Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10213D08.5.5 |
| Conread position: | 14-175 |
| Cow position: | chr1:1632673-1632513 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 136 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 387-610 |
| Cow position: | chr1:72557463-72557685 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 1-367 |
| Cow position: | chr10:49445096-49444733 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 0 |
| Conread position: | 395-609 |
| Cow position: | chr10:49444678-49444467 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 405-608 |
| Cow position: | chr10:7907395-7907597 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 189-334 |
| Cow position: | chr11:9281037-9281177 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 52, 71 |
| Conread position: | 486-610 |
| Cow position: | chr11:45512614-45512493 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 433-610 |
| Cow position: | chr12:23120166-23119990 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 1-84 |
| Cow position: | chr13:52828406-52828489 (view UCSC Genome Browser custom track) |
| Alignm length: | 84 |
| Alignm identity: | 78 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 185-290 |
| Cow position: | chr13:56327702-56327597 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 87 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 407-549 |
| Cow position: | chr14:18407869-18407730 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 491-609 |
| Cow position: | chr14:33423540-33423422 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 368-544 |
| Cow position: | chr16:1219430-1219252 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 8, 27 |
| Conread position: | 436-602 |
| Cow position: | chr16:13213254-13213419 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 162 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 441-610 |
| Cow position: | chr16:43679702-43679868 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 185-609 |
| Cow position: | chr17:22514981-22514550 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 220 |
| Conread position: | 196-278 |
| Cow position: | chr17:25553113-25553031 (view UCSC Genome Browser custom track) |
| Alignm length: | 83 |
| Alignm identity: | 76 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 398-610 |
| Cow position: | chr17:25552972-25552760 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 56 |
| Conread position: | 512-609 |
| Cow position: | chr17:37359555-37359652 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 86 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 395-593 |
| Cow position: | chr18:48769911-48769719 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 508-588 |
| Cow position: | chr19:30461874-30461954 (view UCSC Genome Browser custom track) |
| Alignm length: | 81 |
| Alignm identity: | 73 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 606-708 |
| Cow position: | chr19:40401940-40401838 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 91 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 708-802 |
| Cow position: | chr19:40400903-40400809 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 87 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 847-988 |
| Cow position: | chr19:40400506-40400365 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 135 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 986-1645 |
| Cow position: | chr19:40400293-40399632 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 588 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 251, 218 |
| Conread position: | 424-590 |
| Cow position: | chr2:78378009-78377843 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 140 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 6, 31 |
| Conread position: | 429-610 |
| Cow position: | chr2:50181428-50181248 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 210-334 |
| Cow position: | chr21:40856765-40856888 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 305-534 |
| Cow position: | chr21:2937313-2937095 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 391-610 |
| Cow position: | chr21:23613313-23613095 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 63 |
| Conread position: | 445-609 |
| Cow position: | chr22:40607211-40607044 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 145 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 48, 9 |
| Conread position: | 468-610 |
| Cow position: | chr26:8700646-8700512 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 57, 36 |
| Conread position: | 368-544 |
| Cow position: | chr27:17570923-17570745 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 8, 27 |
| Conread position: | 372-610 |
| Cow position: | chr27:631531-631296 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 437-610 |
| Cow position: | chr27:29012195-29012367 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 154 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 1-366 |
| Cow position: | chr29:5118951-5118583 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 344 |
| Conread position: | 350-608 |
| Cow position: | chr29:18407534-18407789 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 19 |
| Conread position: | 418-567 |
| Cow position: | chr29:5118581-5118433 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 462-609 |
| Cow position: | chr3:70317073-70317220 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 381-615 |
| Cow position: | chr5:55181319-55181098 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 391-545 |
| Cow position: | chr7:53366409-53366260 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 477-610 |
| Cow position: | chr7:39556564-39556430 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 1-287 |
| Cow position: | chr8:15408250-15407964 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-153 |
| Cow position: | chr9:24611402-24611252 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 483-610 |
| Cow position: | chr9:39578809-39578936 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 522-610 |
| Cow position: | chr9:56195104-56195016 (view UCSC Genome Browser custom track) |
| Alignm length: | 89 |
| Alignm identity: | 82 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 532-610 |
| Cow position: | chr9:38620681-38620759 (view UCSC Genome Browser custom track) |
| Alignm length: | 79 |
| Alignm identity: | 76 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 490-610 |
| Cow position: | chrX:28763322-28763204 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 94 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 530-610 |
| Cow position: | chrX:20814256-20814176 (view UCSC Genome Browser custom track) |
| Alignm length: | 81 |
| Alignm identity: | 74 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |