Cow genome map

Conread name: Ss1.1-Ova1-OVRM10119A10.5

Conread position: 371-630
Cow position: chr10:8996731-8996472 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 165
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 39, 49

Conread position: 505-672
Cow position: chr11:74554352-74554185 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 122
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 146, 138

Conread position: 459-672
Cow position: chr14:25794725-25794512 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 141
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 32, 5

Conread position: 505-668
Cow position: chr16:14627166-14627003 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 123
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 505-672
Cow position: chr16:14626998-14626831 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 116
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 478-669
Cow position: chr17:22552209-22552017 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 137
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 14, 0

Conread position: 447-669
Cow position: chr18:52448058-52448280 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 149
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 447-672
Cow position: chr18:52447638-52447863 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 150
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 185, 192

Conread position: 447-672
Cow position: chr18:52447890-52448115 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 153
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 175, 190

Conread position: 450-672
Cow position: chr18:52447389-52447611 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 150
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 34, 41

Conread position: 460-630
Cow position: chr18:41197698-41197868 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 126
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 32, 10

Conread position: 460-672
Cow position: chr18:44397896-44397684 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 141
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 31, 17

Conread position: 477-672
Cow position: chr18:43174713-43174517 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 134
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 14, 0

Conread position: 477-672
Cow position: chr18:44184494-44184299 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 130
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 490-630
Cow position: chr18:41198316-41198456 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 103
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 490-669
Cow position: chr18:42744480-42744301 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 122
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 490-669
Cow position: chr18:42744648-42744469 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 125
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 490-669
Cow position: chr18:43093433-43093254 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 124
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 490-672
Cow position: chr18:42744060-42743878 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 126
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 492-630
Cow position: chr18:41198570-41198708 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 102
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 493-672
Cow position: chr18:41197563-41197742 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 122
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 502-668
Cow position: chr18:1418337-1418501 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 121
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 14, 0

Conread position: 503-672
Cow position: chr18:43048644-43048477 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 122
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 11, 0

Conread position: 504-629
Cow position: chr18:40306672-40306797 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 97
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 504-669
Cow position: chr18:42744130-42743965 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 119
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 140, 152

Conread position: 505-630
Cow position: chr18:44398271-44398146 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 97
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 505-668
Cow position: chr18:42837768-42837605 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 115
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 505-668
Cow position: chr18:53560430-53560593 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 119
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 53, 58

Conread position: 505-668
Cow position: chr18:54967287-54967450 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 114
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 505-669
Cow position: chr18:42675069-42674905 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 118
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 505-669
Cow position: chr18:42744381-42744217 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 122
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 505-669
Cow position: chr18:43022147-43021983 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 115
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 505-672
Cow position: chr18:14453120-14452953 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 116
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 505-672
Cow position: chr18:41197659-41197826 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 116
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 505-672
Cow position: chr18:41198247-41198414 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 119
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 144, 150

Conread position: 505-672
Cow position: chr18:42827740-42827907 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 120
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 505-672
Cow position: chr18:42959636-42959469 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 116
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 505-672
Cow position: chr18:43175020-43174853 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 119
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 144, 150

Conread position: 505-672
Cow position: chr18:43175104-43174937 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 119
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 505-672
Cow position: chr18:51812716-51812549 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 116
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 505-672
Cow position: chr18:52447864-52448031 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 116
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 505-672
Cow position: chr18:52448032-52448199 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 117
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 507-672
Cow position: chr18:40324546-40324381 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 117
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 509-668
Cow position: chr18:43174848-43174689 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 115
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 66, 73

Conread position: 523-669
Cow position: chr18:41949330-41949184 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 106
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 531-672
Cow position: chr18:40324186-40324045 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 103
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 85-672
Cow position: chr19:14939556-14940155 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 321

Conread position: 450-672
Cow position: chr19:14940437-14940659 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 146
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 459-672
Cow position: chr19:14940194-14940407 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 143
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 476-668
Cow position: chr19:14959110-14958917 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 133
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 15, 0

