread position:
               82-712
               

               Cow position:
               chr14:25876571-25877201 (view UCSC Genome Browser custom track)
               

               Alignm length:
               633
               

               Alignm identity:
               403
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 66
               

               Conread position:
               83-710
               

               Cow position:
               chr14:3101418-3100797 (view UCSC Genome Browser custom track)
               

               Alignm length:
               630
               

               Alignm identity:
               382
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               209, 86
               

               Conread position:
               83-712
               

               Cow position:
               chr14:3128105-3127476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               631
               

               Alignm identity:
               405
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               401, 396
               

               Conread position:
               83-715
               

               Cow position:
               chr14:25783345-25783977 (view UCSC Genome Browser custom track)
               

               Alignm length:
               637
               

               Alignm identity:
               416
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               138, 127
               

               Conread position:
               84-545
               

               Cow position:
               chr14:25910833-25911294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               285
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               41, 64
               

               Conread position:
               84-658
               

               Cow position:
               chr14:3061235-3060661 (view UCSC Genome Browser custom track)
               

               Alignm length:
               578
               

               Alignm identity:
               340
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               313, 291
               

               Conread position:
               84-668
               

               Cow position:
               chr14:3155900-3156484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               587
               

               Alignm identity:
               388
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 35
               

               Conread position:
               84-708
               

               Cow position:
               chr14:25895200-25895825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               629
               

               Alignm identity:
               382
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 39
               

               Conread position:
               84-710
               

               Cow position:
               chr14:3061655-3061029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               630
               

               Alignm identity:
               369
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               195, 203
               

               Conread position:
               84-710
               

               Cow position:
               chr14:3080340-3079714 (view UCSC Genome Browser custom track)
               

               Alignm length:
               629
               

               Alignm identity:
               393
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               293, 301
               

               Conread position:
               84-710
               

               Cow position:
               chr14:3080844-3080218 (view UCSC Genome Browser custom track)
               

               Alignm length:
               630
               

               Alignm identity:
               399
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 80
               

               Conread position:
               84-710
               

               Cow position:
               chr14:3101001-3100377 (view UCSC Genome Browser custom track)
               

               Alignm length:
               630
               

               Alignm identity:
               389
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               137, 117
               

               Conread position:
               86-703
               

               Cow position:
               chr14:25795094-25794477 (view UCSC Genome Browser custom track)
               

               Alignm length:
               619
               

               Alignm identity:
               394
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               375, 397
               

               Conread position:
               86-710
               

               Cow position:
               chr14:25795010-25794386 (view UCSC Genome Browser custom track)
               

               Alignm length:
               628
               

               Alignm identity:
               418
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 47
               

               Conread position:
               86-713
               

               Cow position:
               chr14:25795262-25794635 (view UCSC Genome Browser custom track)
               

               Alignm length:
               631
               

               Alignm identity:
               402
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               221, 197
               

               Conread position:
               87-709
               

               Cow position:
               chr14:25783433-25784055 (view UCSC Genome Browser custom track)
               

               Alignm length:
               623
               

               Alignm identity:
               404
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               94-710
               

               Cow position:
               chr14:3128177-3127562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               620
               

               Alignm identity:
               395
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               195, 5
               

               Conread position:
               106-543
               

               Cow position:
               chr14:680835-681272 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               106-628
               

               Cow position:
               chr14:680751-681273 (view UCSC Genome Browser custom track)
               

               Alignm length:
               525
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               126, 116
               

               Conread position:
               106-708
               

               Cow position:
               chr14:680583-681186 (view UCSC Genome Browser custom track)
               

               Alignm length:
               605
               

               Alignm identity:
               375
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               271, 286
               

               Conread position:
               106-710
               

               Cow position:
               chr14:3061717-3061113 (view UCSC Genome Browser custom track)
               

               Alignm length:
               608
               

               Alignm identity:
               361
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               191, 178
               

               Conread position:
               107-710
               

               Cow position:
               chr14:3061380-3060777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               610
               

               Alignm identity:
               355
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               108, 125
               

               Conread position:
               108-656
               

               Cow position:
               chr14:3080232-3079684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               550
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               376, 370
               

               Conread position:
               108-657
               

               Cow position:
               chr14:433836-434385 (view UCSC Genome Browser custom track)
               

               Alignm length:
               552
               

               Alignm identity:
               320
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               96, 89
               

               Conread position:
               130-586
               

               Cow position:
               chr14:433942-434399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               278
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               102, 92
               

               Conread position:
               132-700
               

               Cow position:
               chr14:447555-448123 (view UCSC Genome Browser custom track)
               

               Alignm length:
               569
               

               Alignm identity:
               357
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               138-709
               

               Cow position:
               chr14:25783316-25783887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               572
               

               Alignm identity:
               382
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               145-710
               

               Cow position:
               chr14:3155877-3156442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               570
               

               Alignm identity:
               360
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               90, 59
               

               Conread position:
               146-676
               

               Cow position:
               chr14:3155308-3155835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               532
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               338, 56
               

               Conread position:
               147-700
               

               Cow position:
               chr14:3101438-3100889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               556
               

               Alignm identity:
               343
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               61, 67
               

               Conread position:
               147-709
               

               Cow position:
               chr14:25795453-25794891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               565
               

               Alignm identity:
               366
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 137
               

               Conread position:
               147-709
               

               Cow position:
               chr14:25859249-25859812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               566
               

               Alignm identity:
               361
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               328, 336
               

               Conread position:
               148-710
               

               Cow position:
               chr14:3128208-3127646 (view UCSC Genome Browser custom track)
               

               Alignm length:
               564
               

               Alignm identity:
               357
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               229, 243
               

               Conread position:
               153-708
               

               Cow position:
               chr14:25910738-25911290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               561
               

               Alignm identity:
               347
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               129, 62
               

               Conread position:
               156-710
               

               Cow position:
               chr14:25876225-25876779 (view UCSC Genome Browser custom track)
               

               Alignm length:
               561
               

               Alignm identity:
               348
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               72, 63
               

               Conread position:
               159-710
               

               Cow position:
               chr14:25895443-25895994 (view UCSC Genome Browser custom track)
               

               Alignm length:
               554
               

               Alignm identity:
               334
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               117, 112
               

               Conread position:
               163-594
               

               Cow position:
               chr14:3155406-3155837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               275
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               131, 121
               

               Conread position:
               166-710
               

               Cow position:
               chr14:3081016-3080470 (view UCSC Genome Browser custom track)
               

               Alignm length:
               550
               

               Alignm identity:
               333
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               15, 49
               

               Conread position:
               183-709
               

               Cow position:
               chr14:25876336-25876863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               529
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               291, 301
               

               Conread position:
               211-719
               

               Cow position:
               chr14:25795472-25794966 (view UCSC Genome Browser custom track)
               

               Alignm length:
               513
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 7
               

               Conread position:
               218-710
               

               Cow position:
               chr14:25783312-25783804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               494
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 66
               

               Conread position:
               239-704
               

               Cow position:
               chr14:25859173-25859638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               274, 288
               

               Conread position:
               240-710
               

               Cow position:
               chr14:433884-434354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               271
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               153, 147
               

               Conread position:
               241-708
               

               Cow position:
               chr14:25910742-25911206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               297
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               136, 53
               

               Conread position:
               242-710
               

               Cow position:
               chr14:680215-680683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               270
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               252-710
               

               Cow position:
               chr14:3155900-3156358 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 32
               

               Conread position:
               258-710
               

               Cow position:
               chr14:447513-447965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               279
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               300, 306
               

               Conread position:
               314-710
               

               Cow position:
               chr14:3155389-3155785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               246
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               251, 241
               

               Conread position:
               321-710
               

               Cow position:
               chr14:25910738-25911123 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               248
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               154, 56
               

               Conread position:
               357-712
               

               Cow position:
               chr14:3061718-3061363 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               220
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               294, 289
               

               Conread position:
               405-664
               

               Cow position:
               chr14:420630-420889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               163
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               407-708
               

               Cow position:
               chr14:25859173-25859475 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               189
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               296, 0
               

               Conread position:
               417-710
               

               Cow position:
               chr14:3155408-3155701 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               195
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               357-658
               

               Cow position:
               chr15:5494093-5494401 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               208
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               124, 74
               

               Conread position:
               1-598
               

               Cow position:
               chr16:14627330-14626733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               599
               

               Alignm identity:
               387
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               471, 477
               

               Conread position:
               3-709
               

               Cow position:
               chr16:14627664-14626958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               709
               

               Alignm identity:
               454
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 39
               

               Conread position:
               7-710
               

               Cow position:
               chr16:14627744-14627041 (view UCSC Genome Browser custom track)
               

               Alignm length:
               705
               

               Alignm identity:
               441
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               302, 309
               

               Conread position:
               65-709
               

               Cow position:
               chr16:14627518-14626874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               648
               

               Alignm identity:
               441
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 65
               

               Conread position:
               65-710
               

               Cow position:
               chr16:14627770-14627125 (view UCSC Genome Browser custom track)
               

               Alignm length:
               647
               

               Alignm identity:
               428
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               233, 219
               

               Conread position:
               65-712
               

               Cow position:
               chr16:14627434-14626787 (view UCSC Genome Browser custom track)
               

               Alignm length:
               648
               

               Alignm identity:
               428
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               67-518
               

               Cow position:
               chr16:14627180-14626729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               67-682
               

               Cow position:
               chr16:14627348-14626733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               617
               

               Alignm identity:
               412
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               142, 150
               

               Conread position:
               82-709
               

               Cow position:
               chr16:14627837-14627210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               632
               

               Alignm identity:
               425
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               219, 213
               

               Conread position:
               86-708
               

               Cow position:
               chr16:14627917-14627294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               626
               

               Alignm identity:
               401
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               370, 394
               

               Conread position:
               142-710
               

               Cow position:
               chr16:14627945-14627377 (view UCSC Genome Browser custom track)
               

               Alignm length:
               570
               

               Alignm identity:
               361
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               327, 321
               

               Conread position:
               246-714
               

               Cow position:
               chr16:14627925-14627457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               215, 241
               

               Conread position:
               455-710
               

               Cow position:
               chr16:14627968-14627713 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               164
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-361
               

               Cow position:
               chr17:22551841-22551481 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-520
               

               Cow position:
               chr17:22552009-22551490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               520
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-591
               

               Cow position:
               chr17:22589763-22589173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               591
               

               Alignm identity:
               400
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-682
               

               Cow position:
               chr17:22552177-22551496 (view UCSC Genome Browser custom track)
               

               Alignm length:
               683
               

               Alignm identity:
               470
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               465, 459
               

               Conread position:
               1-706
               

               Cow position:
               chr17:22590099-22589394 (view UCSC Genome Browser custom track)
               

               Alignm length:
               707
               

               Alignm identity:
               458
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               297, 290
               

               Conread position:
               2-683
               

               Cow position:
               chr17:22552596-22551915 (view UCSC Genome Browser custom track)
               

               Alignm length:
               684
               

               Alignm identity:
               473
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 26
               

               Conread position:
               3-709
               

               Cow position:
               chr17:22552763-22552057 (view UCSC Genome Browser custom track)
               

               Alignm length:
               709
               

               Alignm identity:
               494
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               376, 397
               

               Conread position:
               3-709
               

               Cow position:
               chr17:22553099-22552393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               708
               

               Alignm identity:
               488
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               312, 308
               

               Conread position:
               3-710
               

               Cow position:
               chr17:22552427-22551720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               709
               

               Alignm identity:
               501
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               312, 308
               

               Conread position:
               7-521
               

               Cow position:
               chr17:22452120-22451606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               518
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 27
               

               Conread position:
               7-673
               

               Cow position:
               chr17:22589841-22589175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               670
               

               Alignm identity:
               444
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               291, 277
               

               Conread position:
               7-674
               

               Cow position:
               chr17:22452372-22451705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               671
               

               Alignm identity:
               443
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 22
               

               Conread position:
               7-699
               

               Cow position:
               chr17:22499386-22498694 (view UCSC Genome Browser custom track)
               

               Alignm length:
               694
               

               Alignm identity:
               450
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               623, 631
               

               Conread position:
               7-710
               

               Cow position:
               chr17:22552507-22551804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               704
               

               Alignm identity:
               483
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               10-609
               

               Cow position:
               chr17:22499047-22498457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               601
               

               Alignm identity:
               376
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 32
               

               Conread position:
               10-615
               

               Cow position:
               chr17:22473346-22473952 (view UCSC Genome Browser custom track)
               

               Alignm length:
               609
               

               Alignm identity:
               400
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 33
               

               Conread position:
               10-689
               

               Cow position:
               chr17:22499299-22498620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               681
               

               Alignm identity:
               436
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               291, 274
               

               Conread position:
               10-709
               

               Cow position:
               chr17:22552840-22552141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               700
               

               Alignm identity:
               485
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               10-709
               

               Cow position:
               chr17:22590174-22589474 (view UCSC Genome Browser custom track)
               

               Alignm length:
               701
               

               Alignm identity:
               466
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               694, 0
               

               Conread position:
               10-710
               

               Cow position:
               chr17:22589922-22589222 (view UCSC Genome Browser custom track)
               

               Alignm length:
               702
               

               Alignm identity:
               471
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               199, 208
               

               Conread position:
               11-278
               

               Cow position:
               chr17:22551747-22551480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               11-710
               

               Cow position:
               chr17:22552335-22551636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               702
               

               Alignm identity:
               482
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               364, 374
               

               Conread position:
               11-710
               

               Cow position:
               chr17:22552671-22551972 (view UCSC Genome Browser custom track)
               

               Alignm length:
               702
               

               Alignm identity:
               486
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               304, 300
               

               Conread position:
               11-710
               

               Cow position:
               chr17:22590257-22589558 (view UCSC Genome Browser custom track)
               

               Alignm length:
               702
               

               Alignm identity:
               484
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 22
               

               Conread position:
               15-709
               

               Cow position:
               chr17:22590001-22589307 (view UCSC Genome Browser custom track)
               

               Alignm length:
               698
               

               Alignm identity:
               465
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               362, 385
               

               Conread position:
               21-710
               

               Cow position:
               chr17:22552997-22552308 (view UCSC Genome Browser custom track)
               

               Alignm length:
               690
               

               Alignm identity:
               469
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               25-716
               

               Cow position:
               chr17:22552909-22552219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               694
               

               Alignm identity:
               479
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 32
               

               Conread position:
               43-710
               

               Cow position:
               chr17:22553143-22552476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               669
               

               Alignm identity:
               453
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               332, 342
               

               Conread position:
               65-446
               

               Cow position:
               chr17:22551861-22551480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               65-598
               

               Cow position:
               chr17:22499076-22498543 (view UCSC Genome Browser custom track)
               

               Alignm length:
               534
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               65-700
               

               Cow position:
               chr17:22452398-22451763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               639
               

               Alignm identity:
               422
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               312, 320
               

               Conread position:
               66-709
               

               Cow position:
               chr17:22590286-22589643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               645
               

               Alignm identity:
               435
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               405, 414
               

               Conread position:
               66-710
               

               Cow position:
               chr17:22552196-22551552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               645
               

               Alignm identity:
               465
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               76-683
               

               Cow position:
               chr17:22499149-22498542 (view UCSC Genome Browser custom track)
               

               Alignm length:
               611
               

               Alignm identity:
               399
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               224, 208
               

               Conread position:
               81-709
               

               Cow position:
               chr17:22473333-22473963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               632
               

               Alignm identity:
               413
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               219, 210
               

               Conread position:
               82-683
               

               Cow position:
               chr17:22452213-22451612 (view UCSC Genome Browser custom track)
               

               Alignm length:
               605
               

               Alignm identity:
               397
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               295, 303
               

               Conread position:
               84-710
               

               Cow position:
               chr17:22499393-22498767 (view UCSC Genome Browser custom track)
               

               Alignm length:
               628
               

               Alignm identity:
               409
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               385, 379
               

               Conread position:
               98-710
               

               Cow position:
               chr17:22473266-22473878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               614
               

               Alignm identity:
               393
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               371, 363
               

               Conread position:
               106-710
               

               Cow position:
               chr17:41440931-41440327 (view UCSC Genome Browser custom track)
               

               Alignm length:
               607
               

               Alignm identity:
               344
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               269, 279
               

               Conread position:
               106-710
               

               Cow position:
               chr17:41441099-41440495 (view UCSC Genome Browser custom track)
               

               Alignm length:
               608
               

               Alignm identity:
               360
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               226, 233
               

               Conread position:
               132-712
               

               Cow position:
               chr17:22590304-22589724 (view UCSC Genome Browser custom track)
               

               Alignm length:
               581
               

               Alignm identity:
               389
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               136-710
               

               Cow position:
               chr17:22452411-22451837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               577
               

               Alignm identity:
               391
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               159, 148
               

               Conread position:
               146-715
               

               Cow position:
               chr17:22473233-22473798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               573
               

               Alignm identity:
               371
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               326, 30
               

               Conread position:
               163-710
               

               Cow position:
               chr17:22499398-22498851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               548
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               171-710
               

               Cow position:
               chr17:41441118-41440579 (view UCSC Genome Browser custom track)
               

               Alignm length:
               541
               

               Alignm identity:
               304
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               480, 474
               

               Conread position:
               215-709
               

               Cow position:
               chr17:22590305-22589811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               496
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 72
               

               Conread position:
               272-716
               

               Cow position:
               chr17:22553166-22552723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               290, 296
               

               Conread position:
               1-256
               

               Cow position:
               chr18:51873703-51873959 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               167
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               10, 40
               

               Conread position:
               1-265
               

               Cow position:
               chr18:56247313-56247053 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               168
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               167, 0
               

               Conread position:
               1-329
               

               Cow position:
               chr18:22634896-22635224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               212
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               39, 32
               

               Conread position:
               1-412
               

               Cow position:
               chr18:42674813-42674402 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               302, 283
               

               Conread position:
               1-426
               

               Cow position:
               chr18:44184378-44183953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               269
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-430
               

               Cow position:
               chr18:33064010-33063581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               273
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               124, 129
               

               Conread position:
               1-499
               

               Cow position:
               chr18:49022818-49023316 (view UCSC Genome Browser custom track)
               

               Alignm length:
               502
               

               Alignm identity:
               310
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               110, 104
               

               Conread position:
               1-510
               

               Cow position:
               chr18:41198251-41198760 (view UCSC Genome Browser custom track)
               

               Alignm length:
               514
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 51
               

               Conread position:
               1-542
               

               Cow position:
               chr18:50083706-50084247 (view UCSC Genome Browser custom track)
               

               Alignm length:
               542
               

               Alignm identity:
               372
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-546
               

               Cow position:
               chr18:43120067-43119522 (view UCSC Genome Browser custom track)
               

               Alignm length:
               548
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 50
               

               Conread position:
               1-581
               

               Cow position:
               chr18:49032622-49032042 (view UCSC Genome Browser custom track)
               

               Alignm length:
               583
               

               Alignm identity:
               367
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               280, 288
               

               Conread position:
               1-589
               

               Cow position:
               chr18:53560182-53560770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               592
               

               Alignm identity:
               390
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 50
               

               Conread position:
               1-590
               

               Cow position:
               chr18:42744377-42743788 (view UCSC Genome Browser custom track)
               

               Alignm length:
               592
               

               Alignm identity:
               394
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 143
               

               Conread position:
               1-598
               

               Cow position:
               chr18:55523732-55524329 (view UCSC Genome Browser custom track)
               

               Alignm length:
               601
               

               Alignm identity:
               370
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               297, 306
               

               Conread position:
               1-600
               

               Cow position:
               chr18:1418006-1418606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               602
               

               Alignm identity:
               418
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               376, 381
               

               Conread position:
               1-605
               

               Cow position:
               chr18:43175100-43174496 (view UCSC Genome Browser custom track)
               

               Alignm length:
               609
               

               Alignm identity:
               405
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 43
               

               Conread position:
               1-666
               

               Cow position:
               chr18:50048799-50048140 (view UCSC Genome Browser custom track)
               

               Alignm length:
               668
               

               Alignm identity:
               422
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 28
               

               Conread position:
               1-673
               

               Cow position:
               chr18:53498481-53499145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               678
               

               Alignm identity:
               418
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               126, 44
               

               Conread position:
               1-674
               

               Cow position:
               chr18:44398183-44397510 (view UCSC Genome Browser custom track)
               

               Alignm length:
               679
               

               Alignm identity:
               446
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               290, 283
               

               Conread position:
               1-677
               

               Cow position:
               chr18:50295192-50295868 (view UCSC Genome Browser custom track)
               

               Alignm length:
               680
               

               Alignm identity:
               440
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 133
               

               Conread position:
               1-683
               

               Cow position:
               chr18:42791472-42792154 (view UCSC Genome Browser custom track)
               

               Alignm length:
               685
               

               Alignm identity:
               471
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               376, 381
               

               Conread position:
               1-684
               

               Cow position:
               chr18:40324543-40323866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               687
               

               Alignm identity:
               443
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 9
               

               Conread position:
               1-691
               

               Cow position:
               chr18:55067022-55066334 (view UCSC Genome Browser custom track)
               

               Alignm length:
               696
               

               Alignm identity:
               446
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 55
               

               Conread position:
               1-693
               

               Cow position:
               chr18:55018220-55018909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               702
               

               Alignm identity:
               447
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 63
               

               Conread position:
               1-700
               

               Cow position:
               chr18:54993160-54993859 (view UCSC Genome Browser custom track)
               

               Alignm length:
               709
               

               Alignm identity:
               468
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 32
               

               Conread position:
               1-703
               

               Cow position:
               chr18:42791221-42791922 (view UCSC Genome Browser custom track)
               

               Alignm length:
               704
               

               Alignm identity:
               475
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               374, 9
               

               Conread position:
               1-703
               

               Cow position:
               chr18:42791976-42792678 (view UCSC Genome Browser custom track)
               

               Alignm length:
               703
               

               Alignm identity:
               487
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-703
               

               Cow position:
               chr18:54967123-54967822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               712
               

               Alignm identity:
               453
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 32
               

               Conread position:
               1-703
               

               Cow position:
               chr18:54979648-54980350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               708
               

               Alignm identity:
               451
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 51
               

               Conread position:
               1-703
               

               Cow position:
               chr18:54992992-54993694 (view UCSC Genome Browser custom track)
               

               Alignm length:
               705
               

               Alignm identity:
               433
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               213, 203
               

               Conread position:
               1-703
               

               Cow position:
               chr18:55017968-55018670 (view UCSC Genome Browser custom track)
               

               Alignm length:
               708
               

               Alignm identity:
               465
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 32
               

               Conread position:
               1-703
               

               Cow position:
               chr18:56434057-56434751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               707
               

               Alignm identity:
               437
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 33
               

               Conread position:
               1-704
               

               Cow position:
               chr18:55523480-55524183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               708
               

               Alignm identity:
               448
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               373, 389
               

               Conread position:
               1-706
               

               Cow position:
               chr18:53586911-53586206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               709
               

               Alignm identity:
               455
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 41
               

               Conread position:
               1-708
               

               Cow position:
               chr18:44253635-44252942 (view UCSC Genome Browser custom track)
               

               Alignm length:
               709
               

               Alignm identity:
               446
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               617, 262
               

               Conread position:
               1-709
               

               Cow position:
               chr18:41197663-41198371 (view UCSC Genome Browser custom track)
               

