Non-Coding RNA Search

Cow genome map


           Conread name:
           Ss1.1-Ova1-OVRM10181H07.5
        

               Conread position:
               152-668
               

               Cow position:
               chr10:41878415-41878938 (view UCSC Genome Browser custom track)
               

               Alignm length:
               530
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 8
               

               Conread position:
               160-364
               

               Cow position:
               chr10:47908432-47908644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               160-668
               

               Cow position:
               chr10:1378994-1379511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               526
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 24
               

               Conread position:
               169-380
               

               Cow position:
               chr10:19706131-19705902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               159
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               169-402
               

               Cow position:
               chr10:39444780-39444532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               177
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               43, 24
               

               Conread position:
               169-668
               

               Cow position:
               chr10:57988486-57987996 (view UCSC Genome Browser custom track)
               

               Alignm length:
               512
               

               Alignm identity:
               338
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               60, 14
               

               Conread position:
               169-670
               

               Cow position:
               chr10:21079114-21079638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               538
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 197
               

               Conread position:
               169-670
               

               Cow position:
               chr10:38451039-38451549 (view UCSC Genome Browser custom track)
               

               Alignm length:
               523
               

               Alignm identity:
               327
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               60, 139
               

               Conread position:
               170-367
               

               Cow position:
               chr10:39181305-39181507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               139
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               170-384
               

               Cow position:
               chr10:44708102-44707888 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               154
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               26, 17
               

               Conread position:
               170-403
               

               Cow position:
               chr10:57555826-57555587 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               167
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               50, 229
               

               Conread position:
               170-414
               

               Cow position:
               chr10:62407268-62407023 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               164
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               15, 71
               

               Conread position:
               170-509
               

               Cow position:
               chr10:10583631-10583972 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               225
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               17, 13
               

               Conread position:
               170-587
               

               Cow position:
               chr10:14805355-14805773 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               269
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               50, 229
               

               Conread position:
               170-634
               

               Cow position:
               chr10:19494780-19494305 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               307
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               50, 288
               

               Conread position:
               170-661
               

               Cow position:
               chr10:30683983-30683483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               506
               

               Alignm identity:
               322
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               17, 153
               

               Conread position:
               170-665
               

               Cow position:
               chr10:10172244-10172753 (view UCSC Genome Browser custom track)
               

               Alignm length:
               513
               

               Alignm identity:
               324
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               62, 241
               

               Conread position:
               170-665
               

               Cow position:
               chr10:22346468-22346970 (view UCSC Genome Browser custom track)
               

               Alignm length:
               511
               

               Alignm identity:
               324
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               17, 170
               

               Conread position:
               170-665
               

               Cow position:
               chr10:37771394-37771897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               516
               

               Alignm identity:
               325
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               39, 17
               

               Conread position:
               170-665
               

               Cow position:
               chr10:39439661-39440163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               507
               

               Alignm identity:
               320
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               59, 249
               

               Conread position:
               170-665
               

               Cow position:
               chr10:41158922-41159425 (view UCSC Genome Browser custom track)
               

               Alignm length:
               507
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 249
               

               Conread position:
               170-668
               

               Cow position:
               chr10:7896973-7896466 (view UCSC Genome Browser custom track)
               

               Alignm length:
               511
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 324
               

               Conread position:
               170-668
               

               Cow position:
               chr10:21488467-21488959 (view UCSC Genome Browser custom track)
               

               Alignm length:
               505
               

               Alignm identity:
               326
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               26, 13
               

               Conread position:
               170-668
               

               Cow position:
               chr10:21739246-21738740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               512
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 169
               

               Conread position:
               170-668
               

               Cow position:
               chr10:25651920-25651404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               521
               

               Alignm identity:
               334
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               50, 292
               

               Conread position:
               170-668
               

               Cow position:
               chr10:39814889-39814385 (view UCSC Genome Browser custom track)
               

               Alignm length:
               510
               

               Alignm identity:
               327
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               50, 177
               

               Conread position:
               170-668
               

               Cow position:
               chr10:55094775-55095279 (view UCSC Genome Browser custom track)
               

               Alignm length:
               513
               

               Alignm identity:
               329
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               50, 164
               

               Conread position:
               171-668
               

               Cow position:
               chr10:29845144-29844647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               504
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 14
               

               Conread position:
               172-414
               

               Cow position:
               chr10:32317284-32317531 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               168
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               56, 6
               

               Conread position:
               172-665
               

               Cow position:
               chr10:33870796-33871298 (view UCSC Genome Browser custom track)
               

               Alignm length:
               507
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 381
               

               Conread position:
               173-665
               

               Cow position:
               chr10:28255889-28255397 (view UCSC Genome Browser custom track)
               

               Alignm length:
               502
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 31
               

               Conread position:
               173-668
               

               Cow position:
               chr10:32702259-32702771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               517
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 170
               

               Conread position:
               176-384
               

               Cow position:
               chr10:1665053-1664845 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               115
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               176-668
               

               Cow position:
               chr10:19143101-19142602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               507
               

               Alignm identity:
               326
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               53, 158
               

               Conread position:
               177-661
               

               Cow position:
               chr10:41634909-41635392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               506
               

               Alignm identity:
               340
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               58, 98
               

               Conread position:
               177-668
               

               Cow position:
               chr10:22102746-22103246 (view UCSC Genome Browser custom track)
               

               Alignm length:
               510
               

               Alignm identity:
               325
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               58, 38
               

               Conread position:
               177-670
               

               Cow position:
               chr10:38849782-38850279 (view UCSC Genome Browser custom track)
               

               Alignm length:
               505
               

               Alignm identity:
               326
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               53, 20
               

               Conread position:
               179-430
               

               Cow position:
               chr10:14853370-14853627 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               183
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               47, 9
               

               Conread position:
               179-668
               

               Cow position:
               chr10:42114038-42114521 (view UCSC Genome Browser custom track)
               

               Alignm length:
               498
               

               Alignm identity:
               313
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               50, 155
               

               Conread position:
               180-668
               

               Cow position:
               chr10:29722540-29722043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               508
               

               Alignm identity:
               330
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               55, 115
               

               Conread position:
               182-668
               

               Cow position:
               chr10:8325590-8325094 (view UCSC Genome Browser custom track)
               

               Alignm length:
               511
               

               Alignm identity:
               334
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               24, 47
               

               Conread position:
               183-378
               

               Cow position:
               chr10:22575635-22575439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               139
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               23, 83
               

               Conread position:
               183-402
               

               Cow position:
               chr10:20369586-20369363 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               46, 5
               

               Conread position:
               183-403
               

               Cow position:
               chr10:19841192-19841427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               169
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               26, 225
               

               Conread position:
               183-503
               

               Cow position:
               chr10:38722612-38722925 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               226
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               52, 24
               

               Conread position:
               183-617
               

               Cow position:
               chr10:29109473-29109023 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               293
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               29, 144
               

               Conread position:
               183-637
               

               Cow position:
               chr10:16478259-16478717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               307
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               53, 119
               

               Conread position:
               183-668
               

               Cow position:
               chr10:23409726-23409234 (view UCSC Genome Browser custom track)
               

               Alignm length:
               499
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 89
               

               Conread position:
               183-668
               

               Cow position:
               chr10:38343844-38343360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               494
               

               Alignm identity:
               306
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               13, 89
               

               Conread position:
               183-668
               

               Cow position:
               chr10:46192659-46193168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               518
               

               Alignm identity:
               342
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               56, 10
               

               Conread position:
               183-668
               

               Cow position:
               chr10:57555822-57555325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               513
               

               Alignm identity:
               326
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               26, 85
               

               Conread position:
               183-669
               

               Cow position:
               chr10:29101212-29100709 (view UCSC Genome Browser custom track)
               

               Alignm length:
               508
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 337
               

               Conread position:
               183-670
               

               Cow position:
               chr10:22908950-22908453 (view UCSC Genome Browser custom track)
               

               Alignm length:
               510
               

               Alignm identity:
               329
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               25, 5
               

               Conread position:
               184-657
               

               Cow position:
               chr10:39877904-39877427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               486
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 180
               

               Conread position:
               185-378
               

               Cow position:
               chr10:24976287-24976086 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               50, 8
               

               Conread position:
               185-403
               

               Cow position:
               chr10:11822268-11822496 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               171
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               185-649
               

               Cow position:
               chr10:41387464-41386989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               298
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               44, 10
               

               Conread position:
               185-668
               

               Cow position:
               chr10:39039786-39039302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               494
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 10
               

               Conread position:
               188-668
               

               Cow position:
               chr10:41568619-41569116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               502
               

               Alignm identity:
               326
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               21, 277
               

               Conread position:
               189-670
               

               Cow position:
               chr10:29011145-29010673 (view UCSC Genome Browser custom track)
               

               Alignm length:
               494
               

               Alignm identity:
               319
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               46, 75
               

               Conread position:
               190-380
               

               Cow position:
               chr10:40418663-40418855 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               191-378
               

               Cow position:
               chr10:24310865-24310668 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               19, 74
               

               Conread position:
               191-402
               

               Cow position:
               chr10:58598038-58598259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               41, 119
               

               Conread position:
               191-665
               

               Cow position:
               chr10:46183969-46184419 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 79
               

               Conread position:
               200-665
               

               Cow position:
               chr10:40641487-40641954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               316
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               19, 158
               

               Conread position:
               204-402
               

               Cow position:
               chr10:47788220-47788421 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               140
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               204-423
               

               Cow position:
               chr10:32558896-32559112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               153
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               205, 28
               

               Conread position:
               204-665
               

               Cow position:
               chr10:54930665-54930213 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               303
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               186, 28
               

               Conread position:
               205-670
               

               Cow position:
               chr10:48397566-48397101 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               310
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               21, 161
               

               Conread position:
               209-668
               

               Cow position:
               chr10:22583494-22583039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               313
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               32, 6
               

               Conread position:
               210-668
               

               Cow position:
               chr10:34666186-34665725 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               308
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               33, 22
               

               Conread position:
               231-402
               

               Cow position:
               chr10:31539707-31539878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               123
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               153, 135
               

               Conread position:
               232-670
               

               Cow position:
               chr10:58096473-58096037 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               294
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               156, 27
               

               Conread position:
               234-414
               

               Cow position:
               chr10:29732319-29732498 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               127
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               152, 140
               

               Conread position:
               234-668
               

               Cow position:
               chr10:41151156-41150715 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               291
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               156, 117
               

               Conread position:
               236-364
               

               Cow position:
               chr10:22343057-22343185 (view UCSC Genome Browser custom track)
               

               Alignm length:
               129
               

               Alignm identity:
               102
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               237-492
               

               Cow position:
               chr10:45310961-45310711 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               80, 23
               

               Conread position:
               245-665
               

               Cow position:
               chr10:24124469-24124051 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               275
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               66, 118
               

               Conread position:
               249-645
               

               Cow position:
               chr10:6258898-6258500 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               272
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               138, 30
               

               Conread position:
               277-668
               

               Cow position:
               chr10:6556154-6556547 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               261
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               103, 117
               

               Conread position:
               294-668
               

               Cow position:
               chr10:42642232-42642605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               257
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               95, 28
               

               Conread position:
               303-668
               

               Cow position:
               chr10:39209399-39209764 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               238
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               82, 110
               

               Conread position:
               304-670
               

               Cow position:
               chr10:36468541-36468165 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 27
               

               Conread position:
               404-665
               

               Cow position:
               chr10:57525608-57525332 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               100, 17
               

               Conread position:
               432-663
               

               Cow position:
               chr10:18039384-18039636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               188
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               432-665
               

               Cow position:
               chr10:50136242-50136477 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               15, 77
               

               Conread position:
               433-668
               

               Cow position:
               chr10:2119256-2119017 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               174
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               52, 74
               

               Conread position:
               434-665
               

               Cow position:
               chr10:14853607-14853850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               72, 134
               

               Conread position:
               446-668
               

               Cow position:
               chr10:20369345-20369124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               164
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               141, 57
               

               Conread position:
               446-668
               

               Cow position:
               chr10:38544131-38543901 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               166
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               52, 96
               

               Conread position:
               483-662
               

               Cow position:
               chr10:62406943-62406759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               499-665
               

               Cow position:
               chr10:17957913-17958084 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               127
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               506-670
               

               Cow position:
               chr10:20374565-20374399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               127
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               16, 113
               

               Conread position:
               508-659
               

               Cow position:
               chr10:8340810-8340965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               114
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               508-663
               

               Cow position:
               chr10:31045684-31045524 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               123
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               508-665
               

               Cow position:
               chr10:7280184-7280028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               121
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               85, 0
               

               Conread position:
               508-665
               

               Cow position:
               chr10:22249965-22249804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               122
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               508-665
               

               Cow position:
               chr10:24310336-24310173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               123
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               119, 0
               

               Conread position:
               508-665
               

               Cow position:
               chr10:48375602-48375441 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               122
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               508-668
               

               Cow position:
               chr10:10583992-10584151 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               117
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               147, 0
               

               Conread position:
               508-668
               

               Cow position:
               chr10:11822732-11822893 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               128
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               72, 0
               

               Conread position:
               508-668
               

               Cow position:
               chr10:22343315-22343478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               124
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               24, 31
               

               Conread position:
               508-668
               

               Cow position:
               chr10:28032077-28031912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               123
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               508-668
               

               Cow position:
               chr10:38842012-38842173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               120
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               508-668
               

               Cow position:
               chr10:51951253-51951085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               125
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               508-670
               

               Cow position:
               chr10:24975992-24975827 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               132
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               79, 59
               

               Conread position:
               508-670
               

               Cow position:
               chr10:31525579-31525744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               124
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               77, 93
               

               Conread position:
               508-670
               

               Cow position:
               chr10:34623690-34623526 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               122
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               31, 24
               

               Conread position:
               511-668
               

               Cow position:
               chr10:19705773-19705617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               113
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               511-670
               

               Cow position:
               chr10:54127405-54127566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               123
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               76, 10
               

               Conread position:
               537-668
               

               Cow position:
               chr10:13851016-13851153 (view UCSC Genome Browser custom track)
               

               Alignm length:
               138
               

               Alignm identity:
               106
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               152-668
               

               Cow position:
               chr11:13064855-13064324 (view UCSC Genome Browser custom track)
               

               Alignm length:
               550
               

               Alignm identity:
               387
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 32
               

               Conread position:
               158-408
               

               Cow position:
               chr11:3226737-3226996 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               187
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               53, 25
               

               Conread position:
               160-376
               

               Cow position:
               chr11:27668859-27668635 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               160-384
               

               Cow position:
               chr11:57626914-57626684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               158
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               160-668
               

               Cow position:
               chr11:19062939-19062422 (view UCSC Genome Browser custom track)
               

               Alignm length:
               524
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 263
               

               Conread position:
               160-668
               

               Cow position:
               chr11:26069908-26069391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               530
               

               Alignm identity:
               345
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               11, 29
               

               Conread position:
               168-377
               

               Cow position:
               chr11:11590113-11590327 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               158
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               28, 19
               

               Conread position:
               169-373
               

               Cow position:
               chr11:80473148-80472933 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               169-384
               

               Cow position:
               chr11:31927303-31927523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               64, 99
               

               Conread position:
               169-434
               

               Cow position:
               chr11:66730224-66730502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               186
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               56, 31
               

               Conread position:
               169-489
               

               Cow position:
               chr11:59628445-59628122 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               217
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               15, 127
               

               Conread position:
               169-516
               

               Cow position:
               chr11:28740175-28739830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               246
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               66, 229
               

               Conread position:
               169-668
               

               Cow position:
               chr11:44582204-44581689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               523
               

               Alignm identity:
               344
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               13, 174
               

               Conread position:
               170-384
               

               Cow position:
               chr11:3494138-3494357 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               170-384
               

               Cow position:
               chr11:17106533-17106314 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               155
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               170-384
               

               Cow position:
               chr11:63654185-63653966 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               155
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               170-384
               

               Cow position:
               chr11:67451641-67451860 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               170-431
               

               Cow position:
               chr11:38834299-38834032 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               182
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               17, 13
               

               Conread position:
               170-656
               

               Cow position:
               chr11:4026459-4025968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               498
               

               Alignm identity:
               309
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               63, 13
               

               Conread position:
               170-665
               

               Cow position:
               chr11:47738391-47737897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               507
               

               Alignm identity:
               328
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               50, 148
               

               Conread position:
               170-665
               

               Cow position:
               chr11:50836519-50836012 (view UCSC Genome Browser custom track)
               

               Alignm length:
               511
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 241
               

               Conread position:
               170-668
               

               Cow position:
               chr11:10848601-10849092 (view UCSC Genome Browser custom track)
               

               Alignm length:
               511
               

               Alignm identity:
               328
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               17, 9
               

               Conread position:
               170-668
               

               Cow position:
               chr11:12357262-12356747 (view UCSC Genome Browser custom track)
               

               Alignm length:
               522
               

               Alignm identity:
               333
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               42, 161
               

               Conread position:
               170-668
               

               Cow position:
               chr11:17119195-17118692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               514
               

               Alignm identity:
               330
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               62, 164
               

               Conread position:
               170-668
               

               Cow position:
               chr11:23881180-23881676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               507
               

               Alignm identity:
               316
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               63, 15
               

               Conread position:
               170-668
               

               Cow position:
               chr11:26548674-26549180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               516
               

               Alignm identity:
               331
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               65, 38
               

               Conread position:
               170-668
               

               Cow position:
               chr11:28228619-28228115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               510
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 286
               

               Conread position:
               170-668
               

               Cow position:
               chr11:44517715-44517211 (view UCSC Genome Browser custom track)
               

               Alignm length:
               509
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 284
               

               Conread position:
               170-668
               

               Cow position:
               chr11:72309889-72309384 (view UCSC Genome Browser custom track)
               

               Alignm length:
               512
               

               Alignm identity:
               321
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               39, 98
               

               Conread position:
               170-670
               

               Cow position:
               chr11:67154829-67155333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               513
               

               Alignm identity:
               330
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               64, 23
               

               Conread position:
               171-414
               

               Cow position:
               chr11:41234164-41234413 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               173
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               49, 0
               

               Conread position:
               171-665
               

               Cow position:
               chr11:17547310-17547809 (view UCSC Genome Browser custom track)
               

               Alignm length:
               505
               

               Alignm identity:
               322
               

               Alignm E-value:
               7.00649e-45
               

               Alignm gaps (pig, cow):
               50, 337
               

               Conread position:
               171-668
               

               Cow position:
               chr11:9733530-9733028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               510
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 16
               

               Conread position:
               171-668
               

               Cow position:
               chr11:67845421-67844917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               510
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 26
               

               Conread position:
               173-417
               

               Cow position:
               chr11:5647653-5647904 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               173-668
               

               Cow position:
               chr11:32452983-32453486 (view UCSC Genome Browser custom track)
               

               Alignm length:
               511
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 240
               

               Conread position:
               174-384
               

               Cow position:
               chr11:1489025-1488804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               176-668
               

               Cow position:
               chr11:86876730-86876230 (view UCSC Genome Browser custom track)
               

               Alignm length:
               505
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 236
               

               Conread position:
               182-428
               

               Cow position:
               chr11:4062743-4062497 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               5, 92
               

               Conread position:
               183-378
               

               Cow position:
               chr11:49238798-49238598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               144
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               32, 119
               

               Conread position:
               183-380
               

               Cow position:
               chr11:49039226-49039017 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               183-384
               

               Cow position:
               chr11:52420555-52420759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               147
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               26, 56
               

               Conread position:
               183-414
               

               Cow position:
               chr11:30253382-30253622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               172
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               33, 11
               

               Conread position:
               183-431
               

               Cow position:
               chr11:43513471-43513213 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               178
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               26, 159
               

               Conread position:
               183-665
               

               Cow position:
               chr11:26784409-26784903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               501
               

               Alignm identity:
               315
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               18, 232
               

               Conread position:
               183-668
               

               Cow position:
               chr11:13048611-13048141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               500
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 187
               

               Conread position:
               183-668
               

               Cow position:
               chr11:17106529-17106034 (view UCSC Genome Browser custom track)
               

               Alignm length:
               512
               

               Alignm identity:
               328
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               26, 85
               

               Conread position:
               183-668
               

               Cow position:
               chr11:19101340-19100837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               508
               

               Alignm identity:
               328
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               26, 159
               

               Conread position:
               183-668
               

               Cow position:
               chr11:26123774-26123269 (view UCSC Genome Browser custom track)
               

               Alignm length:
               521
               

               Alignm identity:
               351
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               26, 160
               

               Conread position:
               183-668
               

               Cow position:
               chr11:41169543-41169051 (view UCSC Genome Browser custom track)
               

               Alignm length:
               514
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 148
               

               Conread position:
               183-668
               

               Cow position:
               chr11:53286016-53285521 (view UCSC Genome Browser custom track)
               

               Alignm length:
               506
               

               Alignm identity:
               334
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               26, 213
               

               Conread position:
               183-668
               

               Cow position:
               chr11:53430878-53430378 (view UCSC Genome Browser custom track)
               

               Alignm length:
               503
               

               Alignm identity:
               323
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               26, 298
               

               Conread position:
               183-668
               

               Cow position:
               chr11:73134456-73134950 (view UCSC Genome Browser custom track)
               

               Alignm length:
               507
               

               Alignm identity:
               337
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               29, 113
               

               Conread position:
               183-668
               

               Cow position:
               chr11:75553856-75553369 (view UCSC Genome Browser custom track)
               

               Alignm length:
               512
               

               Alignm identity:
               337
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               29, 5
               

               Conread position:
               183-672
               

               Cow position:
               chr11:85392681-85392177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               510
               

               Alignm identity:
               320
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               26, 160
               

               Conread position:
               184-668
               

               Cow position:
               chr11:24394469-24394965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               516
               

               Alignm identity:
               335
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               25, 78
               

               Conread position:
               185-380
               

               Cow position:
               chr11:21475280-21475484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               151
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               46, 15
               

               Conread position:
               185-665
               

               Cow position:
               chr11:20733080-20732582 (view UCSC Genome Browser custom track)
               

               Alignm length:
               502
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 309
               

               Conread position:
               185-670
               

               Cow position:
               chr11:3856368-3856864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               512
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 10
               

               Conread position:
               188-665
               

               Cow position:
               chr11:64355968-64356437 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               304
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               43, 91
               

               Conread position:
               188-670
               

               Cow position:
               chr11:25393350-25393843 (view UCSC Genome Browser custom track)
               

               Alignm length:
               500
               

               Alignm identity:
               318
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               46, 27
               

               Conread position:
               189-665
               

               Cow position:
               chr11:61399927-61399452 (view UCSC Genome Browser custom track)
               

               Alignm length:
               485
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               196, 5
               

               Conread position:
               190-665
               

               Cow position:
               chr11:30208292-30208794 (view UCSC Genome Browser custom track)
               

               Alignm length:
               510
               

               Alignm identity:
               355
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 93
               

               Conread position:
               190-668
               

               Cow position:
               chr11:9224425-9223931 (view UCSC Genome Browser custom track)
               

               Alignm length:
               500
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 12
               

               Conread position:
               204-574
               

               Cow position:
               chr11:44231643-44232006 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               269
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               31, 52
               

               Conread position:
               204-661
               

               Cow position:
               chr11:29231790-29231342 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               291
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               180, 31
               

               Conread position:
               207-506
               

               Cow position:
               chr11:16985034-16984732 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               205
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               25, 111
               

               Conread position:
               209-379
               

               Cow position:
               chr11:12372647-12372474 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               124
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               214-402
               

               Cow position:
               chr11:9250002-9249807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               144
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               107, 25
               

               Conread position:
               222-509
               

               Cow position:
               chr11:18069736-18069457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               214
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               18, 94
               

               Conread position:
               231-405
               

               Cow position:
               chr11:35894690-35894516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               124
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               151, 46
               

               Conread position:
               231-665
               

               Cow position:
               chr11:50949113-50948662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               299
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               43, 96
               

               Conread position:
               233-664
               

               Cow position:
               chr11:31863301-31863737 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 158
               

               Conread position:
               234-411
               

               Cow position:
               chr11:23249252-23249074 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               130
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               139, 132
               

               Conread position:
               234-668
               

               Cow position:
               chr11:10883506-10883939 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               285
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               156, 132
               

               Conread position:
               236-402
               

               Cow position:
               chr11:17281261-17281092 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               120
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               236-506
               

               Cow position:
               chr11:40329764-40329487 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               188
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               118, 187
               

               Conread position:
               237-668
               

               Cow position:
               chr11:21889297-21888877 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               276
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               231, 109
               

               Conread position:
               238-668
               

               Cow position:
               chr11:29667376-29666940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               282
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               102, 79
               

               Conread position:
               255-504
               

               Cow position:
               chr11:49558074-49557832 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               170
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               255-651
               

               Cow position:
               chr11:44155761-44155368 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               254
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               135, 74
               

               Conread position:
               276-402
               

               Cow position:
               chr11:54483731-54483605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               129
               

               Alignm identity:
               101
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               104, 90
               

               Conread position:
               279-665
               

               Cow position:
               chr11:40405790-40405402 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               257
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               111, 225
               

               Conread position:
               300-665
               

               Cow position:
               chr11:35254015-35253649 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               257
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               81, 39
               

               Conread position:
               304-646
               

               Cow position:
               chr11:47728404-47728059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               219
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               86, 109
               

               Conread position:
               318-668
               

               Cow position:
               chr11:78672533-78672185 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               238
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               71, 135
               

               Conread position:
               421-668
               

               Cow position:
               chr11:42371195-42371463 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               193
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               435-665
               

               Cow position:
               chr11:21470210-21470448 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               62, 103
               

               Conread position:
               508-656
               

               Cow position:
               chr11:23248979-23248826 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               115
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               77, 149
               

               Conread position:
               508-657
               

               Cow position:
               chr11:4062387-4062236 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               113
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               84, 54
               

               Conread position:
               508-657
               

               Cow position:
               chr11:52436339-52436492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               113
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               508-664
               

               Cow position:
               chr11:8265006-8265162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               123
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               97, 80
               

               Conread position:
               508-665
               

               Cow position:
               chr11:3227232-3227393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               124
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               10, 102
               

               Conread position:
               508-665
               

               Cow position:
               chr11:30182365-30182206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               118
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               76, 122
               

               Conread position:
               508-665
               

               Cow position:
               chr11:44094131-44093970 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               123
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               508-668
               

               Cow position:
               chr11:4268676-4268510 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               123
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               508-668
               

               Cow position:
               chr11:18069437-18069277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               115
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               85, 140
               

               Conread position:
               508-668
               

               Cow position:
               chr11:27726429-27726265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               124
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               508-668
               

               Cow position:
               chr11:30253714-30253878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               125
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               508-668
               

               Cow position:
               chr11:43513139-43512974 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               122
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               84, 0
               

               Conread position:
               508-668
               

               Cow position:
               chr11:66860999-66860839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               119
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               84, 37
               

               Conread position:
               508-668
               

               Cow position:
               chr11:67451983-67452145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               121
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               84, 0
               

               Conread position:
               508-670
               

               Cow position:
               chr11:21898194-21898028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               119
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               508-670
               

               Cow position:
               chr11:27835243-27835082 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               120
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               85, 0
               

               Conread position:
               508-672
               

               Cow position:
               chr11:15986733-15986904 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               127
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               509-670
               

               Cow position:
               chr11:30189216-30189380 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               129
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               76, 146
               

               Conread position:
               510-663
               

               Cow position:
               chr11:32479328-32479171 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               117
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               510-665
               

               Cow position:
               chr11:1488685-1488528 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               119
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               82, 16
               

               Conread position:
               511-656
               

               Cow position:
               chr11:40774534-40774388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               112
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               525-668
               

               Cow position:
               chr11:24291967-24292110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               110
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               561-668
               

               Cow position:
               chr11:7720847-7720738 (view UCSC Genome Browser custom track)
               

               Alignm length:
               110
               

               Alignm identity:
               91
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               131-668
               

               Cow position:
               chr12:34174739-34175285 (view UCSC Genome Browser custom track)
               

               Alignm length:
               553
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 298
               

               Conread position:
               154-668
               

               Cow position:
               chr12:23161491-23160971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               545
               

               Alignm identity:
               358
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               37, 19
               

               Conread position:
               157-668
               

               Cow position:
               chr12:27854541-27854023 (view UCSC Genome Browser custom track)
               

               Alignm length:
               524
               

               Alignm identity:
               334
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               10, 27
               

               Conread position:
               160-380
               

               Cow position:
               chr12:48471459-48471236 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               155
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               170-400
               

               Cow position:
               chr12:14660914-14660678 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               159
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               40, 164
               

               Conread position:
               170-405
               

               Cow position:
               chr12:22568317-22568078 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               165
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               50, 97
               

               Conread position:
               170-414
               

               Cow position:
               chr12:1888123-1887873 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               165
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               170-414
               

               Cow position:
               chr12:24994527-24994277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               170
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               170-435
               

               Cow position:
               chr12:34174553-34174821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               153
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               50, 177
               

               Conread position:
               170-668
               

               Cow position:
               chr12:22204276-22203773 (view UCSC Genome Browser custom track)
               

               Alignm length:
               509
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 13
               

               Conread position:
               170-668
               

               Cow position:
               chr12:27931473-27930966 (view UCSC Genome Browser custom track)
               

               Alignm length:
               517
               

               Alignm identity:
               331
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               17, 13
               

               Conread position:
               170-668
               

               Cow position:
               chr12:42858100-42857595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               514
               

               Alignm identity:
               333
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               17, 13
               

               Conread position:
               171-384
               

               Cow position:
               chr12:3362375-3362589 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               154
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               64, 22
               

               Conread position:
               171-670
               

               Cow position:
               chr12:3209405-3209909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               510
               

               Alignm identity:
               319
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               20, 322
               

               Conread position:
               172-668
               

               Cow position:
               chr12:21253147-21252643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               510
               

               Alignm identity:
               327
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               48, 25
               

               Conread position:
               176-396
               

               Cow position:
               chr12:21943180-21943410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               59, 226
               

               Conread position:
               183-404
               

               Cow position:
               chr12:30685185-30685416 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               26, 11
               

               Conread position:
               183-414
               

               Cow position:
               chr12:21482555-21482787 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               52, 24
               

               Conread position:
               183-668
               

               Cow position:
               chr12:6405196-6404697 (view UCSC Genome Browser custom track)
               

               Alignm length:
               505
               

               Alignm identity:
               323
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               26, 157
               

               Conread position:
               183-668
               

               Cow position:
               chr12:11099666-11100178 (view UCSC Genome Browser custom track)
               

               Alignm length:
               528
               

               Alignm identity:
               356
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               29, 160
               

               Conread position:
               183-668
               

               Cow position:
               chr12:21210104-21210605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               509
               

               Alignm identity:
               332
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               34, 236
               

               Conread position:
               183-668
               

               Cow position:
               chr12:21429448-21429950 (view UCSC Genome Browser custom track)
               

               Alignm length:
               506
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 236
               

               Conread position:
               183-668
               

               Cow position:
               chr12:32654996-32655487 (view UCSC Genome Browser custom track)
               

               Alignm length:
               502
               

               Alignm identity:
               323
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               52, 90
               

               Conread position:
               183-668
               

               Cow position:
               chr12:42606808-42606309 (view UCSC Genome Browser custom track)
               

               Alignm length:
               504
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 285
               

               Conread position:
               184-403
               

               Cow position:
               chr12:17980149-17980383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               172
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               17, 209
               

               Conread position:
               184-433
               

               Cow position:
               chr12:23140725-23140468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               184-652
               

               Cow position:
               chr12:37560454-37560929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               494
               

               Alignm identity:
               328
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               25, 79
               

               Conread position:
               185-414
               

               Cow position:
               chr12:35345979-35346216 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               46, 213
               

               Conread position:
               190-400
               

               Cow position:
               chr12:1776509-1776294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               156
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               41, 114
               

               Conread position:
               204-420
               

               Cow position:
               chr12:24433608-24433393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               148
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               182, 23
               

               Conread position:
               204-665
               

               Cow position:
               chr12:21092250-21091798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               289
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               201, 30
               

               Conread position:
               204-668
               

               Cow position:
               chr12:25098998-25098537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               288
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               130, 29
               

               Conread position:
               204-670
               

               Cow position:
               chr12:19870365-19870824 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               301
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               323, 28
               

               Conread position:
               231-420
               

               Cow position:
               chr12:3971037-3970850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               135
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               165, 54
               

               Conread position:
               232-372
               

               Cow position:
               chr12:32391342-32391480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               105
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               232-384
               

               Cow position:
               chr12:15950304-15950152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               113
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               232-504
               

               Cow position:
               chr12:466772-466514 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               186
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               17, 40
               

               Conread position:
               234-425
               

               Cow position:
               chr12:32677490-32677298 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               147, 105
               

               Conread position:
               236-429
               

               Cow position:
               chr12:43913345-43913541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               137
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               98, 104
               

               Conread position:
               238-668
               

               Cow position:
               chr12:20461721-20461291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               282
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               102, 91
               

               Conread position:
               508-665
               

               Cow position:
               chr12:21427815-21427654 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               121
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               508-665
               

               Cow position:
               chr12:22519203-22519043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               119
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               76, 93
               

               Conread position:
               508-668
               

               Cow position:
               chr12:23139397-23139233 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               123
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               79, 148
               

               Conread position:
               508-668
               

               Cow position:
               chr12:25261742-25261577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               125
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               509-668
               

               Cow position:
               chr12:8676311-8676143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               125
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               511-665
               