Conread position: 478-630
Cow position: chr19:20678259-20678412 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 114
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 17, 67

Conread position: 493-668
Cow position: chr19:14940144-14940319 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 124
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 505-668
Cow position: chr19:23614860-23615023 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 119
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 150, 138

Conread position: 505-669
Cow position: chr19:20635297-20635133 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 117
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 46, 51

Conread position: 505-672
Cow position: chr19:14960057-14959890 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 118
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 507-672
Cow position: chr19:23613434-23613599 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 115
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 490-668
Cow position: chr22:12399609-12399431 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 125
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 503-672
Cow position: chr22:12385418-12385249 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 118
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 505-672
Cow position: chr22:12475635-12475468 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 116
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 505-672
Cow position: chr22:12499624-12499791 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 117
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 477-668
Cow position: chr23:24626277-24626469 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 131
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 29, 0

Conread position: 503-664
Cow position: chr23:24560556-24560397 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 116
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 11, 0

Conread position: 504-668
Cow position: chr23:24626559-24626721 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 118
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 10, 0

Conread position: 505-647
Cow position: chr23:24639634-24639776 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 103
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 505-668
Cow position: chr23:24547164-24547001 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 115
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 505-668
Cow position: chr23:24560304-24560141 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 116
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 505-668
Cow position: chr23:24654115-24654278 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 115
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 505-669
Cow position: chr23:24626390-24626554 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 116
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 506-669
Cow position: chr23:24536046-24535883 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 115
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 322-669
Cow position: chr24:17077941-17077596 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 213
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 169, 15

Conread position: 490-668
Cow position: chr24:17070525-17070703 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 122
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 505-630
Cow position: chr24:17035961-17035836 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 97
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 505-668
Cow position: chr24:17077844-17077681 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 117
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 450-668
Cow position: chr25:33299597-33299815 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 148
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 41, 20

Conread position: 500-668
Cow position: chr25:33157481-33157313 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 121
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 41, 48

Conread position: 505-668
Cow position: chr25:33127883-33128046 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 118
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 505-672
Cow position: chr25:23420380-23420547 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 118
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 510-668
Cow position: chr25:34731933-34731776 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 112
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 7, 0

Conread position: 455-647
Cow position: chr28:7810294-7810487 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 139
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 6, 24

Conread position: 502-669
Cow position: chr28:7757664-7757829 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 122
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 12, 0

Conread position: 505-662
Cow position: chr28:7757413-7757570 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 113
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 505-672
Cow position: chr29:39627094-39626927 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 120
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 448-668
Cow position: chr3:62722385-62722165 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 145
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 64, 29

Conread position: 493-672
Cow position: chr3:62722256-62722077 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 125
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 443-669
Cow position: chr7:42878669-42878443 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 148
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 48, 21

Conread position: 490-672
Cow position: chr7:3180603-3180785 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 124
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 505-630
Cow position: chr7:3180282-3180407 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 95
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 505-668
Cow position: chr7:1015020-1015183 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 117
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 505-669
Cow position: chr7:3180534-3180698 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 116
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 505-672
Cow position: chr7:3180030-3180197 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 117
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 452-661
Cow position: chr8:45201717-45201927 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 144
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 11, 27

Conread position: 460-668
Cow position: chr8:45201138-45201346 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 147
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 5, 11

Conread position: 490-668
Cow position: chr8:45201504-45201682 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 122
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 490-668
Cow position: chr8:46816615-46816793 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 122
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 490-672
Cow position: chr8:55581476-55581658 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 124
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 501-668
Cow position: chr8:45201013-45201178 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 119
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 13, 0

Conread position: 505-668
Cow position: chr8:46816126-46816289 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 116
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 505-672
Cow position: chr8:6957999-6957832 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 119
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 490-668
Cow position: chrX:29044858-29044680 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 121
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 490-669
Cow position: chrX:29045026-29044847 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 126
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 505-668
Cow position: chrX:25325422-25325259 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 114
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 505-669
Cow position: chrX:25325002-25324838 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 114
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 505-669
Cow position: chrX:25325254-25325090 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 114
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0