               Alignm length:
               713
               

               Alignm identity:
               496
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 28
               

               Conread position:
               1-709
               

               Cow position:
               chr18:41197831-41198539 (view UCSC Genome Browser custom track)
               

               Alignm length:
               711
               

               Alignm identity:
               501
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               219, 223
               

               Conread position:
               1-709
               

               Cow position:
               chr18:41949260-41948552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               711
               

               Alignm identity:
               474
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               300, 283
               

               Conread position:
               1-709
               

               Cow position:
               chr18:42744545-42743837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               711
               

               Alignm identity:
               504
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 41
               

               Conread position:
               1-709
               

               Cow position:
               chr18:42744629-42743921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               713
               

               Alignm identity:
               489
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 41
               

               Conread position:
               1-709
               

               Cow position:
               chr18:42837848-42837140 (view UCSC Genome Browser custom track)
               

               Alignm length:
               711
               

               Alignm identity:
               479
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 43
               

               Conread position:
               1-709
               

               Cow position:
               chr18:42985304-42984596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               712
               

               Alignm identity:
               468
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               304, 283
               

               Conread position:
               1-709
               

               Cow position:
               chr18:42985556-42984848 (view UCSC Genome Browser custom track)
               

               Alignm length:
               714
               

               Alignm identity:
               469
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 43
               

               Conread position:
               1-709
               

               Cow position:
               chr18:43022898-43022191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               710
               

               Alignm identity:
               468
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 9
               

               Conread position:
               1-709
               

               Cow position:
               chr18:50848171-50848879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               712
               

               Alignm identity:
               470
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               134, 125
               

               Conread position:
               1-709
               

               Cow position:
               chr18:54967207-54967912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               714
               

               Alignm identity:
               450
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 86
               

               Conread position:
               1-709
               

               Cow position:
               chr18:54992740-54993448 (view UCSC Genome Browser custom track)
               

               Alignm length:
               715
               

               Alignm identity:
               469
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 50
               

               Conread position:
               1-709
               

               Cow position:
               chr18:54993076-54993784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               717
               

               Alignm identity:
               466
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 32
               

               Conread position:
               1-710
               

               Cow position:
               chr18:40074943-40075652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               717
               

               Alignm identity:
               456
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 66
               

               Conread position:
               1-710
               

               Cow position:
               chr18:42791053-42791761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               715
               

               Alignm identity:
               486
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 9
               

               Conread position:
               1-710
               

               Cow position:
               chr18:42791724-42792433 (view UCSC Genome Browser custom track)
               

               Alignm length:
               713
               

               Alignm identity:
               507
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               207, 214
               

               Conread position:
               1-710
               

               Cow position:
               chr18:43167628-43168337 (view UCSC Genome Browser custom track)
               

               Alignm length:
               712
               

               Alignm identity:
               461
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 28
               

               Conread position:
               1-710
               

               Cow position:
               chr18:44398267-44397558 (view UCSC Genome Browser custom track)
               

               Alignm length:
               711
               

               Alignm identity:
               472
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               376, 384
               

               Conread position:
               1-710
               

               Cow position:
               chr18:50059115-50058408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               710
               

               Alignm identity:
               463
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               615, 0
               

               Conread position:
               1-710
               

               Cow position:
               chr18:55008647-55009354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               717
               

               Alignm identity:
               453
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 32
               

               Conread position:
               1-710
               

               Cow position:
               chr18:56128377-56129086 (view UCSC Genome Browser custom track)
               

               Alignm length:
               712
               

               Alignm identity:
               442
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 50
               

               Conread position:
               1-710
               

               Cow position:
               chr18:56248155-56247440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               727
               

               Alignm identity:
               463
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 28
               

               Conread position:
               1-712
               

               Cow position:
               chr18:50848255-50848966 (view UCSC Genome Browser custom track)
               

               Alignm length:
               713
               

               Alignm identity:
               515
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 48
               

               Conread position:
               1-713
               

               Cow position:
               chr18:54967708-54968418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               718
               

               Alignm identity:
               459
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 32
               

               Conread position:
               1-715
               

               Cow position:
               chr18:42791808-42792521 (view UCSC Genome Browser custom track)
               

               Alignm length:
               717
               

               Alignm identity:
               499
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 54
               

               Conread position:
               1-715
               

               Cow position:
               chr18:44154279-44153583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               715
               

               Alignm identity:
               460
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               297, 0
               

               Conread position:
               1-720
               

               Cow position:
               chr18:54979480-54980202 (view UCSC Genome Browser custom track)
               

               Alignm length:
               727
               

               Alignm identity:
               459
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 85
               

               Conread position:
               2-272
               

               Cow position:
               chr18:55524068-55524339 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               9, 49
               

               Conread position:
               2-348
               

               Cow position:
               chr18:53571983-53572317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               224
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               9, 17
               

               Conread position:
               2-523
               

               Cow position:
               chr18:53586407-53585885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               526
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 46
               

               Conread position:
               2-541
               

               Cow position:
               chr18:56434385-56434925 (view UCSC Genome Browser custom track)
               

               Alignm length:
               545
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 44
               

               Conread position:
               2-562
               

               Cow position:
               chr18:42959959-42959407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               564
               

               Alignm identity:
               367
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 124
               

               Conread position:
               2-590
               

               Cow position:
               chr18:53586574-53585986 (view UCSC Genome Browser custom track)
               

               Alignm length:
               594
               

               Alignm identity:
               386
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 54
               

               Conread position:
               2-593
               

               Cow position:
               chr18:40075111-40075703 (view UCSC Genome Browser custom track)
               

               Alignm length:
               595
               

               Alignm identity:
               384
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 43
               

               Conread position:
               2-625
               

               Cow position:
               chr18:53525864-53526486 (view UCSC Genome Browser custom track)
               

               Alignm length:
               629
               

               Alignm identity:
               389
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 147
               

               Conread position:
               2-676
               

               Cow position:
               chr18:40075028-40075702 (view UCSC Genome Browser custom track)
               

               Alignm length:
               679
               

               Alignm identity:
               446
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 49
               

               Conread position:
               2-705
               

               Cow position:
               chr18:50022398-50021689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               713
               

               Alignm identity:
               470
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 50
               

               Conread position:
               2-708
               

               Cow position:
               chr18:50098981-50099687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               710
               

               Alignm identity:
               490
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               209, 5
               

               Conread position:
               2-708
               

               Cow position:
               chr18:55523564-55524271 (view UCSC Genome Browser custom track)
               

               Alignm length:
               712
               

               Alignm identity:
               454
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 116
               

               Conread position:
               2-709
               

               Cow position:
               chr18:53560098-53560803 (view UCSC Genome Browser custom track)
               

               Alignm length:
               714
               

               Alignm identity:
               470
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 46
               

               Conread position:
               2-710
               

               Cow position:
               chr18:50245999-50246706 (view UCSC Genome Browser custom track)
               

               Alignm length:
               712
               

               Alignm identity:
               465
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 5
               

               Conread position:
               2-710
               

               Cow position:
               chr18:50848507-50849216 (view UCSC Genome Browser custom track)
               

               Alignm length:
               712
               

               Alignm identity:
               482
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 51
               

               Conread position:
               2-710
               

               Cow position:
               chr18:53636124-53635415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               711
               

               Alignm identity:
               449
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 375
               

               Conread position:
               2-710
               

               Cow position:
               chr18:56128041-56128750 (view UCSC Genome Browser custom track)
               

               Alignm length:
               710
               

               Alignm identity:
               436
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               3-261
               

               Cow position:
               chr18:41948586-41948327 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               166
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               252, 0
               

               Conread position:
               3-329
               

               Cow position:
               chr18:43093076-43092752 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               215
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               47, 42
               

               Conread position:
               3-348
               

               Cow position:
               chr18:56329173-56328828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               210
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-454
               

               Cow position:
               chr18:43048722-43048272 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 39
               

               Conread position:
               3-464
               

               Cow position:
               chr18:51874230-51874691 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               284
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               212, 200
               

               Conread position:
               3-507
               

               Cow position:
               chr18:43022477-43021973 (view UCSC Genome Browser custom track)
               

               Alignm length:
               506
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 41
               

               Conread position:
               3-507
               

               Cow position:
               chr18:43168050-43168554 (view UCSC Genome Browser custom track)
               

               Alignm length:
               506
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 26
               

               Conread position:
               3-535
               

               Cow position:
               chr18:44253310-44252789 (view UCSC Genome Browser custom track)
               

               Alignm length:
               533
               

               Alignm identity:
               328
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               195, 0
               

               Conread position:
               3-541
               

               Cow position:
               chr18:50030976-50030436 (view UCSC Genome Browser custom track)
               

               Alignm length:
               544
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               179, 38
               

               Conread position:
               3-589
               

               Cow position:
               chr18:44184544-44183958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               589
               

               Alignm identity:
               395
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 53
               

               Conread position:
               3-590
               

               Cow position:
               chr18:55497616-55497029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               593
               

               Alignm identity:
               347
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               74, 44
               

               Conread position:
               3-598
               

               Cow position:
               chr18:33064176-33063581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               598
               

               Alignm identity:
               385
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 49
               

               Conread position:
               3-598
               

               Cow position:
               chr18:52447786-52448382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               598
               

               Alignm identity:
               395
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               140, 145
               

               Conread position:
               3-669
               

               Cow position:
               chr18:42985134-42984468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               671
               

               Alignm identity:
               436
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 38
               

               Conread position:
               3-669
               

               Cow position:
               chr18:44240183-44240849 (view UCSC Genome Browser custom track)
               

               Alignm length:
               669
               

               Alignm identity:
               427
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 30
               

               Conread position:
               3-670
               

               Cow position:
               chr18:56329509-56328842 (view UCSC Genome Browser custom track)
               

               Alignm length:
               669
               

               Alignm identity:
               431
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               374, 388
               

               Conread position:
               3-676
               

               Cow position:
               chr18:14454014-14453341 (view UCSC Genome Browser custom track)
               

               Alignm length:
               678
               

               Alignm identity:
               426
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 37
               

               Conread position:
               3-677
               

               Cow position:
               chr18:50022058-50021382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               683
               

               Alignm identity:
               445
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 43
               

               Conread position:
               3-678
               

               Cow position:
               chr18:50281680-50282355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               678
               

               Alignm identity:
               429
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 137
               

               Conread position:
               3-679
               

               Cow position:
               chr18:50099653-50100329 (view UCSC Genome Browser custom track)
               

               Alignm length:
               681
               

               Alignm identity:
               448
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               204, 220
               

               Conread position:
               3-679
               

               Cow position:
               chr18:56128631-56129305 (view UCSC Genome Browser custom track)
               

               Alignm length:
               680
               

               Alignm identity:
               428
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               372, 383
               

               Conread position:
               3-679
               

               Cow position:
               chr18:56247723-56247059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               680
               

               Alignm identity:
               442
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               457, 201
               

               Conread position:
               3-700
               

               Cow position:
               chr18:43093904-43093219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               700
               

               Alignm identity:
               476
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 41
               

               Conread position:
               3-700
               

               Cow position:
               chr18:53509328-53510023 (view UCSC Genome Browser custom track)
               

               Alignm length:
               703
               

               Alignm identity:
               444
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 38
               

               Conread position:
               3-702
               

               Cow position:
               chr18:53610377-53609679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               700
               

               Alignm identity:
               429
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               669, 0
               

               Conread position:
               3-703
               

               Cow position:
               chr18:42675147-42674447 (view UCSC Genome Browser custom track)
               

               Alignm length:
               705
               

               Alignm identity:
               466
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               206, 216
               

               Conread position:
               3-706
               

               Cow position:
               chr18:49033208-49032505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               707
               

               Alignm identity:
               445
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               288, 281
               

               Conread position:
               3-708
               

               Cow position:
               chr18:53525782-53526486 (view UCSC Genome Browser custom track)
               

               Alignm length:
               712
               

               Alignm identity:
               450
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 37
               

               Conread position:
               3-709
               

               Cow position:
               chr18:40086340-40085643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               714
               

               Alignm identity:
               464
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               183, 125
               

               Conread position:
               3-709
               

               Cow position:
               chr18:40306259-40306965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               710
               

               Alignm identity:
               451
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 30
               

               Conread position:
               3-709
               

               Cow position:
               chr18:42693706-42692999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               716
               

               Alignm identity:
               431
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               66, 55
               

               Conread position:
               3-709
               

               Cow position:
               chr18:42837930-42837224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               707
               

               Alignm identity:
               466
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-709
               

               Cow position:
               chr18:42960125-42959428 (view UCSC Genome Browser custom track)
               

               Alignm length:
               711
               

               Alignm identity:
               453
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 139
               

               Conread position:
               3-709
               

               Cow position:
               chr18:42985218-42984512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               710
               

               Alignm identity:
               475
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               134, 122
               

               Conread position:
               3-709
               

               Cow position:
               chr18:43167714-43168420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               712
               

               Alignm identity:
               486
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 48
               

               Conread position:
               3-709
               

               Cow position:
               chr18:44240015-44240721 (view UCSC Genome Browser custom track)
               

               Alignm length:
               709
               

               Alignm identity:
               463
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               388, 383
               

               Conread position:
               3-709
               

               Cow position:
               chr18:50848761-50849468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               708
               

               Alignm identity:
               478
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               698, 0
               

               Conread position:
               3-709
               

               Cow position:
               chr18:52447534-52448240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               709
               

               Alignm identity:
               479
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               140, 145
               

               Conread position:
               3-709
               

               Cow position:
               chr18:53559763-53560470 (view UCSC Genome Browser custom track)
               

               Alignm length:
               710
               

               Alignm identity:
               447
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 213
               

               Conread position:
               3-709
               

               Cow position:
               chr18:53635618-53634913 (view UCSC Genome Browser custom track)
               

               Alignm length:
               712
               

               Alignm identity:
               451
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 55
               

               Conread position:
               3-709
               

               Cow position:
               chr18:56128127-56128833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               708
               

               Alignm identity:
               445
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               145, 140
               

               Conread position:
               3-710
               

               Cow position:
               chr18:33064932-33064225 (view UCSC Genome Browser custom track)
               

               Alignm length:
               714
               

               Alignm identity:
               476
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 49
               

               Conread position:
               3-710
               

               Cow position:
               chr18:42792062-42792769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               709
               

               Alignm identity:
               485
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 42
               

               Conread position:
               3-710
               

               Cow position:
               chr18:43093820-43093125 (view UCSC Genome Browser custom track)
               

               Alignm length:
               710
               

               Alignm identity:
               493
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 49
               

               Conread position:
               3-710
               

               Cow position:
               chr18:49033040-49032333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               712
               

               Alignm identity:
               463
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 55
               

               Conread position:
               3-710
               

               Cow position:
               chr18:50059281-50058574 (view UCSC Genome Browser custom track)
               

               Alignm length:
               709
               

               Alignm identity:
               487
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               372, 388
               

               Conread position:
               3-710
               

               Cow position:
               chr18:50059449-50058742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               713
               

               Alignm identity:
               473
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 100
               

               Conread position:
               3-710
               

               Cow position:
               chr18:52447114-52447821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               710
               

               Alignm identity:
               451
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 79
               

               Conread position:
               3-710
               

               Cow position:
               chr18:56329677-56328970 (view UCSC Genome Browser custom track)
               

               Alignm length:
               710
               

               Alignm identity:
               447
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               102, 69
               

               Conread position:
               3-712
               

               Cow position:
               chr18:49032956-49032247 (view UCSC Genome Browser custom track)
               

               Alignm length:
               712
               

               Alignm identity:
               462
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               292, 281
               

               Conread position:
               3-712
               

               Cow position:
               chr18:50848425-50849134 (view UCSC Genome Browser custom track)
               

               Alignm length:
               711
               

               Alignm identity:
               486
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               351, 357
               

               Conread position:
               3-712
               

               Cow position:
               chr18:53635954-53635245 (view UCSC Genome Browser custom track)
               

               Alignm length:
               712
               

               Alignm identity:
               446
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               372, 383
               

               Conread position:
               3-715
               

               Cow position:
               chr18:49032788-49032076 (view UCSC Genome Browser custom track)
               

               Alignm length:
               716
               

               Alignm identity:
               457
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               288, 281
               

               Conread position:
               3-718
               

               Cow position:
               chr18:53636038-53635324 (view UCSC Genome Browser custom track)
               

               Alignm length:
               717
               

               Alignm identity:
               458
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               145, 141
               

               Conread position:
               7-255
               

               Cow position:
               chr18:42674639-42674391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               43, 37
               

               Conread position:
               7-458
               

               Cow position:
               chr18:50083964-50084417 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               291
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               56, 44
               

               Conread position:
               7-508
               

               Cow position:
               chr18:43093240-43092741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               504
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 22
               

               Conread position:
               7-509
               

               Cow position:
               chr18:42744287-42743785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               504
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               462, 456
               

               Conread position:
               7-590
               

               Cow position:
               chr18:42837674-42837091 (view UCSC Genome Browser custom track)
               

               Alignm length:
               587
               

               Alignm identity:
               388
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               202, 210
               

               Conread position:
               7-591
               

               Cow position:
               chr18:43022557-43021973 (view UCSC Genome Browser custom track)
               

               Alignm length:
               587
               

               Alignm identity:
               377
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 38
               

               Conread position:
               7-592
               

               Cow position:
               chr18:41198173-41198758 (view UCSC Genome Browser custom track)
               

               Alignm length:
               589
               

               Alignm identity:
               402
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 35
               

               Conread position:
               7-597
               

               Cow position:
               chr18:41948918-41948327 (view UCSC Genome Browser custom track)
               

               Alignm length:
               592
               

               Alignm identity:
               405
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               584, 0
               

               Conread position:
               7-630
               

               Cow position:
               chr18:42960037-42959423 (view UCSC Genome Browser custom track)
               

               Alignm length:
               625
               

               Alignm identity:
               401
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 44
               

               Conread position:
               7-669
               

               Cow position:
               chr18:42744455-42743793 (view UCSC Genome Browser custom track)
               

               Alignm length:
               664
               

               Alignm identity:
               451
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               294, 277
               

               Conread position:
               7-673
               

               Cow position:
               chr18:50246171-50246837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               670
               

               Alignm identity:
               439
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               202, 214
               

               Conread position:
               7-676
               

               Cow position:
               chr18:33064256-33063587 (view UCSC Genome Browser custom track)
               

               Alignm length:
               673
               

               Alignm identity:
               416
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               387, 382
               

               Conread position:
               7-690
               

               Cow position:
               chr18:43175178-43174495 (view UCSC Genome Browser custom track)
               

               Alignm length:
               688
               

               Alignm identity:
               461
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               384, 372
               

               Conread position:
               7-708
               

               Cow position:
               chr18:50049217-50048512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               709
               

               Alignm identity:
               469
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 33
               

               Conread position:
               7-709
               

               Cow position:
               chr18:40086504-40085812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               707
               

               Alignm identity:
               453
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 51
               

               Conread position:
               7-709
               

               Cow position:
               chr18:41197585-41198287 (view UCSC Genome Browser custom track)
               

               Alignm length:
               705
               

               Alignm identity:
               495
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 22
               

               Conread position:
               7-709
               

               Cow position:
               chr18:42985382-42984680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               706
               

               Alignm identity:
               471
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 41
               

               Conread position:
               7-709
               

               Cow position:
               chr18:43023061-43022359 (view UCSC Genome Browser custom track)
               

               Alignm length:
               707
               

               Alignm identity:
               459
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               296, 277
               

               Conread position:
               7-709
               

               Cow position:
               chr18:43120313-43119611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               709
               

               Alignm identity:
               474
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 26
               

               Conread position:
               7-709
               

               Cow position:
               chr18:43175514-43174812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               705
               

               Alignm identity:
               466
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               204, 190
               

               Conread position:
               7-709
               

               Cow position:
               chr18:44154444-44153746 (view UCSC Genome Browser custom track)
               

               Alignm length:
               708
               

               Alignm identity:
               465
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 386
               

               Conread position:
               7-709
               

               Cow position:
               chr18:44240103-44240805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               705
               

               Alignm identity:
               453
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 117
               

               Conread position:
               7-709
               

               Cow position:
               chr18:44398345-44397643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               704
               

               Alignm identity:
               469
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               515, 522
               

               Conread position:
               7-710
               

               Cow position:
               chr18:41198005-41198708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               707
               

               Alignm identity:
               478
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 38
               

               Conread position:
               7-710
               

               Cow position:
               chr18:43093660-43092957 (view UCSC Genome Browser custom track)
               

               Alignm length:
               706
               

               Alignm identity:
               488
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               551, 537
               

               Conread position:
               7-710
               

               Cow position:
               chr18:50048961-50048263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               708
               

               Alignm identity:
               474
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 22
               

               Conread position:
               7-710
               

               Cow position:
               chr18:50049129-50048426 (view UCSC Genome Browser custom track)
               

               Alignm length:
               708
               

               Alignm identity:
               471
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 44
               

               Conread position:
               7-710
               

               Cow position:
               chr18:50059529-50058826 (view UCSC Genome Browser custom track)
               

               Alignm length:
               705
               

               Alignm identity:
               451
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               380, 384
               

               Conread position:
               8-709
               

               Cow position:
               chr18:44239936-44240637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               706
               

               Alignm identity:
               465
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 43
               

               Conread position:
               8-710
               

               Cow position:
               chr18:42791311-42792013 (view UCSC Genome Browser custom track)
               

               Alignm length:
               707
               

               Alignm identity:
               484
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 48
               

               Conread position:
               9-520
               

               Cow position:
               chr18:51751987-51751480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               516
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               250, 272
               

               Conread position:
               9-689
               

               Cow position:
               chr18:55523656-55524336 (view UCSC Genome Browser custom track)
               

               Alignm length:
               686
               

               Alignm identity:
               453
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 31
               

               Conread position:
               9-708
               

               Cow position:
               chr18:50083294-50083994 (view UCSC Genome Browser custom track)
               

               Alignm length:
               701
               

               Alignm identity:
               468
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               694, 0
               

               Conread position:
               9-708
               

               Cow position:
               chr18:51789629-51788929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               702
               

               Alignm identity:
               462
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               451, 460
               

               Conread position:
               9-709
               

               Cow position:
               chr18:42960287-42959596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               704
               

               Alignm identity:
               465
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 37
               

               Conread position:
               10-234
               

               Cow position:
               chr18:50849272-50849496 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               10-289
               

               Cow position:
               chr18:51367498-51367219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               187
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               52, 42
               

               Conread position:
               10-354
               

               Cow position:
               chr18:42984791-42984447 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               222
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               285, 274
               

               Conread position:
               10-430
               

               Cow position:
               chr18:50058686-50058275 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               278
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               269, 187
               

               Conread position:
               10-482
               

               Cow position:
               chr18:51812367-51811895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               10-516
               

               Cow position:
               chr18:44184453-44183947 (view UCSC Genome Browser custom track)
               

               Alignm length:
               512
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 35
               

               Conread position:
               10-534
               

               Cow position:
               chr18:42792405-42792929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               525
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               10-535
               

               Cow position:
               chr18:50021883-50021357 (view UCSC Genome Browser custom track)
               

               Alignm length:
               531
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               142, 277
               

               Conread position:
               10-615
               

               Cow position:
               chr18:56493941-56494543 (view UCSC Genome Browser custom track)
               