               Cow position:
               chr12:15950026-15949874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               112
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               512-668
               

               Cow position:
               chr12:20996319-20996163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               115
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               80, 93
               

               Conread position:
               157-665
               

               Cow position:
               chr13:47575286-47575815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               540
               

               Alignm identity:
               348
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               10, 36
               

               Conread position:
               158-670
               

               Cow position:
               chr13:14177646-14177142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               520
               

               Alignm identity:
               336
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               9, 77
               

               Conread position:
               160-384
               

               Cow position:
               chr13:20541051-20540819 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               160-414
               

               Cow position:
               chr13:31732688-31732430 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               173
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               11, 28
               

               Conread position:
               160-668
               

               Cow position:
               chr13:4942590-4943107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               524
               

               Alignm identity:
               334
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               11, 24
               

               Conread position:
               160-668
               

               Cow position:
               chr13:33335105-33334600 (view UCSC Genome Browser custom track)
               

               Alignm length:
               521
               

               Alignm identity:
               334
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               7, 20
               

               Conread position:
               160-668
               

               Cow position:
               chr13:60648600-60648083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               522
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 295
               

               Conread position:
               169-367
               

               Cow position:
               chr13:25692878-25693092 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               169-668
               

               Cow position:
               chr13:31508125-31508628 (view UCSC Genome Browser custom track)
               

               Alignm length:
               508
               

               Alignm identity:
               320
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               70, 289
               

               Conread position:
               169-668
               

               Cow position:
               chr13:34030812-34031315 (view UCSC Genome Browser custom track)
               

               Alignm length:
               527
               

               Alignm identity:
               339
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               28, 188
               

               Conread position:
               170-378
               

               Cow position:
               chr13:42217466-42217253 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               170-384
               

               Cow position:
               chr13:2387589-2387370 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               10, 28
               

               Conread position:
               170-384
               

               Cow position:
               chr13:11388214-11388432 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               170-384
               

               Cow position:
               chr13:17309680-17309898 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               153
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               170-384
               

               Cow position:
               chr13:50193179-50192963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               45, 99
               

               Conread position:
               170-384
               

               Cow position:
               chr13:60468642-60468861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               50, 174
               

               Conread position:
               170-414
               

               Cow position:
               chr13:21697480-21697730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               170
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               170-414
               

               Cow position:
               chr13:34324359-34324112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               169
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               170-663
               

               Cow position:
               chr13:13326145-13326638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               504
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 13
               

               Conread position:
               170-668
               

               Cow position:
               chr13:14401890-14401382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               517
               

               Alignm identity:
               329
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               7, 69
               

               Conread position:
               170-668
               

               Cow position:
               chr13:33524740-33524237 (view UCSC Genome Browser custom track)
               

               Alignm length:
               510
               

               Alignm identity:
               323
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               50, 286
               

               Conread position:
               170-668
               

               Cow position:
               chr13:34041118-34040614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               513
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 13
               

               Conread position:
               170-668
               

               Cow position:
               chr13:49974882-49975397 (view UCSC Genome Browser custom track)
               

               Alignm length:
               518
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 177
               

               Conread position:
               170-668
               

               Cow position:
               chr13:50110669-50111182 (view UCSC Genome Browser custom track)
               

               Alignm length:
               518
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 346
               

               Conread position:
               171-668
               

               Cow position:
               chr13:6358341-6358845 (view UCSC Genome Browser custom track)
               

               Alignm length:
               509
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 313
               

               Conread position:
               171-668
               

               Cow position:
               chr13:32923918-32923411 (view UCSC Genome Browser custom track)
               

               Alignm length:
               515
               

               Alignm identity:
               333
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               58, 29
               

               Conread position:
               173-431
               

               Cow position:
               chr13:6666920-6666656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               175
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               44, 161
               

               Conread position:
               173-668
               

               Cow position:
               chr13:11797496-11796986 (view UCSC Genome Browser custom track)
               

               Alignm length:
               519
               

               Alignm identity:
               339
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               36, 21
               

               Conread position:
               174-665
               

               Cow position:
               chr13:49494966-49494460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               511
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 295
               

               Conread position:
               175-380
               

               Cow position:
               chr13:50661491-50661705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               60, 143
               

               Conread position:
               176-612
               

               Cow position:
               chr13:14186223-14186664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               275
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               20, 242
               

               Conread position:
               176-668
               

               Cow position:
               chr13:5500777-5500277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               506
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 280
               

               Conread position:
               178-379
               

               Cow position:
               chr13:3534672-3534459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               148
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               183-365
               

               Cow position:
               chr13:678971-679167 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               183-380
               

               Cow position:
               chr13:15543760-15543971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               149
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               26, 160
               

               Conread position:
               183-414
               

               Cow position:
               chr13:34938661-34938903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               26, 157
               

               Conread position:
               183-429
               

               Cow position:
               chr13:3482598-3482355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               175
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               20, 51
               

               Conread position:
               183-431
               

               Cow position:
               chr13:31729672-31729420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               170
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               26, 84
               

               Conread position:
               183-668
               

               Cow position:
               chr13:21838978-21838491 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               319
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               37, 228
               

               Conread position:
               183-668
               

               Cow position:
               chr13:32984124-32983622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               507
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 282
               

               Conread position:
               183-668
               

               Cow position:
               chr13:34343126-34343630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               509
               

               Alignm identity:
               322
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               26, 160
               

               Conread position:
               183-668
               

               Cow position:
               chr13:35758505-35759000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               503
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 156
               

               Conread position:
               185-506
               

               Cow position:
               chr13:728460-728768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               228
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               44, 150
               

               Conread position:
               185-655
               

               Cow position:
               chr13:60423977-60424448 (view UCSC Genome Browser custom track)
               

               Alignm length:
               486
               

               Alignm identity:
               305
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               24, 235
               

               Conread position:
               185-657
               

               Cow position:
               chr13:43981863-43981386 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               318
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               16, 220
               

               Conread position:
               188-668
               

               Cow position:
               chr13:32735947-32735470 (view UCSC Genome Browser custom track)
               

               Alignm length:
               491
               

               Alignm identity:
               320
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               157, 24
               

               Conread position:
               190-401
               

               Cow position:
               chr13:34049959-34050159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               156
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               201, 23
               

               Conread position:
               212-668
               

               Cow position:
               chr13:57025096-57025573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               320
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               6, 176
               

               Conread position:
               228-668
               

               Cow position:
               chr13:22184059-22183610 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               152, 17
               

               Conread position:
               231-432
               

               Cow position:
               chr13:11739196-11739396 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               159, 107
               

               Conread position:
               232-668
               

               Cow position:
               chr13:15449870-15449451 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               297
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               32, 116
               

               Conread position:
               234-400
               

               Cow position:
               chr13:43590604-43590767 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               120
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               152, 29
               

               Conread position:
               236-668
               

               Cow position:
               chr13:34869259-34869684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               241, 150
               

               Conread position:
               238-414
               

               Cow position:
               chr13:9298735-9298912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               101, 91
               

               Conread position:
               238-665
               

               Cow position:
               chr13:30304486-30304915 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               273
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               152, 176
               

               Conread position:
               306-670
               

               Cow position:
               chr13:11246798-11246429 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               265
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               201, 81
               

               Conread position:
               313-668
               

               Cow position:
               chr13:21907835-21907456 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               260
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               76, 153
               

               Conread position:
               433-668
               

               Cow position:
               chr13:14523673-14523428 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               175
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               62, 188
               

               Conread position:
               435-670
               

               Cow position:
               chr13:53553064-53552804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               187
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               64, 136
               

               Conread position:
               448-668
               

               Cow position:
               chr13:36348663-36348427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               167
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               488-668
               

               Cow position:
               chr13:17309954-17310138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               107
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               98, 0
               

               Conread position:
               508-665
               

               Cow position:
               chr13:3760071-3759910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               125
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               508-665
               

               Cow position:
               chr13:16921016-16921177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               122
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               508-665
               

               Cow position:
               chr13:49613978-49613817 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               122
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               508-665
               

               Cow position:
               chr13:54239883-54239721 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               125
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               508-668
               

               Cow position:
               chr13:4485419-4485581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               124
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               84, 57
               

               Conread position:
               508-668
               

               Cow position:
               chr13:6666581-6666417 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               124
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               508-668
               

               Cow position:
               chr13:11388763-11388927 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               122
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               508-668
               

               Cow position:
               chr13:15922900-15922736 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               128
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               508-668
               

               Cow position:
               chr13:18331550-18331386 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               122
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               508-668
               

               Cow position:
               chr13:23454993-23455157 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               121
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               508-668
               

               Cow position:
               chr13:31729347-31729184 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               123
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               84, 12
               

               Conread position:
               508-668
               

               Cow position:
               chr13:61952818-61952980 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               124
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               76, 133
               

               Conread position:
               508-670
               

               Cow position:
               chr13:16252959-16252795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               127
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               30, 20
               

               Conread position:
               508-670
               

               Cow position:
               chr13:34050259-34050426 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               135
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               509-672
               

               Cow position:
               chr13:15558899-15559066 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               122
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               511-664
               

               Cow position:
               chr13:24236006-24236164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               117
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               511-668
               

               Cow position:
               chr13:20540272-20540117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               118
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               86, 9
               

               Conread position:
               511-668
               

               Cow position:
               chr13:21058230-21058390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               120
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               76, 108
               

               Conread position:
               511-668
               

               Cow position:
               chr13:59979701-59979540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               121
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               157-665
               

               Cow position:
               chr14:43559313-43559825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               522
               

               Alignm identity:
               333
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               10, 128
               

               Conread position:
               157-670
               

               Cow position:
               chr14:44552916-44553427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               527
               

               Alignm identity:
               332
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               10, 130
               

               Conread position:
               158-668
               

               Cow position:
               chr14:11476209-11475696 (view UCSC Genome Browser custom track)
               

               Alignm length:
               526
               

               Alignm identity:
               340
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               13, 26
               

               Conread position:
               160-668
               

               Cow position:
               chr14:191125-191646 (view UCSC Genome Browser custom track)
               

               Alignm length:
               527
               

               Alignm identity:
               340
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               7, 24
               

               Conread position:
               160-668
               

               Cow position:
               chr14:2287347-2287862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               523
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 119
               

               Conread position:
               165-402
               

               Cow position:
               chr14:41410836-41411077 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               45, 20
               

               Conread position:
               169-411
               

               Cow position:
               chr14:15274758-15274501 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               173
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               169-665
               

               Cow position:
               chr14:18417587-18418085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               514
               

               Alignm identity:
               324
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               16, 234
               

               Conread position:
               169-668
               

               Cow position:
               chr14:19327172-19326666 (view UCSC Genome Browser custom track)
               

               Alignm length:
               516
               

               Alignm identity:
               338
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               19, 14
               

               Conread position:
               170-367
               

               Cow position:
               chr14:10147966-10148168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               144
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               170-384
               

               Cow position:
               chr14:9046670-9046890 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               154
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               170-414
               

               Cow position:
               chr14:13863005-13862757 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               45, 112
               

               Conread position:
               170-434
               

               Cow position:
               chr14:12124091-12123820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               170-646
               

               Cow position:
               chr14:45670944-45670448 (view UCSC Genome Browser custom track)
               

               Alignm length:
               498
               

               Alignm identity:
               318
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               50, 345
               

               Conread position:
               170-664
               

               Cow position:
               chr14:44290157-44290656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               515
               

               Alignm identity:
               337
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               39, 13
               

               Conread position:
               170-668
               

               Cow position:
               chr14:751658-752162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               510
               

               Alignm identity:
               325
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               50, 102
               

               Conread position:
               170-668
               

               Cow position:
               chr14:5530149-5530655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               513
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 13
               

               Conread position:
               170-668
               

               Cow position:
               chr14:16808231-16807726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               513
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 252
               

               Conread position:
               170-668
               

               Cow position:
               chr14:17490247-17489743 (view UCSC Genome Browser custom track)
               

               Alignm length:
               510
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 164
               

               Conread position:
               170-668
               

               Cow position:
               chr14:29046582-29046083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               510
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 244
               

               Conread position:
               170-668
               

               Cow position:
               chr14:37225249-37225753 (view UCSC Genome Browser custom track)
               

               Alignm length:
               510
               

               Alignm identity:
               323
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               63, 15
               

               Conread position:
               170-670
               

               Cow position:
               chr14:38814395-38813884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               528
               

               Alignm identity:
               370
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 13
               

               Conread position:
               171-431
               

               Cow position:
               chr14:11153060-11152794 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               175
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               58, 163
               

               Conread position:
               171-670
               

               Cow position:
               chr14:47939883-47939373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               524
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 14
               

               Conread position:
               173-380
               

               Cow position:
               chr14:25693043-25693252 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               143
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               27, 96
               

               Conread position:
               176-366
               

               Cow position:
               chr14:45207379-45207575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               140
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               48, 17
               

               Conread position:
               176-384
               

               Cow position:
               chr14:30595259-30595044 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               152
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               59, 31
               

               Conread position:
               178-380
               

               Cow position:
               chr14:43556068-43556288 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               155
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               31, 19
               

               Conread position:
               179-378
               

               Cow position:
               chr14:9521621-9521416 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               149
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               53, 161
               

               Conread position:
               183-369
               

               Cow position:
               chr14:35930692-35930882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               48, 90
               

               Conread position:
               183-380
               

               Cow position:
               chr14:12611507-12611716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               151
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               183-380
               

               Cow position:
               chr14:33402778-33402986 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               151
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               26, 107
               

               Conread position:
               183-665
               

               Cow position:
               chr14:45710633-45710143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               500
               

               Alignm identity:
               319
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               26, 66
               

               Conread position:
               183-668
               

               Cow position:
               chr14:1659551-1660055 (view UCSC Genome Browser custom track)
               

               Alignm length:
               508
               

               Alignm identity:
               327
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               29, 236
               

               Conread position:
               183-668
               

               Cow position:
               chr14:5075048-5075533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               498
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 99
               

               Conread position:
               183-668
               

               Cow position:
               chr14:16999961-16999454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               527
               

               Alignm identity:
               363
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               29, 5
               

               Conread position:
               184-584
               

               Cow position:
               chr14:27978452-27978865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               265
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               24, 224
               

               Conread position:
               185-384
               

               Cow position:
               chr14:23256264-23256051 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               185-402
               

               Cow position:
               chr14:2295370-2295598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               163
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               27, 152
               

               Conread position:
               185-635
               

               Cow position:
               chr14:45677984-45677527 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 14
               

               Conread position:
               185-668
               

               Cow position:
               chr14:16342799-16342304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               501
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 23
               

               Conread position:
               185-669
               

               Cow position:
               chr14:35425220-35425711 (view UCSC Genome Browser custom track)
               

               Alignm length:
               504
               

               Alignm identity:
               323
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               16, 210
               

               Conread position:
               186-402
               

               Cow position:
               chr14:41475884-41476101 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               29, 79
               

               Conread position:
               188-664
               

               Cow position:
               chr14:20783568-20784060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               319
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               21, 155
               

               Conread position:
               189-425
               

               Cow position:
               chr14:37454839-37454599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               45, 78
               

               Conread position:
               190-413
               

               Cow position:
               chr14:11561948-11562176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               163
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               39, 113
               

               Conread position:
               196-646
               

               Cow position:
               chr14:34861748-34862190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               307
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               54, 31
               

               Conread position:
               200-665
               

               Cow position:
               chr14:47643416-47643881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               311
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               26, 13
               

               Conread position:
               204-378
               

               Cow position:
               chr14:21745205-21745382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               127
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               35, 135
               

               Conread position:
               204-662
               

               Cow position:
               chr14:45188676-45188221 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               293
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               181, 26
               

               Conread position:
               205-402
               

               Cow position:
               chr14:40167552-40167348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               147
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               208-628
               

               Cow position:
               chr14:46403085-46403508 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               281
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               27, 162
               

               Conread position:
               213-670
               

               Cow position:
               chr14:17965441-17965899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               286
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               46, 175
               

               Conread position:
               231-425
               

               Cow position:
               chr14:11654708-11654520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               135
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               188, 143
               

               Conread position:
               231-447
               

               Cow position:
               chr14:33402998-33403207 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               232-405
               

               Cow position:
               chr14:17610223-17610394 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               128
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               152, 106
               

               Conread position:
               236-383
               

               Cow position:
               chr14:45027839-45027693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               113
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               102, 0
               

               Conread position:
               238-668
               

               Cow position:
               chr14:45086388-45086816 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               280
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               107, 35
               

               Conread position:
               259-668
               

               Cow position:
               chr14:46390444-46390033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               269
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               126, 135
               

               Conread position:
               276-665
               

               Cow position:
               chr14:42122375-42121987 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 195
               

               Conread position:
               276-670
               

               Cow position:
               chr14:30704961-30704548 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 133
               

               Conread position:
               277-668
               

               Cow position:
               chr14:35384420-35384031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               252
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               176, 111
               

               Conread position:
               285-668
               

               Cow position:
               chr14:44690391-44690772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               246
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               49, 44
               

               Conread position:
               291-668
               

               Cow position:
               chr14:29774905-29774520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               248
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               60, 97
               

               Conread position:
               296-668
               

               Cow position:
               chr14:33490059-33490433 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               251
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               96, 62
               

               Conread position:
               340-509
               

               Cow position:
               chr14:30761660-30761498 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               130
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               49, 68
               

               Conread position:
               394-668
               

               Cow position:
               chr14:46502999-46503286 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               196
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               28, 5
               

               Conread position:
               394-670
               

               Cow position:
               chr14:20564348-20564081 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               190
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               433-665
               

               Cow position:
               chr14:7473689-7473944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               178
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               72, 0
               

               Conread position:
               434-670
               

               Cow position:
               chr14:13462794-13463039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               63, 140
               

               Conread position:
               434-670
               

               Cow position:
               chr14:38228358-38228113 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               68, 12
               

               Conread position:
               457-670
               

               Cow position:
               chr14:8898668-8898898 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               503-668
               

               Cow position:
               chr14:17688277-17688443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               119
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               508-662
               

               Cow position:
               chr14:9513682-9513517 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               129
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               8, 25
               

               Conread position:
               508-663
               

               Cow position:
               chr14:13579790-13579949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               122
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               84, 0
               

               Conread position:
               508-664
               

               Cow position:
               chr14:30582688-30582529 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               120
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               79, 93
               

               Conread position:
               508-665
               

               Cow position:
               chr14:33392491-33392330 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               124
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               508-668
               

               Cow position:
               chr14:15274117-15273954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               123
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               85, 0
               

               Conread position:
               508-668
               

               Cow position:
               chr14:16271893-16271729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               122
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               508-668
               

               Cow position:
               chr14:23255928-23255763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               125
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               508-668
               

               Cow position:
               chr14:27066321-27066159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               122
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               17, 27
               

               Conread position:
               508-668
               

               Cow position:
               chr14:30594921-30594757 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               125
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               33, 24
               

               Conread position:
               508-668
               

               Cow position:
               chr14:32448387-32448553 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               120
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               84, 0
               

               Conread position:
               508-668
               

               Cow position:
               chr14:34998551-34998713 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               120
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               77, 46
               

               Conread position:
               508-668
               

               Cow position:
               chr14:48252894-48252732 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               124
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               84, 112
               

               Conread position:
               508-668
               

               Cow position:
               chr14:50112792-50112961 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               124
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               509-661
               

               Cow position:
               chr14:22361435-22361584 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               124
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               509-665
               

               Cow position:
               chr14:45207994-45208155 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               116
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               509-668
               

               Cow position:
               chr14:30761476-30761316 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               127
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               78, 28
               

               Conread position:
               509-668
               

               Cow position:
               chr14:48600918-48600756 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               120
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               76, 11
               

               Conread position:
               509-670
               

               Cow position:
               chr14:44380780-44380947 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               122
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               511-668
               

               Cow position:
               chr14:12741609-12741451 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               117
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               76, 9
               

               Conread position:
               513-668
               

               Cow position:
               chr14:47926516-47926675 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               120
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               50, 43
               

               Conread position:
               516-668
               

               Cow position:
               chr14:40343760-40343916 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               121
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               522-665
               

               Cow position:
               chr14:46221524-46221671 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               112
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               533-668
               

               Cow position:
               chr14:36908746-36908607 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               106
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               155-665
               

               Cow position:
               chr15:3777604-3777102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               522
               

               Alignm identity:
               333
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               57, 10
               

               Conread position:
               157-659
               

               Cow position:
               chr15:24794899-24795406 (view UCSC Genome Browser custom track)
               

               Alignm length:
               522
               

               Alignm identity:
               342
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               10, 27
               

               Conread position:
               160-384
               

               Cow position:
               chr15:2013637-2013869 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               165
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               160-414
               

               Cow position:
               chr15:4672512-4672772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               174
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               11, 164
               

               Conread position:
               160-509
               

               Cow position:
               chr15:7261683-7262027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               241
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               7, 197
               

               Conread position:
               160-583
               

               Cow position:
               chr15:14581282-14580854 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               271
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               7, 160
               

               Conread position:
               160-664
               

               Cow position:
               chr15:21450762-21451272 (view UCSC Genome Browser custom track)
               

               Alignm length:
               527
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 24
               

               Conread position:
               166-668
               

               Cow position:
               chr15:6154851-6154337 (view UCSC Genome Browser custom track)
               

               Alignm length:
               524
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 178
               

               Conread position:
               169-401
               

               Cow position:
               chr15:9003143-9002896 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               175
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               169-414
               

               Cow position:
               chr15:11293349-11293106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               173
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               18, 14
               

               Conread position:
               169-506
               

               Cow position:
               chr15:7783354-7783026 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               229
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               81, 70
               

               Conread position:
               169-659
               

               Cow position:
               chr15:53299548-53300040 (view UCSC Genome Browser custom track)
               

               Alignm length:
               506
               

               Alignm identity:
               326
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               9, 192
               

               Conread position:
               169-668
               

               Cow position:
               chr15:21664660-21664147 (view UCSC Genome Browser custom track)
               

               Alignm length:
               519
               

               Alignm identity:
               335
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               40, 172
               

               Conread position:
               169-668
               

               Cow position:
               chr15:35752227-35751704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               531
               

               Alignm identity:
               343
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               16, 175
               

               Conread position:
               170-377
               

               Cow position:
               chr15:32067519-32067308 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               149
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               51, 88
               

               Conread position:
               170-384
               

               Cow position:
               chr15:4197556-4197775 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               170-384
               

               Cow position:
               chr15:7892258-7892039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               170-384
               

               Cow position:
               chr15:17077473-17077255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               153
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               170-384
               

               Cow position:
               chr15:50148170-50148394 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               160
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               50, 201
               

               Conread position:
               170-403
               

               Cow position:
               chr15:5010542-5010303 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               166
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               170-411
               

               Cow position:
               chr15:6613811-6614060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               173
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               170-414
               

               Cow position:
               chr15:107090-107340 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               171
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               170-414
               

               Cow position:
               chr15:1833549-1833300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               170
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               50, 173
               

               Conread position:
               170-414
               

               Cow position:
               chr15:3008753-3008505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               50, 98
               

               Conread position:
               170-602
               

               Cow position:
               chr15:35898687-35898248 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               279
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               50, 249
               

               Conread position:
               170-640
               

               Cow position:
               chr15:58741-59219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               302
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               65, 37
               

               Conread position:
               170-642
               

               Cow position:
               chr15:41659257-41659737 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               312
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               50, 249
               

               Conread position:
               170-658
               

               Cow position:
               chr15:18266686-18266180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               511
               

               Alignm identity:
               322
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               50, 115
               

               Conread position:
               170-665
               

               Cow position:
               chr15:2646560-2646056 (view UCSC Genome Browser custom track)
               

               Alignm length:
               515
               

               Alignm identity:
               335
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               50, 99
               

               Conread position:
               170-665
               

               Cow position:
               chr15:4726291-4726795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               511
               

               Alignm identity:
               325
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               17, 13
               

               Conread position:
               170-665
               

               Cow position:
               chr15:6561676-6562179 (view UCSC Genome Browser custom track)
               

               Alignm length:
               507
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 248
               

               Conread position:
               170-665
               

               Cow position:
               chr15:33122467-33122972 (view UCSC Genome Browser custom track)
               

               Alignm length:
               510
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 343
               

               Conread position:
               170-668
               

               Cow position:
               chr15:2588359-2587844 (view UCSC Genome Browser custom track)
               

               Alignm length:
               521
               

               Alignm identity:
               334
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               11, 287
               

               Conread position:
               170-668
               

               Cow position:
               chr15:4386845-4387347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               509
               

               Alignm identity:
               326
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               17, 151
               

               Conread position:
               170-668
               

               Cow position:
               chr15:7564086-7564593 (view UCSC Genome Browser custom track)
               

               Alignm length:
               511
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 229
               

               Conread position:
               170-668
               

               Cow position:
               chr15:7838358-7838864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               514
               

               Alignm identity:
               332
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               26, 13
               

               Conread position:
               170-668
               

               Cow position:
               chr15:15346018-15345511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               512
               

               Alignm identity:
               321
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               17, 9
               

               Conread position:
               170-668
               

               Cow position:
               chr15:19736966-19736449 (view UCSC Genome Browser custom track)
               

               Alignm length:
               524
               

               Alignm identity:
               330
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               59, 102
               

               Conread position:
               170-668
               

               Cow position:
               chr15:20411687-20412190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               513
               

               Alignm identity:
               328
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               17, 9
               

               Conread position:
               170-668
               

               Cow position:
               chr15:25205915-25205412 (view UCSC Genome Browser custom track)
               

               Alignm length:
               511
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 227
               

               Conread position:
               170-668
               

               Cow position:
               chr15:50122842-50122343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               510
               

               Alignm identity:
               330
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               50, 194
               

               Conread position:
               170-670
               

               Cow position:
               chr15:35736886-35737392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               512
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 9
               

               Conread position:
               171-373
               

               Cow position:
               chr15:8751487-8751693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               145
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               38, 16
               

               Conread position:
               171-573
               

               Cow position:
               chr15:500260-500681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               284
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               68, 142
               

               Conread position:
               171-668
               

               Cow position:
               chr15:4686816-4687325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               518
               

               Alignm identity:
               330
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               63, 23
               

               Conread position:
               173-665
               

               Cow position:
               chr15:5981445-5981949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               511
               

               Alignm identity:
               317
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               38, 117
               

               Conread position:
               173-668
               

               Cow position:
               chr15:17294147-17294643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               508
               

               Alignm identity:
               326
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               36, 152
               

               Conread position:
               174-374
               

               Cow position:
               chr15:1851373-1851168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               175-405
               

               Cow position:
               chr15:36624757-36624526 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               165
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               56, 13
               

               Conread position:
               175-504
               

               Cow position:
               chr15:21965081-21965414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               221
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               40, 12
               

               Conread position:
               177-431
               

               Cow position:
               chr15:51613241-51613493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               184
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               36, 19
               

               Conread position:
               177-663
               

               Cow position:
               chr15:42531009-42531509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               507
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 141
               

               Conread position:
               179-414
               

               Cow position:
               chr15:32712326-32712576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               33, 225
               

               Conread position:
               180-657
               

               Cow position:
               chr15:9737828-9737348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               495
               

               Alignm identity:
               311
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               21, 85
               

               Conread position:
               183-380
               

               Cow position:
               chr15:9912138-9911928 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               26, 112
               

               Conread position:
               183-400
               

               Cow position:
               chr15:4141641-4141412 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               183-401
               

               Cow position:
               chr15:4108215-4107982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               29, 171
               

               Conread position:
               183-401
               

               Cow position:
               chr15:20355497-20355272 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               174
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               29, 92
               
183-414UCSC Genome Browser
               Conread position:
               
               

               Cow position:
               chr15:24718424-24718662 (view  custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               166
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               51, 0
               
183-502UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr15:11626756-11627074 (view  custom track)

               
               
               
Alignm length: 333

               
               
               
Alignm identity: 232

               
               
               
Alignm E-value: 1e-34

               
               
               
Alignm gaps (pig, cow): 64, 30
183-506UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr15:25653973-25653652 (view  custom track)

               
               
               
Alignm length: 338

               
               
               
Alignm identity: 226

               
               
               
Alignm E-value: 2e-27

               
               
               
Alignm gaps (pig, cow): 26, 238

               
               
               Conread position:183-658
               
               
               Cow position:chr15:53410007-53410474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:308
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):26, 229

               
               
               Conread position:183-664
               
               
               Cow position:chr15:50869432-50869924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:327
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):15, 224

               
               
               Conread position:183-668
               
               
               Cow position:chr15:18331740-18331242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:330
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):26, 85

               
               
               Conread position:183-668
               
               
               Cow position:chr15:18577811-18578307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:318
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):52, 25

               
               
               Conread position:183-668
               
               
               Cow position:chr15:24288377-24287879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 10

               
               
               Conread position:183-668
               
               
               Cow position:chr15:26156931-26157427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 147

               
               
               Conread position:183-668
               
               
               Cow position:chr15:32492790-32492288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:328
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):26, 109

               
               
               Conread position:183-668
               
               
               Cow position:chr15:35646585-35646097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:314
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):29, 90

               
               
               Conread position:183-670
               
               
               Cow position:chr15:3181966-3181474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:324
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):29, 88

               
               
               Conread position:184-663
               
               
               Cow position:chr15:6479484-6479981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:322
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):51, 126

               
               
               Conread position:185-380
               
               
               Cow position:chr15:32479498-32479292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:185-381
               
               
               Cow position:chr15:41219918-41219721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):27, 57

               
               
               Conread position:185-402
               
               
               Cow position:chr15:36668805-36669031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):24, 216

               
               
               Conread position:185-414
               
               
               Cow position:chr15:6383053-6382822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):50, 22

               
               
               Conread position:185-415
               
               
               Cow position:chr15:580527-580756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):48, 203

               
               
               Conread position:185-668
               
               
               Cow position:chr15:2077752-2078240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:320
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):50, 136

               
               
               Conread position:186-414
               
               
               Cow position:chr15:7939538-7939775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):28, 159

               
               
               Conread position:188-378
               
               
               Cow position:chr15:44301999-44301804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):13, 7

               
               
               Conread position:188-403
               
               
               Cow position:chr15:4679389-4679605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):38, 142

               
               
               Conread position:188-638
               
               
               Cow position:chr15:13390219-13389764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 327

               
               
               Conread position:188-652
               
               
               Cow position:chr15:32719565-32719098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:295
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):51, 19

               
               
               Conread position:197-408
               
               
               Cow position:chr15:17217032-17216816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):15, 20

               
               
               Conread position:203-668
               
               
               Cow position:chr15:4813712-4814183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:311
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):181, 41

               
               
               Conread position:204-668
               
               
               Cow position:chr15:6590991-6590520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 120

               
               
               Conread position:204-668
               
               
               Cow position:chr15:8100591-8101043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:306
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):245, 30

               
               
               Conread position:205-384
               
               
               Cow position:chr15:1773623-1773808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:205-384
               
               
               Cow position:chr15:6079865-6080051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:205-668
               
               
               Cow position:chr15:3890031-3890498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 276

               
               
               Conread position:208-670
               
               
               Cow position:chr15:53339357-53339816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:301
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):137, 24

               
               
               Conread position:230-380
               
               
               Cow position:chr15:1879093-1878943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:231-382
               
               
               Cow position:chr15:1238840-1238991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):36, 26

               
               
               Conread position:231-509
               
               
               Cow position:chr15:4927525-4927792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):22, 13

               
               
               Conread position:232-583
               
               
               Cow position:chr15:28488996-28488648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):158, 21

               
               
               Conread position:234-407
               
               
               Cow position:chr15:10478367-10478198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):147, 77

               
               
               Conread position:236-431
               
               
               Cow position:chr15:4766351-4766549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):98, 93

               
               
               Conread position:236-664
               
               
               Cow position:chr15:7235485-7235910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:274
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):154, 172

               
               
               Conread position:241-402
               
               
               Cow position:chr15:53313863-53314025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):143, 153

               
               
               Conread position:320-672
               
               
               Cow position:chr15:29342768-29342417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:247
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):69, 78

               
               
               Conread position:433-668
               
               
               Cow position:chr15:32712572-32712802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):154, 51

               
               
               Conread position:434-670
               
               
               Cow position:chr15:4860534-4860772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):62, 174

               
               
               Conread position:434-670
               
               
               Cow position:chr15:9431273-9431531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:486-668
               
               
               Cow position:chr15:17397155-17397339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):101, 10

               
               
               Conread position:505-668
               
               
               Cow position:chr15:5010204-5010033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr15:107432-107593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr15:4947936-4948096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr15:16190340-16190179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr15:20355170-20355011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):78, 128

               
               
               Conread position:508-665
               
               
               Cow position:chr15:38982094-38982255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr15:4080804-4080641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):77, 93

               
               
               Conread position:508-668
               
               
               Cow position:chr15:4198192-4198357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr15:6614450-6614614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr15:8810886-8810722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr15:17075997-17075833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr15:36624212-36624057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr15:42319384-42319220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr15:50148763-50148927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr15:51219177-51219341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-669
               
               
               Cow position:chr15:6329472-6329638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:508-670
               
               
               Cow position:chr15:24041698-24041864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-670
               
               
               Cow position:chr15:51912149-51911983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:509-663
               
               
               Cow position:chr15:12419274-12419117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:509-665
               
               
               Cow position:chr15:1878665-1878505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:509-668
               
               
               Cow position:chr15:32067177-32067013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:510-665
               
               
               Cow position:chr15:8059400-8059558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):21, 28