               Alignm length:
               607
               

               Alignm identity:
               387
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               571, 545
               

               Conread position:
               10-620
               

               Cow position:
               chr18:54966964-54967574 (view UCSC Genome Browser custom track)
               

               Alignm length:
               616
               

               Alignm identity:
               398
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 62
               

               Conread position:
               10-649
               

               Cow position:
               chr18:51812535-51811896 (view UCSC Genome Browser custom track)
               

               Alignm length:
               640
               

               Alignm identity:
               406
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               10-653
               

               Cow position:
               chr18:50848852-50849495 (view UCSC Genome Browser custom track)
               

               Alignm length:
               649
               

               Alignm identity:
               419
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               198, 205
               

               Conread position:
               10-662
               

               Cow position:
               chr18:56493857-56494508 (view UCSC Genome Browser custom track)
               

               Alignm length:
               656
               

               Alignm identity:
               412
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 35
               

               Conread position:
               10-665
               

               Cow position:
               chr18:43093405-43092752 (view UCSC Genome Browser custom track)
               

               Alignm length:
               659
               

               Alignm identity:
               440
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 42
               

               Conread position:
               10-671
               

               Cow position:
               chr18:42675056-42674395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               664
               

               Alignm identity:
               440
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               289, 274
               

               Conread position:
               10-681
               

               Cow position:
               chr18:42792237-42792908 (view UCSC Genome Browser custom track)
               

               Alignm length:
               672
               

               Alignm identity:
               456
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               10-700
               

               Cow position:
               chr18:51789460-51788770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               693
               

               Alignm identity:
               437
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 54
               

               Conread position:
               10-704
               

               Cow position:
               chr18:56128470-56129163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               696
               

               Alignm identity:
               450
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 41
               

               Conread position:
               10-706
               

               Cow position:
               chr18:51368421-51367726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               701
               

               Alignm identity:
               446
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 61
               

               Conread position:
               10-706
               

               Cow position:
               chr18:51969120-51969796 (view UCSC Genome Browser custom track)
               

               Alignm length:
               699
               

               Alignm identity:
               442
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               208, 115
               

               Conread position:
               10-708
               

               Cow position:
               chr18:42792153-42792852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               701
               

               Alignm identity:
               508
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 19
               

               Conread position:
               10-709
               

               Cow position:
               chr18:42744704-42744005 (view UCSC Genome Browser custom track)
               

               Alignm length:
               702
               

               Alignm identity:
               475
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 116
               

               Conread position:
               10-709
               

               Cow position:
               chr18:42790977-42791676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               700
               

               Alignm identity:
               523
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               10-709
               

               Cow position:
               chr18:43022722-43022023 (view UCSC Genome Browser custom track)
               

               Alignm length:
               701
               

               Alignm identity:
               454
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               290, 274
               

               Conread position:
               10-709
               

               Cow position:
               chr18:44184705-44184006 (view UCSC Genome Browser custom track)
               

               Alignm length:
               701
               

               Alignm identity:
               451
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               462, 453
               

               Conread position:
               10-709
               

               Cow position:
               chr18:44184789-44184089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               705
               

               Alignm identity:
               466
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               297, 274
               

               Conread position:
               10-709
               

               Cow position:
               chr18:44253710-44253025 (view UCSC Genome Browser custom track)
               

               Alignm length:
               701
               

               Alignm identity:
               442
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 34
               

               Conread position:
               10-709
               

               Cow position:
               chr18:52427982-52428681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               702
               

               Alignm identity:
               463
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               115, 132
               

               Conread position:
               10-709
               

               Cow position:
               chr18:53559939-53560638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               703
               

               Alignm identity:
               444
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 41
               

               Conread position:
               10-709
               

               Cow position:
               chr18:55017893-55018592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               703
               

               Alignm identity:
               448
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 34
               

               Conread position:
               10-710
               

               Cow position:
               chr18:33064589-33063889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               704
               

               Alignm identity:
               468
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 42
               

               Conread position:
               10-710
               

               Cow position:
               chr18:40306602-40307302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               703
               

               Alignm identity:
               449
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 41
               

               Conread position:
               10-710
               

               Cow position:
               chr18:41197756-41198456 (view UCSC Genome Browser custom track)
               

               Alignm length:
               702
               

               Alignm identity:
               497
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               558, 546
               

               Conread position:
               10-710
               

               Cow position:
               chr18:41197924-41198624 (view UCSC Genome Browser custom track)
               

               Alignm length:
               702
               

               Alignm identity:
               482
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 19
               

               Conread position:
               10-710
               

               Cow position:
               chr18:41949167-41948467 (view UCSC Genome Browser custom track)
               

               Alignm length:
               701
               

               Alignm identity:
               463
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               10-710
               

               Cow position:
               chr18:50848600-50849300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               709
               

               Alignm identity:
               490
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 42
               

               Conread position:
               10-712
               

               Cow position:
               chr18:42675224-42674522 (view UCSC Genome Browser custom track)
               

               Alignm length:
               705
               

               Alignm identity:
               474
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 128
               

               Conread position:
               10-712
               

               Cow position:
               chr18:50099072-50099775 (view UCSC Genome Browser custom track)
               

               Alignm length:
               708
               

               Alignm identity:
               475
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 115
               

               Conread position:
               10-712
               

               Cow position:
               chr18:51812787-51812085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               704
               

               Alignm identity:
               455
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               272, 279
               

               Conread position:
               10-713
               

               Cow position:
               chr18:54979909-54980611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               711
               

               Alignm identity:
               453
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 23
               

               Conread position:
               10-715
               

               Cow position:
               chr18:43093981-43093289 (view UCSC Genome Browser custom track)
               

               Alignm length:
               707
               

               Alignm identity:
               476
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               283, 254
               

               Conread position:
               10-715
               

               Cow position:
               chr18:44184873-44184169 (view UCSC Genome Browser custom track)
               

               Alignm length:
               711
               

               Alignm identity:
               478
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               199, 208
               

               Conread position:
               10-717
               

               Cow position:
               chr18:50083463-50084169 (view UCSC Genome Browser custom track)
               

               Alignm length:
               710
               

               Alignm identity:
               489
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               367, 379
               

               Conread position:
               10-718
               

               Cow position:
               chr18:44239854-44240563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               714
               

               Alignm identity:
               462
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 19
               

               Conread position:
               10-719
               

               Cow position:
               chr18:43175259-43174551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               711
               

               Alignm identity:
               466
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               281, 274
               

               Conread position:
               11-488
               

               Cow position:
               chr18:51367665-51367187 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 115
               

               Conread position:
               11-709
               

               Cow position:
               chr18:40086416-40085727 (view UCSC Genome Browser custom track)
               

               Alignm length:
               706
               

               Alignm identity:
               449
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               259, 200
               

               Conread position:
               11-709
               

               Cow position:
               chr18:43093572-43092874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               703
               

               Alignm identity:
               492
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 18
               

               Conread position:
               11-709
               

               Cow position:
               chr18:43175342-43174644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               702
               

               Alignm identity:
               470
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               281, 292
               

               Conread position:
               11-710
               

               Cow position:
               chr18:41949334-41948635 (view UCSC Genome Browser custom track)
               

               Alignm length:
               704
               

               Alignm identity:
               476
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 33
               

               Conread position:
               11-710
               

               Cow position:
               chr18:50059357-50058658 (view UCSC Genome Browser custom track)
               

               Alignm length:
               701
               

               Alignm identity:
               464
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               455, 449
               

               Conread position:
               12-709
               

               Cow position:
               chr18:41949081-41948384 (view UCSC Genome Browser custom track)
               

               Alignm length:
               700
               

               Alignm identity:
               474
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               367, 388
               

               Conread position:
               12-710
               

               Cow position:
               chr18:1417849-1418547 (view UCSC Genome Browser custom track)
               

               Alignm length:
               702
               

               Alignm identity:
               483
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 63
               

               Conread position:
               13-275
               

               Cow position:
               chr18:51839041-51838779 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               13-414
               

               Cow position:
               chr18:51765310-51764909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               264
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               53, 38
               
13-543UCSC Genome Browser
               Conread position:
               
               

               Cow position:
               chr18:51838770-51838245 (view  custom track)
               

               Alignm length:
               531
               

               Alignm identity:
               310
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               179, 0
               
13-619UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr18:43120139-43119533 (view  custom track)

               
               
               
Alignm length: 609

               
               
               
Alignm identity: 399

               
               
               
Alignm E-value: 0

               
               
               
Alignm gaps (pig, cow): 283, 290
13-677UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr18:51400548-51401212 (view  custom track)

               
               
               
Alignm length: 666

               
               
               
Alignm identity: 422

               
               
               
Alignm E-value: 0

               
               
               
Alignm gaps (pig, cow): 555, 543

               
               
               Conread position:13-689
               
               
               Cow position:chr18:51752151-51751479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:681
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 51

               
               
               Conread position:13-700
               
               
               Cow position:chr18:51812700-51812013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:13-702
               
               
               Cow position:chr18:51789289-51788602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:691
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 30

               
               
               Conread position:13-709
               
               
               Cow position:chr18:44253791-44253108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:697
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):407, 0

               
               
               Conread position:13-709
               
               
               Cow position:chr18:44398423-44397727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:698
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):598, 594

               
               
               Conread position:13-709
               
               
               Cow position:chr18:50271393-50272089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 43

               
               
               Conread position:13-709
               
               
               Cow position:chr18:51765646-51764949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 206

               
               
               Conread position:13-709
               
               
               Cow position:chr18:51812616-51811920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 51

               
               
               Conread position:13-709
               
               
               Cow position:chr18:52447376-52448073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:698
               
               
               Alignm identity:461
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):689, 0

               
               
               Conread position:13-712
               
               
               Cow position:chr18:51789541-51788842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 276

               
               
               Conread position:13-719
               
               
               Cow position:chr18:43175592-43174887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:708
               
               
               Alignm identity:465
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):282, 272

               
               
               Conread position:14-372
               
               
               Cow position:chr18:50271814-50272171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:236
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):205, 191

               
               
               Conread position:14-373
               
               
               Cow position:chr18:50251184-50251543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):263, 231

               
               
               Conread position:14-709
               
               
               Cow position:chr18:50848352-50849047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:473
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):363, 368

               
               
               Conread position:14-709
               
               
               Cow position:chr18:53586982-53586286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:453
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 42

               
               
               Conread position:14-716
               
               
               Cow position:chr18:50099496-50100199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):201, 209

               
               
               Conread position:15-263
               
               
               Cow position:chr18:42827674-42827922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):234, 239

               
               
               Conread position:15-554
               
               
               Cow position:chr18:50848941-50849480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 37

               
               
               Conread position:15-703
               
               
               Cow position:chr18:53509256-53509944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 136

               
               
               Conread position:15-709
               
               
               Cow position:chr18:50099413-50100107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:700
               
               
               Alignm identity:463
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 27

               
               
               Conread position:15-709
               
               
               Cow position:chr18:53525710-53526405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:700
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 136

               
               
               Conread position:15-713
               
               
               Cow position:chr18:55523326-55524024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 35

               
               
               Conread position:22-507
               
               
               Cow position:chr18:50246354-50246839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 118

               
               
               Conread position:22-658
               
               
               Cow position:chr18:42724563-42723927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:640
               
               
               Alignm identity:375
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):44, 25

               
               
               Conread position:22-708
               
               
               Cow position:chr18:50245766-50246453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:691
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 118

               
               
               Conread position:23-705
               
               
               Cow position:chr18:42960601-42959927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 104

               
               
               Conread position:25-519
               
               
               Cow position:chr18:51400728-51401222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 39

               
               
               Conread position:25-703
               
               
               Cow position:chr18:51812940-51812262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:682
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 101

               
               
               Conread position:25-704
               
               
               Cow position:chr18:51765970-51765291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:682
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):514, 542

               
               
               Conread position:25-710
               
               
               Cow position:chr18:42791916-42792601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:687
               
               
               Alignm identity:530
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):350, 357

               
               
               Conread position:25-710
               
               
               Cow position:chr18:50022291-50021600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:694
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):222, 270

               
               
               Conread position:25-710
               
               
               Cow position:chr18:50059595-50058910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:25-710
               
               
               Cow position:chr18:50245853-50246538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:691
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 17

               
               
               Conread position:25-710
               
               
               Cow position:chr18:51752223-51751536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:692
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):352, 372

               
               
               Conread position:29-265
               
               
               Cow position:chr18:43053427-43053191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:30-709
               
               
               Cow position:chr18:51752301-51751623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 11

               
               
               Conread position:34-704
               
               
               Cow position:chr18:51765709-51765039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:673
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):345, 357

               
               
               Conread position:34-709
               
               
               Cow position:chr18:51789772-51789097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 97

               
               
               Conread position:35-340
               
               
               Cow position:chr18:42827610-42827915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:35-351
               
               
               Cow position:chr18:56247363-56247051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):219, 0

               
               
               Conread position:35-465
               
               
               Cow position:chr18:50271751-50272181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):428, 392

               
               
               Conread position:35-710
               
               
               Cow position:chr18:42791422-42792097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:678
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 20

               
               
               Conread position:35-710
               
               
               Cow position:chr18:56316171-56316846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 13

               
               
               Conread position:35-712
               
               
               Cow position:chr18:50848709-50849386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:461
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 68

               
               
               Conread position:35-715
               
               
               Cow position:chr18:51969379-51970047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:681
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):235, 0

               
               
               Conread position:36-679
               
               
               Cow position:chr18:51789350-51788707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:646
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):357, 351

               
               
               Conread position:36-703
               
               
               Cow position:chr18:51400320-51400986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:671
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 5

               
               
               Conread position:36-708
               
               
               Cow position:chr18:33065151-33064478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:682
               
               
               Alignm identity:410
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):27, 16

               
               
               Conread position:42-355
               
               
               Cow position:chr18:42693247-42692934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):73, 10

               
               
               Conread position:42-709
               
               
               Cow position:chr18:44254094-44253431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:670
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):249, 188

               
               
               Conread position:45-702
               
               
               Cow position:chr18:53525653-53526313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:665
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 35

               
               
               Conread position:45-703
               
               
               Cow position:chr18:53509199-53509860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:666
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 35

               
               
               Conread position:49-709
               
               
               Cow position:chr18:41948960-41948301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:662
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):651, 634

               
               
               Conread position:50-710
               
               
               Cow position:chr18:44239810-44240471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:664
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):422, 412

               
               
               Conread position:60-435
               
               
               Cow position:chr18:56247420-56247051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):345, 46

               
               
               Conread position:60-669
               
               
               Cow position:chr18:43022588-43021979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 69

               
               
               Conread position:60-709
               
               
               Cow position:chr18:44154475-44153830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:653
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 493

               
               
               Conread position:61-631
               
               
               Cow position:chr18:51874127-51874690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 32

               
               
               Conread position:61-679
               
               
               Cow position:chr18:44153890-44153286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:389
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):171, 153

               
               
               Conread position:61-719
               
               
               Cow position:chr18:52447256-52447917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:662
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):641, 0

               
               
               Conread position:62-430
               
               
               Cow position:chr18:14453223-14452855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-520
               
               
               Cow position:chr18:52428538-52428996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):388, 401

               
               
               Conread position:62-520
               
               
               Cow position:chr18:52433719-52434177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):388, 401

               
               
               Conread position:62-580
               
               
               Cow position:chr18:51765429-51764911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 254

               
               
               Conread position:62-642
               
               
               Cow position:chr18:42827469-42828053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):227, 222

               
               
               Conread position:62-700
               
               
               Cow position:chr18:42791197-42791835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:640
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):331, 336

               
               
               Conread position:62-703
               
               
               Cow position:chr18:49032813-49032172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:642
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-708
               
               
               Cow position:chr18:33064369-33063722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:652
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):254, 247

               
               
               Conread position:62-708
               
               
               Cow position:chr18:50245722-50246369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:651
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 162

               
               
               Conread position:62-709
               
               
               Cow position:chr18:33064705-33064057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:650
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):422, 415

               
               
               Conread position:62-710
               
               
               Cow position:chr18:42675256-42674608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:649
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-710
               
               
               Cow position:chr18:44398458-44397810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:651
               
               
               Alignm identity:452
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 20

               
               
               Conread position:62-710
               
               
               Cow position:chr18:52428286-52428935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:651
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 80

               
               
               Conread position:62-710
               
               
               Cow position:chr18:52433467-52434116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:651
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 64

               
               
               Conread position:63-717
               
               
               Cow position:chr18:42675339-42674686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:658
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):398, 415

               
               
               Conread position:64-709
               
               
               Cow position:chr18:42960316-42959680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:648
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 66

               
               
               Conread position:65-345
               
               
               Cow position:chr18:44397783-44397503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):60, 68

               
               
               Conread position:65-446
               
               
               Cow position:chr18:54968190-54968570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):40, 22

               
               
               Conread position:65-526
               
               
               Cow position:chr18:51839241-51838780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:65-535
               
               
               Cow position:chr18:52447932-52448403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):312, 320

               
               
               Conread position:65-604
               
               
               Cow position:chr18:52428457-52428996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 68

               
               
               Conread position:65-604
               
               
               Cow position:chr18:52433638-52434177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):476, 494

               
               
               Conread position:65-619
               
               
               Cow position:chr18:22634624-22635178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:562
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 160

               
               
               Conread position:65-620
               
               
               Cow position:chr18:56434365-56434920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:562
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 22

               
               
               Conread position:65-671
               
               
               Cow position:chr18:42837700-42837094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):587, 582

               
               
               Conread position:65-679
               
               
               Cow position:chr18:51874047-51874654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):411, 112

               
               
               Conread position:65-695
               
               
               Cow position:chr18:33093038-33092407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):566, 573

               
               
               Conread position:65-704
               
               
               Cow position:chr18:43167860-43168499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:641
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):312, 321

               
               
               Conread position:65-708
               
               
               Cow position:chr18:51368450-51367807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:645
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):235, 219

               
               
               Conread position:65-709
               
               
               Cow position:chr18:33064618-33063974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:649
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 219

               
               
               Conread position:65-709
               
               
               Cow position:chr18:40086530-40085896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:648
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):404, 324

               
               
               Conread position:65-709
               
               
               Cow position:chr18:40324648-40324004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:646
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):403, 413

               
               
               Conread position:65-709
               
               
               Cow position:chr18:42985576-42984932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:649
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):239, 219

               
               
               Conread position:65-709
               
               
               Cow position:chr18:43120171-43119527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:645
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:65-709
               
               
               Cow position:chr18:43120666-43120031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:647
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 82

               
               
               Conread position:65-709
               
               
               Cow position:chr18:44184902-44184258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:650
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 69

               
               
               Conread position:65-709
               
               
               Cow position:chr18:44239741-44240385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:646
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 64

               
               
               Conread position:65-709
               
               
               Cow position:chr18:52428205-52428849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:646
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 156

               
               
               Conread position:65-709
               
               
               Cow position:chr18:52433386-52434030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:646
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 151

               
               
               Conread position:65-709
               
               
               Cow position:chr18:52447680-52448326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:649
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):573, 564

               
               
               Conread position:65-709
               
               
               Cow position:chr18:54966935-54967579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:647
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):248, 237

               
               
               Conread position:65-709
               
               
               Cow position:chr18:54992972-54993616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:649
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 139

               
               
               Conread position:65-710
               
               
               Cow position:chr18:42791704-42792349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:647
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):166, 157

               
               
               Conread position:65-710
               
               
               Cow position:chr18:50083602-50084247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:647
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):312, 324

               
               
               Conread position:65-710
               
               
               Cow position:chr18:51368534-51367889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:648
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 17

               
               
               Conread position:65-712
               
               
               Cow position:chr18:43093434-43092788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:648
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):603, 0

               
               
               Conread position:65-713
               
               
               Cow position:chr18:51368702-51368054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:652
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 67

               
               
               Conread position:65-713
               
               
               Cow position:chr18:54993308-54993954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:655
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 139

               
               
               Conread position:65-716
               
               
               Cow position:chr18:56316369-56317020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:654
               
               
               Alignm identity:383
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):326, 302

               
               
               Conread position:66-500
               
               
               Cow position:chr18:49032473-49032039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:272
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:66-709
               
               
               Cow position:chr18:49033313-49032670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:646
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):309, 325

               
               
               Conread position:66-709
               
               
               Cow position:chr18:52427618-52428261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:646
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):492, 479

               
               
               Conread position:66-709
               
               
               Cow position:chr18:52432967-52433610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:645
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):552, 569

               
               
               Conread position:66-710
               
               
               Cow position:chr18:56316286-56316930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:648
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 135

               
               
               Conread position:67-709
               
               
               Cow position:chr18:54979798-54980440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:648
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 20

               
               
               Conread position:67-710
               
               
               Cow position:chr18:50022078-50021432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:652
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 66

               
               
               Conread position:69-541
               
               
               Cow position:chr18:49022802-49023274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 118

               
               
               Conread position:69-673
               
               
               Cow position:chr18:53586591-53585987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 79

               
               
               Conread position:69-678
               
               
               Cow position:chr18:44184562-44183953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 61

               
               
               Conread position:69-709
               
               
               Cow position:chr18:52427537-52428177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:642
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):549, 567

               
               
               Conread position:69-710
               
               
               Cow position:chr18:43167612-43168253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:643
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 155

               
               
               Conread position:69-713
               
               
               Cow position:chr18:55523464-55524108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:648
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 18

               
               
               Conread position:69-715
               
               
               Cow position:chr18:52432886-52433532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:647
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:70-709
               
               
               Cow position:chr18:40306410-40307049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:641
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):246, 233

               
               
               Conread position:71-709
               
               
               Cow position:chr18:40306159-40306797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:642
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 13

               
               
               Conread position:72-531
               
               
               Cow position:chr18:51970331-51970782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:281
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):32, 37

               
               
               Conread position:72-591
               
               
               Cow position:chr18:49022721-49023242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 118

               
               
               Conread position:72-688
               
               
               Cow position:chr18:42724849-42724233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:364
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):64, 54

               
               
               Conread position:72-709
               
               
               Cow position:chr18:44253900-44253276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:641
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):229, 212

               
               
               Conread position:72-709
               
               
               Cow position:chr18:51969257-51969874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:638
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:72-712
               
               
               Cow position:chr18:42791627-42792267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:641
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:73-438
               
               
               Cow position:chr18:52011863-52011495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):197, 201

               
               
               Conread position:73-532
               
               
               Cow position:chr18:44253324-44252873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 52

               
               
               Conread position:73-548
               
               
               Cow position:chr18:51874216-51874691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 123

               
               
               Conread position:73-590
               
               
               Cow position:chr18:43048736-43048221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 211

               
               
               Conread position:73-672
               
               
               Cow position:chr18:40306749-40307348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):279, 263

               
               
               Conread position:73-679
               
               
               Cow position:chr18:40324556-40323950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 218

               
               
               Conread position:73-679
               
               
               Cow position:chr18:50271537-50272143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):304, 318

               
               
               Conread position:73-703
               
               
               Cow position:chr18:54992896-54993526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:636
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 142

               
               
               Conread position:73-704
               
               
               Cow position:chr18:44154291-44153667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):307, 0

               
               
               Conread position:73-709
               
               
               Cow position:chr18:42675497-42674861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:638
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):327, 299

               
               
               Conread position:73-709
               
               
               Cow position:chr18:52427709-52428345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:640
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 211

               
               
               Conread position:73-709
               
               
               Cow position:chr18:52427877-52428513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:639
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 218

               
               
               Conread position:73-709
               
               
               Cow position:chr18:52433058-52433694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:640
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 211

               
               
               Conread position:73-709
               
               
               Cow position:chr18:52433226-52433862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:638
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):303, 317

               
               
               Conread position:73-709
               
               
               Cow position:chr18:52447100-52447736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:640
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):234, 211

               
               
               Conread position:73-710
               
               
               Cow position:chr18:14454028-14453391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:640
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 51

               
               
               Conread position:73-710
               
               
               Cow position:chr18:40324808-40324171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:644
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 199

               
               
               Conread position:73-710
               
               
               Cow position:chr18:43094002-43093377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:638
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:73-710
               
               
               Cow position:chr18:52446932-52447569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:640
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):396, 386

               
               
               Conread position:73-710
               
               
               Cow position:chr18:55067120-55066481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:642
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 320

               
               
               Conread position:73-712
               
               
               Cow position:chr18:42790956-42791595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:640
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:73-714
               
               
               Cow position:chr18:51765838-51765198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:650
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 60

               
               
               Conread position:73-717
               
               
               Cow position:chr18:56247737-56247104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:646
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):222, 211

               
               
               Conread position:74-709
               
               
               Cow position:chr18:50031073-50030436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:642
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):231, 142

               
               
               Conread position:75-709
               
               
               Cow position:chr18:33064944-33064310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:636
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):522, 529

               
               
               Conread position:75-710
               
               
               Cow position:chr18:50281667-50282303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:640
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 21

               
               
               Conread position:76-348
               
               
               Cow position:chr18:43053464-43053192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:76-457
               
               
               Cow position:chr18:50251162-50251543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):289, 253

               
               
               Conread position:76-591
               
               
               Cow position:chr18:43168039-43168554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):299, 306

               
               
               Conread position:76-593
               
               
               Cow position:chr18:14453857-14453340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:305
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):224, 211

               
               
               Conread position:76-611
               
               
               Cow position:chr18:51839314-51838779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:76-621
               
               
               Cow position:chr18:51367768-51367223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:547
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 144

               
               
               Conread position:76-665
               
               
               Cow position:chr18:50058956-50058369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):299, 315

               
               
               Conread position:76-678
               
               
               Cow position:chr18:41198158-41198760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):301, 315

               
               
               Conread position:76-679
               
               
               Cow position:chr18:1417997-1418600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 172

               
               
               Conread position:76-679
               
               
               Cow position:chr18:50059124-50058521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 141

               
               
               Conread position:76-682
               
               
               Cow position:chr18:52428384-52428990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 49

               
               
               Conread position:76-682
               
               
               Cow position:chr18:52433565-52434171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):542, 554

               
               
               Conread position:76-682
               
               
               Cow position:chr18:52447775-52448382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):301, 309

               
               
               Conread position:76-689
               
               
               Cow position:chr18:51789814-51789201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):383, 388

               
               
               Conread position:76-703
               
               
               Cow position:chr18:51766003-51765376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 211

               
               
               Conread position:76-703
               
               
               Cow position:chr18:51789646-51789019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):303, 315

               
               
               Conread position:76-708
               
               
               Cow position:chr18:50099642-50100275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:637
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 155

               
               
               Conread position:76-708
               
               
               Cow position:chr18:51812805-51812172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:637
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):384, 393

               
               
               Conread position:76-709
               
               
               Cow position:chr18:51765751-51765117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:639
               
               
               Alignm identity:401
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):310, 300

               
               
               Conread position:76-709
               
               
               Cow position:chr18:51812973-51812339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:639
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 75

               
               
               Conread position:76-709
               
               
               Cow position:chr18:52427964-52428597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:636
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 145

               
               
               Conread position:76-709
               
               
               Cow position:chr18:52428132-52428765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:636
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 49

               
               
               Conread position:76-709
               
               
               Cow position:chr18:52433313-52433946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:636
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 49

               
               
               Conread position:76-710
               
               
               Cow position:chr18:43093675-43093041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:636
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):460, 468

               
               
               Conread position:76-710
               
               
               Cow position:chr18:50048976-50048342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:638
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 64

               
               
               Conread position:76-710
               
               
               Cow position:chr18:51400443-51401077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:638
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 17

               
               
               Conread position:76-710
               
               
               Cow position:chr18:51839482-51838848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:76-710
               
               
               Cow position:chr18:52447523-52448157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:77-719
               
               
               Cow position:chr18:33093109-33092469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:645
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 9

               
               
               Conread position:78-519
               
               
               Cow position:chr18:54993655-54994096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:294
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):27, 55

               
               
               Conread position:78-544
               
               
               Cow position:chr18:54993571-54994036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:308
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):27, 60

               
               
               Conread position:78-639
               
               
               Cow position:chr18:50271626-50272184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 43

               
               
               Conread position:78-673
               
               
               Cow position:chr18:54967951-54968546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 80

               
               
               Conread position:78-698
               
               
               Cow position:chr18:51400529-51401149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:78-703
               
               
               Cow position:chr18:50245990-50246615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 143

               
               
               Conread position:78-709
               
               
               Cow position:chr18:42694137-42693503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:637
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 386

               
               
               Conread position:78-709
               
               
               Cow position:chr18:49033049-49032418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:636
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 44

               
               
               Conread position:78-709
               
               
               Cow position:chr18:51813054-51812424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 6

               
               
               Conread position:78-709
               
               
               Cow position:chr18:51969021-51969631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:638
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 9

               
               
               Conread position:78-709
               
               
               Cow position:chr18:53610386-53609755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:78-710
               
               
               Cow position:chr18:49033217-49032585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:634
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):490, 484

               
               
               Conread position:78-710
               
               
               Cow position:chr18:50022493-50021855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:644
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 70

               
               
               Conread position:78-710
               
               
               Cow position:chr18:52012278-52011646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):312, 305

               
               
               Conread position:78-710
               
               
               Cow position:chr18:56329518-56328886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:634
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):299, 308

               
               
               Conread position:78-710
               
               
               Cow position:chr18:56329938-56329306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:636
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 130

               
               
               Conread position:78-710
               
               
               Cow position:chr18:56330106-56329474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:634
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):301, 313

               
               
               Conread position:78-716
               
               
               Cow position:chr18:53498132-53498775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:650
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 156

               
               
               Conread position:78-719
               
               
               Cow position:chr18:50099224-50099866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:648
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 145

               
               
               Conread position:79-709
               
               
               Cow position:chr18:42693714-42693084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):263, 269

               
               
               Conread position:79-710
               
               
               Cow position:chr18:56330189-56329558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:80-710
               
               
               Cow position:chr18:50049228-50048594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:640
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 19

               
               
               Conread position:80-712
               
               
               Cow position:chr18:53636130-53635497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 476

               
               
               Conread position:81-708
               
               
               Cow position:chr18:49033383-49032755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 45

               
               
               Conread position:81-710
               
               
               Cow position:chr18:51368603-51367973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:634
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 52

               
               
               Conread position:81-710
               
               
               Cow position:chr18:51766082-51765452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:636
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):201, 215

               
               
               Conread position:81-713
               
               
               Cow position:chr18:49022396-49023026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:639
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 44

               
               
               Conread position:82-632
               
               
               Cow position:chr18:50083703-50084253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:554
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 42

               
               
               Conread position:82-668
               
               
               Cow position:chr18:55008644-55009230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 58

               
               
               Conread position:82-677
               
               
               Cow position:chr18:50030981-50030388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 27

               
               
               Conread position:82-678
               
               
               Cow position:chr18:51838785-51838199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:367
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):149, 138

               
               
               Conread position:82-678
               
               
               Cow position:chr18:51839056-51838443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:353
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):171, 465

               
               
               Conread position:82-703
               
               
               Cow position:chr18:50083451-50084072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):309, 305

               
               
               Conread position:82-709
               
               
               Cow position:chr18:40306254-40306881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 140

               
               
               Conread position:82-709
               
               
               Cow position:chr18:51969342-51969958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):316, 272

               
               
               Conread position:82-709
               
               
               Cow position:chr18:56248158-56247521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:640
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):295, 252

               
               
               Conread position:82-710
               
               
               Cow position:chr18:40324715-40324087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 202

               
               
               Conread position:82-710
               
               
               Cow position:chr18:41197576-41198204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 204

               
               
               Conread position:82-710
               
               
               Cow position:chr18:42724587-42723959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:370
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):186, 181

               
               
               Conread position:82-710
               
               
               Cow position:chr18:43094158-43093545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 43

               
               
               Conread position:82-710
               
               
               Cow position:chr18:53635791-53635163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:82-710
               
               
               Cow position:chr18:56316050-56316678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:82-715
               
               
               Cow position:chr18:53610466-53609833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):293, 298

               
               
               Conread position:83-594
               
               
               Cow position:chr18:42827406-42827918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 45

               
               
               Conread position:83-621
               
               
               Cow position:chr18:50251004-50251539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 122

               
               
               Conread position:83-703
               
               
               Cow position:chr18:40324882-40324262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 50

               
               
               Conread position:83-709
               
               
               Cow position:chr18:42744715-42744089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:83-709
               
               
               Cow position:chr18:42837934-42837308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 201

               
               
               Conread position:83-709
               
               
               Cow position:chr18:50059621-50058994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):619, 0

               
               
               Conread position:83-709
               
               
               Cow position:chr18:50098977-50099604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):378, 383

               
               
               Conread position:84-412
               
               
               Cow position:chr18:22634893-22635223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:212
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):21, 141

               
               
               Conread position:84-517
               
               
               Cow position:chr18:14453285-14452852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 131

               
               
               Conread position:84-523
               
               
               Cow position:chr18:55523897-55524338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:279
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):16, 150

               
               
               Conread position:84-524
               
               
               Cow position:chr18:53586410-53585968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 309

               
               
               Conread position:84-614
               
               
               Cow position:chr18:54968039-54968570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 122

               
               
               Conread position:84-621
               
               
               Cow position:chr18:52012104-52011567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:541
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 41

               
               
               Conread position:84-688
               
               
               Cow position:chr18:42693961-42693357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 11

               
               
               Conread position:84-703
               
               
               Cow position:chr18:55067025-55066404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:401
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 547

               
               
               Conread position:84-703
               
               
               Cow position:chr18:56493674-56494298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 67

               
               
               Conread position:84-703
               
               
               Cow position:chr18:56493845-56494466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:401
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 90

               
               
               Conread position:84-705
               
               
               Cow position:chr18:50250922-50251539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 36

               
               
               Conread position:84-709
               
               
               Cow position:chr18:40086684-40086056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 85

               
               
               Conread position:84-709
               
               
               Cow position:chr18:41949345-41948720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:84-709
               
               
               Cow position:chr18:43023068-43022443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):557, 549

               
               
               Conread position:84-709
               
               
               Cow position:chr18:49022483-49023106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):293, 113

               
               
               Conread position:84-709
               
               
               Cow position:chr18:51367843-51367218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 34

               
               
               Conread position:84-709
               
               
               Cow position:chr18:52427804-52428429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 41

               
               
               Conread position:84-709
               
               
               Cow position:chr18:52433153-52433778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 41

               
               
               Conread position:84-709
               
               
               Cow position:chr18:54967120-54967744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 202

               
               
               Conread position:84-709
               
               
               Cow position:chr18:54979645-54980272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 202

               
               
               Conread position:84-710
               
               
               Cow position:chr18:50246164-50246790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 137

               
               
               Conread position:84-710
               
               
               Cow position:chr18:52012356-52011730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 40

               
               
               Conread position:84-710
               
               
               Cow position:chr18:53560095-53560723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 466

               
               
               Conread position:84-710
               
               
               Cow position:chr18:53635705-53635079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 158

               
               
               Conread position:84-710
               
               
               Cow position:chr18:56128376-56129002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:84-710
               
               
               Cow position:chr18:56329764-56329138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:84-710
               
               
               Cow position:chr18:56330016-56329390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:84-712
               
               
               Cow position:chr18:56128292-56128920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:401
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):481, 471

               
               
               Conread position:84-714
               
               
               Cow position:chr18:33064263-33063633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 64

               
               
               Conread position:84-717
               
               
               Cow position:chr18:55008560-55009194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:640
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 149

               
               
               Conread position:85-524
               
               
               Cow position:chr18:1418174-1418613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):292, 297

               
               
               Conread position:85-677
               
               
               Cow position:chr18:49021571-49022164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:360
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):40, 44

               
               
               Conread position:85-703
               
               
               Cow position:chr18:52447364-52447982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):291, 297

               
               
               Conread position:85-704
               
               
               Cow position:chr18:43120403-43119784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 29

               
               
               Conread position:85-709
               
               
               Cow position:chr18:42694044-42693419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):198, 203

               
               
               Conread position:85-709
               
               
               Cow position:chr18:43120319-43119695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 49

               
               
               Conread position:85-709
               
               
               Cow position:chr18:43175352-43174728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 199

               
               
               Conread position:85-710
               
               
               Cow position:chr18:42675566-42674944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 28

               
               
               Conread position:85-710
               
               
               Cow position:chr18:49022568-49023192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 31

               
               
               Conread position:85-719
               
               
               Cow position:chr18:52447028-52447665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:639
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 46

               
               
               Conread position:86-631
               
               
               Cow position:chr18:51839388-51838843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:547
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):476, 482

               
               
               Conread position:86-673
               
               
               Cow position:chr18:55497617-55497030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:590
               
               
               Alignm identity:331
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):306, 301

               
               
               Conread position:86-681
               
               
               Cow position:chr18:43167965-43168558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 198

               
               
               Conread position:86-710
               
               
               Cow position:chr18:49022233-49022855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:363
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):43, 38

               
               
               Conread position:87-511
               
               
               Cow position:chr18:43174846-43174431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 184

               
               
               Conread position:87-706
               
               
               Cow position:chr18:44154025-44153425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):290, 45

               
               
               Conread position:87-708
               
               
               Cow position:chr18:50083288-50083910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 117

               
               
               Conread position:88-709
               
               
               Cow position:chr18:56247808-56247193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 305

               
               
               Conread position:89-386
               
               
               Cow position:chr18:51873708-51874005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:189
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:89-709
               
               
               Cow position:chr18:42675397-42674777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 44

               
               
               Conread position:90-709
               
               
               Cow position:chr18:56433896-56434505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):438, 125

               
               
               Conread position:90-710
               
               
               Cow position:chr18:41197500-41198120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):287, 292

               
               
               Conread position:90-712
               
               
               Cow position:chr18:53610542-53609920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 48

               
               
               Conread position:90-720
               
               
               Cow position:chr18:51789885-51789251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:637
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 128

               
               
               Conread position:94-708
               
               
               Cow position:chr18:42693869-42693251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:95-704
               
               
               Cow position:chr18:53586985-53586376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 53

               
               
               Conread position:99-703
               
               
               Cow position:chr18:56433650-56434247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:375
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):26, 31

               
               
               Conread position:99-706
               
               
               Cow position:chr18:53586645-53586038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 73

               
               
               Conread position:100-709
               
               
               Cow position:chr18:53498328-53498938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 45

               
               
               Conread position:103-598
               
               
               Cow position:chr18:53571833-53572315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:312
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):239, 166

               
               
               Conread position:103-703
               
               
               Cow position:chr18:53559696-53560296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):289, 274

               
               
               Conread position:103-710
               
               
               Cow position:chr18:50083220-50083827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 59

               
               
               Conread position:105-709
               
               
               Cow position:chr18:55017820-55018424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 57

               
               
               Conread position:106-677
               
               
               Cow position:chr18:51752310-51751739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 192

               
               
               Conread position:106-688
               
               
               Cow position:chr18:42693771-42693190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):539, 0

               
               
               Conread position:106-701
               
               
               Cow position:chr18:42694191-42693596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 19

               
               
               Conread position:106-709
               
               
               Cow position:chr18:51839536-51838932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 111

               
               
               Conread position:106-709
               
               
               Cow position:chr18:53587058-53586455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:401
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 126

               
               
               Conread position:108-679
               
               
               Cow position:chr18:54966894-54967465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 210

               
               
               Conread position:108-699
               
               
               Cow position:chr18:54979419-54980010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):284, 273

               
               
               Conread position:108-703
               
               
               Cow position:chr18:53559953-53560548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 107

               
               
               Conread position:108-706
               
               
               Cow position:chr18:44253944-44253351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 46

               
               
               Conread position:108-706
               
               
               Cow position:chr18:52012164-52011566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 197

               
               
               Conread position:108-709
               
               
               Cow position:chr18:53559785-53560387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):592, 0

               
               
               Conread position:108-710
               
               
               Cow position:chr18:50031123-50030519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 25

               
               
               Conread position:108-710
               
               
               Cow position:chr18:54992679-54993281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):371, 376

               
               
               Conread position:108-720
               
               
               Cow position:chr18:53635597-53634983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):598, 564

               
               
               Conread position:109-710
               
               
               Cow position:chr18:50295216-50295817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):268, 282

               
               
               Conread position:114-710
               
               
               Cow position:chr18:50059674-50059078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:120-709
               
               
               Cow position:chr18:54979515-54980104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 176

               
               
               Conread position:131-709
               
               
               Cow position:chr18:50281640-50282219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):246, 254

               
               
               Conread position:132-710
               
               
               Cow position:chr18:51874030-51874601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 81

               
               
               Conread position:134-709
               
               
               Cow position:chr18:40086716-40086140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 34

               
               
               Conread position:136-517
               
               
               Cow position:chr18:53571950-53572318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:241
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):83, 50

               
               
               Conread position:137-709
               
               
               Cow position:chr18:56434102-56434673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 10

               
               
               Conread position:138-520
               
               
               Cow position:chr18:44153656-44153277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:231
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:138-709
               
               
               Cow position:chr18:42837963-42837392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:138-709
               
               
               Cow position:chr18:43167513-43168084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 82

               
               
               Conread position:138-709
               
               
               Cow position:chr18:52446913-52447484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):399, 410

               
               
               Conread position:138-709
               
               
               Cow position:chr18:53587110-53586539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 13

               
               
               Conread position:138-710
               
               
               Cow position:chr18:50271434-50272006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 166

               
               
               Conread position:139-709
               
               
               Cow position:chr18:42744743-42744173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):512, 508

               
               
               Conread position:139-710
               
               
               Cow position:chr18:50098949-50099520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):238, 251

               
               
               Conread position:140-710
               
               
               Cow position:chr18:43167437-43168001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:342
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:140-710
               
               
               Cow position:chr18:44398464-44397894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):416, 424

               
               
               Conread position:141-709
               
               
               Cow position:chr18:40324989-40324424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 36

               
               
               Conread position:142-703
               
               
               Cow position:chr18:55017773-55018334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 149

               
               
               Conread position:142-709
               
               
               Cow position:chr18:43167601-43168168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 107

               
               
               Conread position:142-709
               
               
               Cow position:chr18:43175706-43175148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):423, 117

               
               
               Conread position:143-682
               
               
               Cow position:chr18:14454042-14453503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):431, 405

               
               
               Conread position:143-709
               
               
               Cow position:chr18:52432876-52433442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):475, 490

               
               
               Conread position:143-715
               
               
               Cow position:chr18:52427527-52428099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-709
               
               
               Cow position:chr18:50848146-50848711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 158

               
               
               Conread position:145-703
               
               
               Cow position:chr18:44253336-44252789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 149

               
               
               Conread position:145-714
               
               
               Cow position:chr18:43023091-43022521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):562, 0

               
               
               Conread position:146-684
               
               
               Cow position:chr18:42827385-42827923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:146-709
               
               
               Cow position:chr18:41949367-41948803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):559, 0

               
               
               Conread position:146-710
               
               
               Cow position:chr18:1417815-1418379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 138

               
               
               Conread position:146-710
               
               
               Cow position:chr18:42790945-42791509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:401
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 138

               
               
               Conread position:146-717
               
               
               Cow position:chr18:44184905-44184335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 72

               
               
               Conread position:147-682
               
               
               Cow position:chr18:49021552-49022084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:538
               
               
               Alignm identity:309
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):123, 19

               
               
               Conread position:147-703
               
               
               Cow position:chr18:53498035-53498594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 71

               
               
               Conread position:147-703
               
               
               Cow position:chr18:55008459-55009013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:559
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 82

               
               
               Conread position:147-709
               
               
               Cow position:chr18:49022712-49023274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 127

               
               
               Conread position:147-709
               
               
               Cow position:chr18:50059725-50059163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):415, 419

               
               
               Conread position:147-710
               
               
               Cow position:chr18:40074921-40075484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 192

               
               
               Conread position:147-710
               
               
               Cow position:chr18:52012459-52011898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 12

               
               
               Conread position:147-720
               
               
               Cow position:chr18:56433450-56434020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:344
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):166, 174

               
               
               Conread position:148-457
               
               
               Cow position:chr18:50251775-50252082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:148-708
               
               
               Cow position:chr18:22634623-22635183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 136

               
               
               Conread position:148-709
               
               
               Cow position:chr18:42985577-42985016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:562
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:149-703
               
               
               Cow position:chr18:42960315-42959761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:559
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 135

               
               
               Conread position:151-710
               
               
               Cow position:chr18:50848072-50848628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:561
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 66

               
               
               Conread position:152-676
               
               
               Cow position:chr18:43048741-43048221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:528
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):385, 399

               
               
               Conread position:152-704
               
               
               Cow position:chr18:50022587-50022029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:561
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 57

               
               
               Conread position:156-706
               
               
               Cow position:chr18:56248245-56247692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:564
               
               
               Alignm identity:357
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):135, 21

               
               
               Conread position:157-709
               
               
               Cow position:chr18:53509230-53509782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:556
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 162

               
               
               Conread position:157-709
               
               
               Cow position:chr18:53525684-53526236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:558
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 134

               
               
               Conread position:157-710
               
               
               Cow position:chr18:40306161-40306714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:557
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 85

               
               
               Conread position:158-677
               
               
               Cow position:chr18:14453295-14452775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 65

               
               
               Conread position:158-704
               
               
               Cow position:chr18:53497965-53498512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:556
               
               
               Alignm identity:345
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):230, 49

               
               
               Conread position:159-703
               
               
               Cow position:chr18:51752340-51751797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:547
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 12

               
               
               Conread position:162-712
               
               
               Cow position:chr18:33065109-33064559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:556
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 29

               
               
               Conread position:163-712
               
               
               Cow position:chr18:56316047-56316596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:551
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):445, 449

               
               
               Conread position:169-710
               
               
               Cow position:chr18:49033378-49032837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 115

               
               
               Conread position:169-715
               
               
               Cow position:chr18:51838782-51838242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:551
               
               
               Alignm identity:336
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):119, 113

               
               
               Conread position:171-710
               
               
               Cow position:chr18:49021492-49022028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:320
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):170, 80

               
               
               Conread position:176-712
               
               
               Cow position:chr18:55497695-55497159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:317
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):176, 171

               
               
               Conread position:177-710
               
               
               Cow position:chr18:51839549-51839016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 107

               
               
               Conread position:177-710
               
               
               Cow position:chr18:56493685-56494221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:541
               
               
               Alignm identity:329
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):41, 65

               
               