               
               
               Conread position:511-670
               
               
               Cow position:chr15:2213078-2212916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):74, 85

               
               
               Conread position:511-670
               
               
               Cow position:chr15:11293005-11292842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:514-665
               
               
               Cow position:chr15:23667396-23667241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:515-668
               
               
               Cow position:chr15:24296629-24296787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:537-668
               
               
               Cow position:chr15:36144067-36144202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:542-668
               
               
               Cow position:chr15:36330996-36330865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:156-380
               
               
               Cow position:chr16:56120388-56120618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):15, 24

               
               
               Conread position:157-668
               
               
               Cow position:chr16:54324602-54324076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:537
               
               
               Alignm identity:351
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):14, 27

               
               
               Conread position:160-377
               
               
               Cow position:chr16:10565042-10564824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):47, 110

               
               
               Conread position:160-668
               
               
               Cow position:chr16:23535158-23534662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:326
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):11, 20

               
               
               Conread position:160-668
               
               
               Cow position:chr16:25086353-25086864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:320
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):7, 63

               
               
               Conread position:160-668
               
               
               Cow position:chr16:28470334-28469808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:338
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):7, 24

               
               
               Conread position:166-657
               
               
               Cow position:chr16:12668045-12667536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:334
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):16, 62

               
               
               Conread position:166-665
               
               
               Cow position:chr16:25258536-25259052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:344
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):19, 102

               
               
               Conread position:166-668
               
               
               Cow position:chr16:23671441-23671949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 16

               
               
               Conread position:166-670
               
               
               Cow position:chr16:47627912-47627409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:343
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):16, 228

               
               
               Conread position:169-415
               
               
               Cow position:chr16:44669654-44669397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):13, 232

               
               
               Conread position:169-665
               
               
               Cow position:chr16:27594253-27594757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 243

               
               
               Conread position:169-668
               
               
               Cow position:chr16:25442367-25442878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:333
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):40, 19

               
               
               Conread position:170-384
               
               
               Cow position:chr16:28196494-28196275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:170-414
               
               
               Cow position:chr16:5527641-5527389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):65, 23

               
               
               Conread position:170-414
               
               
               Cow position:chr16:10374849-10374605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):49, 94

               
               
               Conread position:170-653
               
               
               Cow position:chr16:19778902-19778413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 246

               
               
               Conread position:170-664
               
               
               Cow position:chr16:15185825-15186321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:327
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):17, 165

               
               
               Conread position:170-668
               
               
               Cow position:chr16:3088457-3087951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 322

               
               
               Conread position:170-668
               
               
               Cow position:chr16:5662586-5663092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 288

               
               
               Conread position:170-668
               
               
               Cow position:chr16:8815358-8814858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:337
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):39, 17

               
               
               Conread position:170-668
               
               
               Cow position:chr16:14665066-14664573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:323
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):39, 30

               
               
               Conread position:170-668
               
               
               Cow position:chr16:23984047-23984555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:333
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):17, 13

               
               
               Conread position:170-668
               
               
               Cow position:chr16:37480109-37479603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 164

               
               
               Conread position:171-402
               
               
               Cow position:chr16:19149846-19149617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):34, 64

               
               
               Conread position:171-402
               
               
               Cow position:chr16:55049151-55048922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):30, 44

               
               
               Conread position:171-670
               
               
               Cow position:chr16:3330684-3331185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:319
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):39, 17

               
               
               Conread position:172-385
               
               
               Cow position:chr16:23809103-23809321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):29, 113

               
               
               Conread position:172-668
               
               
               Cow position:chr16:2238015-2237519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:331
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):54, 41

               
               
               Conread position:173-380
               
               
               Cow position:chr16:39366127-39365914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):20, 11

               
               
               Conread position:173-665
               
               
               Cow position:chr16:29047774-29048273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:334
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):56, 14

               
               
               Conread position:173-670
               
               
               Cow position:chr16:41753865-41753359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 250

               
               
               Conread position:174-384
               
               
               Cow position:chr16:29034686-29034904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:176-378
               
               
               Cow position:chr16:28436715-28436502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:177-665
               
               
               Cow position:chr16:34531047-34531537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:322
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):24, 18

               
               
               Conread position:177-668
               
               
               Cow position:chr16:33274-33784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 276

               
               
               Conread position:179-668
               
               
               Cow position:chr16:15568011-15568506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:319
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):8, 145

               
               
               Conread position:183-396
               
               
               Cow position:chr16:26978876-26979091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):46, 30

               
               
               Conread position:183-400
               
               
               Cow position:chr16:1959864-1959639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):26, 217

               
               
               Conread position:183-401
               
               
               Cow position:chr16:41762577-41762802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):53, 161

               
               
               Conread position:183-403
               
               
               Cow position:chr16:39824676-39824906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:182
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):29, 160

               
               
               Conread position:183-424
               
               
               Cow position:chr16:34504299-34504548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):47, 12

               
               
               Conread position:183-480
               
               
               Cow position:chr16:16898210-16898519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):10, 218

               
               
               Conread position:183-664
               
               
               Cow position:chr16:27732631-27732130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:324
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):26, 160

               
               
               Conread position:183-665
               
               
               Cow position:chr16:7675698-7675213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:318
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):23, 43

               
               
               Conread position:183-668
               
               
               Cow position:chr16:40295410-40294913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:325
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):26, 104

               
               
               Conread position:183-670
               
               
               Cow position:chr16:337941-338428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:333
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):24, 91

               
               
               Conread position:185-668
               
               
               Cow position:chr16:27823493-27823003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:326
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):17, 191

               
               
               Conread position:185-668
               
               
               Cow position:chr16:41572147-41572653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 8

               
               
               Conread position:185-668
               
               
               Cow position:chr16:49221148-49220666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:311
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):41, 84

               
               
               Conread position:185-668
               
               
               Cow position:chr16:51084910-51085404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:318
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):24, 222

               
               
               Conread position:186-436
               
               
               Cow position:chr16:25172113-25172366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):32, 17

               
               
               Conread position:186-665
               
               
               Cow position:chr16:5119256-5118769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 213

               
               
               Conread position:188-506
               
               
               Cow position:chr16:28158331-28158647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:217
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):43, 78

               
               
               Conread position:188-665
               
               
               Cow position:chr16:41685492-41685017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:309
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):67, 44

               
               
               Conread position:200-668
               
               
               Cow position:chr16:18497544-18497064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:316
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):34, 15

               
               
               Conread position:204-400
               
               
               Cow position:chr16:16270347-16270153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):186, 9

               
               
               Conread position:204-430
               
               
               Cow position:chr16:12955769-12955543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):35, 165

               
               
               Conread position:204-505
               
               
               Cow position:chr16:29984797-29985103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:208
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):31, 167

               
               
               Conread position:204-610
               
               
               Cow position:chr16:25933968-25934376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:266
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):25, 62

               
               
               Conread position:204-668
               
               
               Cow position:chr16:20202760-20203225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:306
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):122, 9

               
               
               Conread position:204-670
               
               
               Cow position:chr16:5890788-5891252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:301
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):180, 23

               
               
               Conread position:209-389
               
               
               Cow position:chr16:49255445-49255264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):26, 160

               
               
               Conread position:218-414
               
               
               Cow position:chr16:48333793-48333597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):28, 14

               
               
               Conread position:220-668
               
               
               Cow position:chr16:3828535-3828081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:301
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):160, 14

               
               
               Conread position:232-378
               
               
               Cow position:chr16:16991662-16991808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:234-494
               
               
               Cow position:chr16:5871703-5871947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):152, 0

               
               
               Conread position:236-668
               
               
               Cow position:chr16:28169504-28169069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:284
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):154, 170

               
               
               Conread position:252-665
               
               
               Cow position:chr16:20193338-20192925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:271
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):134, 154

               
               
               Conread position:272-661
               
               
               Cow position:chr16:4474752-4474356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:259
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):68, 57

               
               
               Conread position:277-672
               
               
               Cow position:chr16:7465463-7465862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:260
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):21, 128

               
               
               Conread position:289-661
               
               
               Cow position:chr16:51039207-51039586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 75

               
               
               Conread position:306-670
               
               
               Cow position:chr16:17949364-17948996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):84, 99

               
               
               Conread position:447-668
               
               
               Cow position:chr16:23250974-23250731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:448-670
               
               
               Cow position:chr16:7379622-7379391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):59, 121

               
               
               Conread position:503-668
               
               
               Cow position:chr16:25343055-25343222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):89, 6

               
               
               Conread position:508-665
               
               
               Cow position:chr16:18580921-18580760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr16:20200215-20200377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr16:1959537-1959375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):80, 92

               
               
               Conread position:508-668
               
               
               Cow position:chr16:20641269-20641435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr16:22800584-22800423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr16:26664815-26664979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr16:28158670-28158834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr16:28195217-28195054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):79, 93

               
               
               Conread position:508-668
               
               
               Cow position:chr16:28436039-28435877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):79, 103

               
               
               Conread position:508-668
               
               
               Cow position:chr16:29034988-29035152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr16:40556824-40556664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr16:41162381-41162218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr16:42747131-42746970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):79, 126

               
               
               Conread position:508-668
               
               
               Cow position:chr16:43896175-43896016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr16:44669036-44668867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr16:49744356-49744192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr16:52525318-52525480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):84, 39

               
               
               Conread position:508-670
               
               
               Cow position:chr16:16229395-16229556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:508-672
               
               
               Cow position:chr16:3770928-3770761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):84, 163

               
               
               Conread position:509-665
               
               
               Cow position:chr16:5486850-5487001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:511-665
               
               
               Cow position:chr16:18618034-18617877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):76, 8

               
               
               Conread position:511-670
               
               
               Cow position:chr16:37451981-37451820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:513-672
               
               
               Cow position:chr16:25172391-25172547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):74, 91

               
               
               Conread position:515-665
               
               
               Cow position:chr16:18279460-18279306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:515-668
               
               
               Cow position:chr16:23809454-23809612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:160-384
               
               
               Cow position:chr17:3654979-3654749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:160-405
               
               
               Cow position:chr17:15437094-15437346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:160-663
               
               
               Cow position:chr17:4061414-4061933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:329
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):11, 197

               
               
               Conread position:160-668
               
               
               Cow position:chr17:15852003-15852520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:334
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):7, 24

               
               
               Conread position:160-668
               
               
               Cow position:chr17:23323138-23322621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 263

               
               
               Conread position:160-668
               
               
               Cow position:chr17:24028690-24028178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:338
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):7, 20

               
               
               Conread position:160-668
               
               
               Cow position:chr17:27793471-27792959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 295

               
               
               Conread position:169-663
               
               
               Cow position:chr17:15372530-15373021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:319
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):16, 39

               
               
               Conread position:169-668
               
               
               Cow position:chr17:182896-183398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:324
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):51, 14

               
               
               Conread position:170-384
               
               
               Cow position:chr17:1704191-1704411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:170-384
               
               
               Cow position:chr17:9080099-9079880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:170-662
               
               
               Cow position:chr17:13967248-13967745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:319
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):51, 169

               
               
               Conread position:170-665
               
               
               Cow position:chr17:14936649-14936149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 27

               
               
               Conread position:170-665
               
               
               Cow position:chr17:39049536-39050041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 249

               
               
               Conread position:170-665
               
               
               Cow position:chr17:43989823-43990320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 288

               
               
               Conread position:170-668
               
               
               Cow position:chr17:28027185-28026680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:333
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):7, 166

               
               
               Conread position:170-668
               
               
               Cow position:chr17:40806130-40806633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:329
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):62, 13

               
               
               Conread position:171-583
               
               
               Cow position:chr17:11086404-11085989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:263
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):58, 14

               
               
               Conread position:171-603
               
               
               Cow position:chr17:34157444-34157882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:288
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):49, 251

               
               
               Conread position:172-665
               
               
               Cow position:chr17:11784181-11784691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:333
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):48, 295

               
               
               Conread position:180-504
               
               
               Cow position:chr17:4675429-4675752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:233
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):12, 216

               
               
               Conread position:183-378
               
               
               Cow position:chr17:23038893-23039097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):26, 5

               
               
               Conread position:183-414
               
               
               Cow position:chr17:6261186-6261430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):26, 145

               
               
               Conread position:183-414
               
               
               Cow position:chr17:14240830-14241076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:183-668
               
               
               Cow position:chr17:2246756-2246262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 24

               
               
               Conread position:183-668
               
               
               Cow position:chr17:24783487-24783988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 282

               
               
               Conread position:185-402
               
               
               Cow position:chr17:1656536-1656323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):199, 8

               
               
               Conread position:185-414
               
               
               Cow position:chr17:3707459-3707225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):10, 189

               
               
               Conread position:185-607
               
               
               Cow position:chr17:2263465-2263905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:291
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):8, 247

               
               
               Conread position:185-663
               
               
               Cow position:chr17:24310179-24310653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:312
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):50, 71

               
               
               Conread position:189-431
               
               
               Cow position:chr17:24335896-24336142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):40, 74

               
               
               Conread position:193-665
               
               
               Cow position:chr17:2169764-2170245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 123

               
               
               Conread position:204-665
               
               
               Cow position:chr17:6121148-6121610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 12

               
               
               Conread position:205-372
               
               
               Cow position:chr17:14039684-14039509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):28, 81

               
               
               Conread position:205-652
               
               
               Cow position:chr17:29302107-29302568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:308
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):28, 259

               
               
               Conread position:205-668
               
               
               Cow position:chr17:135981-136453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:304
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):34, 132

               
               
               Conread position:205-668
               
               
               Cow position:chr17:19267484-19267017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:304
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):25, 55

               
               
               Conread position:216-414
               
               
               Cow position:chr17:39812-40011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):170, 0

               
               
               Conread position:231-657
               
               
               Cow position:chr17:4783432-4782998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):277, 16

               
               
               Conread position:231-668
               
               
               Cow position:chr17:20403807-20404231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:279
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):178, 218

               
               
               Conread position:232-403
               
               
               Cow position:chr17:22133653-22133826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):46, 87

               
               
               Conread position:236-384
               
               
               Cow position:chr17:17257298-17257150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:254-665
               
               
               Cow position:chr17:2554865-2554451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:273
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):125, 140

               
               
               Conread position:280-425
               
               
               Cow position:chr17:19366694-19366840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:402-668
               
               
               Cow position:chr17:19980601-19980312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:426-663
               
               
               Cow position:chr17:1656185-1655937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):77, 51

               
               
               Conread position:429-670
               
               
               Cow position:chr17:13706322-13706563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):70, 17

               
               
               Conread position:433-668
               
               
               Cow position:chr17:6070110-6070356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:434-670
               
               
               Cow position:chr17:4346011-4345764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):71, 98

               
               
               Conread position:449-668
               
               
               Cow position:chr17:21769605-21769380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:469-665
               
               
               Cow position:chr17:3235562-3235765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):25, 131

               
               
               Conread position:508-655
               
               
               Cow position:chr17:17257027-17256876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr17:40103-40264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr17:6077768-6077923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr17:8210304-8210465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr17:16153470-16153632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr17:34574406-34574567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr17:45271456-45271295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr17:2581492-2581656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr17:6261522-6261675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr17:14241469-14241632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr17:34159389-34159555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:508-669
               
               
               Cow position:chr17:19366937-19367101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:508-670
               
               
               Cow position:chr17:1458042-1458208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:509-665
               
               
               Cow position:chr17:15326945-15327101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:510-652
               
               
               Cow position:chr17:33284027-33283879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:510-668
               
               
               Cow position:chr17:15686071-15686232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):77, 10

               
               
               Conread position:510-670
               
               
               Cow position:chr17:4676001-4676168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:511-670
               
               
               Cow position:chr17:20080230-20080070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:514-668
               
               
               Cow position:chr17:2031898-2032057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:515-665
               
               
               Cow position:chr17:20232408-20232561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:515-668
               
               
               Cow position:chr17:14896621-14896778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:516-665
               
               
               Cow position:chr17:16120935-16120788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):70, 31

               
               
               Conread position:522-665
               
               
               Cow position:chr17:36283697-36283844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:160-636
               
               
               Cow position:chr18:19485661-19486148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:314
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):7, 20

               
               
               Conread position:169-384
               
               
               Cow position:chr18:51461522-51461302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:169-668
               
               
               Cow position:chr18:27988715-27989221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:329
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):63, 18

               
               
               Conread position:169-670
               
               
               Cow position:chr18:35373246-35372735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:341
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):16, 239

               
               
               Conread position:169-670
               
               
               Cow position:chr18:37490349-37490858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:338
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):22, 106

               
               
               Conread position:170-384
               
               
               Cow position:chr18:26245093-26244874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:170-384
               
               
               Cow position:chr18:27538392-27538611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:170-414
               
               
               Cow position:chr18:51695231-51695481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:170-431
               
               
               Cow position:chr18:36510146-36510413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):17, 13

               
               
               Conread position:170-583
               
               
               Cow position:chr18:51343212-51343629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:264
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):50, 241

               
               
               Conread position:170-668
               
               
               Cow position:chr18:5534540-5535042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:322
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):59, 13

               
               
               Conread position:170-668
               
               
               Cow position:chr18:14417498-14418004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:323
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):59, 13

               
               
               Conread position:170-668
               
               
               Cow position:chr18:19353896-19354402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 249

               
               
               Conread position:170-668
               
               
               Cow position:chr18:37507490-37507997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:331
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):26, 92

               
               
               Conread position:174-672
               
               
               Cow position:chr18:4947478-4947981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:336
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):11, 125

               
               
               Conread position:183-378
               
               
               Cow position:chr18:18852126-18852334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):29, 84

               
               
               Conread position:183-668
               
               
               Cow position:chr18:24617671-24618168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 24

               
               
               Conread position:183-668
               
               
               Cow position:chr18:29865077-29864576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:331
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):29, 160

               
               
               Conread position:183-668
               
               
               Cow position:chr18:41839272-41838755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:342
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):52, 99

               
               
               Conread position:183-669
               
               
               Cow position:chr18:15856747-15857221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:318
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):33, 125

               
               
               Conread position:183-669
               
               
               Cow position:chr18:51274547-51274049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 272

               
               
               Conread position:183-670
               
               
               Cow position:chr18:16392562-16392087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 32

               
               
               Conread position:184-668
               
               
               Cow position:chr18:16175083-16174586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 156

               
               
               Conread position:185-362
               
               
               Cow position:chr18:38342757-38342578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):44, 76

               
               
               Conread position:185-399
               
               
               Cow position:chr18:42516174-42516394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:190-427
               
               
               Cow position:chr18:12237733-12237969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):34, 22

               
               
               Conread position:204-402
               
               
               Cow position:chr18:35054699-35054891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):69, 23

               
               
               Conread position:232-377
               
               
               Cow position:chr18:29074529-29074674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:238-668
               
               
               Cow position:chr18:14131993-14132425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:287
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):102, 75

               
               
               Conread position:238-668
               
               
               Cow position:chr18:40482599-40483031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:282
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):96, 91

               
               
               Conread position:246-668
               
               
               Cow position:chr18:32166313-32165894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:277
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):144, 162

               
               
               Conread position:246-672
               
               
               Cow position:chr18:11273247-11272819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 148

               
               
               Conread position:247-579
               
               
               Cow position:chr18:48469569-48469239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):137, 146

               
               
               Conread position:272-665
               
               
               Cow position:chr18:52654452-52654842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:248
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):118, 186

               
               
               Conread position:293-665
               
               
               Cow position:chr18:23660844-23660467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:245
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):101, 120

               
               
               Conread position:413-668
               
               
               Cow position:chr18:44183485-44183217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:428-670
               
               
               Cow position:chr18:5078326-5078065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):77, 162

               
               
               Conread position:508-657
               
               
               Cow position:chr18:51695849-51696003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr18:9722495-9722656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr18:22183653-22183493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):79, 93

               
               
               Conread position:508-665
               
               
               Cow position:chr18:33270770-33270928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr18:37584036-37583875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr18:37701621-37701460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr18:6883296-6883130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr18:16464990-16464826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr18:23703216-23703052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr18:25922262-25922421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr18:36510488-36510652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr18:47743362-47743526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr18:51460974-51460809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr18:51482725-51482889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-670
               
               
               Cow position:chr18:1046147-1046310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):146, 0

               
               
               Conread position:508-670
               
               
               Cow position:chr18:35290523-35290688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):81, 14

               
               
               Conread position:512-652
               
               
               Cow position:chr18:46875494-46875350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:512-665
               
               
               Cow position:chr18:16136806-16136649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:512-668
               
               
               Cow position:chr18:54106980-54107140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:514-672
               
               
               Cow position:chr18:40344519-40344356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):73, 134

               
               
               Conread position:516-668
               
               
               Cow position:chr18:44149518-44149362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:160-668
               
               
               Cow position:chr19:7343593-7344106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:334
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):11, 24

               
               
               Conread position:166-402
               
               
               Cow position:chr19:35107269-35107023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):29, 18

               
               
               Conread position:169-668
               
               
               Cow position:chr19:39667019-39666515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 231

               
               
               Conread position:169-668
               
               
               Cow position:chr19:52150159-52149642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 252

               
               
               Conread position:170-367
               
               
               Cow position:chr19:32210541-32210339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:170-384
               
               
               Cow position:chr19:20106260-20106479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:170-665
               
               
               Cow position:chr19:16319095-16318577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:330
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):50, 241

               
               
               Conread position:170-668
               
               
               Cow position:chr19:774138-774644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:325
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):50, 225

               
               
               Conread position:170-668
               
               
               Cow position:chr19:2272579-2272080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:328
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):62, 25

               
               
               Conread position:170-668
               
               
               Cow position:chr19:5899975-5899470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 285

               
               
               Conread position:170-668
               
               
               Cow position:chr19:33874949-33875451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 13

               
               
               Conread position:170-668
               
               
               Cow position:chr19:40850925-40850445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:322
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):62, 17

               
               
               Conread position:173-414
               
               
               Cow position:chr19:40471162-40470915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:185
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):27, 69

               
               
               Conread position:183-378
               
               
               Cow position:chr19:39835-40042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):24, 192

               
               
               Conread position:183-668
               
               
               Cow position:chr19:33943105-33943607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:326
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):26, 239

               
               
               Conread position:183-668
               
               
               Cow position:chr19:39184007-39183504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 160

               
               
               Conread position:184-661
               
               
               Cow position:chr19:35384078-35383594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:353
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):55, 200

               
               
               Conread position:184-665
               
               
               Cow position:chr19:30756756-30757266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:339
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):26, 153

               
               
               Conread position:185-367
               
               
               Cow position:chr19:23400687-23400505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):54, 30

               
               
               Conread position:185-377
               
               
               Cow position:chr19:27036088-27035899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):50, 22

               
               
               Conread position:185-506
               
               
               Cow position:chr19:28367485-28367798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:218
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):46, 206

               
               
               Conread position:185-617
               
               
               Cow position:chr19:28405172-28404749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:284
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):13, 23

               
               
               Conread position:185-665
               
               
               Cow position:chr19:48860219-48859726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 215

               
               
               Conread position:188-664
               
               
               Cow position:chr19:5730396-5730876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:341
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):24, 55

               
               
               Conread position:188-665
               
               
               Cow position:chr19:4387153-4387634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:315
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):21, 41

               
               
               Conread position:188-668
               
               
               Cow position:chr19:1660212-1660708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 337

               
               
               Conread position:190-668
               
               
               Cow position:chr19:2586755-2587259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 129

               
               
               Conread position:230-504
               
               
               Cow position:chr19:16128754-16129017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):15, 110

               
               
               Conread position:231-665
               
               
               Cow position:chr19:30559787-30560217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:281
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):155, 163

               
               
               Conread position:232-432
               
               
               Cow position:chr19:33596167-33595967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):141, 134

               
               
               Conread position:234-430
               
               
               Cow position:chr19:1587634-1587436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):141, 60

               
               
               Conread position:234-663
               
               
               Cow position:chr19:9706571-9706148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):262, 79

               
               
               Conread position:241-403
               
               
               Cow position:chr19:14159552-14159391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):148, 27

               
               
               Conread position:266-668
               
               
               Cow position:chr19:30453719-30453312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:268
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):138, 10

               
               
               Conread position:279-509
               
               
               Cow position:chr19:11900359-11900582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:179
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):107, 129

               
               
               Conread position:307-670
               
               
               Cow position:chr19:33596110-33595749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):37, 28

               
               
               Conread position:324-668
               
               
               Cow position:chr19:33904760-33905097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):164, 64

               
               
               Conread position:508-668
               
               
               Cow position:chr19:437467-437301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr19:15445988-15445824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr19:20106602-20106761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):84, 97

               
               
               Conread position:508-668
               
               
               Cow position:chr19:21338971-21338808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr19:22511899-22511735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr19:23400374-23400219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr19:28579790-28579635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr19:39392385-39392550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:509-668
               
               
               Cow position:chr19:891762-891599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:516-668
               
               
               Cow position:chr19:28796328-28796172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:534-668
               
               
               Cow position:chr19:16129268-16129407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:160-402
               
               
               Cow position:chr2:44650222-44650462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):75, 25

               
               
               Conread position:160-408
               
               
               Cow position:chr2:36277450-36277207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):45, 62

               
               
               Conread position:160-429
               
               
               Cow position:chr2:20872519-20872252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):13, 24

               
               
               Conread position:160-664
               
               
               Cow position:chr2:10610679-10610163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:329
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):11, 249

               
               
               Conread position:160-665
               
               
               Cow position:chr2:45938730-45938221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 20

               
               
               Conread position:160-665
               
               
               Cow position:chr2:80291797-80291288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:323
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):11, 163

               
               
               Conread position:160-668
               
               
               Cow position:chr2:4402184-4401668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 209

               
               
               Conread position:160-668
               
               
               Cow position:chr2:10731896-10731384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:336
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):11, 240

               
               
               Conread position:162-373
               
               
               Cow position:chr2:6880348-6880554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):171, 23

               
               
               Conread position:165-668
               
               
               Cow position:chr2:73193934-73194443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:335
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):7, 169

               
               
               Conread position:169-388
               
               
               Cow position:chr2:288818-288586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:169-414
               
               
               Cow position:chr2:16074559-16074313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):57, 14

               
               
               Conread position:169-668
               
               
               Cow position:chr2:6005879-6005366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:338
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):16, 109

               
               
               Conread position:170-370
               
               
               Cow position:chr2:51988811-51988607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):50, 201

               
               
               Conread position:170-379
               
               
               Cow position:chr2:2411805-2411596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):50, 92

               
               
               Conread position:170-384
               
               
               Cow position:chr2:51618237-51618459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):17, 178

               
               
               Conread position:170-384
               
               
               Cow position:chr2:52617453-52617671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):50, 201

               
               
               Conread position:170-400
               
               
               Cow position:chr2:25887572-25887336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):17, 13

               
               
               Conread position:170-403
               
               
               Cow position:chr2:42361295-42361054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):59, 22

               
               
               Conread position:170-407
               
               
               Cow position:chr2:3323588-3323345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):50, 229

               
               
               Conread position:170-414
               
               
               Cow position:chr2:57336523-57336773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):49, 13

               
               
               Conread position:170-432
               
               
               Cow position:chr2:16901234-16901499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):62, 13

               
               
               Conread position:170-662
               
               
               Cow position:chr2:5903364-5902874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:326
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):39, 138

               
               
               Conread position:170-665
               
               
               Cow position:chr2:26922404-26922906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 286

               
               
               Conread position:170-668
               
               
               Cow position:chr2:8119521-8120025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:334
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):17, 9

               
               
               Conread position:170-668
               
               
               Cow position:chr2:9908891-9909406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:170-668
               
               
               Cow position:chr2:11158142-11157639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:323
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):65, 13

               
               
               Conread position:170-668
               
               
               Cow position:chr2:12223300-12222800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 17

               
               
               Conread position:170-668
               
               
               Cow position:chr2:12696490-12695984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 319

               
               
               Conread position:170-668
               
               
               Cow position:chr2:14209846-14209340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 241

               
               
               Conread position:170-668
               
               
               Cow position:chr2:25028325-25027824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:331
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):50, 23

               
               
               Conread position:170-668
               
               
               Cow position:chr2:28648631-28648126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:321
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):39, 9

               
               
               Conread position:170-668
               
               
               Cow position:chr2:32065060-32064567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:328
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):39, 17

               
               
               Conread position:170-668
               
               
               Cow position:chr2:39422602-39423106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 245

               
               
               Conread position:170-668
               
               
               Cow position:chr2:41048046-41047546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 9

               
               
               Conread position:170-668
               
               
               Cow position:chr2:52063737-52064238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:326
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):17, 13

               
               
               Conread position:170-668
               
               
               Cow position:chr2:53330771-53331280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:528
               
               
               Alignm identity:357
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):17, 13

               
               
               Conread position:170-668
               
               
               Cow position:chr2:65937255-65936745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:338
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):7, 26

               
               
               Conread position:170-668
               
               
               Cow position:chr2:81258154-81258660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:327
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):17, 13

               
               
               Conread position:171-403
               
               
               Cow position:chr2:15575877-15575631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):50, 36

               
               
               Conread position:171-411
               
               
               Cow position:chr2:78743542-78743783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):44, 123

               
               
               Conread position:171-668
               
               
               Cow position:chr2:47037455-47036949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 248

               
               
               Conread position:171-668
               
               
               Cow position:chr2:72688586-72689092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:329
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):49, 29

               
               
               Conread position:171-670
               
               
               Cow position:chr2:32434346-32433845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 21

               
               
               Conread position:172-668
               
               
               Cow position:chr2:22078882-22079380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:338
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):57, 164

               
               
               Conread position:173-669
               
               
               Cow position:chr2:42331905-42331374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:346
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):53, 27

               
               
               Conread position:174-582
               
               
               Cow position:chr2:54693920-54694329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:276
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):12, 108

               
               
               Conread position:176-376
               
               
               Cow position:chr2:51397998-51397784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):8, 192

               
               
               Conread position:176-380
               
               
               Cow position:chr2:47526387-47526175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):36, 52

               
               
               Conread position:176-583
               
               
               Cow position:chr2:37789036-37788630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:281
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):7, 172

               
               
               Conread position:180-665
               
               
               Cow position:chr2:14824025-14824508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:329
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):29, 142

               
               
               Conread position:180-665
               
               
               Cow position:chr2:50078547-50079038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:323
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):29, 8

               
               
               Conread position:180-669
               
               
               Cow position:chr2:85081958-85081469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:322
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):48, 104

               
               
               Conread position:182-665
               
               
               Cow position:chr2:11558838-11559329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 237

               
               
               Conread position:183-335
               
               
               Cow position:chr2:81504251-81504415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:183-360
               
               
               Cow position:chr2:34473614-34473424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:183-379
               
               
               Cow position:chr2:364086-363877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:183-415
               
               
               Cow position:chr2:11693460-11693702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 176

               
               
               Conread position:183-503
               
               
               Cow position:chr2:45967051-45966725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 161

               
               
               Conread position:183-668
               
               
               Cow position:chr2:281703-281203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:326
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):29, 146

               
               
               Conread position:183-668
               
               
               Cow position:chr2:9958092-9957590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 288

               
               
               Conread position:183-668
               
               
               Cow position:chr2:24926399-24926897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:324
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):26, 5

               
               
               Conread position:183-668
               
               
               Cow position:chr2:36052050-36051535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:339
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):50, 24

               
               
               Conread position:183-668
               
               
               Cow position:chr2:36981370-36981867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:326
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):26, 160

               
               
               Conread position:183-668
               
               
               Cow position:chr2:41687749-41688254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:331
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):26, 195

               
               
               Conread position:183-668
               
               
               Cow position:chr2:45915858-45915363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 86

               
               
               Conread position:183-670
               
               
               Cow position:chr2:19225857-19226342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 227

               
               
               Conread position:184-384
               
               
               Cow position:chr2:53540917-53541131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:184-402
               
               
               Cow position:chr2:36976070-36976297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):28, 191

               
               
               Conread position:184-411
               
               
               Cow position:chr2:44934003-44933765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):25, 10

               
               
               Conread position:185-382
               
               
               Cow position:chr2:64768204-64767998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):46, 183

               
               
               Conread position:185-505
               
               
               Cow position:chr2:32458079-32457765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):27, 8

               
               
               Conread position:185-655
               
               
               Cow position:chr2:41181099-41181570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 90

               
               
               Conread position:185-664
               
               
               Cow position:chr2:10185245-10184748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:323
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):24, 158

               
               
               Conread position:185-668
               
               
               Cow position:chr2:6674213-6674712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 233

               
               
               Conread position:185-668
               
               
               Cow position:chr2:50982160-50981666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:324
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):24, 8

               
               
               Conread position:189-380
               
               
               Cow position:chr2:72681138-72680944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:190-506
               
               
               Cow position:chr2:905257-905558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):41, 120

               
               
               Conread position:203-665
               
               
               Cow position:chr2:13553579-13554057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:317
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):7, 251

               
               
               Conread position:204-377
               
               
               Cow position:chr2:72906200-72906026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):8, 90

               
               
               Conread position:204-403
               
               
               Cow position:chr2:12362967-12362766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):55, 23

               
               
               Conread position:204-506
               
               
               Cow position:chr2:53555511-53555799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:209
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:204-622
               
               
               Cow position:chr2:174548-174130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:267
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):193, 9

               
               
               Conread position:205-380
               
               
               Cow position:chr2:9189020-9188842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:230-583
               
               
               Cow position:chr2:34594926-34594591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:230
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):156, 25

               
               
               Conread position:230-654
               
               
               Cow position:chr2:32656683-32657101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:274
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):179, 21

               
               
               Conread position:230-665
               
               
               Cow position:chr2:62729553-62729991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:293
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):160, 48

               
               
               Conread position:232-668
               
               
               Cow position:chr2:574634-575067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:286
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):158, 182

               
               
               Conread position:232-668
               
               
               Cow position:chr2:2206777-2206321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:299
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):81, 108

               
               
               Conread position:234-670
               
               
               Cow position:chr2:780362-779922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:281
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):148, 159

               
               
               Conread position:234-670
               
               
               Cow position:chr2:18242858-18242419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:279
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):158, 138

               
               
               Conread position:236-403
               
               
               Cow position:chr2:16291734-16291902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):154, 0

               
               
               Conread position:236-668
               
               
               Cow position:chr2:2087121-2086687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 243

               
               
               Conread position:236-668
               
               
               Cow position:chr2:54738536-54738965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 156

               
               
               Conread position:238-665
               
               
               Cow position:chr2:47811901-47812330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:286
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):102, 40

               
               
               Conread position:262-414
               
               
               Cow position:chr2:210968-210815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:275-668
               
               
               Cow position:chr2:2601791-2602182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:258
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):137, 36

               
               
               Conread position:277-668
               
               
               Cow position:chr2:975597-975200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:255
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):63, 52

               
               
               Conread position:278-503
               
               
               Cow position:chr2:20898925-20898708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):94, 37

               
               
               Conread position:281-670
               
               
               Cow position:chr2:60367678-60367287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:293
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):215, 48

               
               
               Conread position:283-668
               
               
               Cow position:chr2:45677588-45677968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):104, 112

               
               
               Conread position:284-662
               
               
               Cow position:chr2:49631812-49632224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:289
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):96, 180

               
               
               Conread position:304-670
               
               
               Cow position:chr2:50405114-50405479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):281, 0

               
               
               Conread position:312-670
               
               
               Cow position:chr2:10131703-10131326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:262
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):77, 46

               
               
               Conread position:422-668
               
               
               Cow position:chr2:1198539-1198299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):62, 70

               
               
               Conread position:428-665
               
               
               Cow position:chr2:210823-210577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:183
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:433-658
               
               
               Cow position:chr2:74858564-74858806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):75, 113

               
               
               Conread position:433-665
               
               
               Cow position:chr2:44933769-44933527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:434-669
               
               
               Cow position:chr2:3788664-3788411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:435-657
               
               
               Cow position:chr2:55482935-55482710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):101, 12

               
               
               Conread position:435-665
               
               
               Cow position:chr2:36083599-36083847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):12, 32

               
               
               Conread position:446-668
               
               
               Cow position:chr2:59412481-59412249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):52, 169

               
               
               Conread position:452-665
               
               
               Cow position:chr2:38375014-38375241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:506-663
               
               
               Cow position:chr2:72792226-72792065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:508-658
               
               
               Cow position:chr2:25022221-25022367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:508-663
               
               
               Cow position:chr2:68762968-68762808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr2:8085313-8085474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr2:25887231-25887074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr2:26904454-26904294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):77, 26

               
               
               Conread position:508-665
               
               
               Cow position:chr2:34501101-34500940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr2:45966699-45966540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):68, 44

               
               
               Conread position:508-665
               
               
               Cow position:chr2:46048918-46048757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr2:52617794-52617955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr2:2411504-2411341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):79, 37

               
               
               Conread position:508-668
               
               
               Cow position:chr2:6962830-6962993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr2:9188727-9188568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):89, 77

               
               
               Conread position:508-668
               
               
               Cow position:chr2:25743777-25743941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr2:39117941-39118097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr2:42669383-42669221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):84, 56

               
               
               Conread position:508-668
               
               
               Cow position:chr2:46184219-46184055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-669
               
               
               Cow position:chr2:313358-313193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-670
               
               
               Cow position:chr2:11682464-11682631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:508-672
               
               
               Cow position:chr2:44092678-44092845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):79, 93

               
               
               Conread position:509-668
               
               
               Cow position:chr2:4932869-4932708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:509-668
               
               
               Cow position:chr2:32410920-32410761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):94, 147

               
               
               Conread position:509-670
               
               
               Cow position:chr2:38943766-38943931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):25, 123

               
               
               Conread position:510-668
               
               
               Cow position:chr2:10264095-10263933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:511-668
               
               
               Cow position:chr2:19012678-19012839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:511-670
               
               
               Cow position:chr2:10137882-10137720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):74, 12

               
               
               Conread position:511-670
               
               
               Cow position:chr2:51618560-51618726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):73, 9

               
               
               Conread position:515-665
               
               
               Cow position:chr2:47621303-47621150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:515-667
               
               
               Cow position:chr2:53004899-53004743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:515-670
               
               
               Cow position:chr2:34563065-34562908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):74, 129

               
               
               Conread position:534-670
               
               
               Cow position:chr2:58566335-58566197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):53, 77

               
               
               Conread position:537-668
               
               
               Cow position:chr2:4451713-4451848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:541-672
               
               
               Cow position:chr2:24687033-24687168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:160-509
               
               
               Cow position:chr20:12436937-12436583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:232
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):11, 176

               
               
               Conread position:160-668
               
               
               Cow position:chr20:15293466-15293982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 24

               
               
               Conread position:160-668
               
               
               Cow position:chr20:21916121-21916636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:333
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):7, 24

               
               
               Conread position:169-668
               
               
               Cow position:chr20:19439410-19439915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:326
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):51, 287

               
               
               Conread position:169-670
               
               
               Cow position:chr20:871523-871000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:345
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):16, 73

               
               
               Conread position:170-431
               
               
               Cow position:chr20:28162320-28162587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:170-453
               
               
               Cow position:chr20:30386584-30386294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):50, 127

               
               
               Conread position:170-665
               
               
               Cow position:chr20:26054195-26053693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 241

               
               
               Conread position:170-665
               
               
               Cow position:chr20:30429766-30430269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:328
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):50, 244

               
               
               Conread position:170-668
               
               
               Cow position:chr20:20441456-20440950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 225

               
               
               Conread position:170-670
               
               
               Cow position:chr20:9547143-9547649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 144

               
               
               Conread position:173-668
               
               
               Cow position:chr20:30687089-30687578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:311
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):21, 67

               
               
               Conread position:179-402
               
               
               Cow position:chr20:13793531-13793760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):47, 15

               
               
               Conread position:183-384
               
               
               Cow position:chr20:824266-824481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):26, 166

               
               
               Conread position:183-385
               
               
               Cow position:chr20:8972678-8972463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:183-418
               
               
               Cow position:chr20:21395419-21395660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):52, 151

               
               
               Conread position:183-431
               
               
               Cow position:chr20:5536443-5536706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):26, 160

               
               
               Conread position:183-431
               
               
               Cow position:chr20:29950028-29950287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):18, 12

               
               
               Conread position:183-497
               
               
               Cow position:chr20:7573067-7572747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:232
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):29, 216

               
               
               Conread position:183-504
               
               
               Cow position:chr20:31497919-31497589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:218
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):11, 189

               
               
               Conread position:183-664
               
               
               Cow position:chr20:13764394-13764893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 160

               
               
               Conread position:183-665
               
               
               Cow position:chr20:24615403-24614909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:331
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):18, 183

               
               
               Conread position:183-668
               
               
               Cow position:chr20:17660242-17659742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:323
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):26, 5

               
               
               Conread position:183-668
               
               
               Cow position:chr20:23800384-23800886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:328
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):26, 10

               
               
               Conread position:184-414
               
               
               Cow position:chr20:25849321-25849085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):13, 151

               
               
               Conread position:184-668
               
               
               Cow position:chr20:15066953-15067441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:328
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):25, 10

               
               
               Conread position:184-668
               
               
               Cow position:chr20:23468166-23467667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:325
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):25, 157

               
               
               Conread position:184-668
               
               
               Cow position:chr20:28564072-28563575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:321
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):12, 42

               
               
               Conread position:185-378
               
               
               Cow position:chr20:13769355-13769554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):32, 86

               
               
               Conread position:188-400
               
               
               Cow position:chr20:10853839-10853621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):43, 106

               
               
               Conread position:190-668
               
               
               Cow position:chr20:18323454-18322959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 22

               
               
               Conread position:191-403
               
               
               Cow position:chr20:13499618-13499841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:173
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:204-433
               
               
               Cow position:chr20:32349738-32349967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):127, 58

               
               
               Conread position:206-665
               
               
               Cow position:chr20:25899224-25899686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 208

               
               
               Conread position:231-400
               
               
               Cow position:chr20:19214540-19214710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):155, 0

               
               
               Conread position:232-399
               
               
               Cow position:chr20:19341389-19341556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):152, 86

               
               
               Conread position:266-668
               
               
               Cow position:chr20:8366129-8365726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:252
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):88, 193

               
               
               Conread position:277-670
               
               
               Cow position:chr20:16178141-16177746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):113, 146

               
               
               Conread position:432-670
               
               
               Cow position:chr20:13678100-13677845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:466-670
               
               
               Cow position:chr20:16957920-16957712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):116, 45

               
               
               Conread position:508-658
               
               
               Cow position:chr20:8972334-8972180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr20:30577723-30577884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr20:32350083-32350240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):23, 32

               
               
               Conread position:508-665
               
               
               Cow position:chr20:33598277-33598438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr20:8351502-8351338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr20:12436563-12436397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr20:14327764-14327928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-670
               
               
               Cow position:chr20:13793854-13794021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:510-668
               
               
               Cow position:chr20:21396073-21396235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:511-646
               
               
               Cow position:chr20:13953024-13953162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:511-668
               
               
               Cow position:chr20:7513188-7513345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):81, 35

               
               
               Conread position:516-668
               
               
               Cow position:chr20:10867944-10867789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:524-665
               
               
               Cow position:chr20:6900263-6900118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:524-665
               
               
               Cow position:chr20:6906502-6906357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:524-670
               
               
               Cow position:chr20:7570384-7570234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:157-668
               
               
               Cow position:chr21:26836780-26837301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 27

               
               
               Conread position:159-382
               
               
               Cow position:chr21:31639513-31639737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:160-405
               
               
               Cow position:chr21:47942545-47942794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):7, 178

               
               
               Conread position:160-668
               
               
               Cow position:chr21:5018736-5019255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 24

               
               
               Conread position:160-668
               
               
               Cow position:chr21:39426668-39427178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:345
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):12, 39

               
               
               Conread position:161-668
               
               
               Cow position:chr21:34000479-33999960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:330
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):80, 47

               
               
               Conread position:169-385
               
               
               Cow position:chr21:2673086-2672868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):37, 71

               
               
               Conread position:169-656
               
               
               Cow position:chr21:1286617-1286103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:348
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):16, 26

               
               
               Conread position:169-668
               
               
               Cow position:chr21:27069354-27068851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:329
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):40, 18

               
               
               Conread position:170-327
               
               
               Cow position:chr21:21520219-21520372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:170-403
               
               
               Cow position:chr21:40270065-40269826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):17, 13

               
               
               Conread position:170-414
               
               
               Cow position:chr21:33710756-33711006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:170-414
               
               
               Cow position:chr21:38802044-38802293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):50, 241

               
               
               Conread position:170-583
               
               
               Cow position:chr21:6414417-6414000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:266
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):50, 249

               
               
               Conread position:170-652
               
               
               Cow position:chr21:19612367-19612856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:319
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):26, 18

               
               
               Conread position:170-665
               
               
               Cow position:chr21:11507221-11507717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:333
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):50, 243

               
               
               Conread position:170-668
               
               
               Cow position:chr21:2512456-2512962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 17

               
               
               Conread position:170-668
               
               
               Cow position:chr21:26635550-26635044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:332
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):50, 241

               
               
               Conread position:170-668
               
               
               Cow position:chr21:30563281-30563776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:331
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):51, 13

               
               
               Conread position:170-668
               
               
               Cow position:chr21:30597861-30597355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:328
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):59, 13

               
               
               Conread position:170-668
               
               
               Cow position:chr21:31514707-31514204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 13

               
               
               Conread position:171-429
               
               
               Cow position:chr21:2539480-2539205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:171-668
               
               
               Cow position:chr21:47646940-47647446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:323
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):58, 16

               
               
               Conread position:173-665
               
               
               Cow position:chr21:36979285-36978794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 101

               
               
               Conread position:173-668
               
               
               Cow position:chr21:21701529-21702018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:329
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):81, 31

               
               
               Conread position:182-378
               
               
               Cow position:chr21:36979933-36980131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):30, 160

               
               
               Conread position:183-373
               
               
               Cow position:chr21:29257477-29257293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):15, 119

               
               
               Conread position:183-377
               
               
               Cow position:chr21:24085191-24084983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):26, 196

               
               
               Conread position:183-380
               
               
               Cow position:chr21:28985710-28985917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:183-380
               
               
               Cow position:chr21:39089983-39090185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):25, 133

               
               
               Conread position:183-405
               
               
               Cow position:chr21:9893584-9893816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):26, 102

               
               
               Conread position:183-405
               
               
               Cow position:chr21:29003926-29003680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:183-665
               
               
               Cow position:chr21:2903209-2903671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:301
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):23, 201

               
               
               Conread position:183-665
               
               
               Cow position:chr21:33710760-33711243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:326
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):26, 85

               
               
               Conread position:183-668
               
               
               Cow position:chr21:147535-148033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 157

               
               
               Conread position:183-668
               
               
               Cow position:chr21:31250623-31251104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:314
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):63, 11

               
               
               Conread position:183-668
               
               
               Cow position:chr21:34655447-34655937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:308
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):48, 331

               
               
               Conread position:183-668
               
               
               Cow position:chr21:37372846-37373339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 164

               
               
               Conread position:183-670
               
               
               Cow position:chr21:38023735-38024217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:343
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):19, 130

               
               
               Conread position:183-672
               
               
               Cow position:chr21:10568314-10568808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:321
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):26, 156

               
               
               Conread position:185-404
               
               
               Cow position:chr21:4588389-4588168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):39, 82

               
               
               Conread position:185-411
               
               
               Cow position:chr21:26649085-26648858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):27, 83

               
               
               Conread position:185-665
               
               
               Cow position:chr21:997222-996731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:313
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):41, 214

               
               
               Conread position:185-665
               
               
               Cow position:chr21:4565079-4565564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 28

               
               
               Conread position:185-668
               
               
               Cow position:chr21:2880211-2879715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:327
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):24, 8

               
               
               Conread position:186-668
               
               
               Cow position:chr21:28257040-28257531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 218

               
               
               Conread position:203-506
               
               
               Cow position:chr21:21025099-21025389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:211
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):31, 126

               
               
               Conread position:205-670
               
               
               Cow position:chr21:7591309-7591770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:303
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):185, 27

               
               
               Conread position:232-402
               
               
               Cow position:chr21:25815886-25815715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):152, 162

               
               
               Conread position:236-384
               
               
               Cow position:chr21:27150158-27150306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:236-429
               
               
               Cow position:chr21:218686-218881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):150, 85

               
               
               Conread position:237-643
               
               
               Cow position:chr21:11157142-11156734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:278
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):134, 105

               
               
               Conread position:238-504
               
               
               Cow position:chr21:27567426-27567699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):118, 72

               
               
               Conread position:421-661
               
               
               Cow position:chr21:28986997-28987248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):39, 76

               
               
               Conread position:433-668
               
               
               Cow position:chr21:27285307-27285560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:434-668
               
               
               Cow position:chr21:9865211-9864964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):72, 184

               
               
               Conread position:434-670
               
               
               Cow position:chr21:37149834-37150094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):71, 135

               
               
               Conread position:435-668
               
               
               Cow position:chr21:37124486-37124243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:503-668
               
               
               Cow position:chr21:26401809-26401640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:508-649
               
               
               Cow position:chr21:40683359-40683504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-658
               
               
               Cow position:chr21:6967514-6967360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr21:4096627-4096788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr21:32897901-32897746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr21:42915753-42915914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr21:43564159-43563998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr21:3780723-3780887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr21:29003571-29003412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr21:33318447-33318278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr21:41797641-41797805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:509-670
               
               
               Cow position:chr21:15249478-15249315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:510-668
               
               
               Cow position:chr21:44764003-44763841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:511-668
               
               
               Cow position:chr21:4036201-4036362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:515-669
               
               
               Cow position:chr21:4716917-4717071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):82, 7

               
               
               Conread position:525-668
               
               
               Cow position:chr21:27149593-27149446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:529-665
               
               
               Cow position:chr21:29949761-29949902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:157-417
               
               
               Cow position:chr22:38960528-38960794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):10, 104

               
               
               Conread position:158-384
               
               
               Cow position:chr22:1268330-1268098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:160-403
               
               
               Cow position:chr22:37268592-37268841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):11, 239

               
               
               Conread position:160-414
               
               
               Cow position:chr22:16202338-16202598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:160-431
               
               
               Cow position:chr22:31333623-31333346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):11, 28

               
               
               Conread position:160-661
               
               
               Cow position:chr22:19142259-19141758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:324
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):7, 24

               
               
               Conread position:160-665
               
               
               Cow position:chr22:325760-325245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:331
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):11, 231

               
               
               Conread position:160-665
               
               
               Cow position:chr22:1281309-1280796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:324
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):11, 119

               
               
               Conread position:160-665
               
               
               Cow position:chr22:20239412-20238901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 250

               
               
               Conread position:160-668
               
               
               Cow position:chr22:1880229-1880747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:335
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):7, 259

               
               
               Conread position:160-668
               
               
               Cow position:chr22:36860123-36859608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:334
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):11, 175

               
               
               Conread position:160-668
               
               
               Cow position:chr22:44492480-44492990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:330
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):7, 20

               
               
               Conread position:169-384
               
               
               Cow position:chr22:27308343-27308123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:169-403
               
               
               Cow position:chr22:8736917-8736675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):40, 168

               
               
               Conread position:169-408
               
               
               Cow position:chr22:5936743-5936499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):66, 128

               
               
               Conread position:170-352
               
               
               Cow position:chr22:24951993-24952180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:170-384
               
               
               Cow position:chr22:10908400-10908181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:170-414
               
               
               Cow position:chr22:21034954-21034704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):45, 226

               
               
               Conread position:170-414
               
               
               Cow position:chr22:32283246-32282996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:170-587
               
               
               Cow position:chr22:23752270-23751855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:266
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):52, 141

               
               
               Conread position:170-663
               
               
               Cow position:chr22:1323588-1324083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:323
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):15, 91

               
               
               Conread position:170-667
               
               
               Cow position:chr22:30653954-30654472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:343
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):37, 6

               
               
               Conread position:170-668
               
               
               Cow position:chr22:538546-539047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:329
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):50, 8

               
               
               Conread position:170-668
               
               
               Cow position:chr22:6022088-6022592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:331
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):50, 244

               
               
               Conread position:170-668
               
               
               Cow position:chr22:11803615-11803113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 32

               
               
               Conread position:170-668
               
               
               Cow position:chr22:15352309-15352804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:328
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):54, 151

               
               
               Conread position:170-668
               
               
               Cow position:chr22:30677278-30676772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 314

               
               
               Conread position:170-668
               
               
               Cow position:chr22:34169775-34170277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:328
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):63, 13

               
               
               Conread position:170-668
               
               
               Cow position:chr22:35670229-35669729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 17

               
               
               Conread position:170-668
               
               
               Cow position:chr22:37292238-37291735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 13

               
               
               Conread position:170-668
               
               
               Cow position:chr22:39468078-39467573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:329
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):59, 13

               
               
               Conread position:170-668
               
               
               Cow position:chr22:44368046-44367540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 286

               
               
               Conread position:170-668
               
               
               Cow position:chr22:45014787-45015287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:329
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):201, 58

               
               
               Conread position:171-380
               
               
               Cow position:chr22:46580281-46580067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):16, 8

               
               
               Conread position:171-668
               
               
               Cow position:chr22:46585127-46584628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:325
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):55, 16

               
               
               Conread position:173-665
               
               
               Cow position:chr22:3272649-3272133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 13

               
               
               Conread position:175-414
               
               
               Cow position:chr22:15955582-15955342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):60, 53

               
               
               Conread position:177-665
               
               
               Cow position:chr22:559269-558769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:328
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):13, 160

               
               
               Conread position:183-384
               
               
               Cow position:chr22:21195058-21194843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:183-414
               
               
               Cow position:chr22:44397871-44398115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):26, 144

               
               
               Conread position:183-431
               
               
               Cow position:chr22:17327018-17326755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):23, 160

               
               
               Conread position:183-665
               
               
               Cow position:chr22:3276917-3276416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 234

               
               
               Conread position:183-668
               
               
               Cow position:chr22:296886-297388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 229

               
               
               Conread position:183-668
               
               
               Cow position:chr22:695056-695560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 221

               
               
               Conread position:183-668
               
               
               Cow position:chr22:21590863-21591364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:331
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):26, 5

               
               
               Conread position:183-668
               
               
               Cow position:chr22:42992615-42993112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:333
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):29, 160

               
               
               Conread position:183-670
               
               
               Cow position:chr22:290259-289756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 212

               
               
               Conread position:183-670
               
               
               Cow position:chr22:41474263-41473754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:335
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):18, 41

               
               
               Conread position:184-668
               
               
               Cow position:chr22:30129024-30129521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:328
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):25, 294

               
               
               Conread position:184-668
               
               
               Cow position:chr22:30146673-30147170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:330
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):25, 295

               
               
               Conread position:185-504
               
               
               Cow position:chr22:45582354-45582682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):55, 30

               
               
               Conread position:185-665
               
               
               Cow position:chr22:3803626-3804117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:331
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):16, 10

               
               
               Conread position:185-668
               
               
               Cow position:chr22:18028732-18029211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:324
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):27, 87

               
               
               Conread position:188-383
               
               
               Cow position:chr22:14824250-14824049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):43, 72

               
               
               Conread position:188-668
               
               
               Cow position:chr22:44935411-44935902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:320
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):47, 151

               
               
               Conread position:200-668
               
               
               Cow position:chr22:15852884-15853357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:312
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):35, 7

               
               
               Conread position:204-384
               
               
               Cow position:chr22:3305124-3304948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:204-669
               
               
               Cow position:chr22:2563282-2562823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:299
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):33, 152

               
               
               Conread position:205-658
               
               
               Cow position:chr22:13773988-13774444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:291
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):30, 247

               
               
               Conread position:231-660
               
               
               Cow position:chr22:15279806-15280242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:297
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):30, 37

               
               
               Conread position:231-668
               
               
               Cow position:chr22:29037171-29037598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:279
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):179, 34

               
               
               Conread position:234-380
               
               
               Cow position:chr22:35905882-35905735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:234-414
               
               
               Cow position:chr22:8664477-8664297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):150, 19

               
               
               Conread position:234-670
               
               
               Cow position:chr22:11807236-11806809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:295
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):272, 121

               
               
               Conread position:236-414
               
               
               Cow position:chr22:29011769-29011590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):150, 0

               
               
               Conread position:236-415
               
               
               Cow position:chr22:8120275-8120095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):150, 0

               
               
               Conread position:236-665
               
               
               Cow position:chr22:29499047-29499479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 177

               
               
               Conread position:252-668
               
               
               Cow position:chr22:28783637-28784055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:268
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):72, 65

               
               
               Conread position:277-665
               
               
               Cow position:chr22:18605253-18604861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:261
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):63, 52

               
               
               Conread position:277-670
               
               
               Cow position:chr22:48274791-48274402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:254
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):104, 54

               
               
               Conread position:320-665
               
               
               Cow position:chr22:34595343-34595679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:243
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):71, 88

               
               
               Conread position:331-670
               
               
               Cow position:chr22:36562843-36562494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:257
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):57, 77

               
               
               Conread position:339-668
               
               
               Cow position:chr22:1313395-1313064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):51, 12

               
               
               Conread position:352-668
               
               
               Cow position:chr22:36574399-36574075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 56

               
               
               Conread position:427-672
               
               
               Cow position:chr22:36560383-36560127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):80, 67

               
               
               Conread position:433-665
               
               
               Cow position:chr22:49717-49947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):102, 61

               
               
               Conread position:433-670
               
               
               Cow position:chr22:34601269-34601524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):65, 22

               
               
               Conread position:504-668
               
               
               Cow position:chr22:5314062-5314230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:505-668
               
               
               Cow position:chr22:26336974-26337136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):79, 41

               
               
               Conread position:508-663
               
               
               Cow position:chr22:36586041-36585888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):94, 58

               
               
               Conread position:508-665
               
               
               Cow position:chr22:10548423-10548584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr22:10934453-10934292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):30, 19

               
               
               Conread position:508-665
               
               
               Cow position:chr22:36545157-36545010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr22:1267975-1267823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr22:2849813-2849653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):94, 46

               
               
               Conread position:508-668
               
               
               Cow position:chr22:5932292-5932130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:508-668
               
               
               Cow position:chr22:6333616-6333777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr22:14884224-14884387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):30, 24

               
               
               Conread position:508-668
               
               
               Cow position:chr22:15310180-15310015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr22:21194441-21194276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr22:25969640-25969479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):79, 91

               
               
               Conread position:508-668
               
               
               Cow position:chr22:29853631-29853795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr22:32204843-32205005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):79, 24

               
               
               Conread position:508-668
               
               
               Cow position:chr22:35905395-35905230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-669
               
               
               Cow position:chr22:11034159-11034322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):84, 12

               
               
               Conread position:508-670
               
               
               Cow position:chr22:41242160-41242321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:510-668
               
               
               Cow position:chr22:31333271-31333109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:511-670
               
               
               Cow position:chr22:44478499-44478658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):83, 9

               
               
               Conread position:514-668
               
               
               Cow position:chr22:41847768-41847610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:515-670
               
               
               Cow position:chr22:23430106-23429947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:523-668
               
               
               Cow position:chr22:980077-980226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:152-668
               
               
               Cow position:chr23:15526991-15527519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 8

               
               
               Conread position:160-417
               
               
               Cow position:chr23:15876144-15875885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):11, 117

               
               
               Conread position:160-668
               
               
               Cow position:chr23:3879665-3879149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:340
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):7, 21

               
               
               Conread position:170-378
               
               
               Cow position:chr23:38691923-38692136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:170-384
               
               
               Cow position:chr23:14972524-14972305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:170-384
               
               
               Cow position:chr23:23172210-23172427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):50, 98

               
               
               Conread position:170-396
               
               
               Cow position:chr23:22145874-22145642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):59, 164

               
               
               Conread position:170-414
               
               
               Cow position:chr23:22168074-22168322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):59, 9

               
               
               Conread position:170-414
               
               
               Cow position:chr23:28304347-28304597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):17, 13

               
               
               Conread position:170-607
               
               
               Cow position:chr23:41141795-41141349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:294
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):50, 241

               
               
               Conread position:170-665
               
               
               Cow position:chr23:4818454-4818953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:318
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):50, 164

               
               
               Conread position:170-665
               
               
               Cow position:chr23:7314342-7314846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 249

               
               
               Conread position:170-665
               
               
               Cow position:chr23:32351330-32350827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 241

               
               
               Conread position:170-668
               
               
               Cow position:chr23:608147-608650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 186

               
               
               Conread position:170-668
               
               
               Cow position:chr23:4435084-4435591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 282

               
               
               Conread position:170-668
               
               
               Cow position:chr23:11714434-11713928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 229

               
               
               Conread position:170-668
               
               
               Cow position:chr23:14961515-14961017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:332
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):15, 66

               
               
               Conread position:170-668
               
               
               Cow position:chr23:16497812-16497317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:332
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):59, 117

               
               
               Conread position:170-668
               
               
               Cow position:chr23:20154794-20154284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:326
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):59, 15

               
               
               Conread position:170-668
               
               
               Cow position:chr23:36029946-36029451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:332
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):60, 13

               
               
               Conread position:171-666
               
               
               Cow position:chr23:31164235-31164737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:324
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):58, 164

               
               
               Conread position:172-364
               
               
               Cow position:chr23:4513918-4514114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):37, 15

               
               
               Conread position:176-669
               
               
               Cow position:chr23:618045-617541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:352
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):55, 18

               
               
               Conread position:177-368
               
               
               Cow position:chr23:17878322-17878126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:178-668
               
               
               Cow position:chr23:28218860-28219372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 346

               
               
               Conread position:183-356
               
               
               Cow position:chr23:6220587-6220769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):29, 142

               
               
               Conread position:183-402
               
               
               Cow position:chr23:31648591-31648362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):50, 5

               
               
               Conread position:183-439
               
               
               Cow position:chr23:16613748-16613483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):26, 96

               
               
               Conread position:183-504
               
               
               Cow position:chr23:26838257-26838578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 190

               
               
               Conread position:183-665
               
               
               Cow position:chr23:5873136-5872635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:331
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):26, 194

               
               
               Conread position:183-668
               
               
               Cow position:chr23:965059-964564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:327
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):26, 160

               
               
               Conread position:183-668
               
               
               Cow position:chr23:2793821-2793333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:324
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):26, 9

               
               
               Conread position:183-668
               
               
               Cow position:chr23:19490987-19491488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:319
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):26, 160

               
               
               Conread position:183-670
               
               
               Cow position:chr23:2759334-2759840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:333
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):20, 160

               
               
               Conread position:185-384
               
               
               Cow position:chr23:16055211-16055424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:193-380
               
               
               Cow position:chr23:2439832-2439642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):42, 84

               
               
               Conread position:193-668
               
               
               Cow position:chr23:30237733-30238207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 198

               
               
               Conread position:204-411
               
               
               Cow position:chr23:25677830-25677623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):30, 73

               
               
               Conread position:204-668
               
               
               Cow position:chr23:4639119-4638659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:300
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):136, 30

               
               
               Conread position:231-378
               
               
               Cow position:chr23:22369602-22369454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:107
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:233-506
               
               
               Cow position:chr23:23283024-23283282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):8, 149

               
               
               Conread position:234-411
               
               
               Cow position:chr23:8287441-8287620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):111, 95

               
               
               Conread position:266-668
               
               
               Cow position:chr23:1400672-1400275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:264
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):124, 55

               
               
               Conread position:276-607
               
               
               Cow position:chr23:11074935-11074609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:225
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):111, 128

               
               
               Conread position:277-612
               
               
               Cow position:chr23:26158897-26158569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:238
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):219, 35

               
               
               Conread position:287-487
               
               
               Cow position:chr23:38111106-38111302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):159, 77

               
               
               Conread position:431-672
               
               
               Cow position:chr23:2577305-2577565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):77, 26

               
               
               Conread position:435-665
               
               
               Cow position:chr23:29443391-29443154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:508-658
               
               
               Cow position:chr23:14972181-14972029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):91, 57

               
               
               Conread position:508-665
               
               
               Cow position:chr23:942735-942897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr23:7357011-7357172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr23:10874829-10874664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr23:2025307-2025143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr23:15178837-15179001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr23:17844657-17844816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr23:19279244-19279081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):83, 26

               
               
               Conread position:508-668
               
               
               Cow position:chr23:22145532-22145368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr23:28304689-28304853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr23:29450556-29450397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr23:37200746-37200582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:509-657
               
               
               Cow position:chr23:6221062-6221210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:509-668
               
               
               Cow position:chr23:1050759-1050594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:512-670
               
               
               Cow position:chr23:16055552-16055715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):37, 16

               
               
               Conread position:534-670
               
               
               Cow position:chr23:26838729-26838873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:1-510
               
               
               Cow position:chr24:17958192-17957687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 50

               
               
               Conread position:159-373
               
               
               Cow position:chr24:22972566-22972794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):26, 7

               
               
               Conread position:159-664
               
               
               Cow position:chr24:33934894-33935411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:341
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):12, 42

               
               
               Conread position:160-665
               
               
               Cow position:chr24:23504349-23503835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 252

               
               
               Conread position:161-405
               
               
               Cow position:chr24:36298933-36299169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):226, 38

               
               
               Conread position:169-350
               
               
               Cow position:chr24:6435994-6436190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:169-431
               
               
               Cow position:chr24:9545575-9545844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):18, 14

               
               
               Conread position:169-494
               
               
               Cow position:chr24:38639037-38639357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):35, 113

               
               
               Conread position:169-665
               
               
               Cow position:chr24:6337894-6338407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 124

               
               
               Conread position:169-668
               
               
               Cow position:chr24:9090541-9090034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:333
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):16, 191

               
               
               Conread position:170-379
               
               
               Cow position:chr24:6023566-6023352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:170-384
               
               
               Cow position:chr24:5991704-5991485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:170-410
               
               
               Cow position:chr24:310389-310635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:170-414
               
               
               Cow position:chr24:6036511-6036760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):59, 17

               
               
               Conread position:170-414
               
               
               Cow position:chr24:44019030-44019280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:170-422
               
               
               Cow position:chr24:17322214-17322466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):50, 17

               
               
               Conread position:170-431
               
               
               Cow position:chr24:14755520-14755787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):62, 164

               
               
               Conread position:170-665
               
               
               Cow position:chr24:6963229-6962726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 229

               
               
               Conread position:170-665
               
               
               Cow position:chr24:13044106-13043604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 322

               
               
               Conread position:170-668
               
               
               Cow position:chr24:147090-146582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:318
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):59, 306

               
               
               Conread position:170-668
               
               
               Cow position:chr24:7063064-7063565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 108

               
               
               Conread position:170-668
               
               
               Cow position:chr24:19834926-19835428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 152

               
               
               Conread position:170-668
               
               
               Cow position:chr24:29188812-29189316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:333
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):40, 13