               Conread position:178-703
               
               
               Cow position:chr18:50295201-50295726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:179-709
               
               
               Cow position:chr18:50098905-50099436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):380, 365

               
               
               Conread position:179-710
               
               
               Cow position:chr18:54966881-54967412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 39

               
               
               Conread position:180-709
               
               
               Cow position:chr18:43175593-43175064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 116

               
               
               Conread position:183-703
               
               
               Cow position:chr18:53559692-53560212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 34

               
               
               Conread position:185-538
               
               
               Cow position:chr18:53598288-53597940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):187, 30

               
               
               Conread position:191-709
               
               
               Cow position:chr18:51400306-51400824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:192-703
               
               
               Cow position:chr18:53587140-53586629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):277, 271

               
               
               Conread position:192-710
               
               
               Cow position:chr18:54979419-54979937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 89

               
               
               Conread position:195-432
               
               
               Cow position:chr18:43053428-43053192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:204-709
               
               
               Cow position:chr18:42837980-42837476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:204-710
               
               
               Cow position:chr18:42744758-42744256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:208-683
               
               
               Cow position:chr18:56248279-56247815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:310
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):33, 55

               
               
               Conread position:210-707
               
               
               Cow position:chr18:54979355-54979850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:313
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):22, 7

               
               
               Conread position:216-709
               
               
               Cow position:chr18:44184919-44184426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 173

               
               
               Conread position:216-715
               
               
               Cow position:chr18:43023104-43022605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 68

               
               
               Conread position:217-709
               
               
               Cow position:chr18:43175872-43175400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:308
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):38, 13

               
               
               Conread position:221-710
               
               
               Cow position:chr18:42985588-42985099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 89

               
               
               Conread position:223-709
               
               
               Cow position:chr18:40086962-40086474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:311
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):80, 68

               
               
               Conread position:226-708
               
               
               Cow position:chr18:50245718-50246201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 58

               
               
               Conread position:227-678
               
               
               Cow position:chr18:51970318-51970761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:283
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):140, 57

               
               
               Conread position:227-709
               
               
               Cow position:chr18:14454042-14453560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):364, 376

               
               
               Conread position:227-709
               
               
               Cow position:chr18:52446918-52447400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 57

               
               
               Conread position:227-710
               
               
               Cow position:chr18:42790858-42791341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):338, 316

               
               
               Conread position:230-712
               
               
               Cow position:chr18:42827385-42827867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:234-710
               
               
               Cow position:chr18:40324982-40324507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 65

               
               
               Conread position:236-598
               
               
               Cow position:chr18:56264976-56264620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):62, 34

               
               
               Conread position:236-709
               
               
               Cow position:chr18:22634545-22635016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:300
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):34, 73

               
               
               Conread position:236-709
               
               
               Cow position:chr18:55008464-55008935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:236-710
               
               
               Cow position:chr18:50022587-50022110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 55

               
               
               Conread position:237-554
               
               
               Cow position:chr18:51873689-51874005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:237-709
               
               
               Cow position:chr18:43120335-43119863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:240-712
               
               
               Cow position:chr18:53636137-53635665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 146

               
               
               Conread position:240-712
               
               
               Cow position:chr18:56128028-56128500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:302
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):138, 159

               
               
               Conread position:241-709
               
               
               Cow position:chr18:53509230-53509698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 150

               
               
               Conread position:242-678
               
               
               Cow position:chr18:14453295-14452859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 61

               
               
               Conread position:243-710
               
               
               Cow position:chr18:51813057-51812591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:295
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):286, 9

               
               
               Conread position:245-709
               
               
               Cow position:chr18:42960546-42960091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:294
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):298, 54

               
               
               Conread position:246-713
               
               
               Cow position:chr18:50250839-50251296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 60

               
               
               Conread position:260-707
               
               
               Cow position:chr18:54966878-54967325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:284
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):305, 289

               
               
               Conread position:260-709
               
               
               Cow position:chr18:55523319-55523768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):262, 266

               
               
               Conread position:261-709
               
               
               Cow position:chr18:43120395-43119946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 24

               
               
               Conread position:262-706
               
               
               Cow position:chr18:50295201-50295645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 198

               
               
               Conread position:266-703
               
               
               Cow position:chr18:53571828-53572252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:279
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):41, 30

               
               
               Conread position:266-710
               
               
               Cow position:chr18:53559691-53560135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 30

               
               
               Conread position:273-550
               
               
               Cow position:chr18:55075112-55075391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):169, 0

               
               
               Conread position:295-710
               
               
               Cow position:chr18:56330225-56329810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:256
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):59, 63

               
               
               Conread position:297-713
               
               
               Cow position:chr18:52427512-52427929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:262
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):11, 86

               
               
               Conread position:297-713
               
               
               Cow position:chr18:52432861-52433278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:262
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):11, 86

               
               
               Conread position:306-709
               
               
               Cow position:chr18:41949375-41948972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:311-709
               
               
               Cow position:chr18:14454042-14453644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:314-709
               
               
               Cow position:chr18:22634539-22634932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:262
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):35, 84

               
               
               Conread position:314-710
               
               
               Cow position:chr18:50049246-50048846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 330

               
               
               Conread position:315-715
               
               
               Cow position:chr18:40074921-40075321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:252
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:316-632
               
               
               Cow position:chr18:50251775-50252089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):62, 84

               
               
               Conread position:317-710
               
               
               Cow position:chr18:50295173-50295565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 27

               
               
               Conread position:319-716
               
               
               Cow position:chr18:51368784-51368387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):57, 42

               
               
               Conread position:320-709
               
               
               Cow position:chr18:43048741-43048352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 233

               
               
               Conread position:325-703
               
               
               Cow position:chr18:14453296-14452918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 139

               
               
               Conread position:325-703
               
               
               Cow position:chr18:53497964-53498345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:252
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):140, 51

               
               
               Conread position:328-598
               
               
               Cow position:chr18:43053464-43053194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:350-716
               
               
               Cow position:chr18:50098908-50099275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):284, 279

               
               
               Conread position:351-714
               
               
               Cow position:chr18:55523326-55523689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):27, 39

               
               
               Conread position:357-609
               
               
               Cow position:chr18:55075112-55075363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):30, 34

               
               
               Conread position:366-710
               
               
               Cow position:chr18:44398489-44398146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:230
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):70, 6

               
               
               Conread position:381-710
               
               
               Cow position:chr18:50271425-50271754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:225
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):251, 247

               
               
               Conread position:383-699
               
               
               Cow position:chr18:42724622-42724306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:384-709
               
               
               Cow position:chr18:44154487-44154159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):106, 174

               
               
               Conread position:385-712
               
               
               Cow position:chr18:41949380-41949052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:220
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):321, 0

               
               
               Conread position:389-710
               
               
               Cow position:chr18:50281646-50281967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:217
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):17, 33

               
               
               Conread position:396-709
               
               
               Cow position:chr18:55017775-55018088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):163, 149

               
               
               Conread position:397-709
               
               
               Cow position:chr18:44239737-44240049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):75, 62

               
               
               Conread position:398-717
               
               
               Cow position:chr18:50059726-50059408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):220, 202

               
               
               Conread position:405-688
               
               
               Cow position:chr18:51873689-51873973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):133, 12

               
               
               Conread position:405-710
               
               
               Cow position:chr18:33093118-33092813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:410-708
               
               
               Cow position:chr18:50250835-50251126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):149, 69

               
               
               Conread position:410-710
               
               
               Cow position:chr18:14453295-14452995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:210
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):74, 53

               
               
               Conread position:417-708
               
               
               Cow position:chr18:51838786-51838496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):196, 0

               
               
               Conread position:420-683
               
               
               Cow position:chr18:43053456-43053193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:442-709
               
               
               Cow position:chr18:54992677-54992944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):119, 113

               
               
               Conread position:465-710
               
               
               Cow position:chr18:42827368-42827613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:475-715
               
               
               Cow position:chr18:42837962-42837722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:479-713
               
               
               Cow position:chr18:14454042-14453808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):112, 124

               
               
               Conread position:482-715
               
               
               Cow position:chr18:56248176-56247945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:1-345
               
               
               Cow position:chr19:23597369-23597713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:229
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):279, 286

               
               
               Conread position:1-457
               
               
               Cow position:chr19:20678291-20678744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:286
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):59, 40

               
               
               Conread position:1-591
               
               
               Cow position:chr19:23614528-23615118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 210

               
               
               Conread position:1-656
               
               
               Cow position:chr19:23649810-23650465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:658
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):378, 390

               
               
               Conread position:1-709
               
               
               Cow position:chr19:14939992-14940700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):615, 630

               
               
               Conread position:1-709
               
               
               Cow position:chr19:23613436-23614144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:470
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):557, 544

               
               
               Conread position:1-709
               
               
               Cow position:chr19:23614024-23614732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:476
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 51

               
               
               Conread position:1-712
               
               
               Cow position:chr19:23613352-23614063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-716
               
               
               Cow position:chr19:23614108-23614823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:469
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):303, 284

               
               
               Conread position:1-718
               
               
               Cow position:chr19:23613520-23614237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:475
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):390, 362

               
               
               Conread position:2-655
               
               
               Cow position:chr19:14940412-14941066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:656
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 645

               
               
               Conread position:3-509
               
               
               Cow position:chr19:23649980-23650486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):303, 281

               
               
               Conread position:3-697
               
               
               Cow position:chr19:14940162-14940856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:695
               
               
               Alignm identity:463
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-709
               
               
               Cow position:chr19:20677789-20678495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:709
               
               
               Alignm identity:457
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 157

               
               
               Conread position:3-709
               
               
               Cow position:chr19:23613690-23614396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:708
               
               
               Alignm identity:464
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 217

               
               
               Conread position:3-710
               
               
               Cow position:chr19:14960051-14959360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 42

               
               
               Conread position:7-436
               
               
               Cow position:chr19:20635371-20634946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:264
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):126, 119

               
               
               Conread position:7-436
               
               
               Cow position:chr19:43570130-43569703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:281
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):202, 210

               
               
               Conread position:7-678
               
               
               Cow position:chr19:14960381-14959714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:676
               
               
               Alignm identity:452
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 37

               
               
               Conread position:7-706
               
               
               Cow position:chr19:23649480-23650179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 280

               
               
               Conread position:7-710
               
               
               Cow position:chr19:14959559-14958871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):291, 253

               
               
               Conread position:8-465
               
               
               Cow position:chr19:14948455-14947999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:286
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:9-710
               
               
               Cow position:chr19:23596876-23597574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 26

               
               
               Conread position:10-490
               
               
               Cow position:chr19:14940589-14941069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):367, 372

               
               
               Conread position:10-528
               
               
               Cow position:chr19:20635536-20635018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 19

               
               
               Conread position:10-540
               
               
               Cow position:chr19:43570211-43569685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):385, 391

               
               
               Conread position:10-709
               
               
               Cow position:chr19:23614369-23615068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):288, 274

               
               
               Conread position:10-710
               
               
               Cow position:chr19:14940253-14940953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:469
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):366, 372

               
               
               Conread position:10-710
               
               
               Cow position:chr19:14940337-14941037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:470
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 88

               
               
               Conread position:10-710
               
               
               Cow position:chr19:23613613-23614313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 19

               
               
               Conread position:10-710
               
               
               Cow position:chr19:23613865-23614565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:474
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 19

               
               
               Conread position:13-586
               
               
               Cow position:chr19:23649906-23650479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 43

               
               
               Conread position:13-710
               
               
               Cow position:chr19:23613784-23614481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:468
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):276, 271

               
               
               Conread position:14-677
               
               
               Cow position:chr19:23614457-23615118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:666
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 15

               
               
               Conread position:14-703
               
               
               Cow position:chr19:23649739-23650428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:691
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):363, 377

               
               
               Conread position:35-679
               
               
               Cow position:chr19:23597067-23597711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:647
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):342, 351

               
               
               Conread position:35-715
               
               
               Cow position:chr19:14960437-14959762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:682
               
               
               Alignm identity:470
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):556, 290

               
               
               Conread position:39-338
               
               
               Cow position:chr19:14959122-14958823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:60-710
               
               
               Cow position:chr19:23614335-23614985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:652
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):578, 563

               
               
               Conread position:62-574
               
               
               Cow position:chr19:14940557-14941069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):231, 222

               
               
               Conread position:62-667
               
               
               Cow position:chr19:43570243-43569642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):235, 222

               
               
               Conread position:65-429
               
               
               Cow position:chr19:23597349-23597713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:234
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:65-710
               
               
               Cow position:chr19:23649454-23650099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:647
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):312, 321

               
               
               Conread position:66-697
               
               
               Cow position:chr19:23649707-23650338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):311, 316

               
               
               Conread position:67-710
               
               
               Cow position:chr19:20677685-20678328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:648
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 63

               
               
               Conread position:67-710
               
               
               Cow position:chr19:20677769-20678412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:647
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):308, 319

               
               
               Conread position:68-709
               
               
               Cow position:chr19:43570395-43569764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:643
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):404, 117

               
               
               Conread position:73-708
               
               
               Cow position:chr19:23614264-23614899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:640
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 123

               
               
               Conread position:73-709
               
               
               Cow position:chr19:14940148-14940784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:639
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 214

               
               
               Conread position:73-710
               
               
               Cow position:chr19:14960483-14959848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:638
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):302, 0

               
               
               Conread position:76-676
               
               
               Cow position:chr19:20635638-20635038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 74

               
               
               Conread position:76-706
               
               
               Cow position:chr19:23613343-23613973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:634
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):230, 208

               
               
               Conread position:76-710
               
               
               Cow position:chr19:20677946-20678580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:641
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 55

               
               
               Conread position:76-710
               
               
               Cow position:chr19:23649381-23650015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:636
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):408, 402

               
               
               Conread position:78-536
               
               
               Cow position:chr19:14948469-14948012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):391, 66

               
               
               Conread position:78-709
               
               
               Cow position:chr19:20678032-20678663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 143

               
               
               Conread position:82-508
               
               
               Cow position:chr19:20678288-20678714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 43

               
               
               Conread position:82-710
               
               
               Cow position:chr19:14959568-14958955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):295, 262

               
               
               Conread position:82-710
               
               
               Cow position:chr19:23649303-23649931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):295, 308

               
               
               Conread position:82-710
               
               
               Cow position:chr19:23649639-23650267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 203

               
               
               Conread position:83-710
               
               
               Cow position:chr19:20677533-20678160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):491, 472

               
               
               Conread position:84-709
               
               
               Cow position:chr19:14939989-14940616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:84-710
               
               
               Cow position:chr19:23614023-23614649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):308, 304

               
               
               Conread position:85-709
               
               
               Cow position:chr19:14959650-14959040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 343

               
               
               Conread position:104-716
               
               
               Cow position:chr19:20677305-20677913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 54

               
               
               Conread position:108-703
               
               
               Cow position:chr19:14959708-14959124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 19

               
               
               Conread position:108-710
               
               
               Cow position:chr19:20677642-20678244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 25

               
               
               Conread position:114-715
               
               
               Cow position:chr19:23597062-23597663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:401
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):370, 363

               
               
               Conread position:132-710
               
               
               Cow position:chr19:23596831-23597406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):254, 201

               
               
               Conread position:144-634
               
               
               Cow position:chr19:14948487-14947998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):424, 78

               
               
               Conread position:146-678
               
               
               Cow position:chr19:14916028-14916543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:537
               
               
               Alignm identity:340
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):269, 107

               
               
               Conread position:146-710
               
               
               Cow position:chr19:20635808-20635256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:350
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):105, 70

               
               
               Conread position:147-674
               
               
               Cow position:chr19:14959335-14958823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 29

               
               
               Conread position:148-710
               
               
               Cow position:chr19:43570398-43569847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):331, 5

               
               
               Conread position:150-594
               
               
               Cow position:chr19:14959257-14958819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:153-709
               
               
               Cow position:chr19:20635729-20635173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:562
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 50

               
               
               Conread position:158-619
               
               
               Cow position:chr19:14915955-14916413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:292
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):58, 13

               
               
               Conread position:158-710
               
               
               Cow position:chr19:20635640-20635088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:554
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 58

               
               
               Conread position:158-715
               
               
               Cow position:chr19:20677440-20677997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:564
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 46

               
               
               Conread position:171-713
               
               
               Cow position:chr19:23613354-23613896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):389, 396

               
               
               Conread position:230-710
               
               
               Cow position:chr19:23649283-23649763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 59

               
               
               Conread position:231-673
               
               
               Cow position:chr19:14948484-14948043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 80

               
               
               Conread position:249-713
               
               
               Cow position:chr19:14939988-14940452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):235, 229

               
               
               Conread position:276-712
               
               
               Cow position:chr19:14960448-14960014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 12

               
               
               Conread position:294-710
               
               
               Cow position:chr19:23596825-23597238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:258
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):19, 10

               
               
               Conread position:300-720
               
               
               Cow position:chr19:23613315-23613734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):411, 0

               
               
               Conread position:313-710
               
               
               Cow position:chr19:23649282-23649679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:315-716
               
               
               Cow position:chr19:14948484-14948084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:316-716
               
               
               Cow position:chr19:43570398-43570009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:258
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):61, 5

               
               
               Conread position:476-710
               
               
               Cow position:chr19:14939966-14940197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:1-669
               
               
               Cow position:chr2:82799780-82800448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:672
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):279, 286

               
               
               Conread position:1-710
               
               
               Cow position:chr2:82799696-82800405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 237

               
               
               Conread position:3-678
               
               
               Cow position:chr2:78755672-78756346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 30

               
               
               Conread position:3-687
               
               
               Cow position:chr2:86465522-86466206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:399
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):210, 219

               
               
               Conread position:3-709
               
               
               Cow position:chr2:78754350-78755038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:3-710
               
               
               Cow position:chr2:78755004-78755707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:708
               
               
               Alignm identity:468
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):333, 0

               
               
               Conread position:7-683
               
               
               Cow position:chr2:78755343-78756016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:681
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):291, 170

               
               
               Conread position:7-709
               
               
               Cow position:chr2:82799534-82800237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 37

               
               
               Conread position:7-710
               
               
               Cow position:chr2:78754840-78755541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):384, 379

               
               
               Conread position:7-710
               
               
               Cow position:chr2:78755510-78756212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:709
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):292, 157

               
               
               Conread position:7-710
               
               
               Cow position:chr2:82799618-82800321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 36

               
               
               Conread position:9-709
               
               
               Cow position:chr2:5875172-5874471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:417
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):261, 266

               
               
               Conread position:11-710
               
               
               Cow position:chr2:78754109-78754799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 24

               
               
               Conread position:35-703
               
               
               Cow position:chr2:82799478-82800146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:671
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):245, 252

               
               
               Conread position:66-508
               
               
               Cow position:chr2:48689474-48689033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:269
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):43, 37

               
               
               Conread position:70-535
               
               
               Cow position:chr2:82799933-82800398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:76-700
               
               
               Cow position:chr2:5874769-5874145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 147

               
               
               Conread position:76-715
               
               
               Cow position:chr2:86465175-86465813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:645
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 78

               
               
               Conread position:76-719
               
               
               Cow position:chr2:86465511-86466153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:647
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 208

               
               
               Conread position:78-408
               
               
               Cow position:chr2:5874431-5874101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):119, 158

               
               
               Conread position:78-709
               
               
               Cow position:chr2:78754827-78755457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 206

               
               
               Conread position:78-709
               
               
               Cow position:chr2:78755663-78756295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:636
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 133

               
               
               Conread position:79-700
               
               
               Cow position:chr2:5875018-5874397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:374
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):107, 112

               
               
               Conread position:83-713
               
               
               Cow position:chr2:86465266-86465897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:638
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):212, 201

               
               
               Conread position:84-702
               
               
               Cow position:chr2:5874929-5874313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 54

               
               
               Conread position:95-710
               
               
               Cow position:chr2:82799454-82800069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 193

               
               
               Conread position:98-710
               
               
               Cow position:chr2:86465113-86465725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:372
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):36, 28

               
               
               Conread position:108-710
               
               
               Cow position:chr2:78754371-78754955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 72

               
               
               Conread position:145-712
               
               
               Cow position:chr2:78754810-78755376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):527, 0

               
               
               Conread position:146-709
               
               
               Cow position:chr2:86465077-86465640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:348
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):84, 63

               
               
               Conread position:159-715
               
               
               Cow position:chr2:86465006-86465562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:561
               
               
               Alignm identity:336
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):104, 93

               
               
               Conread position:171-616
               
               
               Cow position:chr2:48689538-48689093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:271
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):9, 121

               
               
               Conread position:178-710
               
               
               Cow position:chr2:82799453-82799985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:534
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):306, 300

               
               
               Conread position:252-700
               
               
               Cow position:chr2:48689540-48689093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:278
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):64, 43

               
               
               Conread position:254-709
               
               
               Cow position:chr2:78754100-78754550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:294
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):47, 33

               
               
               Conread position:255-701
               
               
               Cow position:chr2:5875178-5874732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:281
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):267, 272

               
               
               Conread position:351-712
               
               
               Cow position:chr2:48689525-48689165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):43, 33

               
               
               Conread position:3-710
               
               
               Cow position:chr21:12659256-12659963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:709
               
               
               Alignm identity:409
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):67, 48

               
               
               Conread position:7-708
               
               
               Cow position:chr21:12608670-12607968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:409
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):381, 362

               
               
               Conread position:25-426
               
               
               Cow position:chr21:34222942-34222541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:257
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):44, 22

               
               
               Conread position:76-709
               
               
               Cow position:chr21:12608853-12608219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:636
               
               
               Alignm identity:377
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):219, 208

               
               
               Conread position:78-708
               
               
               Cow position:chr21:12608767-12608136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:636
               
               
               Alignm identity:374
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):31, 25

               
               
               Conread position:82-580
               
               
               Cow position:chr21:12608427-12607929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:305
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):129, 115

               
               
               Conread position:82-678
               
               
               Cow position:chr21:34223134-34222541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 21

               
               
               Conread position:84-592
               
               
               Cow position:chr21:34223051-34222543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):305, 285

               
               
               Conread position:84-703
               
               
               Cow position:chr21:12658917-12659536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):198, 204

               
               
               Conread position:147-708
               
               
               Cow position:chr21:34223153-34222594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 70

               
               
               Conread position:189-713
               
               
               Cow position:chr21:12608908-12608383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):380, 366

               
               
               Conread position:228-708
               
               
               Cow position:chr21:34223156-34222678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 70

               
               
               Conread position:333-708
               
               
               Cow position:chr21:12658830-12659206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:232
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):232, 222

               
               
               Conread position:1-332
               
               
               Cow position:chr22:12430898-12430567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-345
               
               
               Cow position:chr22:12475631-12475287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 28

               
               
               Conread position:1-345
               
               
               Cow position:chr22:12499628-12499972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:229
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):36, 28

               
               
               Conread position:1-506
               
               
               Cow position:chr22:12385412-12384907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):374, 385

               
               
               Conread position:1-669
               
               
               Cow position:chr22:12399422-12398754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:670
               
               
               Alignm identity:449
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):376, 390

               
               
               Conread position:1-688
               
               
               Cow position:chr22:12431318-12430629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:691
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 28

               
               
               Conread position:1-710
               
               
               Cow position:chr22:12431990-12431281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 200

               
               