               
               
               Conread position:171-506
               
               
               Cow position:chr24:12149772-12149449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):38, 213

               
               
               Conread position:171-665
               
               
               Cow position:chr24:13189702-13190189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:328
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):34, 12

               
               
               Conread position:173-384
               
               
               Cow position:chr24:6658969-6658754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):36, 70

               
               
               Conread position:173-402
               
               
               Cow position:chr24:40469842-40469611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):31, 66

               
               
               Conread position:183-377
               
               
               Cow position:chr24:38289240-38289044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):33, 125

               
               
               Conread position:183-400
               
               
               Cow position:chr24:6130337-6130566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:183-401
               
               
               Cow position:chr24:17409993-17410217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:183-402
               
               
               Cow position:chr24:42584234-42584011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):27, 68

               
               
               Conread position:183-417
               
               
               Cow position:chr24:35869044-35868811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):49, 5

               
               
               Conread position:183-668
               
               
               Cow position:chr24:14870804-14870298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 105

               
               
               Conread position:183-668
               
               
               Cow position:chr24:16560788-16560283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:320
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):25, 50

               
               
               Conread position:183-670
               
               
               Cow position:chr24:36558025-36557540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:319
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):23, 81

               
               
               Conread position:184-384
               
               
               Cow position:chr24:19469073-19468868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):25, 114

               
               
               Conread position:185-668
               
               
               Cow position:chr24:13233786-13234275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 91

               
               
               Conread position:185-668
               
               
               Cow position:chr24:19703023-19703525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:333
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):27, 9

               
               
               Conread position:186-668
               
               
               Cow position:chr24:6668219-6667743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:305
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):54, 7

               
               
               Conread position:188-665
               
               
               Cow position:chr24:32847547-32848039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:327
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):24, 111

               
               
               Conread position:202-414
               
               
               Cow position:chr24:6060967-6061182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):33, 13

               
               
               Conread position:204-665
               
               
               Cow position:chr24:41004049-41004519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:295
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):130, 35

               
               
               Conread position:213-670
               
               
               Cow position:chr24:40101348-40100895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:301
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):81, 109

               
               
               Conread position:230-665
               
               
               Cow position:chr24:6353724-6354158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:294
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):110, 32

               
               
               Conread position:268-417
               
               
               Cow position:chr24:35840270-35840115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:277-668
               
               
               Cow position:chr24:23094391-23094003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):68, 52

               
               
               Conread position:279-656
               
               
               Cow position:chr24:36480323-36479940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):227, 105

               
               
               Conread position:283-504
               
               
               Cow position:chr24:39678950-39679161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):218, 103

               
               
               Conread position:469-669
               
               
               Cow position:chr24:38475085-38475282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):71, 51

               
               
               Conread position:508-665
               
               
               Cow position:chr24:19468745-19468585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr24:40550486-40550647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr24:6022218-6022054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr24:12088063-12088228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr24:12149426-12149262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):14, 25

               
               
               Conread position:508-668
               
               
               Cow position:chr24:17322539-17322703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr24:23096900-23096742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr24:29085374-29085529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:508-669
               
               
               Cow position:chr24:17957668-17957504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):77, 160

               
               
               Conread position:508-670
               
               
               Cow position:chr24:36299274-36299435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):16, 47

               
               
               Conread position:508-672
               
               
               Cow position:chr24:16082637-16082469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):79, 164

               
               
               Conread position:509-665
               
               
               Cow position:chr24:209145-208983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):76, 139

               
               
               Conread position:509-665
               
               
               Cow position:chr24:38585271-38585111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:510-665
               
               
               Cow position:chr24:19184030-19184189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:510-668
               
               
               Cow position:chr24:5991298-5991137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):75, 64

               
               
               Conread position:510-670
               
               
               Cow position:chr24:11151261-11151099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):77, 44

               
               
               Conread position:511-668
               
               
               Cow position:chr24:6323401-6323239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:518-670
               
               
               Cow position:chr24:14174869-14174716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):69, 14

               
               
               Conread position:529-665
               
               
               Cow position:chr24:16182478-16182619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:537-665
               
               
               Cow position:chr24:17455245-17455113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:541-668
               
               
               Cow position:chr24:30816975-30817102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:134-509
               
               
               Cow position:chr25:12757675-12757312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:254
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):24, 101

               
               
               Conread position:160-356
               
               
               Cow position:chr25:21902508-21902710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):14, 35

               
               
               Conread position:160-414
               
               
               Cow position:chr25:13062237-13061976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:160-668
               
               
               Cow position:chr25:18178159-18178679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 222

               
               
               Conread position:161-414
               
               
               Cow position:chr25:35588860-35588602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):46, 11

               
               
               Conread position:169-668
               
               
               Cow position:chr25:11041824-11042334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:347
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):14, 125

               
               
               Conread position:169-668
               
               
               Cow position:chr25:18888271-18887754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:339
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):24, 175

               
               
               Conread position:169-670
               
               
               Cow position:chr25:11931318-11930807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:333
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):40, 354

               
               
               Conread position:170-379
               
               
               Cow position:chr25:32581006-32581220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:170-414
               
               
               Cow position:chr25:13782531-13782781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):31, 13

               
               
               Conread position:170-414
               
               
               Cow position:chr25:20346499-20346249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:170-668
               
               
               Cow position:chr25:12941187-12940684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 13

               
               
               Conread position:170-668
               
               
               Cow position:chr25:13693184-13692678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 241

               
               
               Conread position:170-668
               
               
               Cow position:chr25:17588078-17587578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 13

               
               
               Conread position:170-668
               
               
               Cow position:chr25:18305622-18306136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:334
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):55, 37

               
               
               Conread position:170-668
               
               
               Cow position:chr25:19339115-19338610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 138

               
               
               Conread position:170-668
               
               
               Cow position:chr25:20631108-20631613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:331
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):17, 13

               
               
               Conread position:170-668
               
               
               Cow position:chr25:22149025-22149543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 13

               
               
               Conread position:170-668
               
               
               Cow position:chr25:25508190-25508692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:329
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):17, 165

               
               
               Conread position:175-402
               
               
               Cow position:chr25:20097902-20098138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):10, 173

               
               
               Conread position:178-400
               
               
               Cow position:chr25:18273298-18273065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):34, 171

               
               
               Conread position:179-502
               
               
               Cow position:chr25:9393134-9393473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):31, 56

               
               
               Conread position:183-411
               
               
               Cow position:chr25:18486077-18485833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:183-504
               
               
               Cow position:chr25:30266979-30267324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:233
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):26, 66

               
               
               Conread position:183-665
               
               
               Cow position:chr25:19922032-19922533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:313
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):26, 241

               
               
               Conread position:183-668
               
               
               Cow position:chr25:27021107-27020608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 5

               
               
               Conread position:183-668
               
               
               Cow position:chr25:34345508-34345016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:314
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):29, 152

               
               
               Conread position:185-384
               
               
               Cow position:chr25:34238730-34238524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):50, 88

               
               
               Conread position:187-378
               
               
               Cow position:chr25:19408298-19408499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:188-670
               
               
               Cow position:chr25:18251434-18250961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:308
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):15, 209

               
               
               Conread position:203-668
               
               
               Cow position:chr25:24215979-24215512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:314
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):44, 36

               
               
               Conread position:204-670
               
               
               Cow position:chr25:2368517-2368986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:316
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):25, 187

               
               
               Conread position:231-668
               
               
               Cow position:chr25:16924852-16924412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:290
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):155, 135

               
               
               Conread position:234-403
               
               
               Cow position:chr25:17559012-17558842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):156, 0

               
               
               Conread position:237-435
               
               
               Cow position:chr25:4532953-4532758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):118, 144

               
               
               Conread position:307-670
               
               
               Cow position:chr25:17656029-17656389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:240
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):78, 48

               
               
               Conread position:433-670
               
               
               Cow position:chr25:34238498-34238256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):76, 58

               
               
               Conread position:508-660
               
               
               Cow position:chr25:16448838-16448682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr25:14538102-14537941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr25:9393773-9393932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:134
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr25:13782873-13783036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):28, 24

               
               
               Conread position:508-668
               
               
               Cow position:chr25:13958633-13958797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr25:26455312-26455475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):77, 12

               
               
               Conread position:508-668
               
               
               Cow position:chr25:28861434-28861597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):84, 61

               
               
               Conread position:508-668
               
               
               Cow position:chr25:32579073-32578910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):79, 14

               
               
               Conread position:508-668
               
               
               Cow position:chr25:34506259-34506095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:509-668
               
               
               Cow position:chr25:18191829-18191666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:511-663
               
               
               Cow position:chr25:18451404-18451561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:512-670
               
               
               Cow position:chr25:35588505-35588344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):26, 16

               
               
               Conread position:523-670
               
               
               Cow position:chr25:10297170-10297317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:150-380
               
               
               Cow position:chr26:35336717-35336481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):25, 13

               
               
               Conread position:160-376
               
               
               Cow position:chr26:28373745-28373523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:160-403
               
               
               Cow position:chr26:2200113-2200362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):60, 239

               
               
               Conread position:160-584
               
               
               Cow position:chr26:3029355-3028926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:274
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):11, 252

               
               
               Conread position:160-668
               
               
               Cow position:chr26:30784231-30784745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 24

               
               
               Conread position:169-668
               
               
               Cow position:chr26:9113375-9113878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 242

               
               
               Conread position:170-414
               
               
               Cow position:chr26:35369431-35369681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:170-668
               
               
               Cow position:chr26:8871328-8871834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 292

               
               
               Conread position:170-668
               
               
               Cow position:chr26:12587059-12586553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 341

               
               
               Conread position:170-668
               
               
               Cow position:chr26:30587875-30587372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:309
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):99, 13

               
               
               Conread position:171-625
               
               
               Cow position:chr26:33148379-33147917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:296
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):49, 197

               
               
               Conread position:174-387
               
               
               Cow position:chr26:34029472-34029682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):18, 31

               
               
               Conread position:175-668
               
               
               Cow position:chr26:2350698-2350198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:331
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):12, 95

               
               
               Conread position:183-400
               
               
               Cow position:chr26:8086598-8086830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:183-414
               
               
               Cow position:chr26:14895445-14895690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):22, 123

               
               
               Conread position:183-665
               
               
               Cow position:chr26:34013159-34013660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:326
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):23, 221

               
               
               Conread position:183-668
               
               
               Cow position:chr26:19350015-19349520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 161

               
               
               Conread position:188-668
               
               
               Cow position:chr26:5676639-5677132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:325
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):47, 151

               
               
               Conread position:191-378
               
               
               Cow position:chr26:20265416-20265607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:191-384
               
               
               Cow position:chr26:18853728-18853926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:204-668
               
               
               Cow position:chr26:17395376-17394915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:309
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):136, 30

               
               
               Conread position:227-384
               
               
               Cow position:chr26:16725694-16725852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:231-391
               
               
               Cow position:chr26:8911248-8911087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):148, 0

               
               
               Conread position:231-663
               
               
               Cow position:chr26:8282262-8281835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:295
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):276, 134

               
               
               Conread position:235-403
               
               
               Cow position:chr26:4603596-4603427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):151, 0

               
               
               Conread position:235-670
               
               
               Cow position:chr26:21825118-21824679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:285
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):149, 98

               
               
               Conread position:237-414
               
               
               Cow position:chr26:16478894-16479067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:254-504
               
               
               Cow position:chr26:17322219-17322456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):40, 84

               
               
               Conread position:302-668
               
               
               Cow position:chr26:9560955-9560586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):40, 27

               
               
               Conread position:431-668
               
               
               Cow position:chr26:6081669-6081408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:434-663
               
               
               Cow position:chr26:9842669-9842423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):27, 34

               
               
               Conread position:503-668
               
               
               Cow position:chr26:17325975-17326144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):84, 139

               
               
               Conread position:508-665
               
               
               Cow position:chr26:898226-898386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):77, 129

               
               
               Conread position:508-665
               
               
               Cow position:chr26:3250729-3250568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr26:6817480-6817641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr26:14506456-14506295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr26:577473-577309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr26:3226253-3226089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr26:4327610-4327447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr26:14895779-14895943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr26:23888229-23888390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:511-665
               
               
               Cow position:chr26:33934153-33934308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):77, 44

               
               
               Conread position:533-663
               
               
               Cow position:chr26:13801056-13801183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:160-668
               
               
               Cow position:chr27:167500-166989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 28

               
               
               Conread position:160-668
               
               
               Cow position:chr27:25803269-25802751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:335
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):7, 174

               
               
               Conread position:161-670
               
               
               Cow position:chr27:25034984-25034491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:323
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):48, 8

               
               
               Conread position:169-431
               
               
               Cow position:chr27:6160433-6160164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):42, 227

               
               
               Conread position:169-670
               
               
               Cow position:chr27:25084992-25085508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 23

               
               
               Conread position:170-366
               
               
               Cow position:chr27:19260135-19260336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:170-406
               
               
               Cow position:chr27:1900601-1900359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:170-414
               
               
               Cow position:chr27:29056597-29056847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:170-431
               
               
               Cow position:chr27:13898753-13899015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):59, 13

               
               
               Conread position:170-658
               
               
               Cow position:chr27:8199245-8199739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:321
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):17, 9

               
               
               Conread position:170-665
               
               
               Cow position:chr27:798130-797628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 241

               
               
               Conread position:170-668
               
               
               Cow position:chr27:1677135-1676632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 17

               
               
               Conread position:170-668
               
               
               Cow position:chr27:12748474-12748979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 17

               
               
               Conread position:170-668
               
               
               Cow position:chr27:16032966-16032462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 286

               
               
               Conread position:170-668
               
               
               Cow position:chr27:27664434-27664934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:332
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):59, 13

               
               
               Conread position:173-668
               
               
               Cow position:chr27:4980812-4981311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:332
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):14, 49

               
               
               Conread position:179-668
               
               
               Cow position:chr27:3234085-3233583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 158

               
               
               Conread position:183-379
               
               
               Cow position:chr27:28893061-28893259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):53, 25

               
               
               Conread position:183-583
               
               
               Cow position:chr27:19524995-19525400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:258
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):26, 12

               
               
               Conread position:183-668
               
               
               Cow position:chr27:1210797-1211299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:328
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):26, 160

               
               
               Conread position:183-668
               
               
               Cow position:chr27:9331175-9331684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 160

               
               
               Conread position:183-670
               
               
               Cow position:chr27:15274625-15274130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 5

               
               
               Conread position:185-668
               
               
               Cow position:chr27:9991769-9991273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:331
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):27, 8

               
               
               Conread position:185-668
               
               
               Cow position:chr27:26032419-26031930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:321
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):50, 146

               
               
               Conread position:190-376
               
               
               Cow position:chr27:25058360-25058555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:206-670
               
               
               Cow position:chr27:27194877-27194410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:304
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):243, 19

               
               
               Conread position:232-403
               
               
               Cow position:chr27:10327226-10327053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:243-403
               
               
               Cow position:chr27:15373352-15373514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:277-668
               
               
               Cow position:chr27:15035562-15035167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:256
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):113, 231

               
               
               Conread position:300-507
               
               
               Cow position:chr27:6015989-6016181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:505-662
               
               
               Cow position:chr27:16264294-16264132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):82, 15

               
               
               Conread position:508-635
               
               
               Cow position:chr27:23216280-23216149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:508-652
               
               
               Cow position:chr27:15373623-15373772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-663
               
               
               Cow position:chr27:10377518-10377678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr27:160760-160920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):77, 58

               
               
               Conread position:508-665
               
               
               Cow position:chr27:22743616-22743455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr27:11487045-11487197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr27:23319182-23319018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr27:27288274-27288437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:508-669
               
               
               Cow position:chr27:28893384-28893539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:508-670
               
               
               Cow position:chr27:8590854-8591020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:512-668
               
               
               Cow position:chr27:23293322-23293482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:160-380
               
               
               Cow position:chr28:17389872-17390097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):7, 24

               
               
               Conread position:160-664
               
               
               Cow position:chr28:10615531-10615026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:327
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):7, 101

               
               
               Conread position:160-668
               
               
               Cow position:chr28:10580403-10579888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:332
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):27, 19

               
               
               Conread position:169-668
               
               
               Cow position:chr28:2085935-2086448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 175

               
               
               Conread position:169-668
               
               
               Cow position:chr28:12151810-12152307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:336
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):16, 73

               
               
               Conread position:170-352
               
               
               Cow position:chr28:22041804-22041617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:170-402
               
               
               Cow position:chr28:10645953-10645719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):61, 13

               
               
               Conread position:170-403
               
               
               Cow position:chr28:7741916-7742153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):63, 46

               
               
               Conread position:170-432
               
               
               Cow position:chr28:698760-699024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):11, 24

               
               
               Conread position:170-615
               
               
               Cow position:chr28:17381389-17380938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:291
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):59, 30

               
               
               Conread position:170-622
               
               
               Cow position:chr28:9288431-9288887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:297
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):50, 238

               
               
               Conread position:170-665
               
               
               Cow position:chr28:484112-483610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 27

               
               
               Conread position:170-665
               
               
               Cow position:chr28:1459576-1460079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 249

               
               
               Conread position:170-665
               
               
               Cow position:chr28:6537329-6536821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 441

               
               
               Conread position:170-668
               
               
               Cow position:chr28:3190771-3190265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 13

               
               
               Conread position:170-668
               
               
               Cow position:chr28:5750222-5749715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:331
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):59, 152

               
               
               Conread position:170-668
               
               
               Cow position:chr28:7003479-7003983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 9

               
               
               Conread position:170-668
               
               
               Cow position:chr28:8380518-8381023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:328
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):17, 13

               
               
               Conread position:170-668
               
               
               Cow position:chr28:24590338-24590842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 207

               
               
               Conread position:170-668
               
               
               Cow position:chr28:26424777-26424274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:321
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):56, 15

               
               
               Conread position:170-672
               
               
               Cow position:chr28:33638023-33638530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:530
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 13

               
               
               Conread position:171-668
               
               
               Cow position:chr28:6778459-6777954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 251

               
               
               Conread position:173-649
               
               
               Cow position:chr28:7059180-7058700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 242

               
               
               Conread position:173-668
               
               
               Cow position:chr28:31850466-31849948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 31

               
               
               Conread position:174-402
               
               
               Cow position:chr28:7707204-7706973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):59, 11

               
               
               Conread position:177-670
               
               
               Cow position:chr28:11504752-11504252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 195

               
               
               Conread position:179-403
               
               
               Cow position:chr28:33253795-33254034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):30, 164

               
               
               Conread position:179-670
               
               
               Cow position:chr28:32304757-32304263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:334
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):10, 205

               
               
               Conread position:181-668
               
               
               Cow position:chr28:1166408-1165911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:330
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):28, 160

               
               
               Conread position:182-377
               
               
               Cow position:chr28:15587560-15587761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):53, 98

               
               
               Conread position:183-349
               
               
               Cow position:chr28:9180102-9180274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):26, 162

               
               
               Conread position:183-378
               
               
               Cow position:chr28:18100010-18099805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):18, 81

               
               
               Conread position:183-380
               
               
               Cow position:chr28:24559090-24559296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):29, 123

               
               
               Conread position:183-411
               
               
               Cow position:chr28:11489390-11489153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):28, 17

               
               
               Conread position:183-433
               
               
               Cow position:chr28:29821484-29821736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):18, 91

               
               
               Conread position:183-438
               
               
               Cow position:chr28:5803507-5803773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:201
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):23, 162

               
               
               Conread position:183-668
               
               
               Cow position:chr28:784147-784649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:325
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):49, 25

               
               
               Conread position:183-668
               
               
               Cow position:chr28:1506351-1506847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:324
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):26, 328

               
               
               Conread position:183-668
               
               
               Cow position:chr28:1954845-1955344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 24

               
               
               Conread position:183-668
               
               
               Cow position:chr28:12408740-12408236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 152

               
               
               Conread position:183-668
               
               
               Cow position:chr28:13461456-13461948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:333
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):26, 160

               
               
               Conread position:183-668
               
               
               Cow position:chr28:14703898-14703397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:324
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):26, 284

               
               
               Conread position:183-668
               
               
               Cow position:chr28:15034626-15034124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:330
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):26, 230

               
               
               Conread position:184-659
               
               
               Cow position:chr28:10496004-10495524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:324
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):16, 26

               
               
               Conread position:185-668
               
               
               Cow position:chr28:1813445-1812953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:332
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):24, 8

               
               
               Conread position:188-429
               
               
               Cow position:chr28:1765474-1765725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):49, 157

               
               
               Conread position:189-385
               
               
               Cow position:chr28:7827481-7827682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):46, 19

               
               
               Conread position:191-479
               
               
               Cow position:chr28:8784807-8785088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):43, 115

               
               
               Conread position:191-670
               
               
               Cow position:chr28:21360994-21361483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:320
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):34, 155

               
               
               Conread position:192-360
               
               
               Cow position:chr28:6786753-6786925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):43, 147

               
               
               Conread position:204-378
               
               
               Cow position:chr28:23023742-23023920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:204-396
               
               
               Cow position:chr28:13604272-13604469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):35, 121

               
               
               Conread position:205-663
               
               
               Cow position:chr28:22231774-22231310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:304
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):26, 94

               
               
               Conread position:208-668
               
               
               Cow position:chr28:8719429-8718978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:308
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):45, 24

               
               
               Conread position:229-401
               
               
               Cow position:chr28:9295809-9295640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):46, 18

               
               
               Conread position:231-470
               
               
               Cow position:chr28:21566992-21567222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:232-668
               
               
               Cow position:chr28:24669146-24669582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:290
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):155, 70

               
               
               Conread position:234-384
               
               
               Cow position:chr28:10650978-10650828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:236-668
               
               
               Cow position:chr28:31591111-31591544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:281
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):150, 171

               
               
               Conread position:271-665
               
               
               Cow position:chr28:24884441-24884829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:271
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):124, 180

               
               
               Conread position:351-668
               
               
               Cow position:chr28:8785089-8785421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 55

               
               
               Conread position:413-663
               
               
               Cow position:chr28:759491-759238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):9, 83

               
               
               Conread position:413-670
               
               
               Cow position:chr28:28440451-28440724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:434-668
               
               
               Cow position:chr28:7742161-7742413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:434-670
               
               
               Cow position:chr28:11953709-11953951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):64, 88

               
               
               Conread position:508-658
               
               
               Cow position:chr28:13604781-13604935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr28:17630922-17631083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr28:21378348-21378510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr28:30805583-30805744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr28:308019-307855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr28:17665504-17665341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr28:23311485-23311329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:508-670
               
               
               Cow position:chr28:2121276-2121442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):79, 59

               
               
               Conread position:509-662
               
               
               Cow position:chr28:17390227-17390384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:509-665
               
               
               Cow position:chr28:15998927-15999087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:509-668
               
               
               Cow position:chr28:5209935-5210098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:510-668
               
               
               Cow position:chr28:1216014-1215854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:510-668
               
               
               Cow position:chr28:22259332-22259167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:512-665
               
               
               Cow position:chr28:10293286-10293447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):24, 10

               
               
               Conread position:512-669
               
               
               Cow position:chr28:21567724-21567881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):76, 14

               
               
               Conread position:515-668
               
               
               Cow position:chr28:9295256-9295101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):72, 22

               
               
               Conread position:515-670
               
               
               Cow position:chr28:5766570-5766727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):34, 30

               
               
               Conread position:140-433
               
               
               Cow position:chr29:3176035-3175743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):14, 60

               
               
               Conread position:157-420
               
               
               Cow position:chr29:14587350-14587620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):14, 27

               
               
               Conread position:159-431
               
               
               Cow position:chr29:5959011-5959287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):12, 21

               
               
               Conread position:160-399
               
               
               Cow position:chr29:45461181-45461426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):7, 24

               
               
               Conread position:160-404
               
               
               Cow position:chr29:32892212-32892463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):11, 108

               
               
               Conread position:160-668
               
               
               Cow position:chr29:7845824-7846341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 297

               
               
               Conread position:160-668
               
               
               Cow position:chr29:32558317-32557801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 262

               
               
               Conread position:165-665
               
               
               Cow position:chr29:9641346-9640832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:334
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):70, 22

               
               
               Conread position:169-430
               
               
               Cow position:chr29:24335566-24335291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):33, 48

               
               
               Conread position:169-668
               
               
               Cow position:chr29:16345647-16346152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:342
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):16, 99

               
               
               Conread position:170-352
               
               
               Cow position:chr29:29502814-29502627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:170-378
               
               
               Cow position:chr29:27979475-27979263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):50, 138

               
               
               Conread position:170-431
               
               
               Cow position:chr29:40501558-40501295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):59, 13

               
               
               Conread position:170-610
               
               
               Cow position:chr29:27180308-27179860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:284
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):50, 249

               
               
               Conread position:170-656
               
               
               Cow position:chr29:5236466-5236965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:320
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):17, 13

               
               
               Conread position:170-665
               
               
               Cow position:chr29:2101284-2101787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:325
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):59, 164

               
               
               Conread position:170-665
               
               
               Cow position:chr29:10022887-10022384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 249

               
               
               Conread position:170-665
               
               
               Cow position:chr29:21431407-21430907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 249

               
               
               Conread position:170-665
               
               
               Cow position:chr29:34798366-34797861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:328
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):17, 13

               
               
               Conread position:170-665
               
               
               Cow position:chr29:38207219-38206715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 241

               
               
               Conread position:170-668
               
               
               Cow position:chr29:7429679-7429169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:331
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):62, 13

               
               
               Conread position:170-668
               
               
               Cow position:chr29:13622413-13621907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 241

               
               
               Conread position:170-668
               
               
               Cow position:chr29:19526841-19526335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 229

               
               
               Conread position:170-668
               
               
               Cow position:chr29:19621832-19621316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:347
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):48, 13

               
               
               Conread position:170-668
               
               
               Cow position:chr29:19655069-19655569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:331
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):59, 13

               
               
               Conread position:170-668
               
               
               Cow position:chr29:26163389-26162885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:325
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):17, 165

               
               
               Conread position:170-668
               
               
               Cow position:chr29:35298355-35298861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 229

               
               
               Conread position:170-668
               
               
               Cow position:chr29:39078266-39077761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:328
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):26, 13

               
               
               Conread position:171-665
               
               
               Cow position:chr29:15946380-15945873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:337
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):58, 12

               
               
               Conread position:171-668
               
               
               Cow position:chr29:14210105-14209600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:318
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):58, 16

               
               
               Conread position:171-668
               
               
               Cow position:chr29:20252604-20253119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:334
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):26, 170

               
               
               Conread position:172-668
               
               
               Cow position:chr29:25931083-25930568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:345
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):37, 171

               
               
               Conread position:173-382
               
               
               Cow position:chr29:14112988-14113204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):22, 127

               
               
               Conread position:174-668
               
               
               Cow position:chr29:13018147-13018641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:329
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):55, 93

               
               
               Conread position:176-332
               
               
               Cow position:chr29:12793696-12793850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:180-668
               
               
               Cow position:chr29:32541548-32542045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:322
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):28, 155

               
               
               Conread position:183-414
               
               
               Cow position:chr29:23977572-23977818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):26, 160

               
               
               Conread position:183-509
               
               
               Cow position:chr29:4517013-4517367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):29, 111

               
               
               Conread position:183-662
               
               
               Cow position:chr29:409799-409316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:314
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):26, 95

               
               
               Conread position:183-665
               
               
               Cow position:chr29:2839893-2839393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:325
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):26, 147

               
               
               Conread position:183-665
               
               
               Cow position:chr29:31182857-31183350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 241

               
               
               Conread position:183-668
               
               
               Cow position:chr29:47006-46511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:320
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):52, 42

               
               
               Conread position:183-668
               
               
               Cow position:chr29:2691612-2692113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:328
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):26, 159

               
               
               Conread position:183-668
               
               
               Cow position:chr29:6264551-6264052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 160

               
               
               Conread position:183-668
               
               
               Cow position:chr29:43324968-43325465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:325
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):26, 157

               
               
               Conread position:184-668
               
               
               Cow position:chr29:13583531-13584032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:334
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):25, 247

               
               
               Conread position:185-402
               
               
               Cow position:chr29:4633175-4632952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):51, 14

               
               
               Conread position:204-384
               
               
               Cow position:chr29:36634896-36634719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:204-402
               
               
               Cow position:chr29:19954109-19954303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):178, 15

               
               
               Conread position:208-659
               
               
               Cow position:chr29:13851381-13850941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:292
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):265, 26

               
               
               Conread position:231-384
               
               
               Cow position:chr29:14084619-14084466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):110, 103

               
               
               Conread position:231-663
               
               
               Cow position:chr29:2948869-2948428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:288
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):111, 99

               
               
               Conread position:234-669
               
               
               Cow position:chr29:2746948-2746498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:309
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):148, 132

               
               
               Conread position:236-432
               
               
               Cow position:chr29:2465360-2465163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):98, 81

               
               
               Conread position:236-668
               
               
               Cow position:chr29:609132-608697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 170

               
               
               Conread position:236-668
               
               
               Cow position:chr29:19889102-19889531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:278
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):157, 184

               
               
               Conread position:237-504
               
               
               Cow position:chr29:14098263-14098519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):117, 18

               
               
               Conread position:238-509
               
               
               Cow position:chr29:8625690-8625428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):139, 91

               
               
               Conread position:251-662
               
               
               Cow position:chr29:37044706-37044315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:259
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):341, 15

               
               
               Conread position:263-506
               
               
               Cow position:chr29:17151790-17152015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:267-668
               
               
               Cow position:chr29:10645863-10645459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:256
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):73, 62

               
               
               Conread position:285-670
               
               
               Cow position:chr29:21422129-21421747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:252
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):105, 7

               
               
               Conread position:433-668
               
               
               Cow position:chr29:16688526-16688781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):59, 186

               
               
               Conread position:508-659
               
               
               Cow position:chr29:4517387-4517541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):78, 150

               
               
               Conread position:508-663
               
               
               Cow position:chr29:34526402-34526562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):94, 12

               
               
               Conread position:508-665
               
               
               Cow position:chr29:13922287-13922448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr29:27978043-27977880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr29:31122615-31122779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr29:2465089-2464926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):79, 55

               
               
               Conread position:508-668
               
               
               Cow position:chr29:5980927-5980762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):51, 96

               
               
               Conread position:508-668
               
               
               Cow position:chr29:8625408-8625241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr29:9082098-9081935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):75, 14

               
               
               Conread position:508-668
               
               
               Cow position:chr29:12794265-12794428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:138
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr29:16014517-16014350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr29:17406911-17407076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr29:35275408-35275245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):79, 156

               
               
               Conread position:508-668
               
               
               Cow position:chr29:40501223-40501063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:508-670
               
               
               Cow position:chr29:29617522-29617355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:509-668
               
               
               Cow position:chr29:38228765-38228926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):78, 37

               
               
               Conread position:510-665
               
               
               Cow position:chr29:25936392-25936547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:510-668
               
               
               Cow position:chr29:42805201-42805359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):12, 95

               
               
               Conread position:511-670
               
               
               Cow position:chr29:21536064-21536226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):76, 90

               
               
               Conread position:515-668
               
               
               Cow position:chr29:15996591-15996434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:515-670
               
               
               Cow position:chr29:14082931-14082775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:159-414
               
               
               Cow position:chr3:46503900-46504160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):8, 27

               
               
               Conread position:160-380
               
               
               Cow position:chr3:2367987-2367762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):11, 138

               
               
               Conread position:160-384
               
               
               Cow position:chr3:56327458-56327687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):7, 20

               
               
               Conread position:160-414
               
               
               Cow position:chr3:31416366-31416627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):7, 109

               
               
               Conread position:160-668
               
               
               Cow position:chr3:18860766-18861288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 253

               
               
               Conread position:160-668
               
               
               Cow position:chr3:36863108-36862590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:339
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):11, 263

               
               
               Conread position:160-668
               
               
               Cow position:chr3:53516950-53517476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:349
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):7, 184

               
               
               Conread position:166-402
               
               
               Cow position:chr3:16076702-16076946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):45, 232

               
               
               Conread position:169-367
               
               
               Cow position:chr3:33843470-33843267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):62, 16

               
               
               Conread position:169-380
               
               
               Cow position:chr3:67769171-67769384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):55, 16

               
               
               Conread position:169-403
               
               
               Cow position:chr3:58948887-58949129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):40, 13

               
               
               Conread position:169-407
               
               
               Cow position:chr3:45034099-45034343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):51, 230

               
               
               Conread position:169-431
               
               
               Cow position:chr3:56146663-56146932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):40, 166

               
               
               Conread position:169-665
               
               
               Cow position:chr3:24644573-24645075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 34

               
               
               Conread position:169-665
               
               
               Cow position:chr3:50916694-50917196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:330
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):40, 177

               
               
               Conread position:169-668
               
               
               Cow position:chr3:7247893-7248398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:330
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):18, 204

               
               
               Conread position:169-668
               
               
               Cow position:chr3:19799812-19799316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:324
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):217, 18

               
               
               Conread position:170-378
               
               
               Cow position:chr3:72671179-72670967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:170-384
               
               
               Cow position:chr3:1742692-1742911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:170-384
               
               
               Cow position:chr3:27919788-27920007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:170-400
               
               
               Cow position:chr3:47080049-47079813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:170-414
               
               
               Cow position:chr3:3840156-3839907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):59, 211

               
               
               Conread position:170-414
               
               
               Cow position:chr3:51364425-51364178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):40, 33

               
               
               Conread position:170-610
               
               
               Cow position:chr3:2918830-2919273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:282
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):50, 127

               
               
               Conread position:170-665
               
               
               Cow position:chr3:4287450-4287948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:327
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):50, 99

               
               
               Conread position:170-665
               
               
               Cow position:chr3:29329929-29329426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 241

               
               
               Conread position:170-668
               
               
               Cow position:chr3:2870149-2870655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 242

               
               
               Conread position:170-668
               
               
               Cow position:chr3:6783728-6784232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 244

               
               
               Conread position:170-668
               
               
               Cow position:chr3:7157359-7156852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 253

               
               
               Conread position:170-668
               
               
               Cow position:chr3:18812859-18813366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:326
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):62, 158

               
               
               Conread position:170-668
               
               
               Cow position:chr3:19945605-19946113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:326
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):39, 233

               
               
               Conread position:170-668
               
               
               Cow position:chr3:23206513-23206009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:322
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):17, 13

               
               
               Conread position:170-668
               
               
               Cow position:chr3:29575763-29575254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:326
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):49, 341

               
               
               Conread position:170-668
               
               
               Cow position:chr3:30315909-30316415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:315
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):59, 162

               
               
               Conread position:170-668
               
               
               Cow position:chr3:32621681-32621179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:330
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):50, 128

               
               
               Conread position:170-668
               
               
               Cow position:chr3:37970407-37970913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 286

               
               
               Conread position:170-668
               
               
               Cow position:chr3:40338787-40338281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 292

               
               
               Conread position:170-668
               
               
               Cow position:chr3:41209241-41208746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 216

               
               
               Conread position:170-668
               
               
               Cow position:chr3:49136204-49135698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:333
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):17, 13

               
               
               Conread position:170-668
               
               
               Cow position:chr3:56295547-56296052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 27

               
               
               Conread position:170-668
               
               
               Cow position:chr3:69932473-69931969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:325
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):26, 13

               
               
               Conread position:170-668
               
               
               Cow position:chr3:74058887-74059392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 9

               
               
               Conread position:171-665
               
               
               Cow position:chr3:57483361-57482861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:326
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):58, 24

               
               
               Conread position:171-668
               
               
               Cow position:chr3:49543845-49543345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:320
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):62, 32

               
               
               Conread position:171-668
               
               
               Cow position:chr3:72631425-72631920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:316
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):58, 26

               
               
               Conread position:172-431
               
               
               Cow position:chr3:42448479-42448743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):60, 15

               
               
               Conread position:172-665
               
               
               Cow position:chr3:19720295-19719795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 11

               
               
               Conread position:174-380
               
               
               Cow position:chr3:20382392-20382612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:175-403
               
               
               Cow position:chr3:48229153-48228916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):61, 211

               
               
               Conread position:177-668
               
               
               Cow position:chr3:27864538-27865037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:329
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):20, 225

               
               
               Conread position:179-438
               
               
               Cow position:chr3:67164646-67164913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):56, 84

               
               
               Conread position:180-668
               
               
               Cow position:chr3:19880011-19880510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:322
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):63, 242

               
               
               Conread position:182-401
               
               
               Cow position:chr3:18943386-18943614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):28, 85

               
               
               Conread position:182-414
               
               
               Cow position:chr3:36877288-36877050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):27, 81

               
               
               Conread position:183-382
               
               
               Cow position:chr3:19889282-19889083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):43, 156

               
               
               Conread position:183-395
               
               
               Cow position:chr3:47087661-47087874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):43, 131

               
               
               Conread position:183-403
               
               
               Cow position:chr3:52653296-52653063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:183-403
               
               
               Cow position:chr3:68872390-68872155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):29, 225

               
               
               Conread position:183-414
               
               
               Cow position:chr3:66889602-66889359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:183-506
               
               
               Cow position:chr3:46017419-46017721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):99, 49

               
               
               Conread position:183-631
               
               
               Cow position:chr3:37626362-37626807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:295
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):29, 76

               
               
               Conread position:183-654
               
               
               Cow position:chr3:56146668-56147156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:325
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):26, 86

               
               
               Conread position:183-663
               
               
               Cow position:chr3:64026770-64026276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:332
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):26, 142

               
               
               Conread position:183-665
               
               
               Cow position:chr3:34505979-34505489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 228

               
               
               Conread position:183-665
               
               
               Cow position:chr3:74851763-74851285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:316
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):192, 37

               
               
               Conread position:183-668
               
               
               Cow position:chr3:595501-595993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:323
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):26, 10

               
               
               Conread position:183-668
               
               
               Cow position:chr3:2709502-2709003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:330
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):29, 152

               
               
               Conread position:183-668
               
               
               Cow position:chr3:16224250-16224759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 5

               
               
               Conread position:183-668
               
               
               Cow position:chr3:21181328-21180832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:325
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):50, 25

               
               
               Conread position:183-668
               
               
               Cow position:chr3:34029556-34029056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:327
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):26, 160

               
               
               Conread position:183-668
               
               
               Cow position:chr3:40824757-40825256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:329
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):26, 145

               
               
               Conread position:183-668
               
               
               Cow position:chr3:44925427-44925930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 282

               
               
               Conread position:183-668
               
               
               Cow position:chr3:68698608-68698109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 219

               
               
               Conread position:184-509
               
               
               Cow position:chr3:84197185-84197515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:242
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):55, 167

               
               
               Conread position:184-668
               
               
               Cow position:chr3:19755596-19755096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:327
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):25, 143

               
               
               Conread position:185-363
               
               
               Cow position:chr3:64685701-64685517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):24, 58

               
               
               Conread position:185-421
               
               
               Cow position:chr3:56100318-56100073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):50, 39

               
               
               Conread position:185-613
               
               
               Cow position:chr3:32200384-32200825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:283
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):27, 214

               
               
               Conread position:185-670
               
               
               Cow position:chr3:54291212-54290720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 30

               
               
               Conread position:187-652
               
               
               Cow position:chr3:15054334-15053860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 42

               
               
               Conread position:188-414
               
               
               Cow position:chr3:40103846-40103617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):39, 185

               
               
               Conread position:188-509
               
               
               Cow position:chr3:70888649-70888970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:230
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):198, 48

               
               
               Conread position:189-607
               
               
               Cow position:chr3:3524382-3524817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:289
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):20, 211

               
               
               Conread position:189-668
               
               
               Cow position:chr3:4736542-4736068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:318
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):32, 87

               
               
               Conread position:200-668
               
               
               Cow position:chr3:43191901-43191425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:307
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):32, 134

               
               
               Conread position:202-504
               
               
               Cow position:chr3:42051212-42050901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):14, 135

               
               
               Conread position:204-378
               
               
               Cow position:chr3:63002160-63001988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:204-669
               
               
               Cow position:chr3:63240843-63240374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:304
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):182, 37

               
               
               Conread position:205-665
               
               
               Cow position:chr3:24444709-24444239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:308
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):30, 121

               
               
               Conread position:205-670
               
               
               Cow position:chr3:33634642-33635107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 94

               
               
               Conread position:207-378
               
               
               Cow position:chr3:42053276-42053105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):85, 40

               
               
               Conread position:208-403
               
               
               Cow position:chr3:2906359-2906157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:231-438
               
               
               Cow position:chr3:34090061-34089853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):148, 162

               
               
               Conread position:231-668
               
               
               Cow position:chr3:6687217-6687661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:289
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):158, 39

               
               
               Conread position:231-670
               
               
               Cow position:chr3:65208612-65209045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:289
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):238, 135

               
               
               Conread position:232-402
               
               
               Cow position:chr3:8438468-8438639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):158, 0

               
               
               Conread position:232-668
               
               
               Cow position:chr3:53412558-53412968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:289
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):168, 30

               
               
               Conread position:236-396
               
               
               Cow position:chr3:56338841-56338680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):105, 93

               
               
               Conread position:236-652
               
               
               Cow position:chr3:51857259-51856840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):150, 170

               
               
               Conread position:236-668
               
               
               Cow position:chr3:64652042-64652472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:286
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):101, 19

               
               
               Conread position:237-668
               
               
               Cow position:chr3:68891138-68890710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 171

               
               
               Conread position:242-402
               
               
               Cow position:chr3:80480301-80480142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):144, 14

               
               
               Conread position:245-414
               
               
               Cow position:chr3:19940371-19940539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):149, 114

               
               
               Conread position:266-668
               
               
               Cow position:chr3:59863024-59863429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:258
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):75, 63

               
               
               Conread position:278-667
               
               
               Cow position:chr3:38868061-38868457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:257
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):62, 51

               
               
               Conread position:280-670
               
               
               Cow position:chr3:29580085-29580475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:278
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):216, 106

               
               
               Conread position:417-668
               
               
               Cow position:chr3:31385332-31385090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):32, 23

               
               
               Conread position:428-668
               
               
               Cow position:chr3:19940531-19940791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:433-668
               
               
               Cow position:chr3:7478308-7478060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:433-668
               
               
               Cow position:chr3:32704808-32704567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:178
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:435-631
               
               
               Cow position:chr3:2367730-2367525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:435-665
               
               
               Cow position:chr3:28669696-28669945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:443-670
               
               
               Cow position:chr3:71141187-71140951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:183
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:506-665
               
               
               Cow position:chr3:3783443-3783606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:506-665
               
               
               Cow position:chr3:3787303-3787466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:508-662
               
               
               Cow position:chr3:2853699-2853543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):86, 12

               
               
               Conread position:508-665
               
               
               Cow position:chr3:2508982-2508823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr3:26683296-26683457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr3:26722884-26723043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr3:46504252-46504413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr3:54740657-54740496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr3:58784453-58784292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr3:1886724-1886559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr3:3839815-3839659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):79, 115

               
               
               Conread position:508-668
               
               
               Cow position:chr3:3937562-3937726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):77, 131

               
               
               Conread position:508-668
               
               
               Cow position:chr3:18760696-18760532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr3:19888958-19888798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):79, 123

               
               
               Conread position:508-668
               
               
               Cow position:chr3:29190373-29190208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr3:30330440-30330276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr3:30617221-30617061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):79, 12

               
               
               Conread position:508-668
               
               
               Cow position:chr3:39024575-39024739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr3:56327822-56327984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):79, 20

               
               
               Conread position:508-668
               
               
               Cow position:chr3:64685400-64685236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):79, 93

               
               
               Conread position:508-668
               
               
               Cow position:chr3:64824027-64824187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr3:66889265-66889102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):79, 93

               
               
               Conread position:508-668
               
               
               Cow position:chr3:72670852-72670690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):84, 64

               
               
               Conread position:508-668
               
               
               Cow position:chr3:77425406-77425570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-670
               
               
               Cow position:chr3:54654485-54654651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:509-665
               
               
               Cow position:chr3:41081869-41082029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:509-665
               
               
               Cow position:chr3:48844698-48844858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:509-668
               
               
               Cow position:chr3:26744155-26743992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:510-665
               
               
               Cow position:chr3:45976202-45976360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:511-670
               
               
               Cow position:chr3:24587848-24587688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):80, 12

               
               
               Conread position:512-665
               
               
               Cow position:chr3:2919325-2919482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:512-670
               
               
               Cow position:chr3:53049125-53048964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):14, 107

               
               
               Conread position:514-668
               
               
               Cow position:chr3:20382814-20382972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:515-670
               
               
               Cow position:chr3:54864277-54864123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:525-658
               
               
               Cow position:chr3:14861933-14862069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):59, 12

               
               
               Conread position:547-670
               
               
               Cow position:chr3:3982372-3982497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:152-494
               
               
               Cow position:chr4:41978249-41977914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:230
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):15, 8

               
               
               Conread position:160-384
               
               
               Cow position:chr4:3126963-3127194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:160-414
               
               
               Cow position:chr4:1952413-1952153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):27, 19

               
               
               Conread position:160-664
               
               
               Cow position:chr4:1049106-1048597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:328
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):7, 20

               
               
               Conread position:165-665
               
               
               Cow position:chr4:13958332-13958831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 231

               
               
               Conread position:169-414
               
               
               Cow position:chr4:34178086-34177835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):39, 14

               
               
               Conread position:169-494
               
               
               Cow position:chr4:21258311-21258647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):66, 176

               
               
               Conread position:169-638
               
               
               Cow position:chr4:14755517-14755037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:310
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):40, 250

               
               
               Conread position:169-668
               
               
               Cow position:chr4:17924808-17924291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:341
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):13, 175

               
               
               Conread position:170-333
               
               
               Cow position:chr4:45106630-45106798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:170-364
               
               
               Cow position:chr4:28653328-28653132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):65, 13

               
               
               Conread position:170-384
               
               
               Cow position:chr4:18338018-18338237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):50, 161

               
               
               Conread position:170-384
               
               
               Cow position:chr4:41955927-41956146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:170-664
               
               
               Cow position:chr4:17092698-17092201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 177

               
               
               Conread position:170-665
               
               
               Cow position:chr4:5881323-5881830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:334
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):52, 100

               
               
               Conread position:170-665
               
               
               Cow position:chr4:14386985-14387483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 243

               
               
               Conread position:170-665
               
               
               Cow position:chr4:17502167-17501664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 249

               
               
               Conread position:170-665
               
               
               Cow position:chr4:30472377-30472880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 238

               
               
               Conread position:170-665
               
               
               Cow position:chr4:33071670-33071173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:322
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):17, 13

               
               
               Conread position:170-665
               
               
               Cow position:chr4:36897540-36898040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:332
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):17, 8

               
               
               Conread position:170-665
               
               
               Cow position:chr4:43318471-43317969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 13

               
               
               Conread position:170-668
               
               
               Cow position:chr4:99054-98543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 202

               
               
               Conread position:170-668
               
               
               Cow position:chr4:160323-160827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:324
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):14, 325

               
               
               Conread position:170-668
               
               
               Cow position:chr4:604794-605286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 241

               
               
               Conread position:170-668
               
               
               Cow position:chr4:1929471-1928969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 27

               
               
               Conread position:170-668
               
               
               Cow position:chr4:3356769-3356264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:325
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):59, 287

               
               
               Conread position:170-668
               
               
               Cow position:chr4:4417221-4417720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:324
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):50, 119

               
               
               Conread position:170-668
               
               
               Cow position:chr4:5443661-5443155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 248

               
               
               Conread position:170-668
               
               
               Cow position:chr4:6567543-6568049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 286

               
               
               Conread position:170-668
               
               
               Cow position:chr4:13494494-13495002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:334
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):59, 13

               
               
               Conread position:170-668
               
               
               Cow position:chr4:16060443-16060945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:323
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):51, 97

               
               
               Conread position:170-668
               
               
               Cow position:chr4:16639774-16640278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:322
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):62, 164

               
               
               Conread position:170-668
               
               
               Cow position:chr4:33022474-33021969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 230

               
               
               Conread position:170-668
               
               
               Cow position:chr4:41960064-41960570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 173

               
               
               Conread position:170-668
               
               
               Cow position:chr4:44780056-44779556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 161

               
               
               Conread position:171-656
               
               
               Cow position:chr4:9355544-9356037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 240

               
               
               Conread position:172-665
               
               
               Cow position:chr4:25598319-25597819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:326
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):15, 7

               
               
               Conread position:172-668
               
               
               Cow position:chr4:6865341-6864838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 111

               
               
               Conread position:173-668
               
               
               Cow position:chr4:32213339-32213843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 218

               
               
               Conread position:173-668
               
               
               Cow position:chr4:48028021-48028522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:327
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):11, 168

               
               
               Conread position:178-506
               
               
               Cow position:chr4:52962975-52962653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):57, 35

               
               
               Conread position:179-668
               
               
               Cow position:chr4:18102491-18101992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 186

               
               
               Conread position:183-401
               
               
               Cow position:chr4:20067555-20067326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):52, 220

               
               
               Conread position:183-403
               
               
               Cow position:chr4:19094152-19094380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):40, 16

               
               
               Conread position:183-403
               
               
               Cow position:chr4:67682365-67682600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):26, 160

               
               
               Conread position:183-411
               
               
               Cow position:chr4:964131-963906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):43, 57

               
               
               Conread position:183-631
               
               
               Cow position:chr4:57985160-57985620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:304
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):26, 160

               
               
               Conread position:183-665
               
               
               Cow position:chr4:34221912-34222410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 182

               
               
               Conread position:183-668
               
               
               Cow position:chr4:18423348-18422855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:336
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):26, 56

               
               
               Conread position:183-668
               
               
               Cow position:chr4:33494723-33495226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:328
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):26, 160

               
               
               Conread position:183-670
               
               
               Cow position:chr4:28832888-28833396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:329
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):24, 72

               
               
               Conread position:184-665
               
               
               Cow position:chr4:65916445-65916918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 115

               
               
               Conread position:184-668
               
               
               Cow position:chr4:43882279-43882778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:327
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):51, 24

               
               
               Conread position:185-376
               
               
               Cow position:chr4:13871150-13871344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):27, 8

               
               
               Conread position:185-665
               
               
               Cow position:chr4:50975796-50976277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 8

               
               
               Conread position:185-668
               
               
               Cow position:chr4:49716949-49717445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 8

               
               
               Conread position:185-670
               
               
               Cow position:chr4:8702733-8703225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:316
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):19, 8

               
               
               Conread position:188-668
               
               
               Cow position:chr4:26876610-26876118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:318
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):21, 123

               
               
               Conread position:188-668
               
               
               Cow position:chr4:60045761-60045271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:318
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):30, 185

               
               
               Conread position:193-403
               
               
               Cow position:chr4:20604871-20605085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):18, 126

               
               
               Conread position:194-414
               
               
               Cow position:chr4:17244295-17244520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:204-668
               
               
               Cow position:chr4:530623-531088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 9

               
               
               Conread position:204-668
               
               
               Cow position:chr4:44899481-44899941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 58

               
               
               Conread position:204-670
               
               
               Cow position:chr4:6206807-6207269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:311
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):20, 61

               
               
               Conread position:208-668
               
               
               Cow position:chr4:27335142-27335608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 182

               
               
               Conread position:209-414
               
               
               Cow position:chr4:827413-827622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:211-403
               
               
               Cow position:chr4:14139584-14139774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):15, 168

               
               
               Conread position:213-414
               
               
               Cow position:chr4:22742638-22742843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):19, 119

               
               
               Conread position:231-367
               
               
               Cow position:chr4:27851480-27851616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:231-380
               
               
               Cow position:chr4:37988569-37988717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:232-380
               
               
               Cow position:chr4:61986044-61985896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:234-402
               
               
               Cow position:chr4:47522591-47522751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):150, 94

               
               
               Conread position:235-672
               
               
               Cow position:chr4:19005099-19004657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 229

               
               
               Conread position:236-639
               
               
               Cow position:chr4:20236163-20235751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:263
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):150, 178

               
               
               Conread position:236-665
               
               
               Cow position:chr4:6267956-6267525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:285
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):150, 233

               
               
               Conread position:238-668
               
               
               Cow position:chr4:10882785-10883207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:291
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):96, 91

               
               
               Conread position:241-665
               
               
               Cow position:chr4:20241759-20242192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:278
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):149, 176

               
               
               Conread position:263-404
               
               
               Cow position:chr4:1366745-1366604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):7, 67

               
               
               Conread position:273-403
               
               
               Cow position:chr4:4178653-4178781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):113, 79

               
               
               Conread position:305-668
               
               
               Cow position:chr4:43898238-43897867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:243
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):12, 18

               
               
               Conread position:432-670
               
               
               Cow position:chr4:20605088-20605322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):174, 83

               
               
               Conread position:508-665
               
               
               Cow position:chr4:827714-827875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr4:1366504-1366345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr4:7730947-7730786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr4:15460759-15460598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr4:27655078-27654917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr4:28652989-28652828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr4:34622292-34622137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr4:65222254-65222093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr4:3127316-3127481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr4:7509219-7509383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr4:8670826-8670992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):23, 12

               
               
               Conread position:508-668
               
               
               Cow position:chr4:12239728-12239570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr4:12607394-12607229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr4:16361701-16361866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr4:18338359-18338523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr4:28149916-28150080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr4:41956269-41956434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-670
               
               
               Cow position:chr4:4179691-4179856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:508-670
               
               
               Cow position:chr4:19094480-19094640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):76, 13

               
               
               Conread position:508-670
               
               
               Cow position:chr4:25912941-25913106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):14, 52

               
               
               Conread position:511-668
               
               
               Cow position:chr4:493183-493026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:511-670
               
               
               Cow position:chr4:44741755-44741592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:537-665
               
               
               Cow position:chr4:14564375-14564242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:538-670
               
               
               Cow position:chr4:41297111-41296976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):47, 70

               
               
               Conread position:139-668
               
               
               Cow position:chr5:51744508-51745038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:545
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 23

               
               
               Conread position:160-384
               
               
               Cow position:chr5:4756927-4756697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:160-403
               
               
               Cow position:chr5:23831065-23830815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):11, 67

               
               
               Conread position:160-639
               
               
               Cow position:chr5:27197865-27198348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:302
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):11, 296

               
               
               Conread position:160-665
               
               
               Cow position:chr5:307157-306644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 138

               
               
               Conread position:160-668
               
               
               Cow position:chr5:10855561-10855047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:528
               
               
               Alignm identity:337
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):7, 24

               
               
               Conread position:166-668
               
               
               Cow position:chr5:2975056-2975562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:326
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):25, 230

               
               
               Conread position:169-367
               
               
               Cow position:chr5:53946088-53946297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):40, 162

               
               
               Conread position:169-388
               
               
               Cow position:chr5:42751732-42751962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):42, 204

               
               
               Conread position:169-402
               
               
               Cow position:chr5:13046913-13047144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):31, 64

               
               
               Conread position:169-414
               
               
               Cow position:chr5:34201686-34201425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:169-668
               
               
               Cow position:chr5:50870874-50871381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 104

               
               
               Conread position:170-384
               
               
               Cow position:chr5:2459250-2459468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):50, 164

               
               
               Conread position:170-384
               
               
               Cow position:chr5:35301365-35301584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:170-384
               
               
               Cow position:chr5:46777660-46777879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:170-403
               
               
               Cow position:chr5:6587321-6587082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:170-411
               
               
               Cow position:chr5:41376587-41376337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):50, 229

               
               
               Conread position:170-414
               
               
               Cow position:chr5:10813483-10813233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:170-414
               
               
               Cow position:chr5:48807466-48807216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):17, 13

               
               
               Conread position:170-509
               
               
               Cow position:chr5:49223225-49222901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):38, 174

               
               
               Conread position:170-649
               
               
               Cow position:chr5:987801-987314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 248

               
               
               Conread position:170-665
               
               
               Cow position:chr5:26077925-26077420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:324
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):54, 227

               
               
               Conread position:170-665
               
               
               Cow position:chr5:32774032-32774540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 322

               
               
               Conread position:170-665
               
               
               Cow position:chr5:40131335-40130829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:325
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):50, 241

               
               
               Conread position:170-665
               
               
               Cow position:chr5:73487800-73487289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:329
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):17, 13

               
               
               Conread position:170-668
               
               
               Cow position:chr5:3965716-3966216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 9

               
               
               Conread position:170-668
               
               
               Cow position:chr5:4684537-4684033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 102

               
               
               Conread position:170-668
               
               
               Cow position:chr5:6153632-6153124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 165

               
               
               Conread position:170-668
               
               
               Cow position:chr5:10774996-10774491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 314

               
               
               Conread position:170-668
               
               
               Cow position:chr5:10842114-10841608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 287

               
               
               Conread position:170-668
               
               
               Cow position:chr5:12731447-12730946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 34

               
               
               Conread position:170-668
               
               
               Cow position:chr5:18560139-18559637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:332
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):59, 17

               
               
               Conread position:170-668
               
               
               Cow position:chr5:58197283-58197789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:335
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):50, 229

               
               
               Conread position:170-668
               
               
               Cow position:chr5:64780748-64780240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 165

               
               
               Conread position:170-668
               
               
               Cow position:chr5:76096321-76096823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 162

               
               
               Conread position:171-668
               
               
               Cow position:chr5:59061903-59062408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 341

               
               
               Conread position:172-432
               
               
               Cow position:chr5:57481271-57481005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):24, 7

               
               
               Conread position:172-668
               
               
               Cow position:chr5:23959061-23958556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 227

               
               
               Conread position:174-384
               
               
               Cow position:chr5:5104483-5104701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):61, 34

               
               
               Conread position:176-427
               
               
               Cow position:chr5:53006872-53007133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):24, 227

               
               
               Conread position:177-401
               
               
               Cow position:chr5:37655178-37655406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):55, 11

               
               
               Conread position:178-662
               
               
               Cow position:chr5:18885252-18884789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:310
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):32, 7

               
               
               Conread position:179-414
               
               
               Cow position:chr5:9037859-9037630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):54, 8

               
               
               Conread position:179-414
               
               
               Cow position:chr5:14784098-14783853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):37, 196

               
               
               Conread position:179-506
               
               
               Cow position:chr5:52435007-52435337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:227
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):37, 91

               
               
               Conread position:179-668
               
               
               Cow position:chr5:46004597-46004105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:312
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):30, 87

               
               
               Conread position:183-367
               
               
               Cow position:chr5:18665046-18665235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:183-384
               
               
               Cow position:chr5:46808583-46808789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:183-411
               
               
               Cow position:chr5:26184132-26184374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):26, 177

               
               
               Conread position:183-414
               
               
               Cow position:chr5:4386508-4386745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):26, 89

               
               
               Conread position:183-506
               
               
               Cow position:chr5:37733620-37733939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):26, 160

               
               
               Conread position:183-665
               
               
               Cow position:chr5:7275111-7275599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:321
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):52, 5

               
               
               Conread position:183-668
               
               
               Cow position:chr5:3502837-3502333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 292

               
               
               Conread position:183-668
               
               
               Cow position:chr5:4017927-4017438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:328
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):26, 67

               
               
               Conread position:183-668
               
               
               Cow position:chr5:10920111-10920608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:326
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):26, 5

               
               
               Conread position:183-668
               
               
               Cow position:chr5:18121211-18120709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 238

               
               
               Conread position:183-668
               
               
               Cow position:chr5:24099928-24100415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:321
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):23, 152

               
               
               Conread position:183-668
               
               
               Cow position:chr5:31707834-31708334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 245

               
               
               Conread position:183-668
               
               
               Cow position:chr5:48533233-48533717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:323
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):18, 220

               
               
               Conread position:183-670
               
               
               Cow position:chr5:50947903-50948423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:184-403
               
               
               Cow position:chr5:13536551-13536783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):28, 97

               
               
               Conread position:185-379
               
               
               Cow position:chr5:35527205-35527406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):5, 140

               
               
               Conread position:185-380
               
               
               Cow position:chr5:7810971-7810768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):50, 88

               
               
               Conread position:185-440
               
               
               Cow position:chr5:62823759-62824028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):26, 243

               
               
               Conread position:185-506
               
               
               Cow position:chr5:34298188-34298496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 93

               
               
               Conread position:185-606
               
               
               Cow position:chr5:40789334-40789758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:290
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):42, 8

               
               
               Conread position:185-668
               
               
               Cow position:chr5:18400421-18399933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 94

               
               
               Conread position:187-415
               
               
               Cow position:chr5:49757432-49757191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):14, 132

               
               
               Conread position:189-614
               
               
               Cow position:chr5:11115476-11115068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:285
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):197, 35

               
               
               Conread position:190-670
               
               
               Cow position:chr5:16102774-16102296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:310
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):283, 49

               
               
               Conread position:200-665
               
               
               Cow position:chr5:2915731-2916203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:307
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):29, 134

               
               
               Conread position:200-668
               
               
               Cow position:chr5:37378423-37378899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:311
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):21, 256

               
               
               Conread position:204-378
               
               
               Cow position:chr5:23686617-23686436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:204-415
               
               
               Cow position:chr5:15375993-15376203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):180, 28

               
               
               Conread position:204-560
               
               
               Cow position:chr5:43988408-43988759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):9, 30

               
               
               Conread position:205-401
               
               
               Cow position:chr5:18274052-18274256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:205-407
               
               
               Cow position:chr5:23230281-23230489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):30, 194

               
               
               Conread position:205-622
               
               
               Cow position:chr5:31100132-31099711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:277
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):24, 72

               
               
               Conread position:219-417
               
               
               Cow position:chr5:24104147-24103947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):17, 150

               
               
               Conread position:222-433
               
               
               Cow position:chr5:54860654-54860437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:231-411
               
               
               Cow position:chr5:14658118-14657942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:231-411
               
               
               Cow position:chr5:28333152-28332973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):161, 0

               
               
               Conread position:231-665
               
               
               Cow position:chr5:54620377-54620809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:282
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):93, 76

               
               
               Conread position:234-384
               
               
               Cow position:chr5:12681715-12681565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:234-507
               
               
               Cow position:chr5:47829741-47829488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):146, 0

               
               
               Conread position:234-665
               
               
               Cow position:chr5:29434418-29434003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:275
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):243, 50

               
               
               Conread position:234-668
               
               
               Cow position:chr5:24152103-24152548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:285
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):114, 172

               
               
               Conread position:235-506
               
               
               Cow position:chr5:45701646-45701903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):151, 0

               
               
               Conread position:236-384
               
               
               Cow position:chr5:20108239-20108387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:236-403
               
               
               Cow position:chr5:41527460-41527292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):60, 155

               
               
               Conread position:236-410
               
               
               Cow position:chr5:31122249-31122074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):150, 0

               
               
               Conread position:238-414
               
               
               Cow position:chr5:34697990-34698167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):96, 91

               
               
               Conread position:238-668
               
               
               Cow position:chr5:55629327-55629756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:280
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):152, 91

               
               
               Conread position:238-670
               
               
               Cow position:chr5:49487829-49488249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:276
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):349, 50

               
               
               Conread position:239-664
               
               
               Cow position:chr5:3787278-3787706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):106, 90

               
               
               Conread position:265-668
               
               
               Cow position:chr5:3424724-3425137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:261
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):19, 54

               
               
               Conread position:277-631
               
               
               Cow position:chr5:12642056-12641703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):115, 140

               
               
               Conread position:288-668
               
               
               Cow position:chr5:58191372-58190989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:247
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):102, 219

               
               
               Conread position:431-670
               
               
               Cow position:chr5:43988608-43988840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):16, 112

               
               
               Conread position:433-669
               
               
               Cow position:chr5:34904141-34904394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):74, 127

               
               
               Conread position:505-665
               
               
               Cow position:chr5:40348677-40348517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):86, 33

               
               
               Conread position:506-670
               
               
               Cow position:chr5:24103871-24103704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:508-661
               
               
               Cow position:chr5:28014616-28014770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):91, 36

               
               
               Conread position:508-665
               
               
               Cow position:chr5:5894642-5894803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr5:10813141-10812980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr5:42506355-42506516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr5:46778002-46778163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr5:46791453-46791614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr5:50505242-50505406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr5:1340318-1340154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr5:4386831-4386994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr5:5926360-5926195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr5:29767703-29767871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):7, 19

               
               
               Conread position:508-668
               
               
               Cow position:chr5:31327143-31327306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):79, 99

               
               
               Conread position:508-668
               
               
               Cow position:chr5:31642911-31642750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):84, 12

               
               
               Conread position:508-668
               
               
               Cow position:chr5:41065897-41065733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr5:46665606-46665770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr5:46736985-46736820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr5:49520320-49520480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):89, 64

               
               
               Conread position:508-668
               
               
               Cow position:chr5:55993839-55993676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:508-670
               
               
               Cow position:chr5:14344123-14343957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:508-670
               
               
               Cow position:chr5:34298519-34298685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-670
               
               
               Cow position:chr5:41960033-41959872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):84, 94

               
               
               Conread position:508-670
               
               
               Cow position:chr5:59084540-59084375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:508-672
               
               
               Cow position:chr5:49118729-49118563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:509-668
               
               
               Cow position:chr5:4756573-4756410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:509-668
               
               
               Cow position:chr5:5104824-5104987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:509-668
               
               
               Cow position:chr5:6586978-6586814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:510-668
               
               
               Cow position:chr5:4070824-4070986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:511-668
               
               
               Cow position:chr5:37733964-37734125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:511-668
               
               
               Cow position:chr5:59283914-59284075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:159-414
               
               
               Cow position:chr6:43792176-43791914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:159-668
               
               
               Cow position:chr6:13309986-13309477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 25

               
               
               Conread position:160-384
               
               
               Cow position:chr6:11871261-11871031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:160-665
               
               
               Cow position:chr6:40276477-40276991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:331
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):11, 24

               
               
               Conread position:160-665
               
               
               Cow position:chr6:40326812-40327325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 252

               
               
               Conread position:160-668
               
               
               Cow position:chr6:915029-915544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:335
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):11, 20

               
               
               Conread position:160-668
               
               
               Cow position:chr6:8203582-8204098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:528
               
               
               Alignm identity:330
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):11, 20

               
               
               Conread position:160-668
               
               
               Cow position:chr6:28104470-28103952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:326
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):7, 176

               
               
               Conread position:163-664
               
               
               Cow position:chr6:703611-704118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:319
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):13, 54

               
               
               Conread position:167-663
               
               
               Cow position:chr6:476930-477447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:338
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):18, 177

               
               
               Conread position:169-662
               
               
               Cow position:chr6:3888119-3887612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:329
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):13, 160

               
               
               Conread position:169-665
               
               
               Cow position:chr6:52694431-52694935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:330
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):60, 28

               
               
               Conread position:169-668
               
               
               Cow position:chr6:21974064-21974570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:528
               
               
               Alignm identity:341
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):16, 95

               
               