               Conread position:2-576
               
               
               Cow position:chr22:12419024-12418450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 45

               
               
               Conread position:3-413
               
               
               Cow position:chr22:12418855-12418445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:249
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):388, 384

               
               
               Conread position:3-594
               
               
               Cow position:chr22:12499378-12499969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 145

               
               
               Conread position:3-595
               
               
               Cow position:chr22:11640862-11641455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 211

               
               
               Conread position:3-630
               
               
               Cow position:chr22:46654185-46654812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 40

               
               
               Conread position:3-703
               
               
               Cow position:chr22:12431652-12430952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 47

               
               
               Conread position:3-709
               
               
               Cow position:chr22:12431400-12430694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 220

               
               
               Conread position:3-709
               
               
               Cow position:chr22:12431484-12430778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:464
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 44

               
               
               Conread position:3-709
               
               
               Cow position:chr22:12431736-12431029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:709
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 218

               
               
               Conread position:3-710
               
               
               Cow position:chr22:11640694-11641401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 60

               
               
               Conread position:3-710
               
               
               Cow position:chr22:12476049-12475342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:470
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 55

               
               
               Conread position:3-718
               
               
               Cow position:chr22:14430154-14430869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 60

               
               
               Conread position:7-623
               
               
               Cow position:chr22:12458348-12457729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 50

               
               
               Conread position:7-706
               
               
               Cow position:chr22:12458516-12457817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:701
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 40

               
               
               Conread position:10-668
               
               
               Cow position:chr22:12431225-12430567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:661
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):277, 288

               
               
               Conread position:10-703
               
               
               Cow position:chr22:12431897-12431204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:695
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 34

               
               
               Conread position:10-703
               
               
               Cow position:chr22:12499217-12499910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:698
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 19

               
               
               Conread position:10-709
               
               
               Cow position:chr22:12399665-12398966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:701
               
               
               Alignm identity:474
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 194

               
               
               Conread position:10-710
               
               
               Cow position:chr22:12432149-12431449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):296, 286

               
               
               Conread position:10-710
               
               
               Cow position:chr22:12432317-12431617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 123

               
               
               Conread position:10-710
               
               
               Cow position:chr22:12544592-12545293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:431
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):40, 34

               
               
               Conread position:10-712
               
               
               Cow position:chr22:12498965-12499667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):390, 361

               
               
               Conread position:10-716
               
               
               Cow position:chr22:12476126-12475421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:708
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):199, 211

               
               
               Conread position:12-710
               
               
               Cow position:chr22:12385655-12384955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:460
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 102

               
               
               Conread position:13-508
               
               
               Cow position:chr22:12475787-12475292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:13-710
               
               
               Cow position:chr22:12399578-12398881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:701
               
               
               Alignm identity:475
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 120

               
               
               Conread position:14-703
               
               
               Cow position:chr22:12399493-12398804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:694
               
               
               Alignm identity:477
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 15

               
               
               Conread position:15-508
               
               
               Cow position:chr22:12499474-12499967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):367, 361

               
               
               Conread position:15-677
               
               
               Cow position:chr22:12458424-12457762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:666
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 18

               
               
               Conread position:15-710
               
               
               Cow position:chr22:12431808-12431113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:697
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):365, 377

               
               
               Conread position:22-710
               
               
               Cow position:chr22:12476366-12475678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):362, 369

               
               
               Conread position:25-683
               
               
               Cow position:chr22:46654123-46654781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:663
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 20

               
               
               Conread position:25-703
               
               
               Cow position:chr22:12476279-12475601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:682
               
               
               Alignm identity:453
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):264, 258

               
               
               Conread position:25-710
               
               
               Cow position:chr22:12419270-12418568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 383

               
               
               Conread position:25-710
               
               
               Cow position:chr22:12458582-12457897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:687
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):521, 533

               
               
               Conread position:62-424
               
               
               Cow position:chr22:11701332-11701694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):86, 75

               
               
               Conread position:62-709
               
               
               Cow position:chr22:12399697-12399049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:654
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 71

               
               
               Conread position:65-594
               
               
               Cow position:chr22:12475819-12475290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 83

               
               
               Conread position:65-676
               
               
               Cow position:chr22:12475903-12475292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 219

               
               
               Conread position:65-676
               
               
               Cow position:chr22:12499356-12499967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 219

               
               
               Conread position:65-710
               
               
               Cow position:chr22:12399778-12399133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:648
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 66

               
               
               Conread position:65-710
               
               
               Cow position:chr22:12498936-12499581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:647
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):312, 326

               
               
               Conread position:66-710
               
               
               Cow position:chr22:12499105-12499749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:645
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:71-710
               
               
               Cow position:chr22:14429634-14430273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:646
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 62

               
               
               Conread position:73-429
               
               
               Cow position:chr22:12499616-12499972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:234
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):158, 142

               
               
               Conread position:73-635
               
               
               Cow position:chr22:12544739-12545301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:340
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):145, 131

               
               
               Conread position:73-673
               
               
               Cow position:chr22:12385510-12384908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 61

               
               
               Conread position:73-709
               
               
               Cow position:chr22:46654003-46654639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:642
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 218

               
               
               Conread position:73-712
               
               
               Cow position:chr22:46654087-46654726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:645
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 132

               
               
               Conread position:76-717
               
               
               Cow position:chr22:12499199-12499839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:643
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 145

               
               
               Conread position:78-543
               
               
               Cow position:chr22:14468306-14468761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:289
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):59, 49

               
               
               Conread position:82-590
               
               
               Cow position:chr22:12385415-12384907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:82-677
               
               
               Cow position:chr22:14468058-14468653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:368
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):224, 202

               
               
               Conread position:82-679
               
               
               Cow position:chr22:11640857-11641454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):297, 282

               
               
               Conread position:82-710
               
               
               Cow position:chr22:12432497-12431869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:82-712
               
               
               Cow position:chr22:12476390-12475760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):212, 202

               
               
               Conread position:82-712
               
               
               Cow position:chr22:12498869-12499499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):212, 202

               
               
               Conread position:84-709
               
               
               Cow position:chr22:12431487-12430861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):296, 307

               
               
               Conread position:84-709
               
               
               Cow position:chr22:12432159-12431533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 139

               
               
               Conread position:84-710
               
               
               Cow position:chr22:12432327-12431701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 133

               
               
               Conread position:84-710
               
               
               Cow position:chr22:12432411-12431785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):568, 562

               
               
               Conread position:84-710
               
               
               Cow position:chr22:12476136-12475510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 131

               
               
               Conread position:85-699
               
               
               Cow position:chr22:12385666-12385050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 132

               
               
               Conread position:85-709
               
               
               Cow position:chr22:12458606-12457982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):544, 558

               
               
               Conread position:85-712
               
               
               Cow position:chr22:11640692-11641319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 57

               
               
               Conread position:85-715
               
               
               Cow position:chr22:12419294-12418647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:648
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 0

               
               
               Conread position:85-715
               
               
               Cow position:chr22:14467977-14468607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:639
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 54

               
               
               Conread position:89-709
               
               
               Cow position:chr22:12399838-12399218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):290, 297

               
               
               Conread position:89-710
               
               
               Cow position:chr22:12544585-12545208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:371
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):17, 313

               
               
               Conread position:93-710
               
               
               Cow position:chr22:11640614-11641233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 57

               
               
               Conread position:101-709
               
               
               Cow position:chr22:14429499-14430105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 119

               
               
               Conread position:105-709
               
               
               Cow position:chr22:46653951-46654555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 99

               
               
               Conread position:108-532
               
               
               Cow position:chr22:14430595-14431012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:263
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):15, 39

               
               
               Conread position:108-543
               
               
               Cow position:chr22:11666472-11666907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:283
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):123, 108

               
               
               Conread position:108-676
               
               
               Cow position:chr22:11701126-11701694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 110

               
               
               Conread position:108-710
               
               
               Cow position:chr22:14441985-14442587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:364
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):18, 25

               
               
               Conread position:123-710
               
               
               Cow position:chr22:12419340-12418736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):254, 0

               
               
               Conread position:138-712
               
               
               Cow position:chr22:11640577-11641151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 110

               
               
               Conread position:140-710
               
               
               Cow position:chr22:12385695-12385123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 61

               
               
               Conread position:146-710
               
               
               Cow position:chr22:12476410-12475846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 142

               
               
               Conread position:146-710
               
               
               Cow position:chr22:12498849-12499413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 142

               
               
               Conread position:146-710
               
               
               Cow position:chr22:14441939-14442503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:345
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):160, 135

               
               
               Conread position:148-675
               
               
               Cow position:chr22:11666428-11666955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:534
               
               
               Alignm identity:330
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):166, 153

               
               
               Conread position:148-710
               
               
               Cow position:chr22:12458627-12458065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:166-715
               
               
               Cow position:chr22:11701099-11701649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:553
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 299

               
               
               Conread position:171-708
               
               
               Cow position:chr22:12419023-12418485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):531, 0

               
               
               Conread position:171-712
               
               
               Cow position:chr22:12399918-12399383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 51

               
               
               Conread position:216-710
               
               
               Cow position:chr22:12400041-12399553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:320
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):60, 55

               
               
               Conread position:221-710
               
               
               Cow position:chr22:12498840-12499329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):431, 426

               
               
               Conread position:229-710
               
               
               Cow position:chr22:14467953-14468434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:303
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):163, 159

               
               
               Conread position:280-613
               
               
               Cow position:chr22:12419352-12419019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):7, 107

               
               
               Conread position:293-710
               
               
               Cow position:chr22:12385710-12385291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 40

               
               
               Conread position:312-709
               
               
               Cow position:chr22:12458631-12458234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:350-710
               
               
               Cow position:chr22:11666462-11666822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:232
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):111, 132

               
               
               Conread position:391-710
               
               
               Cow position:chr22:12544469-12544788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):43, 50

               
               
               Conread position:398-715
               
               
               Cow position:chr22:11640669-11640986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:212
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:399-712
               
               
               Cow position:chr22:12498850-12499163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):227, 232

               
               
               Conread position:400-710
               
               
               Cow position:chr22:11701082-11701392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):165, 154

               
               
               Conread position:458-709
               
               
               Cow position:chr22:12385713-12385462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):50, 43

               
               
               Conread position:471-712
               
               
               Cow position:chr22:11640574-11640815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):121, 114

               
               
               Conread position:1-337
               
               
               Cow position:chr23:24654119-24654455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):38, 28

               
               
               Conread position:1-342
               
               
               Cow position:chr23:25660405-25660746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):147, 141

               
               
               Conread position:1-512
               
               
               Cow position:chr23:25626536-25627044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):305, 46

               
               
               Conread position:1-543
               
               
               Cow position:chr23:24522731-24522192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 28

               
               
               Conread position:2-464
               
               
               Cow position:chr23:24535874-24535411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:279
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):398, 386

               
               
               Conread position:2-679
               
               
               Cow position:chr23:24639387-24640064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:679
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):375, 380

               
               
               Conread position:3-443
               
               
               Cow position:chr23:24626312-24626750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 26

               
               
               Conread position:3-491
               
               
               Cow position:chr23:25698568-25698080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:308
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):229, 210

               
               
               Conread position:3-509
               
               
               Cow position:chr23:25723955-25723453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:301
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):303, 243

               
               
               Conread position:3-510
               
               
               Cow position:chr23:25660239-25660746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 147

               
               
               Conread position:3-512
               
               
               Cow position:chr23:24560634-24560125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:6-710
               
               
               Cow position:chr23:24639307-24640011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:709
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 94

               
               
               Conread position:7-520
               
               
               Cow position:chr23:24547154-24546641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:9-709
               
               
               Cow position:chr23:24560880-24560180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:457
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 62

               
               
               Conread position:10-706
               
               
               Cow position:chr23:24522473-24521775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:431
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):308, 391

               
               
               Conread position:14-677
               
               
               Cow position:chr23:24547315-24546653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:664
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):660, 0

               
               
               Conread position:15-429
               
               
               Cow position:chr23:24639652-24640066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:266
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):133, 127

               
               
               Conread position:15-583
               
               
               Cow position:chr23:25660167-25660735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 201

               
               
               Conread position:21-709
               
               
               Cow position:chr23:25625969-25626653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:692
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):356, 15

               
               
               Conread position:22-710
               
               
               Cow position:chr23:24639239-24639927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:693
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 30

               
               
               Conread position:60-593
               
               
               Cow position:chr23:24547185-24546652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):315, 325

               
               
               Conread position:61-592
               
               
               Cow position:chr23:24560660-24560129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:65-690
               
               
               Cow position:chr23:25626432-25627055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 107

               
               
               Conread position:65-710
               
               
               Cow position:chr23:25626264-25626906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:647
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 150

               
               
               Conread position:72-508
               
               
               Cow position:chr23:24626297-24626733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 28

               
               
               Conread position:73-631
               
               
               Cow position:chr23:24535971-24535412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):525, 0

               
               
               Conread position:78-592
               
               
               Cow position:chr23:25626530-25627040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 5

               
               
               Conread position:78-610
               
               
               Cow position:chr23:24639547-24640079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:78-709
               
               
               Cow position:chr23:25626361-25626989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:637
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 164

               
               
               Conread position:78-712
               
               
               Cow position:chr23:24536050-24535415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:638
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):484, 466

               
               
               Conread position:82-509
               
               
               Cow position:chr23:24654116-24654535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:269
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):388, 288

               
               
               Conread position:83-710
               
               
               Cow position:chr23:24547330-24546703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 132

               
               
               Conread position:83-712
               
               
               Cow position:chr23:24560890-24560261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:84-413
               
               
               Cow position:chr23:25724042-25723713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:86-708
               
               
               Cow position:chr23:24522814-24522194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):616, 201

               
               
               Conread position:92-430
               
               
               Cow position:chr23:24654042-24654380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):289, 275

               
               
               Conread position:98-536
               
               
               Cow position:chr23:24522118-24521693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:275
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):360, 111

               
               
               Conread position:99-631
               
               
               Cow position:chr23:24522717-24522188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 108

               
               
               Conread position:99-657
               
               
               Cow position:chr23:25698640-25698082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:562
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):278, 292

               
               
               Conread position:99-717
               
               
               Cow position:chr23:24639232-24639849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):253, 245

               
               
               Conread position:106-677
               
               
               Cow position:chr23:24560699-24560128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:106-678
               
               
               Cow position:chr23:25660174-25660746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 198

               
               
               Conread position:108-519
               
               
               Cow position:chr23:25724102-25723692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 292

               
               
               Conread position:133-611
               
               
               Cow position:chr23:24626274-24626750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 30

               
               
               Conread position:146-708
               
               
               Cow position:chr23:25698677-25698114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):354, 369

               
               
               Conread position:146-710
               
               
               Cow position:chr23:25626009-25626573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 71

               
               
               Conread position:162-719
               
               
               Cow position:chr23:25660146-25660702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 229

               
               
               Conread position:173-456
               
               
               Cow position:chr23:24521972-24521689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):201, 236

               
               
               Conread position:176-519
               
               
               Cow position:chr23:24654042-24654385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:228
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:216-710
               
               
               Cow position:chr23:24626201-24626683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 50

               
               
               Conread position:217-683
               
               
               Cow position:chr23:24626274-24626738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):448, 0

               
               
               Conread position:221-710
               
               
               Cow position:chr23:25698686-25698197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:307
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):79, 70

               
               
               Conread position:238-710
               
               
               Cow position:chr23:24560903-24560431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 50

               
               
               Conread position:247-716
               
               
               Cow position:chr23:24547334-24546864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 46

               
               
               Conread position:252-709
               
               
               Cow position:chr23:24522814-24522362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:289
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):100, 24

               
               
               Conread position:261-599
               
               
               Cow position:chr23:24654043-24654381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:265-710
               
               
               Cow position:chr23:24639230-24639675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:286
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):151, 159

               
               
               Conread position:267-657
               
               
               Cow position:chr23:25724111-25723721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 17

               
               
               Conread position:344-678
               
               
               Cow position:chr23:24654042-24654376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:351-709
               
               
               Cow position:chr23:25724111-25723753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):118, 113

               
               
               Conread position:406-709
               
               
               Cow position:chr23:24626141-24626431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):296, 12

               
               
               Conread position:428-710
               
               
               Cow position:chr23:24654042-24654324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:435-703
               
               
               Cow position:chr23:25724111-25723843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-436
               
               
               Cow position:chr24:17035369-17034935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:270
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):28, 19

               
               
               Conread position:1-710
               
               
               Cow position:chr24:17078260-17077551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):567, 561

               
               
               Conread position:2-368
               
               
               Cow position:chr24:17077840-17077474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):9, 28

               
               
               Conread position:3-588
               
               
               Cow position:chr24:17070462-17071047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 44

               
               
               Conread position:7-444
               
               
               Cow position:chr24:17077918-17077482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 38

               
               
               Conread position:7-697
               
               
               Cow position:chr24:17035699-17035009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:693
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 38

               
               
               Conread position:7-710
               
               
               Cow position:chr24:17035951-17035248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:463
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):611, 618

               
               
               Conread position:10-710
               
               
               Cow position:chr24:17036116-17035416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:457
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):292, 285

               
               
               Conread position:13-548
               
               
               Cow position:chr24:17077996-17077462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):492, 0

               
               
               Conread position:13-703
               
               
               Cow position:chr24:17036365-17035675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:692
               
               
               Alignm identity:458
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):198, 184

               
               
               Conread position:14-683
               
               
               Cow position:chr24:17036028-17035359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:674
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 203

               
               
               Conread position:25-520
               
               
               Cow position:chr24:17035429-17034935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:306
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):490, 0

               
               
               Conread position:61-710
               
               
               Cow position:chr24:17036485-17035836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:650
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-432
               
               
               Cow position:chr24:17070689-17071059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 157

               
               
               Conread position:65-674
               
               
               Cow position:chr24:17078112-17077503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:65-682
               
               
               Cow position:chr24:17036397-17035780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 210

               
               
               Conread position:65-683
               
               
               Cow position:chr24:17036229-17035611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):408, 398

               
               
               Conread position:65-688
               
               
               Cow position:chr24:17035557-17034933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):550, 560

               
               
               Conread position:65-689
               
               
               Cow position:chr24:17036145-17035521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):404, 399

               
               
               Conread position:65-709
               
               
               Cow position:chr24:17035809-17035164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:646
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):637, 0

               
               
               Conread position:66-284
               
               
               Cow position:chr24:17013314-17013531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):41, 37

               
               
               Conread position:73-710
               
               
               Cow position:chr24:17035717-17035080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:638
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:76-712
               
               
               Cow position:chr24:17078269-17077633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:637
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:82-426
               
               
               Cow position:chr24:17013162-17013506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:231
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):150, 137

               
               
               Conread position:84-709
               
               
               Cow position:chr24:17036546-17035921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):293, 301

               
               
               Conread position:92-678
               
               
               Cow position:chr24:17070465-17071053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:590
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 371

               
               
               Conread position:99-683
               
               
               Cow position:chr24:17036612-17036031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):437, 53

               
               
               Conread position:106-709
               
               
               Cow position:chr24:17070399-17071000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:169-560
               
               
               Cow position:chr24:17013165-17013556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):208, 213

               
               
               Conread position:188-710
               
               
               Cow position:chr24:17036607-17036088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:194-614
               
               
               Cow position:chr24:17013109-17013525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:277
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):21, 30

               
               
               Conread position:236-712
               
               
               Cow position:chr24:17070443-17070919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):355, 362

               
               
               Conread position:250-465
               
               
               Cow position:chr24:16986428-16986643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):126, 113

               
               
               Conread position:264-710
               
               
               Cow position:chr24:17070387-17070833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 43

               
               
               Conread position:319-678
               
               
               Cow position:chr24:17013147-17013506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:238
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):165, 142

               
               
               Conread position:403-703
               
               
               Cow position:chr24:17013147-17013447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):163, 152

               
               
               Conread position:1-459
               
               
               Cow position:chr25:34714035-34714493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:280
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):234, 240

               
               
               Conread position:1-592
               
               
               Cow position:chr25:326666-327263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:371
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):226, 220

               
               
               Conread position:1-619
               
               
               Cow position:chr25:34769871-34769252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 44

               
               
               Conread position:1-710
               
               
               Cow position:chr25:34433525-34434216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:425
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):246, 81

               
               
               Conread position:2-656
               
               
               Cow position:chr25:34713868-34714522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:661
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 27

               
               
               Conread position:3-253
               
               
               Cow position:chr25:33145185-33145435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):67, 55

               
               
               Conread position:3-313
               
               
               Cow position:chr25:33157050-33156737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):269, 260

               
               
               Conread position:3-328
               
               
               Cow position:chr25:23420554-23420879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-340
               
               
               Cow position:chr25:36801630-36801967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-373
               
               
               Cow position:chr25:34769617-34769247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:240
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-524
               
               
               Cow position:chr25:33127721-33128242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 26

               
               
               Conread position:3-589
               
               
               Cow position:chr25:36801378-36801962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):578, 0

               
               
               Conread position:3-663
               
               
               Cow position:chr25:33299238-33299893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:662
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 124

               
               
               Conread position:3-703
               
               
               Cow position:chr25:33299070-33299770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 124

               
               
               Conread position:3-704
               
               
               Cow position:chr25:33298734-33299435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 104

               
               
               Conread position:3-704
               
               
               Cow position:chr25:36800634-36801335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 26

               
               
               Conread position:3-710
               
               
               Cow position:chr25:33298818-33299525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:471
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):372, 376

               
               
               Conread position:7-496
               
               
               Cow position:chr25:23420390-23420879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):370, 375

               
               
               Conread position:7-592
               
               
               Cow position:chr25:34447281-34447857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):222, 213

               
               
               Conread position:7-606
               
               
               Cow position:chr25:33157382-33156784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 86

               
               
               Conread position:7-704
               
               
               Cow position:chr25:33298570-33299267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:701
               
               
               Alignm identity:466
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 44

               
               
               Conread position:7-709
               
               
               Cow position:chr25:326504-327213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 50

               
               
               Conread position:7-709
               
               
               Cow position:chr25:34732601-34731898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:708
               
               
               Alignm identity:409
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):293, 284

               
               
               Conread position:7-709
               
               
               Cow position:chr25:34770033-34769331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:463
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):561, 555

               
               
               Conread position:8-710
               
               
               Cow position:chr25:23420070-23420757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:452
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 104

               
               
               Conread position:10-258
               
               
               Cow position:chr25:327017-327265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):60, 41

               
               
               Conread position:10-542
               
               
               Cow position:chr25:33305309-33304788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:332
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):265, 186

               
               
               Conread position:12-712
               
               
               Cow position:chr25:33298659-33299359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 39

               
               
               Conread position:13-590
               
               
               Cow position:chr25:33305389-33304822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 56

               
               
               Conread position:13-710
               
               
               Cow position:chr25:33306201-33305512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 13

               
               
               Conread position:25-703
               
               
               Cow position:chr25:33298924-33299602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:681
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 192

               
               
               Conread position:29-708
               
               
               Cow position:chr25:25652301-25652981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:683
               
               
               Alignm identity:399
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):348, 362

               
               
               Conread position:41-710
               
               
               Cow position:chr25:34713823-34714492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:676
               
               
               Alignm identity:406
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):88, 93

               
               
               Conread position:62-679
               
               
               Cow position:chr25:33157411-33156794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-709
               