               Conread position:170-379
               
               
               Cow position:chr6:13945317-13945529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):50, 196

               
               
               Conread position:170-384
               
               
               Cow position:chr6:44002078-44002295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:170-384
               
               
               Cow position:chr6:44149143-44148925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):50, 94

               
               
               Conread position:170-384
               
               
               Cow position:chr6:65820565-65820347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):54, 155

               
               
               Conread position:170-386
               
               
               Cow position:chr6:16053514-16053735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):17, 165

               
               
               Conread position:170-400
               
               
               Cow position:chr6:47047776-47047540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):50, 229

               
               
               Conread position:170-428
               
               
               Cow position:chr6:25215622-25215886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):59, 164

               
               
               Conread position:170-430
               
               
               Cow position:chr6:40379226-40378960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:170-632
               
               
               Cow position:chr6:1409978-1409507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:300
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):51, 202

               
               
               Conread position:170-649
               
               
               Cow position:chr6:50199-49718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:312
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):17, 13

               
               
               Conread position:170-658
               
               
               Cow position:chr6:28490162-28489669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 87

               
               
               Conread position:170-665
               
               
               Cow position:chr6:184138-183633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:320
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):17, 13

               
               
               Conread position:170-665
               
               
               Cow position:chr6:5749329-5749832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 241

               
               
               Conread position:170-665
               
               
               Cow position:chr6:27170985-27171486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 161

               
               
               Conread position:170-668
               
               
               Cow position:chr6:330059-329555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 164

               
               
               Conread position:170-668
               
               
               Cow position:chr6:2877279-2876774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 321

               
               
               Conread position:170-668
               
               
               Cow position:chr6:3150639-3151138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:324
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):45, 287

               
               
               Conread position:170-668
               
               
               Cow position:chr6:5948377-5947871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:332
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):17, 13

               
               
               Conread position:170-668
               
               
               Cow position:chr6:7139936-7139430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 229

               
               
               Conread position:170-668
               
               
               Cow position:chr6:8759891-8759382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 13

               
               
               Conread position:170-668
               
               
               Cow position:chr6:13848476-13848980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:328
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):52, 34

               
               
               Conread position:170-668
               
               
               Cow position:chr6:26669457-26668952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 130

               
               
               Conread position:170-668
               
               
               Cow position:chr6:27375517-27375017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:336
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):65, 9

               
               
               Conread position:170-668
               
               
               Cow position:chr6:28703305-28702800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:327
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):50, 341

               
               
               Conread position:170-668
               
               
               Cow position:chr6:34890718-34890220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 131

               
               
               Conread position:170-668
               
               
               Cow position:chr6:44262070-44261573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:330
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):66, 50

               
               
               Conread position:170-668
               
               
               Cow position:chr6:45587356-45587844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:324
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):50, 111

               
               
               Conread position:171-668
               
               
               Cow position:chr6:51731487-51731986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:327
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):38, 26

               
               
               Conread position:172-400
               
               
               Cow position:chr6:10250207-10249967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:172-612
               
               
               Cow position:chr6:15478578-15479025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:292
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):59, 13

               
               
               Conread position:173-384
               
               
               Cow position:chr6:40317004-40317216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):56, 110

               
               
               Conread position:173-668
               
               
               Cow position:chr6:28170317-28170817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 335

               
               
               Conread position:173-668
               
               
               Cow position:chr6:59594325-59594809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:319
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):57, 67

               
               
               Conread position:173-668
               
               
               Cow position:chr6:64717727-64718228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:322
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):57, 161

               
               
               Conread position:175-493
               
               
               Cow position:chr6:48579623-48579302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):18, 113

               
               
               Conread position:177-433
               
               
               Cow position:chr6:39333469-39333198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):32, 11

               
               
               Conread position:179-665
               
               
               Cow position:chr6:17243892-17243391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:335
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):33, 9

               
               
               Conread position:183-402
               
               
               Cow position:chr6:47625471-47625704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:183-664
               
               
               Cow position:chr6:30273485-30272987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:318
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):26, 160

               
               
               Conread position:183-665
               
               
               Cow position:chr6:28187411-28186931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:309
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):26, 85

               
               
               Conread position:183-665
               
               
               Cow position:chr6:59617505-59617988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:330
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):26, 163

               
               
               Conread position:183-668
               
               
               Cow position:chr6:12664911-12664411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:333
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):26, 5

               
               
               Conread position:183-668
               
               
               Cow position:chr6:39910747-39911239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 25

               
               
               Conread position:183-668
               
               
               Cow position:chr6:41228854-41229354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 144

               
               
               Conread position:183-668
               
               
               Cow position:chr6:43619132-43619641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:330
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):26, 317

               
               
               Conread position:183-670
               
               
               Cow position:chr6:10632957-10633436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 61

               
               
               Conread position:183-670
               
               
               Cow position:chr6:24240816-24241313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:335
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):26, 157

               
               
               Conread position:183-671
               
               
               Cow position:chr6:65843024-65843520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:317
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):26, 254

               
               
               Conread position:184-432
               
               
               Cow position:chr6:58460908-58460650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):25, 240

               
               
               Conread position:184-504
               
               
               Cow position:chr6:15966399-15966084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:224
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):34, 28

               
               
               Conread position:185-359
               
               
               Cow position:chr6:6158126-6158311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):7, 149

               
               
               Conread position:185-382
               
               
               Cow position:chr6:35418891-35418684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:185-417
               
               
               Cow position:chr6:58066139-58066370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):46, 121

               
               
               Conread position:185-668
               
               
               Cow position:chr6:10679830-10680315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:332
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):7, 80

               
               
               Conread position:185-672
               
               
               Cow position:chr6:69143981-69144483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 183

               
               
               Conread position:188-665
               
               
               Cow position:chr6:21835776-21835293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:312
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):24, 268

               
               
               Conread position:188-665
               
               
               Cow position:chr6:36528624-36529102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:313
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):37, 24

               
               
               Conread position:188-665
               
               
               Cow position:chr6:66546895-66547375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:312
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):47, 14

               
               
               Conread position:188-668
               
               
               Cow position:chr6:16591379-16591865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:324
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):47, 114

               
               
               Conread position:189-668
               
               
               Cow position:chr6:35875296-35874806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:317
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):20, 154

               
               
               Conread position:191-384
               
               
               Cow position:chr6:2376105-2376298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):29, 99

               
               
               Conread position:203-403
               
               
               Cow position:chr6:58601923-58602123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):60, 17

               
               
               Conread position:204-364
               
               
               Cow position:chr6:42441819-42441975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:204-384
               
               
               Cow position:chr6:65907342-65907165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:204-417
               
               
               Cow position:chr6:28475160-28475374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):30, 185

               
               
               Conread position:204-665
               
               
               Cow position:chr6:3572039-3572501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:304
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):180, 21

               
               
               Conread position:205-670
               
               
               Cow position:chr6:66233240-66233712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 47

               
               
               Conread position:207-418
               
               
               Cow position:chr6:48420140-48419936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):27, 17

               
               
               Conread position:208-670
               
               
               Cow position:chr6:238398-237940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:302
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):25, 11

               
               
               Conread position:234-668
               
               
               Cow position:chr6:18972987-18972576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:284
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):150, 39

               
               
               Conread position:236-384
               
               
               Cow position:chr6:17596820-17596672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:236-428
               
               
               Cow position:chr6:59502843-59503033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):150, 35

               
               
               Conread position:238-659
               
               
               Cow position:chr6:57471145-57471564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:286
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):238, 148

               
               
               Conread position:239-665
               
               
               Cow position:chr6:18985569-18985985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:288
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):144, 90

               
               
               Conread position:240-665
               
               
               Cow position:chr6:14390408-14390836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 174

               
               
               Conread position:251-403
               
               
               Cow position:chr6:15926063-15925918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):135, 13

               
               
               Conread position:276-509
               
               
               Cow position:chr6:7193656-7193440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:404-668
               
               
               Cow position:chr6:1381719-1381435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):99, 172

               
               
               Conread position:426-668
               
               
               Cow position:chr6:65876973-65876739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:508-663
               
               
               Cow position:chr6:25216049-25216204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:508-663
               
               
               Cow position:chr6:62578452-62578293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr6:18513300-18513461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr6:20352351-20352190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr6:28642792-28642631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr6:43431612-43431451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr6:46296034-46296195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr6:53543843-53544008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr6:2556387-2556551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr6:13978497-13978661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr6:16051510-16051346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr6:17596549-17596385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr6:43791836-43791671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):55, 46

               
               
               Conread position:508-668
               
               
               Cow position:chr6:50718418-50718582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr6:68028893-68029058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-669
               
               
               Cow position:chr6:39375035-39375202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:508-670
               
               
               Cow position:chr6:60513793-60513959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:508-672
               
               
               Cow position:chr6:15925820-15925655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):79, 150

               
               
               Conread position:509-657
               
               
               Cow position:chr6:19016947-19017099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:509-665
               
               
               Cow position:chr6:62663464-62663620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):61, 77

               
               
               Conread position:509-668
               
               
               Cow position:chr6:47041444-47041281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:510-663
               
               
               Cow position:chr6:11269698-11269547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):87, 51

               
               
               Conread position:510-665
               
               
               Cow position:chr6:40128200-40128358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:511-665
               
               
               Cow position:chr6:59503108-59503269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:511-668
               
               
               Cow position:chr6:14081299-14081461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:515-668
               
               
               Cow position:chr6:25791941-25791788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):82, 18

               
               
               Conread position:515-670
               
               
               Cow position:chr6:7835222-7835380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):72, 86

               
               
               Conread position:532-668
               
               
               Cow position:chr6:7192789-7192657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:135-411
               
               
               Cow position:chr7:68896105-68896392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):26, 10

               
               
               Conread position:152-668
               
               
               Cow position:chr7:20773868-20773344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 15

               
               
               Conread position:159-668
               
               
               Cow position:chr7:48804954-48804435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 254

               
               
               Conread position:160-668
               
               
               Cow position:chr7:5261432-5260927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:334
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):7, 28

               
               
               Conread position:160-668
               
               
               Cow position:chr7:7260005-7260518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 143

               
               
               Conread position:160-668
               
               
               Cow position:chr7:65812308-65812833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:345
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):60, 8

               
               
               Conread position:169-668
               
               
               Cow position:chr7:24806998-24806487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:334
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):40, 24

               
               
               Conread position:169-668
               
               
               Cow position:chr7:61578985-61579501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:337
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):16, 175

               
               
               Conread position:169-668
               
               
               Cow position:chr7:67813980-67814486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:338
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):16, 93

               
               
               Conread position:170-380
               
               
               Cow position:chr7:3126184-3126399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):17, 13

               
               
               Conread position:170-384
               
               
               Cow position:chr7:6721636-6721854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):50, 17

               
               
               Conread position:170-384
               
               
               Cow position:chr7:20060982-20061200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):50, 138

               
               
               Conread position:170-384
               
               
               Cow position:chr7:23250115-23250334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:170-396
               
               
               Cow position:chr7:6647178-6646945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):65, 7

               
               
               Conread position:170-414
               
               
               Cow position:chr7:444764-444514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):17, 13

               
               
               Conread position:170-582
               
               
               Cow position:chr7:20514291-20513877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:263
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):50, 101

               
               
               Conread position:170-605
               
               
               Cow position:chr7:6627909-6627468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:288
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):54, 250

               
               
               Conread position:170-605
               
               
               Cow position:chr7:6629804-6629364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:286
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):54, 244

               
               
               Conread position:170-659
               
               
               Cow position:chr7:39132970-39133480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:528
               
               
               Alignm identity:350
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):25, 8

               
               
               Conread position:170-664
               
               
               Cow position:chr7:13532418-13531911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 9

               
               
               Conread position:170-665
               
               
               Cow position:chr7:546334-546838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:326
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):50, 99

               
               
               Conread position:170-665
               
               
               Cow position:chr7:52763781-52764283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 13

               
               
               Conread position:170-665
               
               
               Cow position:chr7:62445657-62445154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 249

               
               
               Conread position:170-668
               
               
               Cow position:chr7:14411-13911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:327
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):83, 153

               
               
               Conread position:170-668
               
               
               Cow position:chr7:10429932-10429424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:330
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):26, 166

               
               
               Conread position:170-668
               
               
               Cow position:chr7:20533462-20533967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:324
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):11, 52

               
               
               Conread position:170-668
               
               
               Cow position:chr7:20557238-20557778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:541
               
               
               Alignm identity:357
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:170-668
               
               
               Cow position:chr7:27100794-27100290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 229

               
               
               Conread position:170-668
               
               
               Cow position:chr7:27788450-27788954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:323
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):26, 14

               
               
               Conread position:170-668
               
               
               Cow position:chr7:38398314-38398818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:322
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):59, 152

               
               
               Conread position:170-668
               
               
               Cow position:chr7:45947658-45947151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 13

               
               
               Conread position:170-668
               
               
               Cow position:chr7:55040991-55040485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 229

               
               
               Conread position:170-669
               
               
               Cow position:chr7:49828837-49828331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:329
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):59, 171

               
               
               Conread position:170-670
               
               
               Cow position:chr7:58337544-58337046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 126

               
               
               Conread position:173-384
               
               
               Cow position:chr7:54649398-54649614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:173-668
               
               
               Cow position:chr7:46747484-46747986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:327
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):5, 165

               
               
               Conread position:174-665
               
               
               Cow position:chr7:45952147-45952629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:350
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):322, 29

               
               
               Conread position:174-668
               
               
               Cow position:chr7:49730969-49731475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:323
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):32, 9

               
               
               Conread position:176-668
               
               
               Cow position:chr7:37021542-37022052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:326
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):59, 16

               
               
               Conread position:179-414
               
               
               Cow position:chr7:54581355-54581602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):30, 198

               
               
               Conread position:179-659
               
               
               Cow position:chr7:34221342-34220856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:313
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):23, 179

               
               
               Conread position:180-512
               
               
               Cow position:chr7:41874778-41874450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 8

               
               
               Conread position:181-384
               
               
               Cow position:chr7:34416849-34416634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):14, 7

               
               
               Conread position:183-326
               
               
               Cow position:chr7:42305331-42305183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:183-384
               
               
               Cow position:chr7:57563605-57563391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:183-403
               
               
               Cow position:chr7:30117985-30117754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):29, 15

               
               
               Conread position:183-414
               
               
               Cow position:chr7:33070911-33070667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):26, 148

               
               
               Conread position:183-432
               
               
               Cow position:chr7:25441003-25441260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:183-494
               
               
               Cow position:chr7:33404890-33404583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:214
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):13, 141

               
               
               Conread position:183-509
               
               
               Cow position:chr7:25136349-25136685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):12, 174

               
               
               Conread position:183-583
               
               
               Cow position:chr7:66070627-66070221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:260
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):26, 233

               
               
               Conread position:183-662
               
               
               Cow position:chr7:55536428-55535925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:331
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):26, 160

               
               
               Conread position:183-665
               
               
               Cow position:chr7:1012006-1011509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:323
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):19, 178

               
               
               Conread position:183-668
               
               
               Cow position:chr7:444760-444260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:340
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):26, 85

               
               
               Conread position:183-668
               
               
               Cow position:chr7:11462640-11462134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:329
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):26, 237

               
               
               Conread position:183-668
               
               
               Cow position:chr7:14138095-14137590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:331
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):26, 162

               
               
               Conread position:183-668
               
               
               Cow position:chr7:20797952-20797447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:338
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):29, 155

               
               
               Conread position:183-668
               
               
               Cow position:chr7:21233505-21233009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:330
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):26, 159

               
               
               Conread position:183-668
               
               
               Cow position:chr7:21313406-21313906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 285

               
               
               Conread position:183-668
               
               
               Cow position:chr7:33311444-33310946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:326
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):26, 243

               
               
               Conread position:183-668
               
               
               Cow position:chr7:34487412-34487914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:329
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):26, 160

               
               
               Conread position:183-668
               
               
               Cow position:chr7:39793367-39793857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 12

               
               
               Conread position:183-669
               
               
               Cow position:chr7:19045951-19045449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 9

               
               
               Conread position:183-670
               
               
               Cow position:chr7:47974801-47974297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 212

               
               
               Conread position:184-651
               
               
               Cow position:chr7:1402987-1402525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:317
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):28, 97

               
               
               Conread position:184-668
               
               
               Cow position:chr7:21986903-21987405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:319
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):25, 244

               
               
               Conread position:185-632
               
               
               Cow position:chr7:59680355-59680810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:301
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):12, 23

               
               
               Conread position:188-665
               
               
               Cow position:chr7:29471973-29472456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 207

               
               
               Conread position:200-384
               
               
               Cow position:chr7:33785789-33785978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:204-372
               
               
               Cow position:chr7:30304408-30304573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):29, 107

               
               
               Conread position:204-376
               
               
               Cow position:chr7:58376384-58376204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:204-403
               
               
               Cow position:chr7:43396878-43396679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):186, 89

               
               
               Conread position:204-494
               
               
               Cow position:chr7:58995095-58995363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:204-610
               
               
               Cow position:chr7:31095733-31095321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:279
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):31, 79

               
               
               Conread position:204-617
               
               
               Cow position:chr7:18445221-18444795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:277
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):122, 28

               
               
               Conread position:205-668
               
               
               Cow position:chr7:63387256-63387728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 260

               
               
               Conread position:206-378
               
               
               Cow position:chr7:68334435-68334605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):54, 28

               
               
               Conread position:231-614
               
               
               Cow position:chr7:33333124-33333508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:248
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):155, 220

               
               
               Conread position:231-669
               
               
               Cow position:chr7:25433941-25434380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:303
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):273, 98

               
               
               Conread position:232-384
               
               
               Cow position:chr7:28664205-28664054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:232-668
               
               
               Cow position:chr7:67676633-67677068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:281
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):14, 235

               
               
               Conread position:232-670
               
               
               Cow position:chr7:7046-7488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 132

               
               
               Conread position:236-384
               
               
               Cow position:chr7:8336929-8337077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:236-430
               
               
               Cow position:chr7:20211525-20211331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:236-668
               
               
               Cow position:chr7:24933993-24933556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:289
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):188, 150

               
               
               Conread position:238-509
               
               
               Cow position:chr7:63949511-63949252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):36, 99

               
               
               Conread position:238-668
               
               
               Cow position:chr7:60728886-60728455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:283
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):152, 91

               
               
               Conread position:240-670
               
               
               Cow position:chr7:22758941-22759385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:291
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):215, 36

               
               
               Conread position:273-514
               
               
               Cow position:chr7:28621117-28621353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:277-668
               
               
               Cow position:chr7:3518887-3519277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:265
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):109, 89

               
               
               Conread position:277-668
               
               
               Cow position:chr7:33067120-33066725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):12, 46

               
               
               Conread position:278-435
               
               
               Cow position:chr7:27474633-27474790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):108, 139

               
               
               Conread position:414-665
               
               
               Cow position:chr7:20061208-20061481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:433-668
               
               
               Cow position:chr7:11421832-11421582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):78, 128

               
               
               Conread position:433-672
               
               
               Cow position:chr7:27711172-27711431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):65, 255

               
               
               Conread position:435-665
               
               
               Cow position:chr7:30304605-30304835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:173
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):59, 20

               
               
               Conread position:479-670
               
               
               Cow position:chr7:51192504-51192707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:508-657
               
               
               Cow position:chr7:41874433-41874279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr7:37010132-37009971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr7:112445-112609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr7:526783-526948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):43, 108

               
               
               Conread position:508-668
               
               
               Cow position:chr7:904312-904148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr7:6646554-6646390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr7:8337199-8337364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr7:14213550-14213387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):78, 137

               
               
               Conread position:508-668
               
               
               Cow position:chr7:20433660-20433824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr7:22345684-22345520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):79, 124

               
               
               Conread position:508-668
               
               
               Cow position:chr7:25441620-25441777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr7:26928342-26928178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):28, 24

               
               
               Conread position:508-668
               
               
               Cow position:chr7:27458893-27458740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr7:28663969-28663806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr7:34150776-34150941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr7:34817481-34817645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr7:37164699-37164863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr7:42303621-42303456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr7:58350203-58350039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr7:64010722-64010885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):76, 93

               
               
               Conread position:508-668
               
               
               Cow position:chr7:64247753-64247593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr7:67800661-67800824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:508-669
               
               
               Cow position:chr7:19468588-19468423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-670
               
               
               Cow position:chr7:45720811-45720977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):79, 47

               
               
               Conread position:508-670
               
               
               Cow position:chr7:45930533-45930370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:137
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:508-670
               
               
               Cow position:chr7:68896488-68896650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):81, 116

               
               
               Conread position:509-653
               
               
               Cow position:chr7:44216631-44216776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):22, 36

               
               
               Conread position:509-668
               
               
               Cow position:chr7:7276229-7276392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:515-668
               
               
               Cow position:chr7:3127183-3127339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):23, 12

               
               
               Conread position:152-668
               
               
               Cow position:chr8:12313743-12313214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:339
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):19, 8

               
               
               Conread position:156-378
               
               
               Cow position:chr8:35543370-35543591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):64, 29

               
               
               Conread position:158-668
               
               
               Cow position:chr8:45794084-45793569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:340
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):13, 26

               
               
               Conread position:160-431
               
               
               Cow position:chr8:42485581-42485858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):7, 175

               
               
               Conread position:160-668
               
               
               Cow position:chr8:10741975-10741459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 24

               
               
               Conread position:160-668
               
               
               Cow position:chr8:33325722-33326238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 24

               
               
               Conread position:165-405
               
               
               Cow position:chr8:56884206-56884449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):56, 90

               
               
               Conread position:165-414
               
               
               Cow position:chr8:47783139-47782889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):56, 5

               
               
               Conread position:169-384
               
               
               Cow position:chr8:9539036-9538809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:169-414
               
               
               Cow position:chr8:45145633-45145373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:169-429
               
               
               Cow position:chr8:2235305-2235037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):13, 20

               
               
               Conread position:170-378
               
               
               Cow position:chr8:14630982-14630769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:170-384
               
               
               Cow position:chr8:1152582-1152368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):18, 9

               
               
               Conread position:170-384
               
               
               Cow position:chr8:14255864-14256083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:170-384
               
               
               Cow position:chr8:50959928-50959713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):58, 108

               
               
               Conread position:170-396
               
               
               Cow position:chr8:3748519-3748287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):24, 164

               
               
               Conread position:170-403
               
               
               Cow position:chr8:2386869-2387109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):17, 229

               
               
               Conread position:170-414
               
               
               Cow position:chr8:6764604-6764362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):59, 13

               
               
               Conread position:170-414
               
               
               Cow position:chr8:32041082-32040831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:170-414
               
               
               Cow position:chr8:37932777-37933027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:170-414
               
               
               Cow position:chr8:51068316-51068066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:170-607
               
               
               Cow position:chr8:37655874-37655429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:294
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):50, 286

               
               
               Conread position:170-655
               
               
               Cow position:chr8:11824577-11825063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:311
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):59, 215

               
               
               Conread position:170-664
               
               
               Cow position:chr8:34349352-34349854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 248

               
               
               Conread position:170-665
               
               
               Cow position:chr8:1347569-1347066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 177

               
               
               Conread position:170-665
               
               
               Cow position:chr8:21250907-21251417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:328
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):50, 229

               
               
               Conread position:170-665
               
               
               Cow position:chr8:22570623-22570120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:317
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):50, 241

               
               
               Conread position:170-665
               
               
               Cow position:chr8:39820133-39820636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 249

               
               
               Conread position:170-668
               
               
               Cow position:chr8:4688083-4688588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 17

               
               
               Conread position:170-668
               
               
               Cow position:chr8:8516916-8516407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:328
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):47, 17

               
               
               Conread position:170-668
               
               
               Cow position:chr8:10750032-10750534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 187

               
               
               Conread position:170-668
               
               
               Cow position:chr8:11834202-11834714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:335
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):39, 22

               
               
               Conread position:170-668
               
               
               Cow position:chr8:14256761-14257267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 241

               
               
               Conread position:170-668
               
               
               Cow position:chr8:14927203-14926698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:325
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):17, 9

               
               
               Conread position:170-668
               
               
               Cow position:chr8:21157109-21156600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 285

               
               
               Conread position:170-668
               
               
               Cow position:chr8:25412303-25412805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:530
               
               
               Alignm identity:346
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):14, 109

               
               
               Conread position:170-668
               
               
               Cow position:chr8:25524080-25524579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:320
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):17, 13

               
               
               Conread position:170-668
               
               
               Cow position:chr8:32630351-32629846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 287

               
               
               Conread position:170-668
               
               
               Cow position:chr8:35470983-35471489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:320
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):67, 249

               
               
               Conread position:170-668
               
               
               Cow position:chr8:38392308-38392811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:331
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):17, 13

               
               
               Conread position:170-668
               
               
               Cow position:chr8:50929433-50928918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:332
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):42, 173

               
               
               Conread position:170-668
               
               
               Cow position:chr8:50995468-50995973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:317
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):17, 13

               
               
               Conread position:170-672
               
               
               Cow position:chr8:14590197-14589686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:330
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):26, 13

               
               
               Conread position:171-402
               
               
               Cow position:chr8:44700664-44700901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):60, 29

               
               
               Conread position:171-402
               
               
               Cow position:chr8:46218072-46217835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:171-414
               
               
               Cow position:chr8:2887435-2887683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):49, 80

               
               
               Conread position:171-416
               
               
               Cow position:chr8:45691335-45691090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):55, 12

               
               
               Conread position:172-668
               
               
               Cow position:chr8:8400414-8399916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:323
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):8, 45

               
               
               Conread position:173-408
               
               
               Cow position:chr8:21230766-21231005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):56, 220

               
               
               Conread position:173-664
               
               
               Cow position:chr8:25774961-25774464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:312
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):21, 32

               
               
               Conread position:173-668
               
               
               Cow position:chr8:49218423-49218929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:316
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):21, 32

               
               
               Conread position:176-390
               
               
               Cow position:chr8:21584871-21585094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):57, 220

               
               
               Conread position:176-668
               
               
               Cow position:chr8:19190374-19190874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 82

               
               
               Conread position:177-668
               
               
               Cow position:chr8:25377660-25378175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:334
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):32, 15

               
               
               Conread position:178-631
               
               
               Cow position:chr8:38576497-38576044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:300
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):208, 69

               
               
               Conread position:178-668
               
               
               Cow position:chr8:32436399-32435889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:331
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):31, 287

               
               
               Conread position:179-502
               
               
               Cow position:chr8:46949459-46949787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):17, 6

               
               
               Conread position:179-667
               
               
               Cow position:chr8:32317858-32317372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:313
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):50, 155

               
               
               Conread position:183-359
               
               
               Cow position:chr8:9963821-9963644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):71, 33

               
               
               Conread position:183-411
               
               
               Cow position:chr8:6726299-6726058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:183-431
               
               
               Cow position:chr8:33590068-33590331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):26, 160

               
               
               Conread position:183-432
               
               
               Cow position:chr8:47490169-47490427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):26, 196

               
               
               Conread position:183-433
               
               
               Cow position:chr8:39194528-39194264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):26, 160

               
               
               Conread position:183-665
               
               
               Cow position:chr8:16090532-16091018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 109

               
               
               Conread position:183-665
               
               
               Cow position:chr8:36634824-36634320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:329
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):29, 160

               
               
               Conread position:183-668
               
               
               Cow position:chr8:11803503-11803998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:323
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):26, 11

               
               
               Conread position:183-668
               
               
               Cow position:chr8:30155787-30156287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:332
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):25, 98

               
               
               Conread position:183-668
               
               
               Cow position:chr8:55086216-55086730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 13

               
               
               Conread position:183-668
               
               
               Cow position:chr8:59261254-59260763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:320
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):51, 25

               
               
               Conread position:184-403
               
               
               Cow position:chr8:38605478-38605256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:184-665
               
               
               Cow position:chr8:47068130-47067636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 236

               
               
               Conread position:184-668
               
               
               Cow position:chr8:47660635-47660134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:333
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):25, 147

               
               
               Conread position:184-670
               
               
               Cow position:chr8:18054412-18054913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 213

               
               
               Conread position:185-378
               
               
               Cow position:chr8:41740434-41740628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):53, 104

               
               
               Conread position:185-411
               
               
               Cow position:chr8:24871095-24870866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):31, 180

               
               
               Conread position:185-414
               
               
               Cow position:chr8:24887358-24887585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):67, 8

               
               
               Conread position:186-668
               
               
               Cow position:chr8:12450731-12451229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:322
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):6, 156

               
               
               Conread position:188-384
               
               
               Cow position:chr8:8309915-8310111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):27, 144

               
               
               Conread position:188-402
               
               
               Cow position:chr8:7399415-7399198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):42, 177

               
               
               Conread position:188-670
               
               
               Cow position:chr8:47674535-47675026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 210

               
               
               Conread position:200-367
               
               
               Cow position:chr8:24228011-24228177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):26, 13

               
               
               Conread position:200-665
               
               
               Cow position:chr8:47887553-47888028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:315
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):31, 258

               
               
               Conread position:204-668
               
               
               Cow position:chr8:41643964-41643497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:315
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):180, 26

               
               
               Conread position:204-670
               
               
               Cow position:chr8:34109590-34110061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:314
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):32, 170

               
               
               Conread position:204-672
               
               
               Cow position:chr8:42440233-42439764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 106

               
               
               Conread position:205-668
               
               
               Cow position:chr8:1320728-1321204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:309
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):30, 258

               
               
               Conread position:213-665
               
               
               Cow position:chr8:18210728-18210277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 42

               
               
               Conread position:231-403
               
               
               Cow position:chr8:35213752-35213925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):155, 0

               
               
               Conread position:232-402
               
               
               Cow position:chr8:11565496-11565667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):154, 161

               
               
               Conread position:232-670
               
               
               Cow position:chr8:42656243-42655809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:286
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):234, 51

               
               
               Conread position:234-670
               
               
               Cow position:chr8:12542177-12541737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:292
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):80, 37

               
               
               Conread position:235-414
               
               
               Cow position:chr8:23134850-23134670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):151, 0

               
               
               Conread position:243-394
               
               
               Cow position:chr8:9061909-9062059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):147, 19

               
               
               Conread position:245-668
               
               
               Cow position:chr8:24190727-24191150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:270
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):145, 168

               
               
               Conread position:273-668
               
               
               Cow position:chr8:32648509-32648895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:251
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):314, 14

               
               
               Conread position:276-668
               
               
               Cow position:chr8:41949028-41949414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:277
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):239, 27

               
               
               Conread position:277-670
               
               
               Cow position:chr8:40891504-40891110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:263
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):113, 176

               
               
               Conread position:278-672
               
               
               Cow position:chr8:44241897-44241501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:251
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):62, 51

               
               
               Conread position:281-668
               
               
               Cow position:chr8:51038777-51038381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:281
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):106, 36

               
               
               Conread position:310-504
               
               
               Cow position:chr8:15409740-15409925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):26, 73

               
               
               Conread position:405-668
               
               
               Cow position:chr8:75705-75436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):17, 190

               
               
               Conread position:429-668
               
               
               Cow position:chr8:1152345-1152089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):82, 154

               
               
               Conread position:433-665
               
               
               Cow position:chr8:38194359-38194611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):65, 34

               
               
               Conread position:433-668
               
               
               Cow position:chr8:44106-43860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):43, 86

               
               
               Conread position:434-668
               
               
               Cow position:chr8:12804704-12804950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):77, 132

               
               
               Conread position:435-652
               
               
               Cow position:chr8:50432215-50431983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:472-669
               
               
               Cow position:chr8:47360974-47360782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:505-668
               
               
               Cow position:chr8:53836962-53837128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):82, 96

               
               
               Conread position:506-668
               
               
               Cow position:chr8:8912745-8912915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:508-664
               
               
               Cow position:chr8:60920827-60920987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr8:21205562-21205722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr8:29584247-29584408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr8:51067974-51067813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr8:2168498-2168333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):16, 125

               
               
               Conread position:508-668
               
               
               Cow position:chr8:4306209-4306372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):46, 50

               
               
               Conread position:508-668
               
               
               Cow position:chr8:6464893-6465057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr8:17313056-17313220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr8:23772656-23772819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):79, 51

               
               
               Conread position:508-668
               
               
               Cow position:chr8:24228303-24228463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr8:36786784-36786616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr8:39193901-39193737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr8:42485931-42486093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):79, 123

               
               
               Conread position:508-668
               
               
               Cow position:chr8:55272510-55272346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr8:60062432-60062596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-670
               
               
               Cow position:chr8:24870458-24870296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):79, 59

               
               
               Conread position:508-670
               
               
               Cow position:chr8:37093503-37093338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:509-662
               
               
               Cow position:chr8:5019034-5019191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:509-668
               
               
               Cow position:chr8:30486389-30486232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:510-668
               
               
               Cow position:chr8:3748176-3748016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:510-668
               
               
               Cow position:chr8:19332596-19332758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:511-657
               
               
               Cow position:chr8:45144337-45144186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:515-665
               
               
               Cow position:chr8:50959474-50959324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):88, 113

               
               
               Conread position:534-668
               
               
               Cow position:chr8:49414124-49414262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:547-665
               
               
               Cow position:chr8:42319210-42319088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:149-405
               
               
               Cow position:chr9:2866665-2866408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):14, 131

               
               
               Conread position:149-432
               
               
               Cow position:chr9:4533807-4534095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):22, 11

               
               
               Conread position:157-377
               
               
               Cow position:chr9:59428326-59428546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):14, 27

               
               
               Conread position:160-665
               
               
               Cow position:chr9:221209-220711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:332
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):7, 182

               
               
               Conread position:160-668
               
               
               Cow position:chr9:3309939-3310453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:330
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):7, 28

               
               
               Conread position:160-668
               
               
               Cow position:chr9:28023123-28023642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:338
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):7, 24

               
               
               Conread position:166-669
               
               
               Cow position:chr9:3224318-3223811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:332
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):27, 212

               
               
               Conread position:169-378
               
               
               Cow position:chr9:9562716-9562502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):40, 16

               
               
               Conread position:169-621
               
               
               Cow position:chr9:4283303-4283749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:293
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):217, 76

               
               
               Conread position:169-665
               
               
               Cow position:chr9:17063061-17062552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 313

               
               
               Conread position:169-668
               
               
               Cow position:chr9:4942476-4941963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:321
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):18, 324

               
               
               Conread position:169-668
               
               
               Cow position:chr9:31066051-31066556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 230

               
               
               Conread position:170-367
               
               
               Cow position:chr9:5142035-5142235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):14, 44

               
               
               Conread position:170-384
               
               
               Cow position:chr9:779485-779269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):45, 98

               
               
               Conread position:170-384
               
               
               Cow position:chr9:10976449-10976668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:170-384
               
               
               Cow position:chr9:27935714-27935933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:170-403
               
               
               Cow position:chr9:25034227-25033988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):50, 229

               
               
               Conread position:170-403
               
               
               Cow position:chr9:37969875-37969636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):59, 164

               
               
               Conread position:170-411
               
               
               Cow position:chr9:44384597-44384847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:170-414
               
               
               Cow position:chr9:32970278-32970526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):59, 17

               
               
               Conread position:170-414
               
               
               Cow position:chr9:50093903-50093653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:170-416
               
               
               Cow position:chr9:827771-827525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):47, 69

               
               
               Conread position:170-432
               
               
               Cow position:chr9:30673714-30673980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):45, 163

               
               
               Conread position:170-610
               
               
               Cow position:chr9:25903859-25904301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:287
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):54, 126

               
               
               Conread position:170-622
               
               
               Cow position:chr9:51212017-51212475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:295
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):50, 177

               
               
               Conread position:170-665
               
               
               Cow position:chr9:5005319-5005816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:321
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):26, 13

               
               
               Conread position:170-665
               
               
               Cow position:chr9:50792047-50792552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 244

               
               
               Conread position:170-665
               
               
               Cow position:chr9:64015336-64014836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:325
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):50, 98

               
               
               Conread position:170-668
               
               
               Cow position:chr9:2212474-2212980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:323
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):50, 153

               
               
               Conread position:170-668
               
               
               Cow position:chr9:2871663-2872170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:327
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):65, 38

               
               
               Conread position:170-668
               
               
               Cow position:chr9:7004065-7004573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:331
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):17, 13

               
               
               Conread position:170-668
               
               
               Cow position:chr9:9014409-9014909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:328
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):39, 13

               
               
               Conread position:170-668
               
               
               Cow position:chr9:30828075-30828580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 300

               
               
               Conread position:170-668
               
               
               Cow position:chr9:45874851-45875353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 249

               
               
               Conread position:171-506
               
               
               Cow position:chr9:12913110-12913435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:230
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):23, 129

               
               
               Conread position:172-668
               
               
               Cow position:chr9:37161474-37160978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:324
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):61, 11

               
               
               Conread position:177-663
               
               
               Cow position:chr9:38677481-38677975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 30

               
               
               Conread position:179-672
               
               
               Cow position:chr9:21410641-21411149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:330
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):30, 150

               
               
               Conread position:183-401
               
               
               Cow position:chr9:3727930-3728155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:183-582
               
               
               Cow position:chr9:29332590-29333006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 10

               
               
               Conread position:183-645
               
               
               Cow position:chr9:4308023-4307556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:347
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):29, 111

               
               
               Conread position:183-663
               
               
               Cow position:chr9:8781571-8781093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:309
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):26, 67

               
               
               Conread position:183-663
               
               
               Cow position:chr9:19158195-19157711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:326
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):26, 160

               
               
               Conread position:183-664
               
               
               Cow position:chr9:47043298-47043796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:324
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):26, 238

               
               
               Conread position:183-668
               
               
               Cow position:chr9:1250659-1250159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 224

               
               
               Conread position:183-668
               
               
               Cow position:chr9:17304637-17304136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:328
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):26, 141

               
               
               Conread position:183-668
               
               
               Cow position:chr9:18508485-18507992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 193

               
               
               Conread position:183-668
               
               
               Cow position:chr9:27036240-27036740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:326
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):26, 158

               
               
               Conread position:183-668
               
               
               Cow position:chr9:27783525-27784023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:331
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):26, 158

               
               
               Conread position:183-668
               
               
               Cow position:chr9:28679303-28679795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 225

               
               
               Conread position:183-668
               
               
               Cow position:chr9:31808922-31809417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:329
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):26, 151

               
               
               Conread position:183-668
               
               
               Cow position:chr9:37969871-37969386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:331
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):26, 85

               
               
               Conread position:183-668
               
               
               Cow position:chr9:51180841-51180340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:330
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):26, 109

               
               
               Conread position:183-670
               
               
               Cow position:chr9:20176368-20175871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 85

               
               
               Conread position:184-663
               
               
               Cow position:chr9:42311017-42311525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 216

               
               
               Conread position:184-668
               
               
               Cow position:chr9:1638194-1638654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:336
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):11, 170

               
               
               Conread position:184-670
               
               
               Cow position:chr9:22436306-22436794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:332
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):25, 52

               
               
               Conread position:185-382
               
               
               Cow position:chr9:4666520-4666730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:185-668
               
               
               Cow position:chr9:4717513-4718003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:326
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):47, 10

               
               
               Conread position:185-669
               
               
               Cow position:chr9:44819483-44819969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 145

               
               
               Conread position:187-670
               
               
               Cow position:chr9:35594741-35594250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 208

               
               
               Conread position:188-410
               
               
               Cow position:chr9:17901226-17900994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):44, 20

               
               
               Conread position:188-655
               
               
               Cow position:chr9:26101920-26101443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:332
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):56, 97

               
               
               Conread position:188-668
               
               
               Cow position:chr9:8402707-8403191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:327
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):23, 9

               
               
               Conread position:189-420
               
               
               Cow position:chr9:3936108-3935867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:191-653
               
               
               Cow position:chr9:25188447-25188920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:308
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):44, 320

               
               
               Conread position:191-668
               
               
               Cow position:chr9:129840-129356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 109

               
               
               Conread position:204-363
               
               
               Cow position:chr9:35105446-35105605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):35, 61

               
               
               Conread position:204-414
               
               
               Cow position:chr9:47545573-47545777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):180, 9

               
               
               Conread position:205-403
               
               
               Cow position:chr9:28000885-28001097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):26, 199

               
               
               Conread position:208-411
               
               
               Cow position:chr9:29789313-29789107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:208-668
               
               
               Cow position:chr9:52035210-52035658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:297
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):182, 18

               
               
               Conread position:220-384
               
               
               Cow position:chr9:64026821-64026986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):8, 120

               
               
               Conread position:232-369
               
               
               Cow position:chr9:53528888-53529024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:232-402
               
               
               Cow position:chr9:52292793-52292962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):79, 126

               
               
               Conread position:232-659
               
               
               Cow position:chr9:9313739-9313332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:269
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:236-668
               
               
               Cow position:chr9:1074771-1074335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:295
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):143, 158

               
               
               Conread position:238-664
               
               
               Cow position:chr9:46041840-46041425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:274
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):154, 15

               
               
               Conread position:250-504
               
               
               Cow position:chr9:35315458-35315211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):71, 140

               
               
               Conread position:252-668
               
               
               Cow position:chr9:56303031-56302608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:279
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):138, 201

               
               
               Conread position:254-670
               
               
               Cow position:chr9:59509738-59509329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 163

               
               
               Conread position:260-663
               
               
               Cow position:chr9:32294926-32294525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:256
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):124, 133

               
               
               Conread position:268-668
               
               
               Cow position:chr9:29026486-29026091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:250
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):122, 61

               
               
               Conread position:274-442
               
               
               Cow position:chr9:30190876-30190707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):105, 116

               
               
               Conread position:303-668
               
               
               Cow position:chr9:203822-203454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:233
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):87, 154

               
               
               Conread position:325-670
               
               
               Cow position:chr9:29333075-29333425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):9, 134

               
               
               Conread position:338-668
               
               
               Cow position:chr9:37066362-37066699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):51, 79

               
               
               Conread position:430-670
               
               
               Cow position:chr9:13474196-13473948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):24, 174

               
               
               Conread position:466-668
               
               
               Cow position:chr9:52292997-52293210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:506-668
               
               
               Cow position:chr9:3805309-3805476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr9:6709634-6709793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):71, 54

               
               
               Conread position:508-665
               
               
               Cow position:chr9:16177263-16177425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr9:22440747-22440909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr9:26737597-26737761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-665
               
               
               Cow position:chr9:44384923-44385086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr9:14001731-14001895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-668
               
               
               Cow position:chr9:29626752-29626589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):84, 12

               
               
               Conread position:508-668
               
               
               Cow position:chr9:59537777-59537939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):85, 49

               
               
               Conread position:508-670
               
               
               Cow position:chr9:9562368-9562207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):95, 84

               
               
               Conread position:508-670
               
               
               Cow position:chr9:31090853-31091020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:509-665
               
               
               Cow position:chr9:64013560-64013401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:510-668
               
               
               Cow position:chr9:1994729-1994568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):77, 143

               
               
               Conread position:510-668
               
               
               Cow position:chr9:10938402-10938565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:510-668
               
               
               Cow position:chr9:44204399-44204237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:510-670
               
               
               Cow position:chr9:54681072-54680910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):77, 44

               
               
               Conread position:145-408
               
               
               Cow position:chrX:24195205-24194944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):28, 39

               
               
               Conread position:159-663
               
               
               Cow position:chrX:1053912-1053388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:316
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):7, 39

               
               
               Conread position:160-664
               
               
               Cow position:chrX:27986599-27986087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:335
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):11, 20

               
               
               Conread position:160-665
               
               
               Cow position:chrX:2144200-2144711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:319
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):11, 138

               
               
               Conread position:160-665
               
               
               Cow position:chrX:18220654-18221162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 232

               
               
               Conread position:160-668
               
               
               Cow position:chrX:22617975-22617451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:530
               
               
               Alignm identity:331
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):7, 240

               
               
               Conread position:160-668
               
               
               Cow position:chrX:32065938-32065422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 240

               
               
               Conread position:167-384
               
               
               Cow position:chrX:30138348-30138117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):17, 22

               
               
               Conread position:169-364
               
               
               Cow position:chrX:30061853-30061659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):28, 57

               
               
               Conread position:169-384
               
               
               Cow position:chrX:12667356-12667576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):51, 179

               
               
               Conread position:169-403
               
               
               Cow position:chrX:2534830-2534603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):65, 28

               
               
               Conread position:169-622
               
               
               Cow position:chrX:27495954-27496413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:297
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):57, 86

               
               
               Conread position:169-634
               
               
               Cow position:chrX:27618901-27618423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:321
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):21, 138

               
               
               Conread position:169-646
               
               
               Cow position:chrX:13055059-13055516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:320
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):16, 90

               
               
               Conread position:169-665
               
               
               Cow position:chrX:29935839-29936342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 161

               
               
               Conread position:169-668
               
               
               Cow position:chrX:16361880-16361374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:330
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):46, 253

               
               
               Conread position:170-369
               
               
               Cow position:chrX:7031706-7031911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:170-378
               
               
               Cow position:chrX:37813393-37813604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):50, 88

               
               
               Conread position:170-384
               
               
               Cow position:chrX:2561617-2561399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:170-384
               
               
               Cow position:chrX:2815243-2815023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:170-384
               
               
               Cow position:chrX:2858137-2857917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:170-384
               
               
               Cow position:chrX:3083896-3083678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):50, 113

               
               
               Conread position:170-384
               
               
               Cow position:chrX:16811204-16810987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):17, 13

               
               
               Conread position:170-384
               
               
               Cow position:chrX:37015357-37015576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:170-385
               
               
               Cow position:chrX:28586222-28586442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):17, 9

               
               
               Conread position:170-403
               
               
               Cow position:chrX:321706-321945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):17, 13

               
               
               Conread position:170-403
               
               
               Cow position:chrX:15600388-15600625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:170-403
               
               
               Cow position:chrX:22567013-22566775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):50, 164

               
               
               Conread position:170-403
               
               
               Cow position:chrX:23020540-23020775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):56, 25

               
               
               Conread position:170-405
               
               
               Cow position:chrX:24324324-24324083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:170-411
               
               
               Cow position:chrX:12314522-12314274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):65, 8

               
               
               Conread position:170-414
               
               
               Cow position:chrX:18452222-18452472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:170-414
               
               
               Cow position:chrX:30436085-30436335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:170-431
               
               
               Cow position:chrX:15125985-15125722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):59, 13

               
               
               Conread position:170-434
               
               
               Cow position:chrX:2977851-2977580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:170-506
               
               
               Cow position:chrX:17477181-17476860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):50, 218

               
               
               Conread position:170-583
               
               
               Cow position:chrX:28664637-28665053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:261
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):54, 228

               
               
               Conread position:170-583
               
               
               Cow position:chrX:30201496-30201079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:263
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):50, 229

               
               
               Conread position:170-584
               
               
               Cow position:chrX:13075454-13075044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:255
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):56, 102

               
               
               Conread position:170-584
               
               
               Cow position:chrX:13096017-13095605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):63, 104

               
               
               Conread position:170-607
               
               
               Cow position:chrX:29172519-29172081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:280
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):209, 51

               
               
               Conread position:170-620
               
               
               Cow position:chrX:972009-972477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:306
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):24, 13

               
               
               Conread position:170-630
               
               
               Cow position:chrX:11423112-11423580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:299
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):50, 241

               
               
               Conread position:170-637
               
               
               Cow position:chrX:13447585-13447110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:307
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):50, 249

               
               
               Conread position:170-650
               
               
               Cow position:chrX:37957814-37957326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 249

               
               
               Conread position:170-663
               
               
               Cow position:chrX:15979716-15979208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:330
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):50, 240

               
               
               Conread position:170-663
               
               
               Cow position:chrX:39562712-39562211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 287

               
               
               Conread position:170-665
               
               
               Cow position:chrX:3374668-3374165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 229

               
               
               Conread position:170-665
               
               
               Cow position:chrX:5282539-5282041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:327
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):50, 99

               
               
               Conread position:170-665
               
               
               Cow position:chrX:12653265-12652762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 242

               
               
               Conread position:170-665
               
               
               Cow position:chrX:16684594-16684092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:324
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):50, 17

               
               
               Conread position:170-665
               
               
               Cow position:chrX:18658567-18658064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 221

               
               
               Conread position:170-665
               
               
               Cow position:chrX:20035159-20034658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 177

               
               
               Conread position:170-665
               
               
               Cow position:chrX:20333320-20332816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 249

               
               
               Conread position:170-665
               
               
               Cow position:chrX:23454778-23454275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:326
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):17, 13

               
               
               Conread position:170-665
               
               
               Cow position:chrX:26765958-26765453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:324
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):26, 152

               
               
               Conread position:170-665
               
               
               Cow position:chrX:30012240-30012752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:323
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):50, 321

               
               
               Conread position:170-665
               
               
               Cow position:chrX:35531096-35531599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 241

               
               
               Conread position:170-668
               
               
               Cow position:chrX:673963-673460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 32

               
               
               Conread position:170-668
               
               
               Cow position:chrX:2481389-2480886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:316
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):59, 102

               
               
               Conread position:170-668
               
               
               Cow position:chrX:2577666-2578169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 27

               
               
               Conread position:170-668
               
               
               Cow position:chrX:3419970-3419478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:322
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):45, 217

               
               
               Conread position:170-668
               
               
               Cow position:chrX:5393606-5393100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 241

               
               
               Conread position:170-668
               
               
               Cow position:chrX:7094709-7095215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 314

               
               
               Conread position:170-668
               
               
               Cow position:chrX:11463806-11463300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:321
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):50, 241

               
               
               Conread position:170-668
               
               
               Cow position:chrX:12184184-12184689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:326
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):56, 218

               
               
               Conread position:170-668
               
               
               Cow position:chrX:13411893-13411385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:331
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):62, 170

               
               
               Conread position:170-668
               
               
               Cow position:chrX:14460757-14461252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 13

               
               
               Conread position:170-668
               
               
               Cow position:chrX:14596088-14596591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 240

               
               
               Conread position:170-668
               
               
               Cow position:chrX:16276890-16277395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 249

               
               
               Conread position:170-668
               
               
               Cow position:chrX:17052786-17053298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:331
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):39, 255

               
               
               Conread position:170-668
               
               
               Cow position:chrX:21224716-21225218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:326
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):63, 25

               
               
               Conread position:170-668
               
               
               Cow position:chrX:21341643-21342154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:329
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):50, 311

               
               
               Conread position:170-668
               
               
               Cow position:chrX:21580726-21581233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:330
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):39, 164

               
               
               Conread position:170-668
               
               
               Cow position:chrX:21753192-21752690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:326
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):51, 8

               
               
               Conread position:170-668
               
               
               Cow position:chrX:21830753-21831254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:326
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):17, 13

               
               
               Conread position:170-668
               
               
               Cow position:chrX:24771620-24771113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 17

               
               
               Conread position:170-668
               
               
               Cow position:chrX:26398885-26398379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 288

               
               
               Conread position:170-668
               
               
               Cow position:chrX:27425081-27424575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 241

               
               
               Conread position:170-668
               
               
               Cow position:chrX:28506028-28505522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 229

               
               
               Conread position:170-668
               
               
               Cow position:chrX:28757403-28756891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 241

               
               
               Conread position:170-668
               
               
               Cow position:chrX:30170603-30170111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:322
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):16, 63

               
               
               Conread position:170-668
               
               
               Cow position:chrX:38148835-38149338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:330
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):31, 13

               
               
               Conread position:170-672
               
               
               Cow position:chrX:1548220-1548728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:331
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):17, 13

               
               
               Conread position:171-378
               
               
               Cow position:chrX:12702462-12702248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:171-434
               
               
               Cow position:chrX:28626391-28626135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):188, 22

               
               
               Conread position:171-494
               
               
               Cow position:chrX:29097438-29097763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):58, 150

               
               
               Conread position:171-621
               
               
               Cow position:chrX:30070908-30071363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:295
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):60, 28

               
               
               Conread position:171-664
               
               
               Cow position:chrX:6871834-6871338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 186

               
               
               Conread position:171-668
               
               
               Cow position:chrX:14784230-14783733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 226

               
               
               Conread position:171-668
               
               
               Cow position:chrX:30068607-30068100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:336
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):41, 58

               
               
               Conread position:171-670
               
               
               Cow position:chrX:6281542-6281036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 14

               
               
               Conread position:172-378
               
               
               Cow position:chrX:13396974-13396765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):48, 199

               
               
               Conread position:172-384
               
               
               Cow position:chrX:16780526-16780741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:174-417
               
               
               Cow position:chrX:25613289-25613538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):8, 197

               
               
               Conread position:176-374
               
               
               Cow position:chrX:5651410-5651213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):21, 52

               
               
               Conread position:176-414
               
               
               Cow position:chrX:16700938-16701182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):59, 39

               
               
               Conread position:176-437
               
               
               Cow position:chrX:4330048-4329782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):12, 137

               
               
               Conread position:177-668
               
               
               Cow position:chrX:23278262-23278770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:328
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):32, 166

               
               
               Conread position:178-382
               
               
               Cow position:chrX:504964-504753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):53, 15

               
               
               Conread position:178-657
               
               
               Cow position:chrX:45418999-45418511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:309
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):27, 127

               
               
               Conread position:179-668
               
               
               Cow position:chrX:1942111-1941617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 215

               
               
               Conread position:179-670
               
               
               Cow position:chrX:41887737-41887242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 42

               
               
               Conread position:180-397
               
               
               Cow position:chrX:6249294-6249077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):204, 67

               
               
               Conread position:182-668
               
               
               Cow position:chrX:15623260-15622749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:339
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):27, 283

               
               
               Conread position:183-364
               
               
               Cow position:chrX:15178189-15177994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:183-367
               
               
               Cow position:chrX:3467399-3467205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:183-384
               
               
               Cow position:chrX:37850376-37850591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:183-402
               
               
               Cow position:chrX:32123303-32123536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):32, 134

               
               
               Conread position:183-403
               
               
               Cow position:chrX:20798552-20798783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):52, 166

               
               
               Conread position:183-408
               
               
               Cow position:chrX:32327412-32327647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):32, 140

               
               
               Conread position:183-414
               
               
               Cow position:chrX:27084213-27084463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:183-440
               
               
               Cow position:chrX:4752381-4752109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:183-657
               
               
               Cow position:chrX:12668495-12668011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:315
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):26, 212

               
               
               Conread position:183-663
               
               
               Cow position:chrX:19875756-19876246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 89

               
               
               Conread position:183-665
               
               
               Cow position:chrX:5322482-5321984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:323
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):30, 109

               
               
               Conread position:183-665
               
               
               Cow position:chrX:28867997-28867501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 129

               
               
               Conread position:183-668
               
               
               Cow position:chrX:11148089-11147586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:330
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):26, 283

               
               
               Conread position:183-668
               
               
               Cow position:chrX:18535660-18536147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:327
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):26, 100

               
               
               Conread position:183-668
               
               
               Cow position:chrX:21491409-21491911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:330
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):52, 24

               
               
               Conread position:183-668
               
               
               Cow position:chrX:23389274-23388789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:324
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):29, 80

               
               
               Conread position:183-668
               
               
               Cow position:chrX:27592741-27592242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:330
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):26, 146

               
               
               Conread position:183-668
               
               
               Cow position:chrX:29096081-29095579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 300

               
               
               Conread position:183-668
               
               
               Cow position:chrX:30230855-30230367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:321
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):26, 141

               
               
               Conread position:183-670
               
               
               Cow position:chrX:17666549-17666047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:322
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):23, 125

               
               
               Conread position:184-662
               
               
               Cow position:chrX:21643656-21643172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 98

               
               
               Conread position:185-504
               
               
               Cow position:chrX:41102223-41101903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:237
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):27, 90

               
               
               Conread position:185-657
               
               
               Cow position:chrX:28521356-28520865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:314
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):12, 277

               
               
               Conread position:185-668
               
               
               Cow position:chrX:9093890-9094389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:324
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):27, 144

               
               
               Conread position:185-670
               
               
               Cow position:chrX:16848631-16848145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:327
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):48, 10

               
               
               Conread position:187-506
               
               
               Cow position:chrX:4743782-4743455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:222
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):46, 10

               
               
               Conread position:188-423
               
               
               Cow position:chrX:24134022-24133785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):28, 51

               
               
               Conread position:189-403
               
               
               Cow position:chrX:7753159-7753384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:199-380
               
               
               Cow position:chrX:5367877-5367694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:204-362
               
               
               Cow position:chrX:13081756-13081590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:205-499
               
               
               Cow position:chrX:22127868-22127584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):25, 73

               
               
               Conread position:206-384
               
               
               Cow position:chrX:21590262-21590440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:214-668
               
               
               Cow position:chrX:12344232-12344687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:299
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):171, 23

               
               
               Conread position:228-670
               
               
               Cow position:chrX:13181259-13180799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):283, 19

               
               
               Conread position:231-668
               
               
               Cow position:chrX:31510925-31511365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 42

               
               
               Conread position:231-670
               
               
               Cow position:chrX:10414834-10414392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 94

               
               
               Conread position:232-365
               
               
               Cow position:chrX:3622394-3622527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:232-373
               
               
               Cow position:chrX:10385607-10385748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:232-402
               
               
               Cow position:chrX:35026284-35026451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):154, 100

               
               
               Conread position:232-504
               
               
               Cow position:chrX:24111461-24111204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):17, 41

               
               
               Conread position:232-590
               
               
               Cow position:chrX:12836010-12835666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):277, 154

               
               
               Conread position:232-668
               
               
               Cow position:chrX:29910119-29909679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:293
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):158, 174

               
               
               Conread position:233-436
               
               
               Cow position:chrX:24475894-24475693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):157, 21

               
               
               Conread position:234-656
               
               
               Cow position:chrX:16037132-16036712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:287
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):155, 37

               
               
               Conread position:235-403
               
               
               Cow position:chrX:42477504-42477335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):145, 156

               
               
               Conread position:236-659
               
               
               Cow position:chrX:1784877-1785302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:283
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):150, 65

               
               
               Conread position:238-665
               
               
               Cow position:chrX:5296243-5295809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:287
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):107, 40

               
               
               Conread position:238-665
               
               
               Cow position:chrX:27979504-27979076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:277
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):102, 91

               
               
               Conread position:245-668
               
               
               Cow position:chrX:21791935-21792361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:284
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):149, 208

               
               
               Conread position:279-668
               
               
               Cow position:chrX:10530434-10530044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:262
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):100, 93

               
               
               Conread position:294-668
               
               
               Cow position:chrX:20724336-20724713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:238
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):46, 34

               
               
               Conread position:302-663
               
               
               Cow position:chrX:47395878-47395507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:255
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):27, 66

               
               
               Conread position:312-661
               
               
               Cow position:chrX:13913815-13914159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):148, 38

               
               
               Conread position:315-669
               
               
               Cow position:chrX:3142110-3142458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):75, 90

               
               
               Conread position:433-668
               
               
               Cow position:chrX:15041057-15040803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:506-665
               
               
               Cow position:chrX:27123985-27124148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:506-668
               
               
               Cow position:chrX:18952096-18951930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:508-658
               
               
               Cow position:chrX:24323982-24323828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-665
               
               
               Cow position:chrX:5600927-5600765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-665
               
               
               Cow position:chrX:13930150-13929990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:508-665
               
               
               Cow position:chrX:15177853-15177692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):79, 138

               
               
               Conread position:508-665
               
               
               Cow position:chrX:16810308-16810147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:508-665
               
               
               Cow position:chrX:21507585-21507424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-665
               
               
               Cow position:chrX:21731194-21731037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):88, 26

               
               
               Conread position:508-665
               
               
               Cow position:chrX:30436427-30436588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-665
               
               
               Cow position:chrX:34094251-34094090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-668
               
               
               Cow position:chrX:322048-322209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):84, 12

               
               
               Conread position:508-668
               
               
               Cow position:chrX:3467064-3466900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-668
               
               
               Cow position:chrX:4752030-4751867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):87, 64

               
               
               Conread position:508-668
               
               
               Cow position:chrX:7753482-7753646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-668
               
               
               Cow position:chrX:8589763-8589929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:508-668
               
               
               Cow position:chrX:9126664-9126828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:508-668
               
               
               Cow position:chrX:15262040-15261869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:508-668
               
               
               Cow position:chrX:16780865-16781029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:508-668
               
               
               Cow position:chrX:22566112-22565948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:508-668
               
               
               Cow position:chrX:24445485-24445319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:508-668
               
               
               Cow position:chrX:27316861-27317019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:508-668
               
               
               Cow position:chrX:29098016-29098180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:508-668
               
               
               Cow position:chrX:39696365-39696524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:508-670
               
               
               Cow position:chrX:30834101-30834265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):76, 37

               
               
               Conread position:509-665
               
               
               Cow position:chrX:17476836-17476676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:509-665
               
               
               Cow position:chrX:28586565-28586724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):77, 92

               
               
               Conread position:509-668
               
               
               Cow position:chrX:2561272-2561109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:509-668
               
               
               Cow position:chrX:2814899-2814737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):27, 23

               
               
               Conread position:509-668
               
               
               Cow position:chrX:2857793-2857631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):27, 23

               
               
               Conread position:509-668
               
               
               Cow position:chrX:23020879-23021047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:509-668
               
               
               Cow position:chrX:37813730-37813893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:510-663
               
               
               Cow position:chrX:47384727-47384572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):87, 134

               
               
               Conread position:510-668
               
               
               Cow position:chrX:8481032-8481193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):75, 91

               
               
               Conread position:510-668
               
               
               Cow position:chrX:26432996-26433157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):75, 87

               
               
               Conread position:510-668
               
               
               Cow position:chrX:33536154-33536316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:511-663
               
               
               Cow position:chrX:36838297-36838452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:511-665
               
               
               Cow position:chrX:30182341-30182185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:511-668
               
               
               Cow position:chrX:29852131-29851972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):80, 9

               
               
               Conread position:515-668
               
               
               Cow position:chrX:26529623-26529780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:531-668
               
               
               Cow position:chrX:37850747-37850886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):56, 6

               
               
               Conread position:533-668
               
               
               Cow position:chrX:34007390-34007529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):76, 0
Conread position:	152-668
Cow position:	chr10:41878415-41878938 (view UCSC Genome Browser custom track)
Alignm length:	530
Alignm identity:	342
Alignm E-value:	0
Alignm gaps (pig, cow):	19, 8
Conread position:	160-364
Cow position:	chr10:47908432-47908644 (view UCSC Genome Browser custom track)
Alignm length:	213
Alignm identity:	154
Alignm E-value:	1e-30
Alignm gaps (pig, cow):	11, 0
Conread position:	160-668
Cow position:	chr10:1378994-1379511 (view UCSC Genome Browser custom track)
Alignm length:	526
Alignm identity:	346
Alignm E-value:	0
Alignm gaps (pig, cow):	7, 24
Conread position:	169-380
Cow position:	chr10:19706131-19705902 (view UCSC Genome Browser custom track)
Alignm length:	230
Alignm identity:	159
Alignm E-value:	4e-21
Alignm gaps (pig, cow):	9, 0
Conread position:	169-402
Cow position:	chr10:39444780-39444532 (view UCSC Genome Browser custom track)
Alignm length:	251
Alignm identity:	177
Alignm E-value:	7e-26
Alignm gaps (pig, cow):	43, 24
Conread position:	169-668
Cow position:	chr10:57988486-57987996 (view UCSC Genome Browser custom track)
Alignm length:	512
Alignm identity:	338
Alignm E-value:	9.99967e-42
Alignm gaps (pig, cow):	60, 14
Conread position:	169-670
Cow position:	chr10:21079114-21079638 (view UCSC Genome Browser custom track)
Alignm length:	538
Alignm identity:	378
Alignm E-value:	0
Alignm gaps (pig, cow):	16, 197
Conread position:	170-367
Cow position:	chr10:39181305-39181507 (view UCSC Genome Browser custom track)
Alignm length:	203
Alignm identity:	139
Alignm E-value:	2e-22
Alignm gaps (pig, cow):	51, 0
Conread position:	170-384
Cow position:	chr10:44708102-44707888 (view UCSC Genome Browser custom track)
Alignm length:	222
Alignm identity:	154
Alignm E-value:	5e-22
Alignm gaps (pig, cow):	26, 17
Conread position:	170-403
Cow position:	chr10:57555826-57555587 (view UCSC Genome Browser custom track)
Alignm length:	241
Alignm identity:	167
Alignm E-value:	3e-28
Alignm gaps (pig, cow):	50, 229
Conread position:	170-414
Cow position:	chr10:62407268-62407023 (view UCSC Genome Browser custom track)
Alignm length:	249
Alignm identity:	164
Alignm E-value:	5e-22
Alignm gaps (pig, cow):	15, 71
Conread position:	170-509
Cow position:	chr10:10583631-10583972 (view UCSC Genome Browser custom track)
Alignm length:	348
Alignm identity:	225
Alignm E-value:	3e-27
Alignm gaps (pig, cow):	17, 13
Conread position:	170-587
Cow position:	chr10:14805355-14805773 (view UCSC Genome Browser custom track)
Alignm length:	425
Alignm identity:	269
Alignm E-value:	5e-33
Alignm gaps (pig, cow):	50, 229
Conread position:	170-634
Cow position:	chr10:19494780-19494305 (view UCSC Genome Browser custom track)
Alignm length:	482
Alignm identity:	307
Alignm E-value:	7e-36
Alignm gaps (pig, cow):	50, 288
Conread position:	170-661
Cow position:	chr10:30683983-30683483 (view UCSC Genome Browser custom track)
Alignm length:	506
Alignm identity:	322
Alignm E-value:	4.00001e-41
Alignm gaps (pig, cow):	17, 153
Conread position:	170-665
Cow position:	chr10:10172244-10172753 (view UCSC Genome Browser custom track)
Alignm length:	513
Alignm identity:	324
Alignm E-value:	4.00001e-40
Alignm gaps (pig, cow):	62, 241
Conread position:	170-668
Cow position:	chr10:7896973-7896466 (view UCSC Genome Browser custom track)
Alignm length:	511
Alignm identity:	327
Alignm E-value:	0
Alignm gaps (pig, cow):	17, 324
Conread position:	171-668
Cow position:	chr10:29845144-29844647 (view UCSC Genome Browser custom track)
Alignm length:	504
Alignm identity:	322
Alignm E-value:	0
Alignm gaps (pig, cow):	55, 14
Conread position:	172-414
Cow position:	chr10:32317284-32317531 (view UCSC Genome Browser custom track)
Alignm length:	251
Alignm identity:	168
Alignm E-value:	5e-23
Alignm gaps (pig, cow):	56, 6
Conread position:	172-665
Cow position:	chr10:33870796-33871298 (view UCSC Genome Browser custom track)
Alignm length:	507
Alignm identity:	327
Alignm E-value:	0
Alignm gaps (pig, cow):	48, 381