               
               Cow position:chr25:34447084-34447729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:650
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):338, 326

               
               
               Conread position:62-710
               
               
               Cow position:chr25:34732462-34731814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:653
               
               
               Alignm identity:387
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):333, 339

               
               
               Conread position:63-541
               
               
               Cow position:chr25:23420362-23420840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 153

               
               
               Conread position:63-575
               
               
               Cow position:chr25:36844641-36844142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:310
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):312, 285

               
               
               Conread position:65-581
               
               
               Cow position:chr25:34769723-34769207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):312, 317

               
               
               Conread position:65-710
               
               
               Cow position:chr25:34770059-34769414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:647
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):320, 312

               
               
               Conread position:66-340
               
               
               Cow position:chr25:34769470-34769196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:66-362
               
               
               Cow position:chr25:366791-367083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):265, 0

               
               
               Conread position:66-413
               
               
               Cow position:chr25:346514-346861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:208
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):141, 152

               
               
               Conread position:66-508
               
               
               Cow position:chr25:22235895-22236337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:277
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):41, 37

               
               
               Conread position:68-620
               
               
               Cow position:chr25:33305979-33305433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:557
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 28

               
               
               Conread position:73-710
               
               
               Cow position:chr25:34769883-34769246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:638
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:76-704
               
               
               Cow position:chr25:33306055-33305433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:634
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 6

               
               
               Conread position:77-554
               
               
               Cow position:chr25:34433013-34433507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:306
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):190, 360

               
               
               Conread position:78-343
               
               
               Cow position:chr25:327001-327266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:78-678
               
               
               Cow position:chr25:326659-327265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 170

               
               
               Conread position:78-710
               
               
               Cow position:chr25:36801129-36801749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:636
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 41

               
               
               Conread position:81-718
               
               
               Cow position:chr25:34770128-34769491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:642
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 19

               
               
               Conread position:82-674
               
               
               Cow position:chr25:33144847-33145436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):304, 190

               
               
               Conread position:82-676
               
               
               Cow position:chr25:36801373-36801967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:82-710
               
               
               Cow position:chr25:326495-327129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:638
               
               
               Alignm identity:384
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):25, 21

               
               
               Conread position:82-710
               
               
               Cow position:chr25:33299065-33299693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):293, 300

               
               
               Conread position:83-371
               
               
               Cow position:chr25:18642172-18641881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):47, 64

               
               
               Conread position:83-459
               
               
               Cow position:chr25:346447-346823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):308, 294

               
               
               Conread position:83-709
               
               
               Cow position:chr25:34446937-34447563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):566, 556

               
               
               Conread position:83-710
               
               
               Cow position:chr25:36801218-36801833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):310, 118

               
               
               Conread position:83-713
               
               
               Cow position:chr25:34447021-34447651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):294, 299

               
               
               Conread position:84-580
               
               
               Cow position:chr25:34763246-34763739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:297
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):199, 0

               
               
               Conread position:84-704
               
               
               Cow position:chr25:33298479-33299099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 79

               
               
               Conread position:84-708
               
               
               Cow position:chr25:25652188-25652813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:374
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):295, 307

               
               
               Conread position:84-708
               
               
               Cow position:chr25:25652440-25653065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:373
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):285, 298

               
               
               Conread position:86-539
               
               
               Cow position:chr25:33305878-33305430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):305, 59

               
               
               Conread position:86-712
               
               
               Cow position:chr25:33298565-33299191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 23

               
               
               Conread position:86-712
               
               
               Cow position:chr25:36800633-36801259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):289, 300

               
               
               Conread position:87-594
               
               
               Cow position:chr25:22235831-22236339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:312
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):9, 294

               
               
               Conread position:90-458
               
               
               Cow position:chr25:25652950-25653318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):192, 198

               
               
               Conread position:90-709
               
               
               Cow position:chr25:33157467-33156848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 198

               
               
               Conread position:95-549
               
               
               Cow position:chr25:414763-414318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:276
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):254, 13

               
               
               Conread position:97-616
               
               
               Cow position:chr25:326342-326861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:326
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):91, 70

               
               
               Conread position:98-589
               
               
               Cow position:chr25:33127732-33128223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):279, 284

               
               
               Conread position:99-710
               
               
               Cow position:chr25:33306447-33305842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:374
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):133, 105

               
               
               Conread position:100-709
               
               
               Cow position:chr25:34713714-34714324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 45

               
               
               Conread position:107-674
               
               
               Cow position:chr25:33127656-33128224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:108-700
               
               
               Cow position:chr25:33157532-33156941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 12

               
               
               Conread position:108-712
               
               
               Cow position:chr25:33306274-33305678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 84

               
               
               Conread position:112-664
               
               
               Cow position:chr25:23420327-23420879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:553
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:129-710
               
               
               Cow position:chr25:34770163-34769582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):355, 350

               
               
               Conread position:130-688
               
               
               Cow position:chr25:34433486-34434037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:342
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):355, 121

               
               
               Conread position:131-710
               
               
               Cow position:chr25:36800594-36801173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 33

               
               
               Conread position:132-469
               
               
               Cow position:chr25:18642207-18641867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):141, 184

               
               
               Conread position:132-701
               
               
               Cow position:chr25:34763126-34763692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:332
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):326, 0

               
               
               Conread position:132-703
               
               
               Cow position:chr25:36801339-36801910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:136-598
               
               
               Cow position:chr25:34432988-34433468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:294
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):217, 349

               
               
               Conread position:141-703
               
               
               Cow position:chr25:36800520-36801082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 82

               
               
               Conread position:147-712
               
               
               Cow position:chr25:33305421-33304864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):380, 17

               
               
               Conread position:148-710
               
               
               Cow position:chr25:33298387-33298937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:564
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 60

               
               
               Conread position:149-710
               
               
               Cow position:chr25:36800444-36801005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:564
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 183

               
               
               Conread position:150-632
               
               
               Cow position:chr25:36844638-36844170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:292
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):242, 237

               
               
               Conread position:159-708
               
               
               Cow position:chr25:33298470-33299020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 230

               
               
               Conread position:162-457
               
               
               Cow position:chr25:34732614-34732319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):143, 135

               
               
               Conread position:167-514
               
               
               Cow position:chr25:346445-346794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):8, 132

               
               
               Conread position:169-496
               
               
               Cow position:chr25:34732103-34731776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:169-497
               
               
               Cow position:chr25:366726-367054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):17, 21

               
               
               Conread position:169-710
               
               
               Cow position:chr25:33144850-33145388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 115

               
               
               Conread position:171-654
               
               
               Cow position:chr25:22235831-22236315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:296
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):9, 212

               
               
               Conread position:180-703
               
               
               Cow position:chr25:23420311-23420834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:216-554
               
               
               Cow position:chr25:18642207-18641866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:215
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:231-559
               
               
               Cow position:chr25:366704-367032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):39, 43

               
               
               Conread position:231-710
               
               
               Cow position:chr25:33157494-33157015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 67

               
               
               Conread position:239-712
               
               
               Cow position:chr25:33298313-33298771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:305
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):268, 44

               
               
               Conread position:241-708
               
               
               Cow position:chr25:34446927-34447394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):243, 237

               
               
               Conread position:246-710
               
               
               Cow position:chr25:33157563-33157099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 42

               
               
               Conread position:247-607
               
               
               Cow position:chr25:346443-346803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:231
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:249-712
               
               
               Cow position:chr25:33144846-33145306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:293
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):128, 142

               
               
               Conread position:251-708
               
               
               Cow position:chr25:34762828-34763283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:274
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):30, 37

               
               
               Conread position:252-700
               
               
               Cow position:chr25:22235829-22236277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:284
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):63, 43

               
               
               Conread position:255-496
               
               
               Cow position:chr25:427332-427573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):219, 228

               
               
               Conread position:272-710
               
               
               Cow position:chr25:34446874-34447312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:277
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):46, 55

               
               
               Conread position:273-710
               
               
               Cow position:chr25:33127739-33128176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:299-631
               
               
               Cow position:chr25:18642208-18641873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):80, 88

               
               
               Conread position:299-712
               
               
               Cow position:chr25:34770161-34769748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 37

               
               
               Conread position:302-709
               
               
               Cow position:chr25:34433489-34433894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:260
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):11, 118

               
               
               Conread position:310-692
               
               
               Cow position:chr25:346422-346804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:315-665
               
               
               Cow position:chr25:366704-367054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):39, 43

               
               
               Conread position:320-709
               
               
               Cow position:chr25:33144833-33145220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):184, 178

               
               
               Conread position:330-709
               
               
               Cow position:chr25:34732614-34732234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):142, 135

               
               
               Conread position:337-712
               
               
               Cow position:chr25:33306461-33306095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):275, 124

               
               
               Conread position:351-712
               
               
               Cow position:chr25:22235844-22236205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):43, 33

               
               
               Conread position:403-615
               
               
               Cow position:chr25:34433003-34433215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):68, 77

               
               
               Conread position:413-709
               
               
               Cow position:chr25:34732615-34732318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):71, 66

               
               
               Conread position:415-703
               
               
               Cow position:chr25:346443-346731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):107, 112

               
               
               Conread position:420-703
               
               
               Cow position:chr25:366725-367008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):102, 107

               
               
               Conread position:442-703
               
               
               Cow position:chr25:414753-414497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:468-699
               
               
               Cow position:chr25:34432984-34433215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:10-657
               
               
               Cow position:chr27:21615929-21615285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:650
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):597, 371

               
               
               Conread position:76-622
               
               
               Cow position:chr27:21615947-21615400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:549
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):539, 383

               
               
               Conread position:81-709
               
               
               Cow position:chr27:21616116-21615482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:639
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 20

               
               
               Conread position:88-682
               
               
               Cow position:chr27:21616018-21615426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 37

               
               
               Conread position:114-720
               
               
               Cow position:chr27:21616166-21615553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 75

               
               
               Conread position:1-361
               
               
               Cow position:chr28:7758493-7758853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:236
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):304, 287

               
               
               Conread position:1-428
               
               
               Cow position:chr28:33210229-33210657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:271
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):333, 382

               
               
               Conread position:1-463
               
               
               Cow position:chr28:9253188-9253651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):439, 426

               
               
               Conread position:1-595
               
               
               Cow position:chr28:9290088-9290677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 120

               
               
               Conread position:2-580
               
               
               Cow position:chr28:7757754-7758332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 31

               
               
               Conread position:3-488
               
               
               Cow position:chr28:34696083-34696568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 44

               
               
               Conread position:3-492
               
               
               Cow position:chr28:9299224-9299710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:303
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):277, 284

               
               
               Conread position:3-571
               
               
               Cow position:chr28:34695999-34696567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 39

               
               
               Conread position:3-587
               
               
               Cow position:chr28:7758327-7758911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):468, 450

               
               
               Conread position:3-606
               
               
               Cow position:chr28:7810351-7810945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):278, 183

               
               
               Conread position:3-619
               
               
               Cow position:chr28:9298570-9299182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 97

               
               
               Conread position:7-512
               
               
               Cow position:chr28:9253110-9253615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):368, 375

               
               
               Conread position:7-576
               
               
               Cow position:chr28:34673362-34673931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:345
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):189, 208

               
               
               Conread position:7-664
               
               
               Cow position:chr28:7757675-7758332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:660
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):464, 480

               
               
               Conread position:7-703
               
               
               Cow position:chr28:7757927-7758607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):227, 231

               
               
               Conread position:7-712
               
               
               Cow position:chr28:9298741-9299429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:10-677
               
               
               Cow position:chr28:9252945-9253612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:669
               
               
               Alignm identity:452
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):365, 371

               
               
               Conread position:10-679
               
               
               Cow position:chr28:9299077-9299727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:675
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):365, 107

               
               
               Conread position:10-699
               
               
               Cow position:chr28:11334043-11333360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:693
               
               
               Alignm identity:414
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):42, 57

               
               
               Conread position:10-710
               
               
               Cow position:chr28:7757594-7758294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:468
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):279, 274

               
               
               Conread position:11-710
               
               
               Cow position:chr28:7757427-7758126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:701
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):605, 621

               
               
               Conread position:22-464
               
               
               Cow position:chr28:9290274-9290714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:278
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):40, 30

               
               
               Conread position:29-709
               
               
               Cow position:chr28:9298845-9299510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 24

               
               
               Conread position:65-679
               
               
               Cow position:chr28:9290069-9290677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:401
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 54

               
               
               Conread position:69-519
               
               
               Cow position:chr28:9290237-9290685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 0

               
               
               Conread position:76-660
               
               
               Cow position:chr28:11333893-11333315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):294, 306

               
               
               Conread position:76-703
               
               
               Cow position:chr28:7758164-7758775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):472, 150

               
               
               Conread position:78-683
               
               
               Cow position:chr28:7810342-7810938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 55

               
               
               Conread position:78-703
               
               
               Cow position:chr28:7757578-7758203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):297, 304

               
               
               Conread position:82-703
               
               
               Cow position:chr28:7757414-7758035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):290, 300

               
               
               Conread position:83-633
               
               
               Cow position:chr28:7758323-7758873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:554
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):473, 456

               
               
               Conread position:83-710
               
               
               Cow position:chr28:34695911-34696538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):285, 308

               
               
               Conread position:84-477
               
               
               Cow position:chr28:33210228-33210622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:254
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):199, 212

               
               
               Conread position:84-644
               
               
               Cow position:chr28:34695996-34696556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:561
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:85-710
               
               
               Cow position:chr28:34695829-34696454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 155

               
               
               Conread position:86-712
               
               
               Cow position:chr28:7757334-7757960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 56

               
               
               Conread position:108-716
               
               
               Cow position:chr28:7810288-7810886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):236, 0

               
               
               Conread position:124-666
               
               
               Cow position:chr28:34679602-34679070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:549
               
               
               Alignm identity:334
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):183, 53

               
               
               Conread position:131-703
               
               
               Cow position:chr28:9252982-9253554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:131-716
               
               
               Cow position:chr28:9252897-9253482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 583

               
               
               Conread position:132-703
               
               
               Cow position:chr28:9289720-9290283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):243, 149

               
               
               Conread position:133-706
               
               
               Cow position:chr28:9290053-9290620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 81

               
               
               Conread position:138-709
               
               
               Cow position:chr28:11334167-11333595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 150

               
               
               Conread position:141-712
               
               
               Cow position:chr28:9298208-9298774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:339
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):80, 33

               
               
               Conread position:146-554
               
               
               Cow position:chr28:34679498-34679098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:271
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):149, 114

               
               
               Conread position:157-710
               
               
               Cow position:chr28:9298556-9299105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:557
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 109

               
               
               Conread position:168-703
               
               
               Cow position:chr28:34673355-34673890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:334
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):54, 47

               
               
               Conread position:169-677
               
               
               Cow position:chr28:7758325-7758832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):447, 0

               
               
               Conread position:171-560
               
               
               Cow position:chr28:33210231-33210621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:254
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):195, 220

               
               
               Conread position:183-703
               
               
               Cow position:chr28:11334206-11333686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:315
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):186, 204

               
               
               Conread position:188-710
               
               
               Cow position:chr28:7810284-7810797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):244, 0

               
               
               Conread position:210-710
               
               
               Cow position:chr28:34679600-34679110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:323
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):99, 59

               
               
               Conread position:223-710
               
               
               Cow position:chr28:9252575-9253057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:299
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):152, 167

               
               
               Conread position:252-645
               
               
               Cow position:chr28:33210228-33210622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:252
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):55, 51

               
               
               Conread position:310-699
               
               
               Cow position:chr28:11334247-11333858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):227, 255

               
               
               Conread position:344-710
               
               
               Cow position:chr28:34673363-34673729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):35, 47

               
               
               Conread position:399-683
               
               
               Cow position:chr28:7810252-7810527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:420-700
               
               
               Cow position:chr28:33210228-33210508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:481-716
               
               
               Cow position:chr28:7810250-7810475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):135, 39

               
               
               Conread position:10-258
               
               
               Cow position:chr29:39627081-39626833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:65-592
               
               
               Cow position:chr29:39627359-39626835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):241, 108

               
               
               Conread position:65-653
               
               
               Cow position:chr29:39627443-39626858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 65

               
               
               Conread position:76-709
               
               
               Cow position:chr29:39627516-39626885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:636
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):400, 272

               
               
               Conread position:108-709
               
               
               Cow position:chr29:39627568-39626970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):316, 338

               
               
               Conread position:121-554
               
               
               Cow position:chr29:39627222-39626791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):267, 279

               
               
               Conread position:132-709
               
               
               Cow position:chr29:39627628-39627054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):399, 372

               
               
               Conread position:299-670
               
               
               Cow position:chr29:39627629-39627258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:227
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-677
               
               
               Cow position:chr3:62722240-62721564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:681
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 43

               
               
               Conread position:1-709
               
               
               Cow position:chr3:62742531-62743213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:469
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 134

               
               
               Conread position:2-710
               
               
               Cow position:chr3:68045603-68046311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:452
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):314, 302

               
               
               Conread position:3-600
               
               
               Cow position:chr3:68045772-68046367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):308, 313

               
               
               Conread position:3-625
               
               
               Cow position:chr3:62742864-62743466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 35

               
               
               Conread position:7-543
               
               
               Cow position:chr3:68027183-68027719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):334, 339

               
               
               Conread position:10-261
               
               
               Cow position:chr3:68027522-68027771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):30, 19

               
               
               Conread position:11-710
               
               
               Cow position:chr3:68027019-68027718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:701
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):361, 375

               
               
               Conread position:65-703
               
               
               Cow position:chr3:62742842-62743459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:642
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 157

               
               
               Conread position:67-709
               
               
               Cow position:chr3:62722340-62721699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:645
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):417, 16

               
               
               Conread position:73-385
               
               
               Cow position:chr3:62743165-62743476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):269, 282

               
               
               Conread position:73-391
               
               
               Cow position:chr3:68027417-68027735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:74-703
               
               
               Cow position:chr3:77351250-77350632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 69

               
               
               Conread position:74-709
               
               
               Cow position:chr3:68026998-68027634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:639
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 49

               
               
               Conread position:76-627
               
               
               Cow position:chr3:68045761-68046312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:554
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 127

               
               
               Conread position:81-591
               
               
               Cow position:chr3:77351076-77350576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:320
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):98, 39

               
               
               Conread position:82-529
               
               
               Cow position:chr3:62743095-62743534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):222, 22

               
               
               Conread position:82-710
               
               
               Cow position:chr3:62722243-62721615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:82-710
               
               
               Cow position:chr3:62742277-62742900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):609, 77

               
               
               Conread position:83-709
               
               
               Cow position:chr3:62742361-62742983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):528, 280

               
               
               Conread position:84-627
               
               
               Cow position:chr3:68027176-68027719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 148

               
               
               Conread position:106-658
               
               
               Cow position:chr3:20194744-20195296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:556
               
               
               Alignm identity:320
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):183, 177

               
               
               Conread position:132-710
               
               
               Cow position:chr3:62722361-62721783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 21

               
               
               Conread position:141-710
               
               
               Cow position:chr3:77351267-77350706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 27

               
               
               Conread position:212-717
               
               
               Cow position:chr3:68045561-68046065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:311
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):353, 338

               
               
               Conread position:216-717
               
               
               Cow position:chr3:62742242-62742739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 111

               
               
               Conread position:238-710
               
               
               Cow position:chr3:68026995-68027466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 6

               
               
               Conread position:241-501
               
               
               Cow position:chr3:16020467-16020214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:297-716
               
               
               Cow position:chr3:62722364-62721946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 24

               
               
               Conread position:326-625
               
               
               Cow position:chr3:16020466-16020178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:442-709
               
               
               Cow position:chr3:62722387-62722120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):69, 49

               
               
               Conread position:472-710
               
               
               Cow position:chr3:68026976-68027214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):15, 25

               
               
               Conread position:80-689
               
               
               Cow position:chr4:42314537-42313928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:378
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):49, 40

               
               
               Conread position:82-710
               
               
               Cow position:chr4:42314620-42313991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:641
               
               
               Alignm identity:396
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):69, 42

               
               
               Conread position:84-710
               
               
               Cow position:chr4:42315288-42314662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:634
               
               
               Alignm identity:383
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):64, 40

               
               
               Conread position:138-715
               
               
               Cow position:chr4:42315316-42314741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:351
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):251, 30

               
               
               Conread position:144-706
               
               
               Cow position:chr4:42314640-42314079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:340
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):88, 18

               
               
               Conread position:147-710
               
               
               Cow position:chr4:42315057-42314495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:352
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):66, 77

               
               
               Conread position:155-621
               
               
               Cow position:chr4:42314126-42313665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:299
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):77, 54

               
               
               Conread position:2-288
               
               
               Cow position:chr5:34281427-34281719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):42, 187

               
               
               Conread position:60-293
               
               
               Cow position:chr5:34281401-34281634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):63, 191

               
               
               Conread position:107-543
               
               
               Cow position:chr5:19249832-19249398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:265
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):127, 57

               
               
               Conread position:137-388
               
               
               Cow position:chr5:34281394-34281644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):80, 75

               
               
               Conread position:230-466
               
               
               Cow position:chr5:34281403-34281638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):52, 58

               
               
               Conread position:297-541
               
               
               Cow position:chr5:34281386-34281630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):88, 210

               
               
               Conread position:373-619
               
               
               Cow position:chr5:34281378-34281624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):91, 214

               
               
               Conread position:1-636
               
               
               Cow position:chr6:49340825-49341458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:638
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 28

               
               
               Conread position:3-431
               
               
               Cow position:chr6:49396548-49396976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:255
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-710
               
               
               Cow position:chr6:49340407-49341114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 26

               
               
               Conread position:3-710
               
               
               Cow position:chr6:49340659-49341366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 26

               
               
               Conread position:3-710
               
               
               Cow position:chr6:49340743-49341449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 30

               
               
               Conread position:6-709
               
               
               Cow position:chr6:49395885-49396583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):386, 338

               
               
               Conread position:7-710
               
               
               Cow position:chr6:49396138-49396835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 86

               
               
               Conread position:10-710
               
               
               Cow position:chr6:49340498-49341198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:469
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 23

               
               
               Conread position:13-708
               
               
               Cow position:chr6:49396306-49397001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):263, 257

               
               
               Conread position:15-700
               
               
               Cow position:chr6:49428831-49429514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:691
               
               
               Alignm identity:410
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):44, 32

               
               
               Conread position:25-710
               
               
               Cow position:chr6:49396234-49396919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):335, 329

               
               
               Conread position:25-716
               
               
               Cow position:chr6:49395988-49396672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:694
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 123

               
               
               Conread position:79-708
               
               
               Cow position:chr6:49395709-49396330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:637
               
               
               Alignm identity:391
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):98, 37

               
               
               Conread position:82-710
               
               
               Cow position:chr6:49362097-49362701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:366
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):59, 66

               
               
               Conread position:83-712
               
               
               Cow position:chr6:49340403-49341032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):296, 306

               
               
               Conread position:84-710
               
               
               Cow position:chr6:49428732-49429358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:375
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):49, 42

               
               
               Conread position:84-710
               
               
               Cow position:chr6:49428816-49429442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:374
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):293, 301

               
               
               Conread position:146-710
               
               
               Cow position:chr6:49340384-49340946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):231, 11

               
               
               Conread position:209-709
               
               
               Cow position:chr6:49340361-49340861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 178

               
               
               Conread position:1-472
               
               
               Cow position:chr7:18390331-18390802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):376, 381

               
               
               Conread position:1-509
               
               
               Cow position:chr7:3180370-3180877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 131

               
               
               Conread position:1-600
               
               
               Cow position:chr7:1014856-1015455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):470, 477

               
               
               Conread position:1-619
               
               
               Cow position:chr7:1439637-1440257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 124

               
               
               Conread position:1-666
               
               
               Cow position:chr7:11601102-11600437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:671
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 28

               
               
               Conread position:1-706
               
               
               Cow position:chr7:8324818-8325523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:449
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 123

               
               
               Conread position:1-709
               
               
               Cow position:chr7:1014274-1014976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:468
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):299, 290

               
               
               Conread position:1-709
               
               
               Cow position:chr7:8243387-8244092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 42

               
               
               Conread position:1-710
               
               
               Cow position:chr7:3180034-3180743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):470, 477

               
               
               Conread position:1-710
               
               
               Cow position:chr7:42879023-42878314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-592
               
               
               Cow position:chr7:42878853-42878263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):372, 396

               
               
               Conread position:3-703
               
               
               Cow position:chr7:1439557-1440257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 30

               
               
               Conread position:3-710
               
               
               Cow position:chr7:8243222-8243928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:432
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):220, 159

               
               
               Conread position:3-710
               
               
               Cow position:chr7:8278019-8278717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:439
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):66, 46

               
               
               Conread position:7-543
               
               
               Cow position:chr7:18390169-18390705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:538
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 43

               
               
               Conread position:7-584
               
               
               Cow position:chr7:11434809-11434239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:584
               
               
               Alignm identity:355
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):45, 57

               
               
               Conread position:7-586
               
               
               Cow position:chr7:11601012-11600432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 55

               
               
               Conread position:10-467
               
               
               Cow position:chr7:1439818-1440273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 19

               
               
               Conread position:10-666
               
               
               Cow position:chr7:42878930-42878274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:660
               
               
               Alignm identity:464
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 208

               
               
               Conread position:10-709
               
               
               Cow position:chr7:42879098-42878399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:700
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:10-710
               
               
               Cow position:chr7:11601177-11600477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:452
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 43

               
               
               Conread position:10-712
               
               
               Cow position:chr7:3180127-3180827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 48

               
               
               Conread position:13-708
               
               
               Cow position:chr7:1439483-1440178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 105

               
               
               Conread position:25-710
               
               
               Cow position:chr7:42879167-42878482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):350, 366

               
               
               Conread position:30-710
               
               
               Cow position:chr7:42879330-42878650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:682
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):345, 355

               
               
               Conread position:35-710
               
               
               Cow position:chr7:42879241-42878566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:677
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):340, 350

               
               
               Conread position:55-290
               
               
               Cow position:chr7:8325880-8326115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):153, 170

               
               
               Conread position:62-710
               
               
               Cow position:chr7:8324963-8325611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:663
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 65

               
               
               Conread position:65-703
               
               
               Cow position:chr7:8277913-8278549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:647
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 54

               
               
               Conread position:65-706
               
               
               Cow position:chr7:8277661-8278302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:648
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 82

               
               
               Conread position:65-709
               
               
               Cow position:chr7:1014668-1015312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:647
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 65

               
               
               Conread position:65-710
               
               
               Cow position:chr7:3179762-3180407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:649
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):312, 317

               
               
               Conread position:65-712
               
               
               Cow position:chr7:3179930-3180577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:652
               
               
               Alignm identity:453
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):236, 226

               
               
               Conread position:66-703
               
               
               Cow position:chr7:1014753-1015390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:640
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 138

               
               
               Conread position:67-543
               
               
               Cow position:chr7:8325640-8326116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 64

               
               
               Conread position:67-679
               
               
               Cow position:chr7:1014838-1015450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 149

               
               
               Conread position:67-710
               
               
               Cow position:chr7:8277747-8278390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:652
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 123

               
               
               Conread position:69-710
               
               
               Cow position:chr7:3179850-3180491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:642
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:73-709
               
               
               Cow position:chr7:3180022-3180658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:638
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 141

               
               
               Conread position:76-627
               
               
               Cow position:chr7:8278176-8278718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:556
               
               
               Alignm identity:349
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):62, 52

               
               
               Conread position:76-712
               
               
               Cow position:chr7:18390154-18390790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:639
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 114

               
               
               Conread position:76-718
               
               
               Cow position:chr7:8325229-8325871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:654
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 71

               
               
               Conread position:77-619
               
               
               Cow position:chr7:8243044-8243585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:551
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 147

               
               
               Conread position:78-706
               
               
               Cow position:chr7:8243213-8243840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:642
               
               
               Alignm identity:397
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):67, 49

               
               
               Conread position:78-710
               
               
               Cow position:chr7:1014267-1014893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):354, 0

               
               
               Conread position:82-709
               
               
               Cow position:chr7:11601189-11600562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:82-710
               
               
               Cow position:chr7:8277258-8277886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 44

               
               
               Conread position:82-710
               
               
               Cow position:chr7:18390076-18390704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 48

               
               
               Conread position:82-712
               
               
               Cow position:chr7:8277342-8277972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:641
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 45

               
               
               Conread position:83-477
               
               
               Cow position:chr7:1438332-1438726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:242
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:84-715
               
               
               Cow position:chr7:1014525-1015150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:84-715
               
               
               Cow position:chr7:8325489-8326120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:642
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 120

               
               
               Conread position:86-709
               
               
               Cow position:chr7:1438085-1438706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:374
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):299, 116

               
               
               Conread position:86-709
               
               
               Cow position:chr7:1439472-1440095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 116

               
               
               Conread position:86-718
               
               
               Cow position:chr7:8324735-8325367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:640
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 41

               
               
               Conread position:89-627
               
               
               Cow position:chr7:8242804-8243342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:322
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):58, 38

               
               
               Conread position:108-709
               
               
               Cow position:chr7:3179721-3180322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:128-709
               
               
               Cow position:chr7:1014647-1015228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:132-710
               
               
               Cow position:chr7:1014237-1014809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):336, 327

               
               
               Conread position:132-719
               
               
               Cow position:chr7:3179661-3180247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):575, 0

               
               
               Conread position:136-541
               
               
               Cow position:chr7:1439859-1440263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):256, 116

               
               
               Conread position:136-710
               
               
               Cow position:chr7:18390046-18390620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 61

               
               
               Conread position:142-715
               
               
               Cow position:chr7:1014079-1014652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:344
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):476, 492

               
               
               Conread position:145-709
               
               
               Cow position:chr7:1439447-1440011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):230, 139

               
               
               Conread position:146-710
               
               
               Cow position:chr7:11601209-11600645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 17

               
               
               Conread position:147-716
               
               
               Cow position:chr7:18389973-18390541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):565, 0

               
               
               Conread position:151-716
               
               
               Cow position:chr7:42879377-42878813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 109

               
               
               Conread position:162-718
               
               
               Cow position:chr7:11434822-11434274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:341
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):71, 61

               
               
               Conread position:164-700
               
               
               Cow position:chr7:8277256-8277792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:321
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):76, 42

               
               
               Conread position:171-710
               
               
               Cow position:chr7:42879442-42878902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 45

               
               
               Conread position:173-710
               
               
               Cow position:chr7:8242804-8243341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:335
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):68, 43

               
               
               Conread position:216-714
               
               
               Cow position:chr7:1014237-1014729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):255, 273

               
               
               Conread position:237-710
               
               
               Cow position:chr7:11601285-11600813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 58

               
               
               Conread position:251-710
               
               
               Cow position:chr7:42879447-42878986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 101

               
               
               Conread position:307-715
               
               
               Cow position:chr7:8242855-8243262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:263
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):160, 5

               
               
               Conread position:314-710
               
               
               Cow position:chr7:1439448-1439846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:270
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):65, 72

               
               
               Conread position:401-713
               
               
               Cow position:chr7:1439451-1439766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):241, 139

               
               
               Conread position:417-718
               
               
               Cow position:chr7:8277257-8277558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):223, 240

               
               
               Conread position:482-718
               
               
               Cow position:chr7:11601209-11600974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):232, 0

               
               
               Conread position:1-447
               
               
               Cow position:chr8:48406705-48406259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:284
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):197, 220

               
               
               Conread position:1-451
               
               
               Cow position:chr8:45201523-45201973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-587
               
               
               Cow position:chr8:55581075-55581661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):308, 283

               
               
               Conread position:1-647
               
               
               Cow position:chr8:45201607-45202243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:651
               
               
               Alignm identity:398
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):57, 63

               
               
               Conread position:1-709
               
               
               Cow position:chr8:46816634-46817343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:530
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):699, 0

               
               
               Conread position:1-710
               
               
               Cow position:chr8:46815962-46816671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 51

               
               
               Conread position:1-710
               
               
               Cow position:chr8:46816130-46816839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-619
               
               
               Cow position:chr8:45201355-45201973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 521

               
               
               Conread position:2-677
               
               
               Cow position:chr8:48406957-48406281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:684
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 44

               
               
               Conread position:3-662
               
               
               Cow position:chr8:45201441-45202093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:663
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 61

               
               
               Conread position:7-506
               
               
               Cow position:chr8:46816892-46817391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 70

               
               
               Conread position:7-703
               
               
               Cow position:chr8:48407203-48406507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:453
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):436, 459

               
               
               Conread position:7-703
               
               
               Cow position:chr8:48407287-48406591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):384, 368

               
               
               Conread position:7-709
               
               
               Cow position:chr8:46816472-46817174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 26

               
               
               Conread position:7-710
               
               
               Cow position:chr8:45201109-45201812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):282, 277

               
               
               Conread position:7-710
               
               
               Cow position:chr8:46816388-46817091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):385, 391

               
               
               Conread position:10-669
               
               
               Cow position:chr8:46816727-46817386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:666
               
               
               Alignm identity:469
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 23

               
               
               Conread position:10-710
               
               
               Cow position:chr8:46816223-46816923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:701
               
               
               Alignm identity:547
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:10-710
               
               
               Cow position:chr8:46816559-46817259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 42

               
               
               Conread position:11-703
               
               
               Cow position:chr8:45201281-45201973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:695
               
               
               Alignm identity:468
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 18

               
               
               Conread position:11-709
               
               
               Cow position:chr8:46815726-46816418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:551
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):243, 58

               
               
               Conread position:11-710
               
               
               Cow position:chr8:45201197-45201896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:466
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 22

               
               
               Conread position:11-710
               
               
               Cow position:chr8:46816056-46816755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 22

               
               
               Conread position:11-716
               
               
               Cow position:chr8:45201029-45201733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:473
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):701, 0

               
               
               Conread position:13-709
               
               
               Cow position:chr8:48407533-48406837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):465, 448

               
               
               Conread position:15-552
               
               
               Cow position:chr8:55581173-55581709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 14

               
               
               Conread position:22-690
               
               
               Cow position:chr8:48407020-48406352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:671
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):259, 276

               
               
               Conread position:22-709
               
               
               Cow position:chr8:46816319-46817006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:689
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):353, 359

               
               
               Conread position:60-709
               
               
               Cow position:chr8:45200826-45201475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:652
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 44

               
               
               Conread position:65-413
               
               
               Cow position:chr8:55581391-55581739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:230
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:65-509
               
               
               Cow position:chr8:55581307-55581751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:277
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):153, 144

               
               
               Conread position:65-683
               
               
               Cow position:chr8:48407397-48406779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):235, 226

               
               
               Conread position:65-703
               
               
               Cow position:chr8:48407565-48406927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:643
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):218, 223

               
               
               Conread position:65-712
               
               
               Cow position:chr8:55581055-55581702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:649
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):312, 321

               
               
               Conread position:73-497
               
               
               Cow position:chr8:6958007-6957586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:266
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):296, 205

               
               
               Conread position:73-590
               
               
               Cow position:chr8:46816874-46817391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 216

               
               
               Conread position:73-710
               
               
               Cow position:chr8:55580895-55581532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:640
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):488, 462

               
               
               Conread position:76-703
               
               
               Cow position:chr8:48407638-48407011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):287, 315

               
               
               Conread position:82-701
               
               
               Cow position:chr8:55580988-55581607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:83-709
               
               
               Cow position:chr8:55580736-55581363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 47

               
               
               Conread position:84-709
               
               
               Cow position:chr8:48407042-48406417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 137

               
               
               Conread position:84-710
               
               
               Cow position:chr8:45201018-45201644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 133

               
               
               Conread position:86-709
               
               
               Cow position:chr8:45200936-45201559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:625
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):531, 545

               
               
               Conread position:108-581
               
               
               Cow position:chr8:6958056-6957586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:298
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):190, 176

               
               
               Conread position:108-710
               
               
               Cow position:chr8:55580846-55581448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 32

               
               
               Conread position:109-710
               
               
               Cow position:chr8:46815899-46816503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 435

               
               
               Conread position:132-712
               
               
               Cow position:chr8:45200814-45201394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:584
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 200

               
               
               Conread position:140-709
               
               
               Cow position:chr8:48407658-48407089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):326, 340

               
               
               Conread position:189-619
               
               
               Cow position:chr8:6958059-6957630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:267
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):357, 272

               
               
               Conread position:230-677
               
               
               Cow position:chr8:46815526-46815963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:270
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):26, 52

               
               
               Conread position:238-710
               
               
               Cow position:chr8:55580808-55581280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:272-712
               
               
               Cow position:chr8:45200786-45201226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:286
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):206, 189

               
               
               Conread position:308-710
               
               
               Cow position:chr8:48407658-48407256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):168, 156

               
               
               Conread position:310-710
               
               
               Cow position:chr8:55580796-55581196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 38

               
               
               Conread position:357-682
               
               
               Cow position:chr8:6958059-6957735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):272, 0

               
               
               Conread position:437-716
               
               
               Cow position:chr8:6958063-6957784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):35, 41

               
               
               Conread position:1-271
               
               
               Cow position:chrX:25310311-25310581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):38, 32

               
               
               Conread position:1-519
               
               
               Cow position:chrX:29045175-29044657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):279, 288

               
               
               Conread position:1-710
               
               
               Cow position:chrX:25325082-25324373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 132

               
               
               Conread position:1-710
               
               
               Cow position:chrX:25325166-25324457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:545
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 28

               
               
               Conread position:1-710
               
               
               Cow position:chrX:25325250-25324541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):298, 283

               
               
               Conread position:1-710
               
               
               Cow position:chrX:25325418-25324709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 28

               
               
               Conread position:1-719
               
               
               Cow position:chrX:25325670-25324953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:672
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):711, 0

               
               
               Conread position:2-710
               
               
               Cow position:chrX:25325837-25325129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 41

               
               
               Conread position:3-488
               
               
               Cow position:chrX:25324660-25324179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):413, 0

               
               
               Conread position:3-678
               
               
               Cow position:chrX:25309893-25310568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:458
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 26

               
               
               Conread position:7-597
               
               
               Cow position:chrX:25309981-25310571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 207

               
               
               Conread position:7-685
               
               
               Cow position:chrX:25324908-25324230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:679
               
               
               Alignm identity:458
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:10-440
               
               
               Cow position:chrX:29045082-29044652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:10-596
               
               
               Cow position:chrX:29045250-29044663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 99

               
               
               Conread position:10-703
               
               
               Cow position:chrX:25325325-25324632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:694
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:11-683
               
               
               Cow position:chrX:29045333-29044661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:676
               
               
               Alignm identity:470
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 66

               
               
               Conread position:11-712
               
               
               Cow position:chrX:25309733-25310434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:471
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 24

               
               
               Conread position:13-541
               
               
               Cow position:chrX:12627535-12628062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:537
               
               
               Alignm identity:321
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):218, 119

               
               
               Conread position:22-709
               
               
               Cow position:chrX:29045721-29045055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:691
               
               
               Alignm identity:449
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):276, 262

               
               
               Conread position:26-709
               
               
               Cow position:chrX:25325729-25325045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:473
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):443, 435

               
               
               Conread position:65-436
               
               
               Cow position:chrX:25310207-25310578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 151

               
               
               Conread position:65-715
               
               
               Cow position:chrX:29045762-29045134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:652
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):326, 321

               
               
               Conread position:67-710
               
               
               Cow position:chrX:12627338-12627979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:651
               
               
               Alignm identity:395
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):72, 57

               
               
               Conread position:67-712
               
               
               Cow position:chrX:12627422-12628066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:654
               
               
               Alignm identity:387
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):336, 77

               
               
               Conread position:73-709
               
               
               Cow position:chrX:25325430-25324794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:638
               
               
               Alignm identity:452
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):320, 325

               
               
               Conread position:73-710
               
               
               Cow position:chrX:25325514-25324877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:639
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):304, 312

               
               
               Conread position:76-362
               
               
               Cow position:chrX:25310302-25310587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):281, 0

               
               
               Conread position:76-710
               
               
               Cow position:chrX:25324923-25324289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:78-703
               
               
               Cow position:chrX:25309884-25310509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 227

               
               
               Conread position:78-715
               
               
               Cow position:chrX:25309716-25310352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:643
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 42

               
               
               Conread position:82-448
               
               
               Cow position:chrX:14181308-14180942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):150, 138

               
               
               Conread position:82-538
               
               
               Cow position:chrX:29045829-29045373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 51

               
               
               Conread position:82-619
               
               
               Cow position:chrX:12627520-12628056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:545
               
               
               Alignm identity:334
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):57, 45

               
               
               Conread position:84-523
               
               
               Cow position:chrX:25310142-25310581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 119

               
               
               Conread position:84-542
               
               
               Cow position:chrX:13826696-13826238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:266
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):148, 138

               
               
               Conread position:84-710
               
               
               Cow position:chrX:13826948-13826322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:374
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):207, 200

               
               
               Conread position:110-715
               
               
               Cow position:chrX:29045318-29044714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 174

               
               
               Conread position:138-715
               
               
               Cow position:chrX:12627325-12627900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:584
               
               
               Alignm identity:350
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):142, 149

               
               
               Conread position:142-715
               
               
               Cow position:chrX:29045367-29044798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:144-710
               
               
               Cow position:chrX:25309700-25310264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):397, 32

               
               
               Conread position:148-710
               
               
               Cow position:chrX:25325859-25325297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 16

               
               
               Conread position:153-620
               
               
               Cow position:chrX:29045842-29045375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 232

               
               
               Conread position:198-703
               
               
               Cow position:chrX:25309668-25310173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 22

               
               
               Conread position:231-532
               
               
               Cow position:chrX:14181243-14180942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):85, 80

               
               
               Conread position:321-719
               
               
               Cow position:chrX:29045842-29045444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0
Conread position:	1-710
Cow position:	chr10:8996761-8996052 (view UCSC Genome Browser custom track)
Alignm length:	711
Alignm identity:	486
Alignm E-value:	0
Alignm gaps (pig, cow):	567, 561
Conread position:	3-501
Cow position:	chr10:9031418-9031896 (view UCSC Genome Browser custom track)
Alignm length:	500
Alignm identity:	286
Alignm E-value:	5e-33
Alignm gaps (pig, cow):	414, 248
Conread position:	3-627
Cow position:	chr10:9010487-9009863 (view UCSC Genome Browser custom track)
Alignm length:	628
Alignm identity:	398
Alignm E-value:	0
Alignm gaps (pig, cow):	74, 48
Conread position:	10-588
Cow position:	chr10:8996584-8996006 (view UCSC Genome Browser custom track)
Alignm length:	579
Alignm identity:	378
Alignm E-value:	0
Alignm gaps (pig, cow):	0, 0
Conread position:	13-417
Cow position:	chr10:9031260-9031664 (view UCSC Genome Browser custom track)
Alignm length:	405
Alignm identity:	249
Alignm E-value:	0
Alignm gaps (pig, cow):	0, 0
Conread position:	14-677
Cow position:	chr10:8996664-8996001 (view UCSC Genome Browser custom track)
Alignm length:	664
Alignm identity:	437
Alignm E-value:	0
Alignm gaps (pig, cow):	0, 0
Conread position:	15-534
Cow position:	chr10:21939147-21938631 (view UCSC Genome Browser custom track)
Alignm length:	523
Alignm identity:	328
Alignm E-value:	1.4013e-45
Alignm gaps (pig, cow):	114, 110
Conread position:	15-710
Cow position:	chr10:8996831-8996136 (view UCSC Genome Browser custom track)
Alignm length:	697
Alignm identity:	458
Alignm E-value:	0
Alignm gaps (pig, cow):	637, 632
Conread position:	60-572
Cow position:	chr10:9010346-9009834 (view UCSC Genome Browser custom track)
Alignm length:	514
Alignm identity:	334
Alignm E-value:	0
Alignm gaps (pig, cow):	325, 312
Conread position:	65-710
Cow position:	chr10:9010509-9009864 (view UCSC Genome Browser custom track)
Alignm length:	648
Alignm identity:	420
Alignm E-value:	0
Alignm gaps (pig, cow):	312, 326
Conread position:	76-616
Cow position:	chr10:21939170-21938633 (view UCSC Genome Browser custom track)
Alignm length:	544
Alignm identity:	344
Alignm E-value:	0
Alignm gaps (pig, cow):	32, 27
Conread position:	79-716
Cow position:	chr10:8996851-8996215 (view UCSC Genome Browser custom track)
Alignm length:	640
Alignm identity:	432
Alignm E-value:	0
Alignm gaps (pig, cow):	399, 386
Conread position:	80-710
Cow position:	chr10:9010576-9009948 (view UCSC Genome Browser custom track)
Alignm length:	632
Alignm identity:	401
Alignm E-value:	0
Alignm gaps (pig, cow):	136, 16
Conread position:	85-501
Cow position:	chr10:9031248-9031664 (view UCSC Genome Browser custom track)
Alignm length:	418
Alignm identity:	257
Alignm E-value:	0
Alignm gaps (pig, cow):	51, 63
Conread position:	106-714
Cow position:	chr10:21939378-21938784 (view UCSC Genome Browser custom track)
Alignm length:	610
Alignm identity:	380
Alignm E-value:	0
Alignm gaps (pig, cow):	269, 154
Conread position:	107-707
Cow position:	chr10:21939223-21938626 (view UCSC Genome Browser custom track)
Alignm length:	603
Alignm identity:	378
Alignm E-value:	0
Alignm gaps (pig, cow):	208, 197
Conread position:	132-709
Cow position:	chr10:8996882-8996305 (view UCSC Genome Browser custom track)
Alignm length:	578
Alignm identity:	393
Alignm E-value:	0
Alignm gaps (pig, cow):	0, 0
Conread position:	149-585
Cow position:	chr10:9031228-9031664 (view UCSC Genome Browser custom track)
Alignm length:	439
Alignm identity:	280
Alignm E-value:	0
Alignm gaps (pig, cow):	60, 68
Conread position:	151-710
Cow position:	chr10:9010591-9010032 (view UCSC Genome Browser custom track)
Alignm length:	562
Alignm identity:	352
Alignm E-value:	0
Alignm gaps (pig, cow):	224, 234
Conread position:	191-489
Cow position:	chr10:9031671-9031980 (view UCSC Genome Browser custom track)
Alignm length:	310
Alignm identity:	202
Alignm E-value:	3e-27
Alignm gaps (pig, cow):	143, 0